[1068] | 1 | |
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| 2 | %'browse_data': function for scanning directories in a campaign |
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[569] | 3 | %------------------------------------------------------------------------ |
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| 4 | % function varargout = series(varargin) |
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| 5 | % associated with the GUI browse_data.fig |
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| 6 | |
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[809] | 7 | %======================================================================= |
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[1061] | 8 | % Copyright 2008-2019, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France |
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[809] | 9 | % http://www.legi.grenoble-inp.fr |
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| 10 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
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| 11 | % |
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[569] | 12 | % This file is part of the toolbox UVMAT. |
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[809] | 13 | % |
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[569] | 14 | % UVMAT is free software; you can redistribute it and/or modify |
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[809] | 15 | % it under the terms of the GNU General Public License as published |
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| 16 | % by the Free Software Foundation; either version 2 of the license, |
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| 17 | % or (at your option) any later version. |
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| 18 | % |
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[569] | 19 | % UVMAT is distributed in the hope that it will be useful, |
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| 20 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 21 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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[809] | 22 | % GNU General Public License (see LICENSE.txt) for more details. |
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| 23 | %======================================================================= |
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[569] | 24 | |
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| 25 | function varargout = browse_data(varargin) |
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| 26 | |
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[1068] | 27 | % Last Modified by GUIDE v2.5 08-Jul-2019 23:32:39 |
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[569] | 28 | |
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| 29 | % Begin initialization code - DO NOT EDIT |
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| 30 | gui_Singleton = 1; |
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| 31 | gui_State = struct('gui_Name', mfilename, ... |
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[1068] | 32 | 'gui_Singleton', gui_Singleton, ... |
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| 33 | 'gui_OpeningFcn', @browse_data_OpeningFcn, ... |
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| 34 | 'gui_OutputFcn', @browse_data_OutputFcn, ... |
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| 35 | 'gui_LayoutFcn', [] , ... |
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| 36 | 'gui_Callback', []); |
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| 37 | if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback','once')) |
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[569] | 38 | gui_State.gui_Callback = str2func(varargin{1}); |
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| 39 | end |
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| 40 | |
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| 41 | if nargout |
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| 42 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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| 43 | else |
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| 44 | gui_mainfcn(gui_State, varargin{:}); |
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| 45 | end |
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| 46 | % End initialization code - DO NOT EDIT |
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| 47 | |
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| 48 | %------------------------------------------------------------------------ |
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| 49 | % --- Executes just before browse_data is made visible. |
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[1059] | 50 | function browse_data_OpeningFcn(hObject, eventdata, handles, InputDir,EnableMirror,MultiDevices) |
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[569] | 51 | %------------------------------------------------------------------------ |
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[581] | 52 | |
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| 53 | %% Choose default command line output for browse_data |
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[1059] | 54 | handles.output =hObject;% 'Cancel'; |
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[569] | 55 | |
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[581] | 56 | %% Update handles structure |
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[569] | 57 | guidata(hObject, handles); |
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[581] | 58 | set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) |
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[1059] | 59 | set(hObject,'DeleteFcn',{@closefcn})% |
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[569] | 60 | |
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[581] | 61 | %% Determine the position of the dialog - centered on the screen |
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[569] | 62 | FigPos=get(0,'DefaultFigurePosition'); |
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| 63 | OldUnits = get(hObject, 'Units'); |
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| 64 | set(hObject, 'Units', 'pixels'); |
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| 65 | OldPos = get(hObject,'Position'); |
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| 66 | FigWidth = OldPos(3); |
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| 67 | FigHeight = OldPos(4); |
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| 68 | ScreenUnits=get(0,'Units'); |
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| 69 | set(0,'Units','pixels'); |
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| 70 | ScreenSize=get(0,'ScreenSize'); |
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| 71 | set(0,'Units',ScreenUnits); |
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| 72 | FigPos(1)=1/2*(ScreenSize(3)-FigWidth); |
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| 73 | FigPos(2)=2/3*(ScreenSize(4)-FigHeight); |
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| 74 | FigPos(3:4)=[FigWidth FigHeight]; |
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| 75 | set(hObject, 'Position', FigPos); |
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| 76 | set(hObject, 'Units', OldUnits); |
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[1068] | 77 | % if exist('MultiDevices','var') && strcmp(MultiDevices,'on') |
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| 78 | % set(handles.DataSeries,'Max',2) |
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| 79 | % else |
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| 80 | % set(handles.DataSeries,'Max',1) |
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| 81 | % end |
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[837] | 82 | if exist('EnableMirror','var') && strcmp(EnableMirror,'on') |
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| 83 | set(handles.CreateMirror,'Visible','on') |
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| 84 | set(handles.mirror_txt,'Visible','on') |
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| 85 | else |
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| 86 | set(handles.CreateMirror,'Visible','off') |
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| 87 | set(handles.mirror_txt,'Visible','off') |
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| 88 | end |
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[856] | 89 | |
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| 90 | %% initialize the GUI |
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[1059] | 91 | if isempty(regexp(InputDir,'^http:'))&& ~(exist('InputDir','var') && ischar(InputDir) && exist(InputDir,'dir')) |
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| 92 | InputDir=pwd;% current dir is the starting data series by default |
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[856] | 93 | end |
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[1068] | 94 | |
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[1059] | 95 | [ExpWithPath,DataSeries]=fileparts(InputDir); |
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[1068] | 96 | [Experiment,Device,Ext]=fileparts(ExpWithPath); |
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| 97 | Device=[Device Ext]; |
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| 98 | [SourceDir,Experiment,Ext]=fileparts(Experiment); |
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| 99 | Experiment=[Experiment Ext]; |
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| 100 | % [tild,CampaignName]=fileparts(Campaign); |
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| 101 | % RootXml=fullfile(Campaign,[CampaignName '.xml']); |
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[856] | 102 | s=[]; |
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[1068] | 103 | % if exist(RootXml,'file') |
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| 104 | % [s,Heading]=xml2struct(RootXml);%read the xml file |
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| 105 | % if isfield(s,'SourceDir') |
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| 106 | % set(handles.SourceDir,'String',s.SourceDir);%display the source dir if a mirror has been opened |
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| 107 | % set(handles.MirrorDir,'Visible','on');% mirror dir display |
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| 108 | % set(handles.MirrorDir,'String',Campaign);%display the opened mirror dir |
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| 109 | % set(handles.CreateMirror,'String','update_mirror') |
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| 110 | % end |
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| 111 | % end |
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[856] | 112 | if isempty(s) %a source dir has been opened |
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[1068] | 113 | set(handles.SourceDir,'String',SourceDir); |
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[856] | 114 | set(handles.MirrorDir,'Visible','off');% no mirror dir display |
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| 115 | set(handles.CreateMirror,'String','create_mirror') |
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| 116 | end |
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[1068] | 117 | set(handles.DataSeries,'String',{['+/' DataSeries]}); |
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| 118 | set(handles.ListDevices,'String',{['+/' Device]}); |
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| 119 | errormsg=scan_campaign(handles,SourceDir,['+/' Experiment]); |
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[856] | 120 | if ~isempty(errormsg) |
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| 121 | msgbox_uvmat('ERROR',errormsg) |
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| 122 | return |
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| 123 | end |
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[569] | 124 | |
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[856] | 125 | set(hObject,'Visible','on') |
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[1068] | 126 | drawnow |
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| 127 | |
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[569] | 128 | %------------------------------------------------------------------------ |
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| 129 | % --- Outputs from this function are returned to the command line. |
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| 130 | function varargout = browse_data_OutputFcn(hObject, eventdata, handles) |
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| 131 | %------------------------------------------------------------------------ |
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| 132 | % Get default command line output from handles structure |
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| 133 | varargout{1} = handles.output; |
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[1059] | 134 | %%%%%%%%%%%%%%%%%%delete(handles.browse_data) |
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[569] | 135 | |
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| 136 | %------------------------------------------------------------------------ |
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| 137 | % --- Executes on button press in CreateMirror. |
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| 138 | function CreateMirror_Callback(hObject, eventdata, handles) |
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| 139 | %------------------------------------------------------------------------ |
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[733] | 140 | set(handles.SourceDir,'BackgroundColor',[1 1 0])% indicate action of button by yellow color |
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| 141 | drawnow |
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[571] | 142 | SourceDir=get(handles.SourceDir,'String'); |
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| 143 | [SourcePath,ProjectName]=fileparts(SourceDir); |
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| 144 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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[1068] | 145 | MirrorDir=get(handles.MirrorDir,'String');% name of the mirror folder |
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[733] | 146 | else% create the mirror folder if it does not exist |
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[1068] | 147 | MirrorRoot=uigetfile_uvmat('select the folder which must contain the mirror directory:',SourcePath,'uigetdir'); |
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| 148 | if isempty(MirrorRoot) |
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| 149 | return |
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| 150 | elseif strcmp(MirrorRoot,SourcePath) |
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| 151 | msgbox_uvmat('ERROR','The mirror folder must be different from the source') |
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| 152 | return |
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| 153 | else |
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| 154 | MirrorDir=fullfile(MirrorRoot,ProjectName); |
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[569] | 155 | end |
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[1068] | 156 | if exist(MirrorDir,'dir') |
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| 157 | msgbox_uvmat('ERROR',['The folder ' MirrorDir ' chosen as new mirror campaign already exists']) |
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| 158 | return |
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| 159 | else |
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| 160 | [s,errormsg]=mkdir(MirrorDir)% create the mirror dir |
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| 161 | if s~=1 |
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| 162 | msgbox_uvmat('ERROR',['error in creating ' MirrorDir ': ' errormsg]) |
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| 163 | return |
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| 164 | end |
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| 165 | end |
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| 166 | MirrorDoc.SourceDir=SourceDir; |
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| 167 | t=struct2xml(MirrorDoc); |
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| 168 | set(t,1,'name','DataTree'); |
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| 169 | save(t,fullfile(MirrorDir,[ProjectName '.xml']))% create an xml file in the mirror folder to indicate its source folder |
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| 170 | set(handles.MirrorDir,'String',MirrorDir) |
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| 171 | set(handles.MirrorDir,'Visible','on') |
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| 172 | set(handles.CreateMirror,'String','update_mirror') |
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| 173 | end |
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[569] | 174 | ExpName={''}; |
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[733] | 175 | |
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| 176 | %% update the mirror from the source dir |
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[569] | 177 | if exist(SourceDir,'dir') |
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[1068] | 178 | hdir=dir(SourceDir); %list files and dirs |
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| 179 | idir=0; |
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| 180 | for ilist=1:length(hdir) |
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| 181 | if hdir(ilist).isdir% scan all subfolders |
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| 182 | dirname=hdir(ilist).name;% |
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| 183 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')%skip subfolder beginning by '0' |
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| 184 | idir=idir+1; |
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| 185 | mirror=fullfile(MirrorDir,hdir(ilist).name);% corresponding name in the mirror |
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| 186 | if ~exist(mirror,'dir') |
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| 187 | mkdir(mirror)% create the mirror folder if it does not exist |
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| 188 | end |
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| 189 | ExpName{idir}=['+/' hdir(ilist).name];% insert '+/' in the list to show that it is a folder |
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| 190 | end |
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| 191 | % look for the list of 'devices' |
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[569] | 192 | else |
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[1068] | 193 | %warning for isolated files |
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[569] | 194 | end |
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[1068] | 195 | end |
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| 196 | set(handles.ListExperiments,'String',[{'*'};ExpName']) |
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| 197 | set(handles.ListExperiments,'Value',1) |
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| 198 | update_experiments(handles,[{'*'};ExpName'],SourceDir,MirrorDir) |
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| 199 | % ListExperiments_Callback(hObject, eventdata, handles) % list the content of the experiment |
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| 200 | else |
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| 201 | msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) |
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| 202 | end |
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[569] | 203 | set(handles.SourceDir,'BackgroundColor',[1 1 1]) |
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| 204 | |
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| 205 | %------------------------------------------------------------------------ |
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[856] | 206 | % List the experiments in a campaign, filling the menu ListExperiments |
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[569] | 207 | %------------------------------------------------------------------------ |
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[1068] | 208 | function errormsg=scan_campaign(handles,SourceDir,Experiment) |
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[856] | 209 | %------------------------------------------------------------------------ |
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[733] | 210 | errormsg=''; |
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[1068] | 211 | if ~isempty(regexp(SourceDir,'^http'))|| exist(SourceDir,'dir') |
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| 212 | ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case |
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[733] | 213 | if numel(ListStruct)>1000% A campaign folder must contain maily a list of 'experiment' sub-folders |
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[1068] | 214 | errormsg=[SourceDir ' contains too many items (>1000) to be a Project folder']; |
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[733] | 215 | return |
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| 216 | end |
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[1068] | 217 | [ListFiles,index]=list_dir_1(SourceDir,Experiment); |
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[1059] | 218 | set(handles.ListExperiments,'String',ListFiles) |
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| 219 | set(handles.ListExperiments,'Value',index)% initialise the menu selection with the folder defined by the input |
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[570] | 220 | ListExperiments_Callback([],[], handles) |
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[569] | 221 | else |
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[570] | 222 | msgbox_uvmat('ERROR',['The input ' Campaign ' is not a directory']) |
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[569] | 223 | end |
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| 224 | |
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| 225 | %------------------------------------------------------------------------ |
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| 226 | % --- Executes on selection change in ListExperiments. |
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[651] | 227 | %------------------------------------------------------------------------ |
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[1068] | 228 | function ListExperiments_Callback(hObject, eventdata, handles) |
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[651] | 229 | |
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[571] | 230 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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[1068] | 231 | SourceDir=get(handles.MirrorDir,'String'); |
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[741] | 232 | else |
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[1068] | 233 | SourceDir=get(handles.SourceDir,'String'); |
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[571] | 234 | end |
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[569] | 235 | ListExperiments=get(handles.ListExperiments,'String'); |
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| 236 | list_val=get(handles.ListExperiments,'Value'); |
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[1068] | 237 | ListExperiments=ListExperiments(list_val);%choose the selected experiments |
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| 238 | ListDevices=get(handles.ListDevices,'String');% list of devices |
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| 239 | list_val=get(handles.ListDevices,'Value');% currently selected devices |
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| 240 | Device=''; |
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| 241 | if numel(ListDevices)>=list_val |
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| 242 | Device=ListDevices(list_val);%choose selected devices |
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| 243 | end |
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| 244 | [ListFiles,indices]=list_dir_2(SourceDir,ListExperiments,Device); |
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| 245 | set(handles.ListDevices,'String',ListFiles) |
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| 246 | set(handles.ListDevices,'Value',indices)% initialise the menu selection with the folder defined by the input |
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| 247 | ListDevices_Callback([],[], handles) |
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[571] | 248 | |
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[733] | 249 | %------------------------------------------------------------------------ |
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[1068] | 250 | % --- Executes on selection change in ListExperiments. |
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| 251 | %------------------------------------------------------------------------ |
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| 252 | function ListDevices_Callback(hObject, eventdata, handles) |
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| 253 | |
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| 254 | ListDevices=get(handles.ListDevices,'String');% list of devices |
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| 255 | list_val=get(handles.ListDevices,'Value');% currently selected devices |
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| 256 | ListDevices=ListDevices(list_val);%choose selected devices |
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| 257 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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| 258 | SourceDir=get(handles.MirrorDir,'String'); |
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| 259 | else |
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| 260 | SourceDir=get(handles.SourceDir,'String'); |
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| 261 | end |
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| 262 | ListExperiments=get(handles.ListExperiments,'String'); |
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| 263 | list_val=get(handles.ListExperiments,'Value'); |
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| 264 | ListExperiments=ListExperiments(list_val);%choose the selected experiments |
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| 265 | |
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| 266 | DataSeries=get(handles.DataSeries,'String'); |
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| 267 | list_val=get(handles.DataSeries,'Value'); |
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| 268 | if numel(DataSeries)>=list_val |
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| 269 | DataSeries=DataSeries(list_val); |
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| 270 | else |
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| 271 | DataSeries=[]; |
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| 272 | end |
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| 273 | [ListFiles,indices]=list_dir_3(SourceDir,ListExperiments,ListDevices,DataSeries); |
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| 274 | set(handles.DataSeries,'String',ListFiles) |
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| 275 | set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input |
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| 276 | |
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| 277 | %------------------------------------------------------------------------ |
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[733] | 278 | % --- List the DataSeries when a set of experiments is selected |
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| 279 | %------------------------------------------------------------------------ |
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[1068] | 280 | % function list_dataseries(handles,ListExperiments,MirrorPath) |
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| 281 | % |
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| 282 | % DataSeries={}; |
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| 283 | % for iexp=1:numel(ListExperiments) |
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| 284 | % if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory |
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| 285 | % ListExperiments{iexp}(1)=[];%remove the first char '+' used to mark folders |
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| 286 | % ListStruct=dir(fullfile(MirrorPath,ListExperiments{iexp})); %list files and dir in the source experiment directory |
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| 287 | % ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray |
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| 288 | % ListFiles=ListCells(1,:);%list of dir and file names |
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| 289 | % cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
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| 290 | % cell_remove_tild=regexp(ListFiles,'~$');% detect tild the end of file nqme (do not list) |
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| 291 | % check_keep=cellfun('isempty', cell_remove) & cellfun('isempty', cell_remove_tild); |
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| 292 | % check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
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| 293 | % for ilist=1:numel(ListFiles) |
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| 294 | % if check_keep(ilist)% loop on eligible DataSeries folders |
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| 295 | % mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist});%source folder |
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| 296 | % if ~exist(mirror,'file') && ~exist(mirror,'dir')% if the name is a broken link |
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| 297 | % delete(mirror)% delete broken link |
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| 298 | % else %update the list of dataSeries |
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| 299 | % [tild,msg]=fileattrib(mirror); |
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| 300 | % if check_dir(ilist) |
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| 301 | % ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list |
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| 302 | % end |
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| 303 | % if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries |
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| 304 | % DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list |
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| 305 | % end |
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| 306 | % end |
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| 307 | % end |
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| 308 | % end |
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| 309 | % end |
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| 310 | % end |
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| 311 | % if get(handles.CheckDevices,'Value') |
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| 312 | % set(handles.ListDevices,'Value',1) |
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| 313 | % set(handles.ListDevices,'String',sort(DataSeries)) |
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| 314 | % CheckDevices_Callback([],[], handles) |
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| 315 | % else |
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| 316 | % set(handles.DataSeries,'Value',1) |
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| 317 | % set(handles.DataSeries,'String',sort(DataSeries)) |
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| 318 | % end |
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[571] | 319 | |
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[1068] | 320 | %------------------------------------------------------------------------ |
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| 321 | % Provide a list to display |
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| 322 | %------------------------------------------------------------------------ |
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| 323 | function [ListFiles,indices]=list_dir_1(SourceDir,ListSub) |
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| 324 | |
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| 325 | ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case |
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| 326 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
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| 327 | ListFiles=ListCells(1,:); |
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| 328 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
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| 329 | ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display |
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| 330 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
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| 331 | check_keep=cellfun('isempty', cell_remove); |
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| 332 | ListFiles=sort((ListFiles(check_keep))'); |
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| 333 | |
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| 334 | if ischar(ListSub) |
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| 335 | indices=find(strcmp(ListSub,ListFiles)); |
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| 336 | else |
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| 337 | indices=[]; |
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| 338 | for ilist=1:numel(ListSub) |
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| 339 | index=find(strcmp(ListSub{ilist},ListFiles)); |
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| 340 | indices=[indices index]; |
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| 341 | end |
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| 342 | end |
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| 343 | if isempty(indices), indices=1; end |
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| 344 | |
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| 345 | %------------------------------------------------------------------------ |
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| 346 | % Provide a list to display |
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| 347 | %------------------------------------------------------------------------ |
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| 348 | function [ListFilesTot,indices]=list_dir_2(SourceDir,ListDir,ListSub) |
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| 349 | ListFilesTot={}; |
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| 350 | for ilist=1:numel(ListDir) |
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| 351 | if ~isempty(regexp(ListDir{ilist},'^\+/')) |
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| 352 | ListDir{ilist}=regexprep(ListDir{ilist},'^\+/',''); |
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| 353 | ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist})); %list files and dirs, extende to OpenDAP case |
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| 354 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
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| 355 | ListFiles=ListCells(1,:); |
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| 356 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
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| 357 | ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display |
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| 358 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
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| 359 | check_keep=cellfun('isempty', cell_remove); |
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| 360 | ListFilesTot=[ListFilesTot;(ListFiles(check_keep))']; |
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| 361 | end |
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| 362 | end |
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| 363 | ListFilesTot=unique(ListFilesTot); |
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| 364 | if ischar(ListSub) |
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| 365 | indices=find(strcmp(ListSub,ListFilesTot)); |
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| 366 | else |
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| 367 | indices=[]; |
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| 368 | for ilist=1:numel(ListSub) |
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| 369 | index=find(strcmp(ListSub{ilist},ListFilesTot)); |
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| 370 | indices=[indices index]; |
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| 371 | end |
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| 372 | end |
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| 373 | if isempty(indices), indices=1; end |
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| 374 | |
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| 375 | |
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| 376 | %------------------------------------------------------------------------ |
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| 377 | % Provide a list to display |
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| 378 | %------------------------------------------------------------------------ |
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| 379 | function [ListFilesTot,indices]=list_dir_3(SourceDir,ListDir,ListSub,ListSubSub) |
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| 380 | ListFilesTot={}; |
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| 381 | for ilist=1:numel(ListDir) |
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| 382 | if ~isempty(regexp(ListDir{ilist},'^\+/')) |
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| 383 | ListDir{ilist}=regexprep(ListDir{ilist},'^\+/',''); |
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| 384 | for isub=1:numel(ListSub) |
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| 385 | if ~isempty(regexp(ListSub{isub},'^\+/')) |
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| 386 | ListSub{isub}=regexprep(ListSub{isub},'^\+/',''); |
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| 387 | ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist},ListSub{isub})); %list files and dirs, extende to OpenDAP case |
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| 388 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
---|
| 389 | ListFiles=ListCells(1,:); |
---|
| 390 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
---|
| 391 | ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display |
---|
| 392 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
---|
| 393 | check_keep=cellfun('isempty', cell_remove); |
---|
| 394 | ListFilesTot=[ListFilesTot;(ListFiles(check_keep))']; |
---|
[733] | 395 | end |
---|
| 396 | end |
---|
| 397 | end |
---|
| 398 | end |
---|
[1068] | 399 | ListFilesTot=unique(ListFilesTot); |
---|
| 400 | if ischar(ListSubSub) |
---|
| 401 | indices=find(strcmp(ListSubSub,ListFilesTot)); |
---|
[1064] | 402 | else |
---|
[1068] | 403 | indices=[]; |
---|
| 404 | for ilist=1:numel(ListSubSub) |
---|
| 405 | index=find(strcmp(ListSubSub{ilist},ListFilesTot)); |
---|
| 406 | indices=[indices index]; |
---|
| 407 | end |
---|
[1064] | 408 | end |
---|
[1068] | 409 | if isempty(indices), indices=1; end |
---|
[733] | 410 | |
---|
[1068] | 411 | |
---|
[571] | 412 | %------------------------------------------------------------------------ |
---|
[733] | 413 | % --- Executes when the mirror is created or updated |
---|
[651] | 414 | %------------------------------------------------------------------------ |
---|
[1068] | 415 | function update_experiments(handles,ListExperiments,CampaignPath,MirrorPath) |
---|
[651] | 416 | |
---|
[1063] | 417 | DataSeries={}; |
---|
[569] | 418 | for iexp=1:numel(ListExperiments) |
---|
[651] | 419 | if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory |
---|
| 420 | ListExperiments{iexp}(1)=[]; |
---|
[733] | 421 | ListStruct=dir(fullfile(CampaignPath,ListExperiments{iexp})); %list files and dir in the source experiment directory |
---|
| 422 | ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray |
---|
[651] | 423 | ListFiles=ListCells(1,:);%list of dir and file names |
---|
| 424 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
---|
| 425 | check_keep=cellfun('isempty', cell_remove); |
---|
| 426 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
---|
| 427 | for ilist=1:numel(ListFiles) |
---|
[733] | 428 | if check_keep(ilist)% loop on eligible DataSeries folders |
---|
| 429 | DataSeries=fullfile(CampaignPath,ListExperiments{iexp},ListFiles{ilist});%source folder |
---|
[651] | 430 | if ~isempty(MirrorPath) |
---|
| 431 | mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist}); |
---|
[741] | 432 | if exist(mirror,'file')% if mirror already exists as a file or folder |
---|
[733] | 433 | [tild,msg]=fileattrib(mirror); |
---|
| 434 | if strcmp(msg.Name,mirror)%if the mirror name already exists as a local file or dir |
---|
[741] | 435 | if msg.directory% case of a folder |
---|
[733] | 436 | answer=msgbox_uvmat('INPUT_Y-N',['replace local folder ' msg.Name ' by a link to the source dir']); |
---|
| 437 | if strcmp(answer,'Yes') |
---|
| 438 | [ss,msg]=rmdir(mirror); |
---|
| 439 | if ss==1 |
---|
| 440 | system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder |
---|
| 441 | else |
---|
| 442 | msgbox_uvmat('ERROR',['enable to delete local folder: ' msg]); |
---|
| 443 | end |
---|
| 444 | end |
---|
[741] | 445 | else % case of an existing mirror file |
---|
[733] | 446 | answer=msgbox_uvmat('INPUT_Y-N',['replace local file ' msg.Name ' by a link to the source file']); |
---|
| 447 | if strcmp(answer,'Yes') |
---|
| 448 | delete(mirror); |
---|
[1068] | 449 | system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder |
---|
[733] | 450 | end |
---|
| 451 | end |
---|
| 452 | end |
---|
[741] | 453 | else% create mirror to the data series if needed |
---|
[1068] | 454 | system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder |
---|
[651] | 455 | end |
---|
[1063] | 456 | if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries |
---|
[733] | 457 | if check_dir(ilist) |
---|
| 458 | ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list |
---|
| 459 | end |
---|
[1063] | 460 | DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list |
---|
[651] | 461 | end |
---|
| 462 | end |
---|
[570] | 463 | end |
---|
[569] | 464 | end |
---|
| 465 | end |
---|
| 466 | end |
---|
[1063] | 467 | set(handles.DataSeries,'String',sort(DataSeries)) |
---|
[569] | 468 | |
---|
| 469 | %------------------------------------------------------------------------ |
---|
| 470 | % --- Executes on button press in CampaignDoc. |
---|
| 471 | function CampaignDoc_Callback(hObject, eventdata, handles) |
---|
[1068] | 472 | %------------------------------------------------------------------------ |
---|
[651] | 473 | answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file'); |
---|
[569] | 474 | if ~isequal(answer{1},'OK') |
---|
| 475 | return |
---|
| 476 | end |
---|
| 477 | set(handles.ListExperiments,'Value',1) |
---|
| 478 | ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories |
---|
[581] | 479 | DataviewData=get(handles.browse_data,'UserData'); |
---|
[569] | 480 | List=DataviewData.List; |
---|
| 481 | Currentpath=get(handles.SourceDir,'String'); |
---|
| 482 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
---|
| 483 | Campaign=[Campaign DirExt]; |
---|
| 484 | t=xmltree; |
---|
| 485 | t=set(t,1,'name','CampaignDoc'); |
---|
| 486 | t = attributes(t,'add',1,'source','directory'); |
---|
| 487 | SubCampaignTest=get(handles.SubCampaignTest,'Value'); |
---|
| 488 | root_uid=1; |
---|
| 489 | if SubCampaignTest |
---|
| 490 | %TO DO open an exoiting xml doc |
---|
| 491 | [t,root_uid]=add(t,1,'element','SubCampaign'); |
---|
| 492 | t =attributes(t,'add',root_uid,'DirName',Campaign); |
---|
| 493 | end |
---|
| 494 | for iexp=1:length(List.Experiment) |
---|
| 495 | set(handles.ListExperiments,'Value',iexp+1) |
---|
| 496 | drawnow |
---|
| 497 | test_mod=0; |
---|
| 498 | [t,uid_exp]=add(t,root_uid,'element','Experiment'); |
---|
| 499 | t = attributes(t,'add',uid_exp,'i',num2str(iexp)); |
---|
| 500 | ExpName=List.Experiment{iexp}.name; |
---|
| 501 | t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name); |
---|
[1068] | 502 | |
---|
[569] | 503 | if isfield(List.Experiment{iexp},'Device') |
---|
| 504 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
| 505 | [t,uid_device]=add(t,uid_exp,'element','Device'); |
---|
| 506 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
[1068] | 507 | t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name); |
---|
[569] | 508 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
| 509 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
---|
| 510 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; |
---|
| 511 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest); |
---|
| 512 | if test |
---|
[651] | 513 | disp([List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated']) |
---|
[569] | 514 | end |
---|
| 515 | if isequal(Title,'ImaDoc') |
---|
| 516 | [t,uid_xml]=add(t,uid_device,'element','ImaDoc'); |
---|
| 517 | t = attributes(t,'add',uid_xml,'source','file'); |
---|
[1068] | 518 | [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}); |
---|
[569] | 519 | end |
---|
| 520 | end |
---|
[1068] | 521 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
[569] | 522 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
| 523 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
| 524 | [t,uid_record]=add(t,uid_device,'element','Record'); |
---|
| 525 | t = attributes(t,'add',uid_record,'DirName',RecordName); |
---|
| 526 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
| 527 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
---|
| 528 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
---|
| 529 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest); |
---|
| 530 | if test |
---|
[651] | 531 | disp([FileName ' , Heading updated']) |
---|
[569] | 532 | end |
---|
| 533 | [t,uid_xml]=add(t,uid_record,'element','ImaDoc'); |
---|
| 534 | t = attributes(t,'add',uid_xml,'source','file'); |
---|
| 535 | [t]=add(t,uid_xml,'chardata',FileName); |
---|
| 536 | end |
---|
| 537 | end |
---|
| 538 | end |
---|
| 539 | end |
---|
| 540 | end |
---|
| 541 | end |
---|
| 542 | end |
---|
| 543 | set(handles.ListExperiments,'Value',1) |
---|
| 544 | outputdir=get(handles.SourceDir,'String'); |
---|
| 545 | [path,dirname]=fileparts(outputdir); |
---|
| 546 | outputfile=fullfile(outputdir,[dirname '.xml']); |
---|
| 547 | %campaigndoc(t); |
---|
| 548 | save(t,outputfile) |
---|
| 549 | |
---|
| 550 | |
---|
[1059] | 551 | |
---|
[1068] | 552 | % %------------------------------------------------------------------------ |
---|
| 553 | % % --- Executes on button press in OK. |
---|
| 554 | % %------------------------------------------------------------------------ |
---|
| 555 | % function OK_Callback(hObject, eventdata, handles) |
---|
| 556 | % |
---|
| 557 | % if strcmp(get(handles.MirrorDir,'Visible'),'on') |
---|
| 558 | % Campaign=get(handles.MirrorDir,'String'); |
---|
| 559 | % else |
---|
| 560 | % Campaign=get(handles.SourceDir,'String'); |
---|
| 561 | % end |
---|
| 562 | % handles.output=[]; |
---|
| 563 | % handles.output.Campaign=Campaign; |
---|
| 564 | % Experiment=get(handles.ListExperiments,'String'); |
---|
| 565 | % IndicesExp=get(handles.ListExperiments,'Value'); |
---|
| 566 | % if ~isequal(IndicesExp,1)% if first element ('*') selected all the experiments are selected |
---|
| 567 | % Experiment=Experiment(IndicesExp);% use the selection of the list of experiments |
---|
| 568 | % end |
---|
| 569 | % Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir |
---|
| 570 | % Device=get(handles.DataSeries,'String'); |
---|
| 571 | % Value=get(handles.DataSeries,'Value'); |
---|
| 572 | % Device=Device(Value); |
---|
| 573 | % Device=regexprep(Device,'^\+/','');% remove the +/ used to mark dir |
---|
| 574 | % Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link |
---|
| 575 | % handles.output.Experiment=Experiment; |
---|
| 576 | % handles.output.DataSeries=Device; |
---|
| 577 | % guidata(hObject, handles);% Update handles structure |
---|
| 578 | % uiresume(handles.browse_data); |
---|
| 579 | % drawnow |
---|
[651] | 580 | |
---|
| 581 | %------------------------------------------------------------------------ |
---|
| 582 | % --- Executes on button press in HELP. |
---|
| 583 | function HELP_Callback(hObject, eventdata, handles) |
---|
| 584 | path_to_uvmat=which ('uvmat');% check the path of uvmat |
---|
| 585 | pathelp=fileparts(path_to_uvmat); |
---|
| 586 | helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); |
---|
| 587 | if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') |
---|
[569] | 588 | else |
---|
[651] | 589 | web([helpfile '#dataview']) |
---|
[569] | 590 | end |
---|
| 591 | |
---|
[651] | 592 | %------------------------------------------------------------------------ |
---|
[581] | 593 | % --- Executes when user attempts to close browse_data. |
---|
[651] | 594 | %------------------------------------------------------------------------ |
---|
[1059] | 595 | function closefcn(gcbo, eventdata) |
---|
[1068] | 596 | |
---|
[1059] | 597 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 598 | if ~isempty(hseries) |
---|
| 599 | hreplicate=findobj(hseries,'Tag','Replicate'); |
---|
| 600 | set(hreplicate,'Value',0) |
---|
[569] | 601 | end |
---|
[1059] | 602 | hcalib=findobj(allchild(0),'Tag','geometry_calib'); |
---|
| 603 | if ~isempty(hcalib) |
---|
| 604 | hreplicate=findobj(hcalib,'Tag','Replicate'); |
---|
| 605 | set(hreplicate,'Value',0) |
---|
| 606 | end |
---|
[569] | 607 | |
---|
[1068] | 608 | % %------------------------------------------------------------------------ |
---|
| 609 | % % --- Executes on key press over figure1 with no controls selected. |
---|
| 610 | % %------------------------------------------------------------------------ |
---|
| 611 | % function browse_data_KeyPressFcn(hObject, eventdata, handles) |
---|
[651] | 612 | |
---|
[1068] | 613 | % % Check for "enter" or "escape" |
---|
| 614 | % if isequal(get(hObject,'CurrentKey'),'escape') |
---|
| 615 | % % User said no by hitting escape |
---|
| 616 | % handles.output = 'Cancel'; |
---|
| 617 | % |
---|
| 618 | % % Update handles structure |
---|
| 619 | % guidata(hObject, handles); |
---|
| 620 | % |
---|
| 621 | % uiresume(handles.browse_data); |
---|
| 622 | % end |
---|
| 623 | % if isequal(get(hObject,'CurrentKey'),'return') |
---|
| 624 | % uiresume(handles.browse_data); |
---|
| 625 | % end |
---|
[733] | 626 | |
---|
| 627 | |
---|
[1059] | 628 | % --- Executes on button press in Up. |
---|
[1068] | 629 | function Down_Callback(hObject, eventdata, handles) |
---|
[1059] | 630 | SourceDir=get(handles.SourceDir,'String'); |
---|
[1068] | 631 | ListExperiments=get(handles.ListExperiments,'String'); |
---|
| 632 | list_val=get(handles.ListExperiments,'Value'); |
---|
| 633 | if ischar(ListExperiments) |
---|
| 634 | Exp=ListExperiments; |
---|
| 635 | else |
---|
| 636 | Exp=ListExperiments{list_val(1)}; |
---|
| 637 | end |
---|
| 638 | Exp=regexprep(Exp,'^\+/',''); |
---|
| 639 | SourceDirNew=fullfile(SourceDir,Exp); |
---|
| 640 | set(handles.SourceDir,'String',SourceDirNew);% New SourceDir |
---|
| 641 | ListDevices=get(handles.ListDevices,'String'); |
---|
| 642 | DeviceIndices=get(handles.ListDevices,'Value'); |
---|
| 643 | set(handles.ListExperiments,'String',ListDevices);%replace Experiments by Devices |
---|
| 644 | set(handles.ListExperiments,'Value',DeviceIndices);%replace Experiments by Devices |
---|
| 645 | DataSeries=get(handles.DataSeries,'String'); |
---|
| 646 | list_val=get(handles.DataSeries,'Value'); |
---|
| 647 | set(handles.ListDevices,'String',DataSeries);%replace Devices by DataSeries |
---|
| 648 | set(handles.ListDevices,'Value',list_val);%replace Devices by DataSeries |
---|
[1059] | 649 | |
---|
[1068] | 650 | [ListFiles,indices]=list_dir_3(SourceDirNew,ListDevices(DeviceIndices),DataSeries(list_val),[]); |
---|
| 651 | set(handles.DataSeries,'String',ListFiles) |
---|
| 652 | set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input |
---|
[1059] | 653 | |
---|
[1068] | 654 | |
---|
[1059] | 655 | % --- Executes on button press in Down. |
---|
[1068] | 656 | function Up_Callback(hObject, eventdata, handles) |
---|
[1059] | 657 | SourceDir=get(handles.SourceDir,'String'); |
---|
[1068] | 658 | [SourceDir,Exp]=fileparts(SourceDir); |
---|
| 659 | set(handles.SourceDir,'String',SourceDir) |
---|
| 660 | |
---|
| 661 | % set(handles.ListExperiments,'Value',indices) |
---|
| 662 | %[ListFiles,indices]=list_dir_1(SourceDir,Exp); |
---|
| 663 | % set(handles.ListExperiments,'String',ListFiles) |
---|
| 664 | % set(handles.ListExperiments,'Value',indices) |
---|
| 665 | ListDevices=get(handles.ListDevices,'String'); |
---|
| 666 | DeviceIndices=get(handles.ListDevices,'Value'); |
---|
| 667 | set(handles.DataSeries,'String',ListDevices); |
---|
| 668 | set(handles.DataSeries,'Value',DeviceIndices); |
---|
| 669 | |
---|
[1059] | 670 | ListExperiments=get(handles.ListExperiments,'String'); |
---|
[1068] | 671 | ExpIndices=get(handles.ListExperiments,'Value'); |
---|
| 672 | set(handles.ListDevices,'String',ListExperiments); |
---|
| 673 | set(handles.ListDevices,'Value',ExpIndices); |
---|
[1063] | 674 | |
---|
[1068] | 675 | set(handles.ListExperiments,'String',{['+/' Exp]}) |
---|
| 676 | set(handles.ListExperiments,'Value',1) |
---|
[1063] | 677 | |
---|
[1068] | 678 | % ListExperiments=get(handles.ListExperiments,'String'); |
---|
| 679 | % list_val=get(handles.ListExperiments,'Value'); |
---|
| 680 | % SourceFolder=regexprep(ListExperiments{list_val(1)},'+',''); |
---|
| 681 | % set(handles.SourceDir,'String',fullfile(SourceDir,SourceFolder)) |
---|
| 682 | % DataSeries=get(handles.DataSeries,'String'); |
---|
| 683 | % ValueDevice=get(handles.DataSeries,'Value'); |
---|
| 684 | % set(handles.ListExperiments,'String',DataSeries) |
---|
| 685 | % set(handles.ListExperiments,'Value',ValueDevice) |
---|
| 686 | % ListExperiments_Callback(hObject, [], handles) |
---|
[1063] | 687 | |
---|
| 688 | |
---|
[1068] | 689 | % % --- Executes on selection change in DataSeries. |
---|
| 690 | % function DataSeries_Callback(hObject, eventdata, handles) |
---|
| 691 | % SourceDir=get(handles.SourceDir,'String'); |
---|
| 692 | % ListData=get(handles.DataSeries,'String'); |
---|
| 693 | % Folder=ListData{get(handles.DataSeries,'Value')}; |
---|
| 694 | % if ~isempty(regexp(Folder,'^\+/'))% if a folder is selected |
---|
| 695 | % Folder=regexprep(Folder,'\+/',''); |
---|
| 696 | % ListExperiments=get(handles.ListExperiments,'String'); |
---|
| 697 | % list_val=get(handles.ListExperiments,'Value'); |
---|
| 698 | % for iexp=1:numel(list_val) |
---|
| 699 | % ExpName=regexprep(ListExperiments{list_val(iexp)},'\+/',''); |
---|
| 700 | % FullName=fullfile(SourceDir,ExpName,Folder); |
---|
| 701 | % dd=dir(FullName); |
---|
| 702 | % check_sub=1; |
---|
| 703 | % for idir=1:numel(dd) |
---|
| 704 | % ListData{ilist}=dd(ilist).name; |
---|
| 705 | % if dd(ilist).isdir && ~strcmp(dd(ilist).name,'.')&& ~strcmp(dd(ilist).name,'..')&& isempty(regexp(dd(ilist).name,'^_LOG'))... |
---|
| 706 | % && isempty(regexp(dd(ilist).name,'^_LOG'))&& isempty(regexp(dd(ilist).name,'^_XML')) |
---|
| 707 | % check_sub=1; |
---|
| 708 | % ListData{ilist}=['+/' dd(ilist).name]; |
---|
| 709 | % end |
---|
| 710 | % end |
---|
| 711 | % if check_sub |
---|
| 712 | % set(handles.ListDevices,'String',ListData); |
---|
| 713 | % set(handles.ListDevices,'Visible','on'); |
---|
| 714 | % set(handles.DataSeries,'String',ListData) |
---|
| 715 | % break |
---|
| 716 | % end |
---|
| 717 | % end |
---|
| 718 | % end |
---|
| 719 | |
---|
| 720 | % % --- Executes on button press in CheckDevices. |
---|
| 721 | % function CheckDevices_Callback(hObject, eventdata, handles) |
---|
| 722 | % if get(handles.CheckDevices,'Value') |
---|
| 723 | % set(handles.ListDevices,'Visible','on') |
---|
| 724 | % ListDevices=get(handles.DataSeries,'String'); |
---|
| 725 | % Index=get(handles.DataSeries,'Value'); |
---|
| 726 | % set(handles.ListDevices,'String',ListDevices) |
---|
| 727 | % set(handles.ListDevices,'Value',Index) |
---|
| 728 | % set(handles.DataSeries,'Value',1) |
---|
| 729 | % if strcmp(get(handles.MirrorDir,'Visible'),'on') |
---|
| 730 | % MirrorPath=get(handles.MirrorDir,'String'); |
---|
| 731 | % else |
---|
| 732 | % MirrorPath=get(handles.SourceDir,'String'); |
---|
| 733 | % end |
---|
| 734 | % IndexExperiment=get(handles.ListExperiments,'Value'); |
---|
| 735 | % ListExperiment=get(handles.ListExperiments,'String'); |
---|
| 736 | % Experiment=ListExperiment{get(handles.ListExperiments,'Value')}; |
---|
| 737 | % Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir |
---|
| 738 | % Experiment=regexprep(Experiment,'^~','');% remove the ~ used to mark symbolic link |
---|
| 739 | % Device=regexprep(ListDevices{Index},'^\+/','');% remove the +/ used to mark dir |
---|
| 740 | % Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link |
---|
| 741 | % DataSeries=dir(fullfile(MirrorPath,Experiment,Device)); |
---|
| 742 | % DataSeriesCell=struct2cell(DataSeries); |
---|
| 743 | % set(handles.DataSeries,'String',DataSeriesCell(1,:)') |
---|
| 744 | % else |
---|
| 745 | % ListDevices=get(handles.ListDevices,'String'); |
---|
| 746 | % Index=get(handles.ListDevices,'Value'); |
---|
| 747 | % set(handles.ListDevices,'Visible','off') |
---|
| 748 | % set(handles.DataSeries,'String',ListDevices) |
---|
| 749 | % set(handles.DataSeries,'Value',Index) |
---|
| 750 | % end |
---|