[17] | 1 | #include <sys/types.h> |
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| 2 | #include <dirent.h> |
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| 3 | #include <errno.h> |
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| 4 | #include <string.h> |
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| 5 | #include <stdlib.h> |
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| 6 | #include <vector> |
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| 7 | #include <string> |
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| 8 | #include <iostream> |
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| 9 | #include <fstream> |
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| 10 | |
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| 11 | #include <mpi.h> |
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| 12 | |
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| 13 | using namespace std; |
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| 14 | |
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| 15 | /* |
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[22] | 16 | * These two variables sets the command to launch in each sub-directory |
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| 17 | * and the arguments required. The name of the root directory of the |
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| 18 | * datasets is given as an argument when starting the MPIlauncher. const |
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| 19 | * string |
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| 20 | * commandToLaunch("$HOME/SOURCES/MES-PROJETS/MPILAUNCHER/appli.exe"); |
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| 21 | * const string("-l -info"); |
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| 22 | */ |
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[17] | 23 | |
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| 24 | /* |
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[22] | 25 | * getListOfDir(string rep, vector<string> &files) |
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| 26 | * |
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| 27 | * Gets the list of tjhe subdirectories in the directory rep and returns |
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| 28 | * them in a vector array of strings. Directories ";" and ".." are removed |
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| 29 | * from the vector array. |
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| 30 | */ |
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| 31 | int getListOfDir(string rep, vector < string > &files) { |
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| 32 | DIR *dir; |
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| 33 | struct dirent *ent; |
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| 34 | int count; |
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[17] | 35 | |
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[22] | 36 | count = 0; |
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| 37 | dir = opendir(rep.c_str()); |
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| 38 | if (dir != NULL) { |
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| 39 | /* |
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| 40 | * search for the files within directory |
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| 41 | */ |
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| 42 | while ((ent = readdir(dir)) != NULL) |
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| 43 | if (ent->d_type == DT_DIR) { |
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| 44 | if (strcmp(ent->d_name, ".") * |
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| 45 | strcmp(ent->d_name, "..")) { |
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| 46 | count++; |
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| 47 | files.push_back(string(ent->d_name)); |
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| 48 | } |
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| 49 | } |
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| 50 | closedir(dir); |
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| 51 | } |
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| 52 | else { |
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| 53 | cerr << "Directory " << rep.c_str() << " not found" << endl; |
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| 54 | } |
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[17] | 55 | return count; |
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[22] | 56 | } |
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[17] | 57 | |
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[22] | 58 | /* |
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| 59 | * getListOfCommand(string rep, vector<string> &files) Gets the list of |
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| 60 | * commands in the ascii file fich. One command per line (no wrap) in this |
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| 61 | * first version. |
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| 62 | */ |
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| 63 | int getListOfCommand(const string & fich, vector < string > &commands) { |
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| 64 | int count; |
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| 65 | string line; |
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[17] | 66 | |
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[22] | 67 | count = 0; |
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| 68 | commands.clear(); |
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[17] | 69 | |
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[22] | 70 | std::ifstream infile(fich.c_str(), std::ios_base::in); |
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| 71 | while (getline(infile, line, '\n')) { |
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| 72 | // remove all trailing blanks |
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| 73 | while (line.size() > 0 && isspace(line[line.size() - 1])) |
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| 74 | line.erase(line.size() - 1); |
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[17] | 75 | |
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[22] | 76 | // no empty line |
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| 77 | if (line.size() > 0) { |
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| 78 | commands.push_back(line); |
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| 79 | count++; |
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| 80 | } |
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| 81 | } |
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| 82 | return count; |
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| 83 | } |
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| 84 | |
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[17] | 85 | /* |
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[22] | 86 | * Main program |
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| 87 | */ |
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| 88 | int main(int argc, char **argv) { |
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| 89 | vector < string > files = vector < string > (); |
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[25] | 90 | string rep; // root folder where to find subfolders |
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[22] | 91 | int rank, size, nbdir, stride; |
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| 92 | int nbcmd; |
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| 93 | /* |
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| 94 | * These two variables sets the command to launch in each |
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| 95 | * sub-directory and the arguments required. The name of the root |
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| 96 | * directory of the datasets is given as an argument when starting the |
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| 97 | * MPIlauncher. |
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| 98 | */ |
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| 99 | string commandToLaunch; |
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| 100 | string arguments; |
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| 101 | string commandfile; |
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[17] | 102 | |
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[22] | 103 | string finalCommand; // command to execute |
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[17] | 104 | |
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[25] | 105 | MPI_Init(&argc, &argv); // starts MPI |
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| 106 | MPI_Comm_rank(MPI_COMM_WORLD, &rank); // get current process id |
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| 107 | MPI_Comm_size(MPI_COMM_WORLD, &size); // get number of processes |
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[17] | 108 | |
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[22] | 109 | if (argc < 3) { |
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| 110 | cout << "USAGE:" << endl; |
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| 111 | cout << argv[0] << " root_directory command [arguments]" << |
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| 112 | endl; |
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| 113 | cout << argv[0] << " -f command_file" << endl; |
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| 114 | } |
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| 115 | else { |
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| 116 | if (strcmp(argv[1], "-f") == 0) { |
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| 117 | /* |
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| 118 | * processing a command file now. |
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| 119 | */ |
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| 120 | commandfile = argv[2]; |
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| 121 | nbcmd = getListOfCommand(commandfile, files); |
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| 122 | int reste; |
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| 123 | stride = nbcmd / size; |
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| 124 | for (unsigned int i = 0; i < stride; i++) { |
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| 125 | cerr << "Process " << rank << " execute " << |
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| 126 | files[stride * rank + i] << endl; |
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| 127 | system(files[stride * rank + i].c_str()); |
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| 128 | } |
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| 129 | // remaining command lines |
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| 130 | reste = nbcmd - stride * size; |
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| 131 | if (rank > 0 && rank <= reste) { |
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| 132 | cerr << "Process " << rank << " execute " << |
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| 133 | files[nbcmd - rank] << endl; |
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| 134 | system(files[nbcmd - rank].c_str()); |
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| 135 | } |
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| 136 | } |
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| 137 | else { |
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| 138 | /* |
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| 139 | * processing a list of dir now |
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| 140 | */ |
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| 141 | rep = string(argv[1]); |
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| 142 | commandToLaunch = string(argv[2]); |
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| 143 | for (int i = 3; i < argc; i++) |
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| 144 | (arguments += argv[i]) += " "; |
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[17] | 145 | |
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[22] | 146 | nbdir = getListOfDir(rep, files); |
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| 147 | |
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| 148 | // Number of dir should divide by number of cpus |
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| 149 | if (nbdir % size != 0) { |
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| 150 | if (rank == 0) |
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| 151 | cerr << nbdir << |
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| 152 | " dataset(s) to process cannot fit on " |
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| 153 | << size << " processes" << endl << |
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| 154 | "FAILED" << endl; |
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| 155 | } |
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| 156 | else { |
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| 157 | // execute the command |
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| 158 | stride = nbdir / size; |
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| 159 | for (unsigned int i = 0; i < stride; i++) { |
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| 160 | string finalCommand("cd "); |
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| 161 | finalCommand += rep; |
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| 162 | finalCommand += "/"; |
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| 163 | finalCommand += |
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| 164 | files[stride * rank + i]; |
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| 165 | finalCommand += ";"; |
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| 166 | finalCommand += commandToLaunch; |
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| 167 | finalCommand += " "; |
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| 168 | finalCommand += arguments; |
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| 169 | // cout<<"On "<<rank<<" execute "<<finalCommand<<endl; |
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| 170 | system(finalCommand.c_str()); |
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| 171 | } |
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| 172 | } |
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| 173 | } |
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[17] | 174 | } |
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[22] | 175 | MPI_Finalize(); |
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[17] | 176 | |
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[22] | 177 | return 0; |
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| 178 | } |
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| 179 | |
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| 180 | /* |
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| 181 | * documentation POD format |
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| 182 | * |
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| 183 | * =head1 NAME |
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| 184 | * |
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| 185 | * mpilauncher - parallel execute lot of small job via mpi |
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| 186 | * |
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| 187 | * =head1 SYNOPSIS |
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| 188 | * |
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[24] | 189 | * mpilauncher root_folder command [args] |
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| 190 | * mpilauncher -f command_file |
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[22] | 191 | * |
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[26] | 192 | * =head1 DESCRIPTION |
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| 193 | * |
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| 194 | * C<mpilauncher> need to be executed inside an MPI environment (mpirun), |
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| 195 | * typically a cluster... Job number is divide by the number of core and |
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| 196 | * is launch on each core via the C<system> command one after other. |
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| 197 | * |
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| 198 | * There is two case: jobs are list and define in a file (option -f) or |
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| 199 | * one command is launch inside a lot of folder. In this case, you need |
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| 200 | * to give the root folder in which who have all your subfolder... |
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| 201 | * |
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| 202 | * |
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| 203 | * =head1 SEE ALSO |
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| 204 | * |
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| 205 | * oar-dispatch, oar-parexec |
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| 206 | * |
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| 207 | * |
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| 208 | * =head1 AUTHORS |
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| 209 | * |
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| 210 | * Written by Patrick Begou - Gabriel Moreau, Grenoble - France |
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| 211 | * |
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| 212 | * |
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| 213 | * =head1 LICENSE AND COPYRIGHT |
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| 214 | * |
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| 215 | * GPL version 2 or later |
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| 216 | * |
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| 217 | * Copyright (C) 2011 Patrick Begou. |
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| 218 | * |
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[22] | 219 | * =cut |
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| 220 | * |
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| 221 | */ |
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