%'browse_data': function for scanning directories in a campaign %------------------------------------------------------------------------ % function varargout = series(varargin) % associated with the GUI browse_data.fig %======================================================================= % Copyright 2008-2024, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France % http://www.legi.grenoble-inp.fr % Joel.Sommeria - Joel.Sommeria (A) univ-grenoble-alpes.fr % % This file is part of the toolbox UVMAT. % % UVMAT is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published % by the Free Software Foundation; either version 2 of the license, % or (at your option) any later version. % % UVMAT is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License (see LICENSE.txt) for more details. %======================================================================= function varargout = browse_data(varargin) % Last Modified by GUIDE v2.5 11-Jul-2019 18:52:06 % Begin initialization code - DO NOT EDIT gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @browse_data_OpeningFcn, ... 'gui_OutputFcn', @browse_data_OutputFcn, ... 'gui_LayoutFcn', [] , ... 'gui_Callback', []); if nargin && ischar(varargin{1}) gui_State.gui_Callback = str2func(varargin{1}); end if nargout [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); else gui_mainfcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT %------------------------------------------------------------------------ % --- Executes just before browse_data is made visible. function browse_data_OpeningFcn(hObject, eventdata, handles, InputDir,EnableMirror,MultiDevices) %------------------------------------------------------------------------ %% Choose default command line output for browse_data handles.output =hObject;% 'Cancel'; %% Update handles structure guidata(hObject, handles); set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) set(hObject,'DeleteFcn',{@closefcn})% %% Determine the position of the dialog - centered on the screen FigPos=get(0,'DefaultFigurePosition'); OldUnits = get(hObject, 'Units'); set(hObject, 'Units', 'pixels'); OldPos = get(hObject,'Position'); FigWidth = OldPos(3); FigHeight = OldPos(4); ScreenUnits=get(0,'Units'); set(0,'Units','pixels'); ScreenSize=get(0,'ScreenSize'); set(0,'Units',ScreenUnits); FigPos(1)=1/2*(ScreenSize(3)-FigWidth); FigPos(2)=2/3*(ScreenSize(4)-FigHeight); FigPos(3:4)=[FigWidth FigHeight]; set(hObject, 'Position', FigPos); set(hObject, 'Units', OldUnits); if exist('EnableMirror','var') && strcmp(EnableMirror,'on') set(handles.CreateMirror,'Visible','on') set(handles.mirror_txt,'Visible','on') else set(handles.CreateMirror,'Visible','off') set(handles.mirror_txt,'Visible','off') end %% initialize the GUI if isempty(regexp(InputDir,'^http:'))&& ~(exist('InputDir','var') && ischar(InputDir) && exist(InputDir,'dir')) InputDir=pwd;% current dir is the starting data series by default end if ischar(InputDir),InputDir={InputDir};end for ilist=1:numel(InputDir) [ExpWithPath,DataSeries{ilist},Ext]=fileparts(InputDir{ilist}); DataSeries{ilist}=['+/' DataSeries{ilist} Ext]; [Experiment{ilist},Device{ilist},Ext]=fileparts(ExpWithPath); Device{ilist}=['+/' Device{ilist} Ext]; [SourceDir{ilist},Experiment{ilist},Ext]=fileparts(Experiment{ilist}); Experiment{ilist}=['+/' Experiment{ilist} Ext]; if ~strcmp(SourceDir{ilist},SourceDir{1})||~strcmp(Experiment{ilist},Experiment{1}) msgbox_uvmat('ERROR','replicate cannot be used with multiple root folders') return end if ~strcmp(DataSeries{ilist},DataSeries{1}) set(handles.DataSeries,'enable','off') end if ~strcmp(Device{ilist},Device{1}) set(handles.ListDevices,'enable','off') end end s=[]; if isempty(s) %a source dir has been opened set(handles.SourceDir,'String',SourceDir{1}); set(handles.MirrorDir,'Visible','off');% no mirror dir display set(handles.CreateMirror,'String','create_mirror') end set(handles.DataSeries,'String',DataSeries); set(handles.DataSeries,'Value',(1:numel(DataSeries))); set(handles.ListDevices,'String',Device); set(handles.ListDevices,'Value',(1:numel(Device))); errormsg=scan_campaign(handles,SourceDir{1},Experiment{1}); if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) return end set(hObject,'Visible','on') drawnow %------------------------------------------------------------------------ % --- Outputs from this function are returned to the command line. function varargout = browse_data_OutputFcn(hObject, eventdata, handles) %------------------------------------------------------------------------ % Get default command line output from handles structure varargout{1} = handles.output; %%%%%%%%%%%%%%%%%%delete(handles.browse_data) %------------------------------------------------------------------------ % --- Executes on button press in SourceDir. function SourceDir_Callback(hObject, eventdata, handles) SourceDir=get(handles.SourceDir,'String'); ListExp=get(handles.ListExperiments,'String'); ListExp=ListExp(get(handles.ListExperiments,'Value')); errormsg=scan_campaign(handles,SourceDir,ListExp); if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) return end %------------------------------------------------------------------------ %------------------------------------------------------------------------ % --- Executes on button press in CreateMirror. function CreateMirror_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ set(handles.SourceDir,'BackgroundColor',[1 1 0])% indicate action of button by yellow color drawnow SourcePath=get(handles.SourceDir,'String'); if ~isempty(regexp(SourcePath,'^http')) SourcePath=pwd; SourcePath=regexprep(SourcePath,'^\/.fsnet','/fsnet'); end ProjectList=get(handles.ListExperiments,'String'); ProjectName=ProjectList{get(handles.ListExperiments,'Value')}; ProjectName=regexprep(ProjectName,'^\+/',''); if strcmp(get(handles.MirrorDir,'Visible'),'on') MirrorDir=get(handles.MirrorDir,'String');% name of the mirror folder else% create the mirror folder if it does not exist MirrorRoot=uigetfile_uvmat('select the folder which must contain the mirror directory:',SourcePath,'uigetdir'); if isempty(MirrorRoot) return elseif strcmp(MirrorRoot,SourcePath) msgbox_uvmat('ERROR','The mirror folder must be different from the source') return else MirrorDir=fullfile(MirrorRoot,ProjectName); end if exist(MirrorDir,'dir') msgbox_uvmat('ERROR',['The folder ' MirrorDir ' chosen as new mirror campaign already exists']) return else [s,errormsg]=mkdir(MirrorDir);% create the mirror dir if s~=1 msgbox_uvmat('ERROR',['error in creating ' MirrorDir ': ' errormsg]) return end end SourceDir=fullfile(SourcePath,ProjectName); MirrorDoc.SourceDir=SourceDir; t=struct2xml(MirrorDoc); set(t,1,'name','DataTree'); save(t,fullfile(MirrorDir,[ProjectName '.xml']))% create an xml file in the mirror folder to indicate its source folder set(handles.MirrorDir,'String',MirrorDir) set(handles.MirrorDir,'Visible','on') set(handles.CreateMirror,'String','update_mirror') end ExpName={''}; %% update the mirror from the source dir if exist(SourceDir,'dir') hdir=dir(SourceDir); %list files and dirs idir=0; for ilist=1:length(hdir) if hdir(ilist).isdir% scan all subfolders dirname=hdir(ilist).name;% if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')%skip subfolder beginning by '0' idir=idir+1; mirror=fullfile(MirrorDir,hdir(ilist).name);% corresponding name in the mirror if ~exist(mirror,'dir') mkdir(mirror)% create the mirror folder if it does not exist end ExpName{idir}=['+/' hdir(ilist).name];% insert '+/' in the list to show that it is a folder end % look for the list of 'devices' else %warning for isolated files end end set(handles.ListExperiments,'String',[{'*'};ExpName']) set(handles.ListExperiments,'Value',1) update_experiments(handles,[{'*'};ExpName'],SourceDir,MirrorDir) % ListExperiments_Callback(hObject, eventdata, handles) % list the content of the experiment else msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) end set(handles.SourceDir,'BackgroundColor',[1 1 1]) %------------------------------------------------------------------------ % List the experiments in a campaign, filling the menu ListExperiments %------------------------------------------------------------------------ function errormsg=scan_campaign(handles,SourceDir,Experiment) %------------------------------------------------------------------------ errormsg=''; if ~isempty(regexp(SourceDir,'^http'))|| exist(SourceDir,'dir') ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case if numel(ListStruct)>1000% A campaign folder must contain maily a list of 'experiment' sub-folders errormsg=[SourceDir ' contains too many items (>1000) to be a Project folder']; return end [ListFiles,index]=list_dir_1(SourceDir,Experiment); set(handles.ListExperiments,'String',ListFiles) set(handles.ListExperiments,'Value',index)% initialise the menu selection with the folder defined by the input ListExperiments_Callback([],[], handles) else msgbox_uvmat('ERROR',['The input ' Campaign ' is not a directory']) end %------------------------------------------------------------------------ % --- Executes on selection change in ListExperiments. %------------------------------------------------------------------------ function ListExperiments_Callback(hObject, eventdata, handles) if strcmp(get(handles.MirrorDir,'Visible'),'on') SourceDir=get(handles.MirrorDir,'String'); else SourceDir=get(handles.SourceDir,'String'); end ListExperiments=get(handles.ListExperiments,'String'); list_val=get(handles.ListExperiments,'Value'); ListExperiments=ListExperiments(list_val);%choose the selected experiments ListDevices=get(handles.ListDevices,'String');% list of devices list_val=get(handles.ListDevices,'Value');% currently selected devices Device=''; if numel(ListDevices)>=list_val Device=ListDevices(list_val);%choose selected devices end check_fix=strcmp(get(handles.ListDevices,'enable'),'off'); [ListFiles,indices]=list_dir_2(SourceDir,ListExperiments,Device,check_fix); set(handles.ListDevices,'String',ListFiles) set(handles.ListDevices,'Value',indices)% initialise the menu selection with the folder defined by the input ListDevices_Callback([],[], handles) %------------------------------------------------------------------------ % --- Executes on selection change in ListExperiments. %------------------------------------------------------------------------ function ListDevices_Callback(hObject, eventdata, handles) ListDevices=get(handles.ListDevices,'String');% list of devices list_val=get(handles.ListDevices,'Value');% currently selected devices ListDevices=ListDevices(list_val);%choose selected devices if strcmp(get(handles.MirrorDir,'Visible'),'on') SourceDir=get(handles.MirrorDir,'String'); else SourceDir=get(handles.SourceDir,'String'); end ListExperiments=get(handles.ListExperiments,'String'); list_val=get(handles.ListExperiments,'Value'); ListExperiments=ListExperiments(list_val);%choose the selected experiments DataSeries=get(handles.DataSeries,'String'); list_val=get(handles.DataSeries,'Value'); if numel(DataSeries)>=list_val DataSeries=DataSeries(list_val); else DataSeries=[]; end check_fix=strcmp(get(handles.DataSeries,'enable'),'off'); [ListFiles,indices]=list_dir_3(SourceDir,ListExperiments,ListDevices,DataSeries,check_fix); set(handles.DataSeries,'String',ListFiles) set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input %------------------------------------------------------------------------ % --- List the DataSeries when a set of experiments is selected %------------------------------------------------------------------------ % function list_dataseries(handles,ListExperiments,MirrorPath) % % DataSeries={}; % for iexp=1:numel(ListExperiments) % if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory % ListExperiments{iexp}(1)=[];%remove the first char '+' used to mark folders % ListStruct=dir(fullfile(MirrorPath,ListExperiments{iexp})); %list files and dir in the source experiment directory % ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray % ListFiles=ListCells(1,:);%list of dir and file names % cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) % cell_remove_tild=regexp(ListFiles,'~$');% detect tild the end of file nqme (do not list) % check_keep=cellfun('isempty', cell_remove) & cellfun('isempty', cell_remove_tild); % check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files % for ilist=1:numel(ListFiles) % if check_keep(ilist)% loop on eligible DataSeries folders % mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist});%source folder % if ~exist(mirror,'file') && ~exist(mirror,'dir')% if the name is a broken link % delete(mirror)% delete broken link % else %update the list of dataSeries % [tild,msg]=fileattrib(mirror); % if check_dir(ilist) % ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list % end % if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries % DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list % end % end % end % end % end % end % if get(handles.CheckDevices,'Value') % set(handles.ListDevices,'Value',1) % set(handles.ListDevices,'String',sort(DataSeries)) % CheckDevices_Callback([],[], handles) % else % set(handles.DataSeries,'Value',1) % set(handles.DataSeries,'String',sort(DataSeries)) % end %------------------------------------------------------------------------ % Provide a list to display %------------------------------------------------------------------------ function [ListFiles,indices]=list_dir_1(SourceDir,ListSub) ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray ListFiles=ListCells(1,:); index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) check_keep=cellfun('isempty', cell_remove); ListFiles=sort((ListFiles(check_keep))'); if ischar(ListSub) indices=find(strcmp(ListSub,ListFiles)); else indices=[]; for ilist=1:numel(ListSub) index=find(strcmp(ListSub{ilist},ListFiles)); indices=[indices index]; end end if isempty(indices), indices=1; end %------------------------------------------------------------------------ % Provide a list to display %------------------------------------------------------------------------ function [ListFilesTot,indices]=list_dir_2(SourceDir,ListDir,ListSub,check_fix) ListFilesTot={}; for ilist=1:numel(ListDir) if ~isempty(regexp(ListDir{ilist},'^\+/')) ListDir{ilist}=regexprep(ListDir{ilist},'^\+/',''); ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist})); %list files and dirs, extende to OpenDAP case ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray ListFiles=ListCells(1,:); index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) check_keep=cellfun('isempty', cell_remove); ListFilesTot=[ListFilesTot (ListFiles(check_keep))]; end end ListFilesTot=unique(ListFilesTot); if ischar(ListSub) indices=find(strcmp(ListSub,ListFilesTot)); else indices=[]; for ilist=1:numel(ListSub) index=find(strcmp(ListSub{ilist},ListFilesTot)); indices=[indices index]; end if check_fix index_init=1:numel(ListFilesTot); %indices=sort(indices) index_init(indices)=[]; ListFilesTot=ListFilesTot([indices index_init]); indices=1:numel(indices); end end if isempty(indices), indices=1; end %------------------------------------------------------------------------ % Provide the list (ListFilesTot) to display in DataSeries with the selected indices %------------------------------------------------------------------------ function [ListFilesTot,indices]=list_dir_3(SourceDir,ListDir,ListSub,ListSubSub,check_fix) % INPUT: %SourceDir: path to the displayed directories %ListDir: list of file and folder names under SourceDir (column 'Experiments') %ListSub: list of file and folder in the second column 'Devices') %ListSubSub: prvious list of file and folder in the third column 'DataSeries', used to mark the selected indices ListFilesTot={}; for ilist=1:numel(ListDir) if ~isempty(regexp(ListDir{ilist},'^\+/')) ListDir{ilist}=regexprep(ListDir{ilist},'^\+/',''); for isub=1:numel(ListSub) if ~isempty(regexp(ListSub{isub},'^\+/')) ListSub{isub}=regexprep(ListSub{isub},'^\+/',''); ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist},ListSub{isub})); %list files and dirs, extende to OpenDAP case ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray ListFiles=ListCells(1,:); check_xml=~cellfun('isempty',regexp(ListFiles,'(\.xml|~)$'));% detect non xml files and files not marked by ~ index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files nbfiles=numel(find(~check_xml & ~check_dir));% number of non xml files check_dir=check_dir & cellfun('isempty', regexp(ListFiles,'^(-|\.|\+/\.)'));% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display %cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) ListFiles=ListFiles(check_dir | check_xml); ListFilesTot=[ListFilesTot ListFiles]; if nbfiles>0 ListFilesTot=[ListFilesTot {[num2str(nbfiles) ' files']}]; end end end end end ListFilesTot=unique(ListFilesTot); if ischar(ListSubSub) indices=find(strcmp(ListSubSub,ListFilesTot)); else indices=[]; for ilist=1:numel(ListSubSub) index=find(strcmp(ListSubSub{ilist},ListFilesTot)); if check_fix && isempty(index) ListFilesTot=[ListFilesTot {['---' ListSubSub{ilist}]}]; index=numel(ListFilesTot); end indices=[indices index]; end if check_fix index_init=1:numel(ListFilesTot); index_init(indices)=[]; ListFilesTot=ListFilesTot([indices index_init]); indices=1:numel(indices); end end if isempty(indices), indices=1; end %------------------------------------------------------------------------ % --- Executes when the mirror is created or updated %------------------------------------------------------------------------ function update_experiments(handles,ListExperiments,CampaignPath,MirrorPath) DataSeries={}; for iexp=1:numel(ListExperiments) if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory ListExperiments{iexp}(1)=[]; ListStruct=dir(fullfile(CampaignPath,ListExperiments{iexp})); %list files and dir in the source experiment directory ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray ListFiles=ListCells(1,:);%list of dir and file names cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) check_keep=cellfun('isempty', cell_remove); index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files for ilist=1:numel(ListFiles) if check_keep(ilist)% loop on eligible DataSeries folders DataSeries=fullfile(CampaignPath,ListExperiments{iexp},ListFiles{ilist});%source folder if ~isempty(MirrorPath) mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist}); if exist(mirror,'file')% if mirror already exists as a file or folder [tild,msg]=fileattrib(mirror); if strcmp(msg.Name,mirror)%if the mirror name already exists as a local file or dir if msg.directory% case of a folder answer=msgbox_uvmat('INPUT_Y-N',['replace local folder ' msg.Name ' by a link to the source dir']); if strcmp(answer,'Yes') [ss,msg]=rmdir(mirror); if ss==1 system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder else msgbox_uvmat('ERROR',['enable to delete local folder: ' msg]); end end else % case of an existing mirror file answer=msgbox_uvmat('INPUT_Y-N',['replace local file ' msg.Name ' by a link to the source file']); if strcmp(answer,'Yes') delete(mirror); system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder end end end else% create mirror to the data series if needed system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder end if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries if check_dir(ilist) ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list end DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list end end end end end end set(handles.DataSeries,'String',sort(DataSeries)) %------------------------------------------------------------------------ % --- Executes on button press in CampaignDoc. function CampaignDoc_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file'); if ~isequal(answer{1},'OK') return end set(handles.ListExperiments,'Value',1) ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories DataviewData=get(handles.browse_data,'UserData'); List=DataviewData.List; Currentpath=get(handles.SourceDir,'String'); [Currentpath,Campaign,DirExt]=fileparts(Currentpath); Campaign=[Campaign DirExt]; t=xmltree; t=set(t,1,'name','CampaignDoc'); t = attributes(t,'add',1,'source','directory'); SubCampaignTest=get(handles.SubCampaignTest,'Value'); root_uid=1; if SubCampaignTest %TO DO open an exoiting xml doc [t,root_uid]=add(t,1,'element','SubCampaign'); t =attributes(t,'add',root_uid,'DirName',Campaign); end for iexp=1:length(List.Experiment) set(handles.ListExperiments,'Value',iexp+1) drawnow test_mod=0; [t,uid_exp]=add(t,root_uid,'element','Experiment'); t = attributes(t,'add',uid_exp,'i',num2str(iexp)); ExpName=List.Experiment{iexp}.name; t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name); if isfield(List.Experiment{iexp},'Device') for idevice=1:length(List.Experiment{iexp}.Device) [t,uid_device]=add(t,uid_exp,'element','Device'); DeviceName=List.Experiment{iexp}.Device{idevice}.name; t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name); if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest); if test disp([List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated']) end if isequal(Title,'ImaDoc') [t,uid_xml]=add(t,uid_device,'element','ImaDoc'); t = attributes(t,'add',uid_xml,'source','file'); [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}); end end elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; [t,uid_record]=add(t,uid_device,'element','Record'); t = attributes(t,'add',uid_record,'DirName',RecordName); if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest); if test disp([FileName ' , Heading updated']) end [t,uid_xml]=add(t,uid_record,'element','ImaDoc'); t = attributes(t,'add',uid_xml,'source','file'); [t]=add(t,uid_xml,'chardata',FileName); end end end end end end end set(handles.ListExperiments,'Value',1) outputdir=get(handles.SourceDir,'String'); [path,dirname]=fileparts(outputdir); outputfile=fullfile(outputdir,[dirname '.xml']); %campaigndoc(t); save(t,outputfile) % %------------------------------------------------------------------------ % % --- Executes on button press in OK. % %------------------------------------------------------------------------ % function OK_Callback(hObject, eventdata, handles) % % if strcmp(get(handles.MirrorDir,'Visible'),'on') % Campaign=get(handles.MirrorDir,'String'); % else % Campaign=get(handles.SourceDir,'String'); % end % handles.output=[]; % handles.output.Campaign=Campaign; % Experiment=get(handles.ListExperiments,'String'); % IndicesExp=get(handles.ListExperiments,'Value'); % if ~isequal(IndicesExp,1)% if first element ('*') selected all the experiments are selected % Experiment=Experiment(IndicesExp);% use the selection of the list of experiments % end % Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir % Device=get(handles.DataSeries,'String'); % Value=get(handles.DataSeries,'Value'); % Device=Device(Value); % Device=regexprep(Device,'^\+/','');% remove the +/ used to mark dir % Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link % handles.output.Experiment=Experiment; % handles.output.DataSeries=Device; % guidata(hObject, handles);% Update handles structure % uiresume(handles.browse_data); % drawnow %------------------------------------------------------------------------ % --- Executes on button press in HELP. function HELP_Callback(hObject, eventdata, handles) path_to_uvmat=which ('uvmat');% check the path of uvmat pathelp=fileparts(path_to_uvmat); helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') else web([helpfile '#dataview']) end %------------------------------------------------------------------------ % --- Executes when user attempts to close browse_data. %------------------------------------------------------------------------ function closefcn(gcbo, eventdata) hseries=findobj(allchild(0),'Tag','series'); if ~isempty(hseries) hreplicate=findobj(hseries,'Tag','Replicate'); set(hreplicate,'Value',0) end hcalib=findobj(allchild(0),'Tag','geometry_calib'); if ~isempty(hcalib) hreplicate=findobj(hcalib,'Tag','Replicate'); set(hreplicate,'Value',0) end % %------------------------------------------------------------------------ % % --- Executes on key press over figure1 with no controls selected. % %------------------------------------------------------------------------ % function browse_data_KeyPressFcn(hObject, eventdata, handles) % % Check for "enter" or "escape" % if isequal(get(hObject,'CurrentKey'),'escape') % % User said no by hitting escape % handles.output = 'Cancel'; % % % Update handles structure % guidata(hObject, handles); % % uiresume(handles.browse_data); % end % if isequal(get(hObject,'CurrentKey'),'return') % uiresume(handles.browse_data); % end % --- Executes on button press in Up. function Down_Callback(hObject, eventdata, handles) SourceDir=get(handles.SourceDir,'String'); ListExperiments=get(handles.ListExperiments,'String'); list_val=get(handles.ListExperiments,'Value'); if ischar(ListExperiments) Exp=ListExperiments; else Exp=ListExperiments{list_val(1)}; end Exp=regexprep(Exp,'^\+/',''); SourceDirNew=fullfile(SourceDir,Exp); set(handles.SourceDir,'String',SourceDirNew);% New SourceDir ListDevices=get(handles.ListDevices,'String'); DeviceIndices=get(handles.ListDevices,'Value'); set(handles.ListExperiments,'String',ListDevices);%replace Experiments by Devices set(handles.ListExperiments,'Value',DeviceIndices);%replace Experiments by Devices DataSeries=get(handles.DataSeries,'String'); list_val=get(handles.DataSeries,'Value'); set(handles.ListDevices,'String',DataSeries);%replace Devices by DataSeries set(handles.ListDevices,'Value',list_val);%replace Devices by DataSeries [ListFiles,indices]=list_dir_3(SourceDirNew,ListDevices(DeviceIndices),DataSeries(list_val),[],0); set(handles.DataSeries,'String',ListFiles) set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input % --- Executes on button press in Down. function Up_Callback(hObject, eventdata, handles) SourceDir=get(handles.SourceDir,'String'); [SourceDir,Exp]=fileparts(SourceDir); set(handles.SourceDir,'String',SourceDir) % set(handles.ListExperiments,'Value',indices) %[ListFiles,indices]=list_dir_1(SourceDir,Exp); % set(handles.ListExperiments,'String',ListFiles) % set(handles.ListExperiments,'Value',indices) ListDevices=get(handles.ListDevices,'String'); DeviceIndices=get(handles.ListDevices,'Value'); set(handles.DataSeries,'String',ListDevices); set(handles.DataSeries,'Value',DeviceIndices); ListExperiments=get(handles.ListExperiments,'String'); ExpIndices=get(handles.ListExperiments,'Value'); set(handles.ListDevices,'String',ListExperiments); set(handles.ListDevices,'Value',ExpIndices); set(handles.ListExperiments,'String',{['+/' Exp]}) set(handles.ListExperiments,'Value',1) % ListExperiments=get(handles.ListExperiments,'String'); % list_val=get(handles.ListExperiments,'Value'); % SourceFolder=regexprep(ListExperiments{list_val(1)},'+',''); % set(handles.SourceDir,'String',fullfile(SourceDir,SourceFolder)) % DataSeries=get(handles.DataSeries,'String'); % ValueDevice=get(handles.DataSeries,'Value'); % set(handles.ListExperiments,'String',DataSeries) % set(handles.ListExperiments,'Value',ValueDevice) % ListExperiments_Callback(hObject, [], handles) % % --- Executes on selection change in DataSeries. % function DataSeries_Callback(hObject, eventdata, handles) % SourceDir=get(handles.SourceDir,'String'); % ListData=get(handles.DataSeries,'String'); % Folder=ListData{get(handles.DataSeries,'Value')}; % if ~isempty(regexp(Folder,'^\+/'))% if a folder is selected % Folder=regexprep(Folder,'\+/',''); % ListExperiments=get(handles.ListExperiments,'String'); % list_val=get(handles.ListExperiments,'Value'); % for iexp=1:numel(list_val) % ExpName=regexprep(ListExperiments{list_val(iexp)},'\+/',''); % FullName=fullfile(SourceDir,ExpName,Folder); % dd=dir(FullName); % check_sub=1; % for idir=1:numel(dd) % ListData{ilist}=dd(ilist).name; % if dd(ilist).isdir && ~strcmp(dd(ilist).name,'.')&& ~strcmp(dd(ilist).name,'..')&& isempty(regexp(dd(ilist).name,'^_LOG'))... % && isempty(regexp(dd(ilist).name,'^_LOG'))&& isempty(regexp(dd(ilist).name,'^_XML')) % check_sub=1; % ListData{ilist}=['+/' dd(ilist).name]; % end % end % if check_sub % set(handles.ListDevices,'String',ListData); % set(handles.ListDevices,'Visible','on'); % set(handles.DataSeries,'String',ListData) % break % end % end % end % % --- Executes on button press in CheckDevices. % function CheckDevices_Callback(hObject, eventdata, handles) % if get(handles.CheckDevices,'Value') % set(handles.ListDevices,'Visible','on') % ListDevices=get(handles.DataSeries,'String'); % Index=get(handles.DataSeries,'Value'); % set(handles.ListDevices,'String',ListDevices) % set(handles.ListDevices,'Value',Index) % set(handles.DataSeries,'Value',1) % if strcmp(get(handles.MirrorDir,'Visible'),'on') % MirrorPath=get(handles.MirrorDir,'String'); % else % MirrorPath=get(handles.SourceDir,'String'); % end % IndexExperiment=get(handles.ListExperiments,'Value'); % ListExperiment=get(handles.ListExperiments,'String'); % Experiment=ListExperiment{get(handles.ListExperiments,'Value')}; % Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir % Experiment=regexprep(Experiment,'^~','');% remove the ~ used to mark symbolic link % Device=regexprep(ListDevices{Index},'^\+/','');% remove the +/ used to mark dir % Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link % DataSeries=dir(fullfile(MirrorPath,Experiment,Device)); % DataSeriesCell=struct2cell(DataSeries); % set(handles.DataSeries,'String',DataSeriesCell(1,:)') % else % ListDevices=get(handles.ListDevices,'String'); % Index=get(handles.ListDevices,'Value'); % set(handles.ListDevices,'Visible','off') % set(handles.DataSeries,'String',ListDevices) % set(handles.DataSeries,'Value',Index) % end % --- Executes when user attempts to close browse_data. function browse_data_CloseRequestFcn(hObject, eventdata, handles) % hObject handle to browse_data (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: delete(hObject) closes the figure delete(hObject);