[150] | 1 | #!/usr/bin/env perl |
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| 2 | # |
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[188] | 3 | # 2018/01/17 Gabriel Moreau <Gabriel.Moreau(A)univ-grenoble-alpes.fr> |
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[155] | 4 | # |
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[179] | 5 | # apt-get install yamllint libyaml-syck-perl libtemplate-perl libarchive-zip-perl |
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[150] | 6 | |
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| 7 | use strict; |
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| 8 | use warnings; |
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| 9 | |
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| 10 | use File::Copy qw{copy}; |
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| 11 | use YAML::Syck; |
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| 12 | use Getopt::Long(); |
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| 13 | use Cwd(); |
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[154] | 14 | use Template; |
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[188] | 15 | use Archive::Zip qw( :ERROR_CODES :CONSTANTS ); |
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[150] | 16 | |
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[154] | 17 | |
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[150] | 18 | my ($verbose); |
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| 19 | Getopt::Long::GetOptions( |
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| 20 | 'verbose' => \$verbose, |
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| 21 | ); |
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| 22 | |
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| 23 | |
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| 24 | my %CMD_DB = ( |
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| 25 | 'help' => \&cmd_help, |
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| 26 | 'version' => \&cmd_version, |
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| 27 | 'check' => \&cmd_check, |
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| 28 | 'make-link' => \&cmd_make_link, |
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[192] | 29 | 'remove-link' => \&cmd_remove_link |
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[178] | 30 | 'make-zip' => \&cmd_make_zip, |
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[153] | 31 | 'make-author' => \&cmd_make_author, |
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| 32 | 'make-licence' => \&cmd_make_licence, |
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[158] | 33 | 'make-copyright' => \&cmd_make_copyright, |
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[161] | 34 | 'list-licence' => \&cmd_list_licence, |
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[150] | 35 | ); |
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| 36 | |
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| 37 | ################################################################ |
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| 38 | # main program |
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| 39 | ################################################################ |
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| 40 | |
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| 41 | my $cmd = shift @ARGV || 'help'; |
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| 42 | if (defined $CMD_DB{$cmd}) { |
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| 43 | $CMD_DB{$cmd}->(@ARGV); |
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| 44 | } |
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| 45 | else { |
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| 46 | print {*STDERR} "project-meta: command $cmd not found\n\n"; |
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| 47 | $CMD_DB{'help'}->(); |
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| 48 | exit 1; |
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| 49 | } |
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| 50 | |
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| 51 | exit; |
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| 52 | |
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| 53 | ################################################################ |
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| 54 | # subroutine |
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| 55 | ################################################################ |
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| 56 | |
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[188] | 57 | sub print_ok { |
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| 58 | my ($key, $test) = @_; |
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| 59 | |
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| 60 | printf "%-35s : %s\n", $key, $test ? 'yes' : 'no'; |
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| 61 | } |
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| 62 | |
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[150] | 63 | ################################################################ |
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[188] | 64 | |
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| 65 | sub addfolder2list { |
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| 66 | my ($folderdb, $folder) = @_; |
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| 67 | |
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| 68 | $folder =~ s{/[^/]+$}{}; |
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| 69 | |
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| 70 | return if $folder !~ m{/}; |
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| 71 | |
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| 72 | $folderdb->{$folder}++; |
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| 73 | return addfolder2list($folderdb, $folder); |
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| 74 | } |
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| 75 | |
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| 76 | ################################################################ |
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[150] | 77 | # command |
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| 78 | ################################################################ |
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| 79 | |
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| 80 | sub cmd_help { |
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[164] | 81 | print <<'END'; |
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| 82 | project-meta - opendata project metafile manager |
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[150] | 83 | |
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[177] | 84 | project-meta help |
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| 85 | project-meta version |
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[168] | 86 | project-meta check |
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[164] | 87 | project-meta make-link |
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[192] | 88 | project-meta remove-link |
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[186] | 89 | project-meta make-zip |
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[164] | 90 | project-meta make-author |
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| 91 | project-meta make-licence |
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| 92 | project-meta make-copyright |
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| 93 | project-meta make-licence |
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| 94 | project-meta list-licence |
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[150] | 95 | END |
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| 96 | } |
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| 97 | |
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| 98 | ################################################################ |
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| 99 | |
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| 100 | sub cmd_version { |
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[177] | 101 | print "0.0.2\n"; |
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[150] | 102 | } |
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| 103 | |
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| 104 | ################################################################ |
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| 105 | |
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| 106 | sub cmd_check { |
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| 107 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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| 108 | |
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| 109 | my $acronym = $meta->{'project'}{'acronym'}; |
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[154] | 110 | my $current_dir = Cwd::getcwd(); |
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[150] | 111 | my $dap_folder = $meta->{'public-dap'}{'dap-folder'}; |
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| 112 | |
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[192] | 113 | print_ok 'project/acronym', $acronym =~ m{\d\d\w[\w\d_/]+}; |
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[150] | 114 | print_ok 'public-dap/dap-folder', $dap_folder ne '' and $dap_folder =~ m{^/}; |
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| 115 | print_ok 'dap-folder not match current_dir', $dap_folder !~ m{$current_dir}; |
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| 116 | |
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| 117 | #print YAML::Syck::Dump($meta); |
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| 118 | } |
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| 119 | |
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| 120 | ################################################################ |
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| 121 | |
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| 122 | sub cmd_make_link { |
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| 123 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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[154] | 124 | my $current_dir = Cwd::getcwd(); |
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[175] | 125 | my $acronym = $meta->{'project'}{'acronym'}; |
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| 126 | my $dap_folder = $meta->{'public-dap'}{'dap-folder'}; |
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| 127 | my $data_set = $meta->{'public-dap'}{'data-set'}; |
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[150] | 128 | |
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[175] | 129 | push @{$data_set}, 'AUTHORS.txt', 'COPYRIGHT.txt', 'LICENCE.txt'; |
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[174] | 130 | { |
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| 131 | # Remove doublon |
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| 132 | my %seen = (); |
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[175] | 133 | @{$data_set} = grep { ! $seen{$_}++ } @{$data_set}; |
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[174] | 134 | } |
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| 135 | |
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[150] | 136 | # Create a list of the folder |
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| 137 | my %folders; |
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[175] | 138 | for my $dataset (@{$data_set}) { |
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[150] | 139 | addfolder2list(\%folders, $dataset); |
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| 140 | } |
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| 141 | |
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[191] | 142 | print "chmod o+rX,o-w '$current_dir'\n"; |
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| 143 | print "mkdir -p '$dap_folder/$acronym'\n" if not -d "$dap_folder/$acronym"; |
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[150] | 144 | for my $folder (sort keys %folders) { |
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[191] | 145 | print "chmod o+rX,o-w '$current_dir/$folder'\n"; |
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| 146 | print "mkdir -p '$dap_folder/$acronym/$folder'\n" if -d "$current_dir/$folder"; |
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[150] | 147 | } |
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| 148 | |
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[175] | 149 | for my $dataset (@{$data_set}) { |
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[169] | 150 | if ($dataset =~ m{/}) { |
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| 151 | # Folder case |
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| 152 | my $folder = $dataset =~ s{/[^/]+$}{}r; |
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[191] | 153 | print "ln --symbolic --target-directory '$dap_folder/$acronym/$folder/' '$current_dir/$dataset'\n"; |
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[169] | 154 | } |
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| 155 | else { |
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| 156 | # File case |
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[191] | 157 | print "ln --symbolic --target-directory '$dap_folder/$acronym/' '$current_dir/$dataset'\n"; |
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[169] | 158 | } |
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[150] | 159 | |
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[171] | 160 | } |
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[191] | 161 | print "chmod -R o+rX,o-w '$dap_folder/$acronym/'\n"; |
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[150] | 162 | } |
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| 163 | |
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| 164 | ################################################################ |
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| 165 | |
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[192] | 166 | sub cmd_remove_link { |
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| 167 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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| 168 | my $current_dir = Cwd::getcwd(); |
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| 169 | my $acronym = $meta->{'project'}{'acronym'}; |
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| 170 | my $dap_folder = $meta->{'public-dap'}{'dap-folder'}; |
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| 171 | |
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| 172 | die "Error: DAP folder match current folder" if $dap_folder =~ m{$current_dir} or $current_dir =~ m{$dap_folder}; |
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| 173 | |
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| 174 | print "find '$dap_folder/$acronym/' -type l -o -type d\n"; |
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| 175 | print "find '$dap_folder/$acronym/' -type l -o -type d -delete\n"; |
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| 176 | } |
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| 177 | |
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| 178 | ################################################################ |
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| 179 | |
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[178] | 180 | sub cmd_make_zip { |
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| 181 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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| 182 | my $current_dir = Cwd::getcwd(); |
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| 183 | my $data_set = $meta->{'public-dap'}{'data-set'}; |
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| 184 | my $acronym = $meta->{'project'}{'acronym'}; |
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| 185 | |
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| 186 | push @{$data_set}, 'AUTHORS.txt', 'COPYRIGHT.txt', 'LICENCE.txt'; |
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| 187 | { |
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| 188 | # Remove doublon |
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| 189 | my %seen = (); |
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| 190 | @{$data_set} = grep { ! $seen{$_}++ } @{$data_set}; |
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| 191 | } |
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| 192 | |
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| 193 | # Create a Zip file |
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| 194 | my $zip = Archive::Zip->new(); |
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| 195 | |
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| 196 | for my $dataset (@{$data_set}) { |
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| 197 | if (-d $dataset) { |
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| 198 | # Folder case |
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[182] | 199 | $zip->addTree($dataset, "$acronym/$dataset"); |
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[178] | 200 | } |
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| 201 | elsif (-f $dataset) { |
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| 202 | # File case |
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[183] | 203 | $zip->addFile($dataset, "$acronym/$dataset"); |
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[178] | 204 | } |
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| 205 | else { |
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[179] | 206 | # Strange case |
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[178] | 207 | print "Error: entry $dataset doesn't exists\n"; |
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| 208 | } |
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| 209 | } |
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| 210 | |
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[181] | 211 | my ($sec, $min, $hour, $mday, $mon, $year, $wday, $yday, $isdst) = localtime time; |
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[180] | 212 | $year += 1900; |
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| 213 | $mon++; |
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| 214 | my $date = sprintf '%04i%02i%02i-%02i%02i', $year, $mon, $mday, $hour, $min; |
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| 215 | |
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[178] | 216 | # Save the Zip file |
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[180] | 217 | unless ($zip->writeToFileNamed("$current_dir/$acronym--$date.zip") == AZ_OK) { |
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[178] | 218 | die 'Error: zip write error'; |
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| 219 | } |
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| 220 | } |
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| 221 | |
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| 222 | ################################################################ |
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| 223 | |
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[150] | 224 | sub cmd_make_author { |
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| 225 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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[154] | 226 | |
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| 227 | my $current_dir = Cwd::getcwd(); |
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[155] | 228 | |
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[154] | 229 | my $acronym = $meta->{'project'}{'acronym'}; |
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| 230 | my $authors_list = $meta->{'project'}{'authors'}; |
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[155] | 231 | |
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| 232 | if (-f "$current_dir/AUTHORS.txt") { |
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[156] | 233 | # Test for manual or automatically generated file |
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| 234 | # Automatically generated file by project-meta |
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| 235 | my $automatic; |
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[157] | 236 | open my $fh, '<', "$current_dir/AUTHORS.txt" or die $!; |
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| 237 | for my $line (<$fh>) { |
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[156] | 238 | $line =~ m/Automatically generated .* project-meta/i and $automatic++; |
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| 239 | } |
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| 240 | close $fh; |
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| 241 | |
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| 242 | if (not $automatic) { |
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| 243 | print "Warning: AUTHORS.txt already exists\n"; |
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| 244 | return; |
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| 245 | } |
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| 246 | |
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| 247 | print "Warning: update AUTHORS.txt\n"; |
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[155] | 248 | } |
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| 249 | |
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[154] | 250 | my $tt = Template->new(INCLUDE_PATH => '/usr/share/project-meta/template.d'); |
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| 251 | my $msg_format = ''; |
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| 252 | $tt->process('AUTHORS.tt', |
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| 253 | { |
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| 254 | acronym => $acronym, |
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| 255 | authorlist => $authors_list, |
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| 256 | }, \$msg_format) || die $tt->error; |
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| 257 | |
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[155] | 258 | open my $fh, '>', "$current_dir/AUTHORS.txt" or die $!; |
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| 259 | print $fh "$msg_format\n\n"; |
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| 260 | close $fh; |
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[150] | 261 | } |
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| 262 | |
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| 263 | ################################################################ |
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| 264 | |
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| 265 | sub cmd_make_licence { |
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| 266 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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| 267 | |
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| 268 | my $current_dir = Cwd::getcwd(); |
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| 269 | |
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| 270 | if (-f "$current_dir/LICENCE.txt") { |
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| 271 | print "Warning: LICENCE.txt already exists\n"; |
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| 272 | return; |
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| 273 | } |
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| 274 | |
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| 275 | my $licence = $meta->{'public-dap'}{'data-licence'}; |
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| 276 | |
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| 277 | if (not -f "/usr/share/project-meta/licence.d/$licence.txt") { |
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| 278 | print "Error: licence $licence doesn't exists in project-meta database\n"; |
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| 279 | exit 1; |
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| 280 | } |
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| 281 | |
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| 282 | copy("/usr/share/project-meta/licence.d/$licence.txt", "$current_dir/LICENCE.txt") |
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| 283 | or die "Error: licence copy failed - $!"; |
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[154] | 284 | |
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| 285 | print "Info: LICENCE.txt file create\n"; |
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[150] | 286 | return; |
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| 287 | } |
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| 288 | |
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| 289 | ################################################################ |
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[158] | 290 | |
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| 291 | sub cmd_make_copyright { |
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| 292 | my $meta = YAML::Syck::LoadFile("PROJECT-META.yml"); |
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| 293 | |
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| 294 | my $current_dir = Cwd::getcwd(); |
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| 295 | |
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| 296 | if (-f "$current_dir/COPYRIGHT.txt") { |
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| 297 | # Test for manual or automatically generated file |
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| 298 | # Automatically generated file by project-meta |
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| 299 | my $automatic; |
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| 300 | open my $fh, '<', "$current_dir/COPYRIGHT.txt" or die $!; |
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| 301 | for my $line (<$fh>) { |
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| 302 | $line =~ m/Automatically generated .* project-meta/i and $automatic++; |
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| 303 | } |
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| 304 | close $fh; |
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| 305 | |
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| 306 | if (not $automatic) { |
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| 307 | print "Warning: COPYRIGHT.txt already exists\n"; |
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| 308 | return; |
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| 309 | } |
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| 310 | |
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| 311 | print "Warning: update COPYRIGHT.txt\n"; |
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| 312 | } |
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[171] | 313 | |
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[176] | 314 | my $tt = Template->new( |
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| 315 | INCLUDE_PATH => '/usr/share/project-meta/template.d', |
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| 316 | POST_CHOMP => 1, # Remove space and carriage return after %] |
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| 317 | ); |
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[158] | 318 | my $msg_format = ''; |
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| 319 | $tt->process('COPYRIGHT.tt', |
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| 320 | { |
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| 321 | title => $meta->{'project'}{'title'}, |
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| 322 | acronym => $meta->{'project'}{'acronym'}, |
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| 323 | authorlist => $meta->{'project'}{'authors'}, |
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| 324 | description => $meta->{'project'}{'short-description'}, |
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| 325 | licence => $meta->{'public-dap'}{'data-licence'}, |
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| 326 | doi => $meta->{'publication'}{'doi'}, |
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| 327 | }, \$msg_format) || die $tt->error; |
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| 328 | |
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| 329 | open my $fh, '>', "$current_dir/COPYRIGHT.txt" or die $!; |
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| 330 | print $fh "$msg_format\n\n"; |
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| 331 | close $fh; |
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| 332 | } |
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| 333 | |
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| 334 | ################################################################ |
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[161] | 335 | |
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| 336 | sub cmd_list_licence { |
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| 337 | opendir my $dh, '/usr/share/project-meta/licence.d/' or die $!; |
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| 338 | for my $licence (readdir $dh) { |
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[163] | 339 | # Keep only file |
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| 340 | next if not -f "/usr/share/project-meta/licence.d/$licence"; |
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[162] | 341 | |
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| 342 | # Keep only .txt file |
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| 343 | next if not $licence =~ m/\.txt$/; |
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| 344 | |
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[163] | 345 | $licence =~ s/\.txt$//; |
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[161] | 346 | print "$licence\n"; |
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| 347 | } |
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| 348 | closedir $dh; |
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| 349 | } |
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[164] | 350 | |
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| 351 | ################################################################ |
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| 352 | # documentation |
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| 353 | ################################################################ |
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| 354 | |
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| 355 | __END__ |
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| 356 | |
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| 357 | =head1 NAME |
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| 358 | |
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| 359 | project-meta - opendata project metafile manager |
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| 360 | |
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| 361 | |
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| 362 | =head1 USAGE |
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| 363 | |
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[177] | 364 | project-meta help |
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| 365 | project-meta version |
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[168] | 366 | project-meta check |
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[164] | 367 | project-meta make-link |
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[192] | 368 | project-meta remove-link |
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[186] | 369 | project-meta make-zip |
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[164] | 370 | project-meta make-author |
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| 371 | project-meta make-licence |
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| 372 | project-meta make-copyright |
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| 373 | project-meta make-licence |
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| 374 | project-meta list-licence |
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| 375 | |
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| 376 | =head1 DESCRIPTION |
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| 377 | |
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[188] | 378 | Project-Meta is a small tool to maintain a set of open data files. |
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| 379 | In order to help you in this task, C<project-meta> command has a set of action |
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| 380 | to generated and maintain many files in your dataset. |
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[166] | 381 | |
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[186] | 382 | Everything is declare in the metafile F<PROJECT-META.yml>. |
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| 383 | This YAML file must exist in your root projet folder. |
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[188] | 384 | See L</METAFILE SPECIFICATION>. |
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[186] | 385 | |
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[164] | 386 | =head1 COMMANDS |
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| 387 | |
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| 388 | Some command are defined in the source code but are not documented here. |
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| 389 | Theses could be not well defined, not finished, not well tested... |
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| 390 | You can read the source code and use them at your own risk |
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[188] | 391 | (like for all the Project-Meta code). |
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[164] | 392 | |
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[168] | 393 | =head2 check |
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| 394 | |
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| 395 | project-meta check |
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| 396 | |
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| 397 | Check your F<PROJECT-META.yml> has the good key. |
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| 398 | If your metafile is not a valid YAML file, |
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| 399 | you can use C<yamllint> command to check just it's format. |
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| 400 | |
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[189] | 401 | =head2 make-link |
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| 402 | |
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| 403 | project-meta make-link |
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| 404 | |
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| 405 | Create UNIX soft links on the OpeNDAP folder to the real data. |
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| 406 | Files F<AUTHORS.txt>, F<LICENCE.txt> and F<COPYRIGHT.txt> are mandatory but could be generated (see below). |
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| 407 | The main keys use in the F<PROJECT-META.yml> are: |
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| 408 | |
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| 409 | =over |
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| 410 | |
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[190] | 411 | =item * C<project/acronym>: the project short acronym, add to the OpeNDAP root folder |
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| 412 | |
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| 413 | =item * C<public-dap/dap-folder>: the OpeNDAP root folder |
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| 414 | |
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[189] | 415 | =item * C<public-dap/data-set>: a list of files or folder to push |
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| 416 | |
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| 417 | =back |
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| 418 | |
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[192] | 419 | Because this command could be dangerous, it does nothing! |
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| 420 | It print on terminal shell command to be done. |
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| 421 | You have to verify ouput before eval it. |
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| 422 | |
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| 423 | project-meta make-link |
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| 424 | project-meta make-link | bash |
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| 425 | |
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| 426 | =head2 remove-link |
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| 427 | |
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| 428 | project-meta remove-link |
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| 429 | |
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| 430 | Remove link in OpeNDAP folder for that projet. |
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| 431 | Because command C<rm> is always dangerous, |
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| 432 | we use here the command C<find> limited to folder and link. |
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| 433 | |
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| 434 | Please verify the returned values before excuted it with the C<-delete> option. |
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| 435 | |
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[190] | 436 | =head2 make-zip |
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| 437 | |
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| 438 | project-meta make-zip |
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| 439 | |
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| 440 | Create a ZIP archive with the open data set. |
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| 441 | Files F<AUTHORS.txt>, F<LICENCE.txt> and F<COPYRIGHT.txt> are mandatory but could be generated (see below). |
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| 442 | The main keys use in the F<PROJECT-META.yml> are: |
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| 443 | |
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| 444 | =over |
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| 445 | |
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| 446 | =item * C<project/acronym>: the project short acronym, use as root folder |
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| 447 | |
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| 448 | =item * C<public-dap/data-set>: a list of files or folder to push |
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| 449 | |
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| 450 | =back |
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| 451 | |
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[164] | 452 | =head2 make-licence |
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| 453 | |
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| 454 | project-meta make-licence |
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| 455 | |
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[189] | 456 | Copy the licence file from the project-meta licence database at the current folder |
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| 457 | with the file name: F<LICENCE.txt>. |
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[164] | 458 | |
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[189] | 459 | The licence is defined in the F<PROJECT-META.yml> specification under the key C<public-dap/data-licence>. |
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[188] | 460 | The list of possible licence is given with the command L</list-licence>. |
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[164] | 461 | |
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| 462 | =head2 list-licence |
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| 463 | |
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| 464 | project-meta list-licence |
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| 465 | |
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| 466 | Give the list of all the open data licence supported by the project-meta licence database. |
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[167] | 467 | At this time the possible licence are: |
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[164] | 468 | |
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[167] | 469 | license-ouverte-v2.0 |
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| 470 | open-database-license-v1.0 |
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| 471 | |
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[186] | 472 | Note that these licences are dedicated to open data. |
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| 473 | Please do not use open licence that have been written for code or documentation for data. |
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[167] | 474 | |
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[186] | 475 | |
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[167] | 476 | =head1 METAFILE SPECIFICATION |
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| 477 | |
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| 478 | Each project must have an open data metafile which describe the project : C<PROJECT-META.yml>. |
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| 479 | The file is in YAML format because this is a human readable style of text file. |
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| 480 | |
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| 481 | You can find in the project-meta software a C<PROJECT-META.sample.yml> example. |
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| 482 | This one is actually the master reference specification! |
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| 483 | |
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| 484 | |
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[188] | 485 | =head1 KNOWN BUGS |
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[171] | 486 | |
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[188] | 487 | - not really check keys and tags before doing action! |
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[171] | 488 | |
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[168] | 489 | =head1 SEE ALSO |
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| 490 | |
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| 491 | yamllint |
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| 492 | |
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| 493 | |
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[164] | 494 | =head1 AUTHOR |
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| 495 | |
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[168] | 496 | Written by Gabriel Moreau, LEGI UMR5519, CNRS, Grenoble - France |
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[164] | 497 | |
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| 498 | =head1 SPECIAL THANKS |
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| 499 | |
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| 500 | The list of people below did not directly contribute to project-meta's source code |
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| 501 | but provided me with some data, returned bugs |
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[189] | 502 | or helped me in another task like having new ideas, specifications... |
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[164] | 503 | Maybe I forgot your contribution in recent years, |
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| 504 | please forgive me in advance and send me an e-mail to correct this. |
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| 505 | |
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[168] | 506 | Joel Sommeria, Julien Chauchat, Cyrille Bonamy, Antoine Mathieu. |
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[164] | 507 | |
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| 508 | |
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| 509 | =head1 LICENSE AND COPYRIGHT |
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| 510 | |
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| 511 | Licence GNU GPL version 2 or later and Perl equivalent |
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| 512 | |
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[165] | 513 | Copyright (C) 2017-2018 Gabriel Moreau <Gabriel.Moreau(A)univ-grenoble-alpes.fr>. |
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