| 1 | -------------------------------------------------- |
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| 2 | Steps for installing uvmat: |
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| 3 | -------------------------------------------------- |
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| 4 | - Install Matlab, release R 13 or more recent. |
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| 5 | - Download the package appropriate to your system from http://coriolis.legi.grenoble-inp.fr/spip.php?article4, |
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| 6 | or use the SVN server, see below. |
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| 7 | - unzip the package to a convenient location. Path name must not contain blanks. |
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| 8 | - Add this folder /uvmat to your matlab paths (option 'add folder without sub-folders'). Use the Matlab function addpath or the menu bar. |
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| 9 | -For reading compressed avi movies, a codec must be available on your computer. |
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| 10 | -uvmat uses the toolbox xmltree. In case of problem for reading xml files (problem with xml_findstr.mexglx) type the command >> mex -O xml_findstr.c or reload the package xmltree from the web. |
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| 11 | |
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| 12 | -------------------------------------------------- |
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| 13 | Updating uvmat with the SVN server(to fill): |
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| 14 | -------------------------------------------------- |
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| 15 | |
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| 16 | -------------------------------------------------- |
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| 17 | civx software for PIV (local version): |
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| 18 | -------------------------------------------------- |
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| 19 | - Install uvmat as above, civ should be ready to run. |
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| 20 | - Binary files are provides with the package in the subdirectory /bin. They depend on the operating system, unlike the Matlab functions. |
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| 21 | - There are 4 separate binaries: |
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| 22 | civ1.exe: simple correlation imaging velocimetry |
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| 23 | civ2.exe: hierarchical algorithm for correlation imaging velocimetry |
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| 24 | fix_flag.exe: program for removing false vectors (only needed for batch option) |
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| 25 | patch.exe: program for thin shell spline interpolation |
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| 26 | - These binaries can be put at a different location, then the corresponding path must be defined in the file PARAM.xml. |
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| 27 | |
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| 28 | -------------------------------------------------- |
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| 29 | civx software for PIV:case of Mac OS |
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| 30 | -------------------------------------------------- |
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| 31 | libpng s'installe sans problème apparemment (voir sur site), pas plus de probleme que sous linux |
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| 32 | Pour netcdf, il faut installer macports : |
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| 33 | http://www.macports.org/ |
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| 34 | Puis dans le dossier /opt/local/bin |
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| 35 | sudo ./port install netcdf +g95 |
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| 36 | A ce niveau la les executables civ, patch etc .. fonctionnent dans un terminal mais pas encore |
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| 37 | dans le shell de matlab (il manque une bibliothèque). |
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| 38 | dans le dossier |
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| 39 | /opt/local/lib/ |
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| 40 | cp libnetcdf.4.dylib /Applications/MATLAB_R2009b.app/bin/maci64/MATLAB.app/Content/MacOS/ |
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| 41 | ou l'on remplacera allégrement le chemin suivant la version de Matlab concernée. |
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| 42 | |
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| 43 | -------------------------------------------------- |
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| 44 | Netcdf library needed for old versions of Matlab (if the builtin function netcdf.create does not exist): |
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| 45 | -------------------------------------------------- |
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| 46 | - Install the (free) toolbox for reading and writing netcf files for the velocity fields: download from http://sourceforge.net/projects/mexcdf/. You must download both mexnc and netcdf_toolbox packages and |
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| 47 | copy them under the folder 'toolbox' in your Matlab directory. |
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| 48 | - download netcdf.dll (also provided in this directory, but you may already have in bin/win32 in your Matlab directory) |
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| 49 | (http://www.unidata.ucar.edu/software/netcdf/docs/netcdf-install/Getting-Prebuilt-DLL.html#Getting-Prebuilt-DLL) |
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| 50 | - To check whether this installation is successful, type 'ncbrowser' on the Matlab prompt: |
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| 51 | you should get a browser allowing to scan netcdf files. |
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| 52 | |
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| 53 | -------------------------------------------------- |
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| 54 | xml schemas |
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| 55 | ------------------------------------------------- |
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| 56 | - Copy the schemas at a convenient location |
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| 57 | - Document the path under the key <SchemaPath in the file 'PARAM.xml' or 'PARAM.xml' |
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| 58 | |
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| 59 | -------------------------------------------------- |
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| 60 | Note for Linux_x86_64 systems |
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| 61 | -------------------------------------------------- |
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| 62 | - copy the file libfftw3.so.3 in the CIVX directory (ex : ~/CIVX/bin) |
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| 63 | - add this entry to the .bashrc file in your home directory |
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| 64 | |
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| 65 | export LD_LIBRARY_PATH=./CIVX/bin:$LD_LIBRARY_PATH |
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| 66 | |
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| 67 | where "./CIVX/bin" should start from the directory you start matlab |
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| 68 | (ex: if you start matlab from your home "user@host~$ matlab -desktop &" |
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| 69 | and your CIVX/bin is located in ~/CIVX/bin) |
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| 70 | |
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| 71 | -------------------------------------------------- |
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| 72 | Note for compiling the civx software on Linux system: |
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| 73 | ------------------------------------------------- |
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| 74 | The binaries are compiled with Intel Fortran v7 and gcc3.3; the following libraries need to be present on your sstem : |
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| 75 | libpng: http://www.libpng.org/pub/png |
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| 76 | intel fortran libraries, please download it here : http://www.civproject.org/files/civx/libIntel.tgz |
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| 77 | extract them, and add the folder to you /etc/ld.so.conf file. |
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