1 | %'browse_data': function for scanning directories in a campaign |
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2 | %------------------------------------------------------------------------ |
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3 | % function varargout = series(varargin) |
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4 | % associated with the GUI browse_data.fig |
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5 | |
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6 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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7 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. |
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8 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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9 | % This file is part of the toolbox UVMAT. |
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10 | % |
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11 | % UVMAT is free software; you can redistribute it and/or modify |
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12 | % it under the terms of the GNU General Public License as published by |
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13 | % the Free Software Foundation; either version 2 of the License, or |
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14 | % (at your option) any later version. |
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15 | % |
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16 | % UVMAT is distributed in the hope that it will be useful, |
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17 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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19 | % GNU General Public License (file UVMAT/COPYING.txt) for more details. |
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20 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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21 | |
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22 | function varargout = browse_data(varargin) |
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23 | |
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24 | % Last Modified by GUIDE v2.5 07-Mar-2013 18:55:00 |
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25 | |
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26 | % Begin initialization code - DO NOT EDIT |
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27 | gui_Singleton = 1; |
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28 | gui_State = struct('gui_Name', mfilename, ... |
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29 | 'gui_Singleton', gui_Singleton, ... |
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30 | 'gui_OpeningFcn', @browse_data_OpeningFcn, ... |
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31 | 'gui_OutputFcn', @browse_data_OutputFcn, ... |
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32 | 'gui_LayoutFcn', [] , ... |
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33 | 'gui_Callback', []); |
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34 | if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback','once')) |
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35 | gui_State.gui_Callback = str2func(varargin{1}); |
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36 | end |
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37 | |
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38 | if nargout |
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39 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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40 | else |
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41 | gui_mainfcn(gui_State, varargin{:}); |
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42 | end |
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43 | % End initialization code - DO NOT EDIT |
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44 | |
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45 | %------------------------------------------------------------------------ |
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46 | % --- Executes just before browse_data is made visible. |
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47 | function browse_data_OpeningFcn(hObject, eventdata, handles, Campaign) |
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48 | %------------------------------------------------------------------------ |
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49 | |
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50 | %% Choose default command line output for browse_data |
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51 | handles.output = 'Cancel'; |
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52 | |
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53 | %% Update handles structure |
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54 | guidata(hObject, handles); |
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55 | set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) |
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56 | |
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57 | %% Determine the position of the dialog - centered on the screen |
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58 | FigPos=get(0,'DefaultFigurePosition'); |
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59 | OldUnits = get(hObject, 'Units'); |
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60 | set(hObject, 'Units', 'pixels'); |
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61 | OldPos = get(hObject,'Position'); |
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62 | FigWidth = OldPos(3); |
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63 | FigHeight = OldPos(4); |
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64 | ScreenUnits=get(0,'Units'); |
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65 | set(0,'Units','pixels'); |
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66 | ScreenSize=get(0,'ScreenSize'); |
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67 | set(0,'Units',ScreenUnits); |
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68 | FigPos(1)=1/2*(ScreenSize(3)-FigWidth); |
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69 | FigPos(2)=2/3*(ScreenSize(4)-FigHeight); |
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70 | FigPos(3:4)=[FigWidth FigHeight]; |
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71 | set(hObject, 'Position', FigPos); |
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72 | set(hObject, 'Units', OldUnits); |
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73 | % |
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74 | % if exist('GeometryCalib','var') |
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75 | % DataviewData.GeometryCalib=GeometryCalib; |
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76 | % set(hObject,'UserData',DataviewData) |
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77 | % end |
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78 | if exist('Campaign','var') |
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79 | [CampaignPath,CampaignName]=fileparts(Campaign); |
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80 | RootXml=fullfile(Campaign,[CampaignName '.xml']); |
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81 | s=[]; |
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82 | if exist(RootXml,'file') |
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83 | [s,Heading]=xml2struct(RootXml);%read the xml file |
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84 | if isfield(s,'SourceDir') |
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85 | set(handles.SourceDir,'String',s.SourceDir);%display the source dir if a mirror has been opened |
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86 | set(handles.MirrorDir,'Visible','on');% mirror dir display |
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87 | set(handles.MirrorDir,'String',Campaign);%display the opened mirror dir |
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88 | set(handles.CreateMirror,'String','update_mirror') |
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89 | end |
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90 | end |
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91 | if isempty(s) %a source dir has been opened |
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92 | set(handles.SourceDir,'String',Campaign); |
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93 | set(handles.MirrorDir,'Visible','off');% no mirror dir display |
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94 | set(handles.CreateMirror,'String','create_mirror') |
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95 | end |
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96 | scan_campaign(handles,Campaign) |
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97 | set(handles.OK,'Visible','on') |
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98 | set(handles.Cancel,'Visible','on') |
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99 | set(handles.browse_data,'WindowStyle','modal')% Make the GUI modal |
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100 | set(hObject,'Visible','on') |
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101 | drawnow |
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102 | % UIWAIT makes GUI wait for user response (see UIRESUME) |
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103 | uiwait(handles.browse_data); |
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104 | end |
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105 | |
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106 | %------------------------------------------------------------------------ |
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107 | % --- Outputs from this function are returned to the command line. |
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108 | function varargout = browse_data_OutputFcn(hObject, eventdata, handles) |
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109 | %------------------------------------------------------------------------ |
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110 | % Get default command line output from handles structure |
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111 | varargout{1} = handles.output; |
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112 | delete(handles.browse_data) |
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113 | |
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114 | %------------------------------------------------------------------------ |
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115 | % --- Executes on button press in CreateMirror. |
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116 | function CreateMirror_Callback(hObject, eventdata, handles) |
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117 | %------------------------------------------------------------------------ |
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118 | SourceDir=get(handles.SourceDir,'String'); |
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119 | [SourcePath,ProjectName]=fileparts(SourceDir); |
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120 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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121 | MirrorDir=get(handles.MirrorDir,'String'); |
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122 | else |
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123 | MirrorRoot=uigetdir('','select the dir which must contain the mirror directory, then press OK'); %file browser |
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124 | if ~ischar(MirrorRoot) |
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125 | return |
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126 | else |
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127 | MirrorDir=fullfile(MirrorRoot,ProjectName); |
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128 | end |
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129 | if ~exist(MirrorDir,'dir') |
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130 | mkdir(MirrorDir) |
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131 | end |
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132 | MirrorDoc.SourceDir=SourceDir; |
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133 | t=struct2xml(MirrorDoc); |
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134 | set(t,1,'name','DataTree'); |
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135 | save(t,fullfile(MirrorDir,[ProjectName '.xml'])) |
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136 | set(handles.MirrorDir,'String',MirrorDir) |
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137 | set(handles.MirrorDir,'Visible','on') |
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138 | end |
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139 | set(handles.SourceDir,'BackgroundColor',[1 1 0]) |
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140 | drawnow |
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141 | ExpName={''}; |
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142 | if exist(SourceDir,'dir') |
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143 | hdir=dir(SourceDir); %list files and dirs |
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144 | idir=0; |
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145 | for ilist=1:length(hdir) |
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146 | if hdir(ilist).isdir |
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147 | dirname=hdir(ilist).name; |
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148 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') |
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149 | idir=idir+1; |
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150 | ExpName{idir}=hdir(ilist).name; |
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151 | |
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152 | mirror=fullfile(MirrorDir,ExpName{idir}); |
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153 | if ~exist(mirror,'dir') |
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154 | mkdir(mirror) |
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155 | end |
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156 | end |
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157 | % look for the list of 'devices' |
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158 | else |
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159 | %warning for isolated files |
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160 | end |
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161 | end |
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162 | set(handles.ListExperiments,'String',[{'*'};ExpName']) |
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163 | set(handles.ListExperiments,'Value',1) |
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164 | ListExperiments_Callback(hObject, eventdata, handles) |
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165 | else |
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166 | msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) |
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167 | end |
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168 | set(handles.SourceDir,'BackgroundColor',[1 1 1]) |
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169 | |
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170 | |
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171 | % %------------------------------------------------------------------------ |
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172 | % function MirrorDir_Callback(hObject, eventdata, handles) |
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173 | % %------------------------------------------------------------------------ |
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174 | % MirrorDir=get(handles.MirrorDir,'String'); |
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175 | % [tild,MirrorName]=fileparts(MirrorDir); |
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176 | % s=xml2struct(fullfile(MirrorDir,[MirrorName '.xml'])); |
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177 | % set(handles.SourceDir,'String',s.SourceDir) |
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178 | % SourceDir_Callback([],[], handles) |
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179 | |
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180 | |
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181 | %------------------------------------------------------------------------ |
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182 | function scan_campaign(handles,Campaign) |
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183 | %------------------------------------------------------------------------ |
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184 | %set(handles.SourceDir,'BackgroundColor',[1 1 0]) |
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185 | drawnow |
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186 | %SourceDir=get(handles.SourceDir,'String'); |
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187 | %MirrorDir=get(handles.MirrorDir,'String'); |
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188 | ExpName={''}; |
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189 | if exist(Campaign,'dir') |
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190 | hdir=dir(Campaign); %list files and dirs |
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191 | idir=0; |
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192 | for ilist=1:length(hdir) |
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193 | if hdir(ilist).isdir |
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194 | dirname=hdir(ilist).name; |
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195 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') |
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196 | idir=idir+1; |
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197 | ExpName{idir}=hdir(ilist).name; |
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198 | end |
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199 | end |
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200 | end |
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201 | set(handles.ListExperiments,'String',[{'*'};ExpName']) |
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202 | set(handles.ListExperiments,'Value',1) |
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203 | ListExperiments_Callback([],[], handles) |
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204 | else |
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205 | msgbox_uvmat('ERROR',['The input ' Campaign ' is not a directory']) |
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206 | end |
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207 | %set(handles.SourceDir,'BackgroundColor',[1 1 1]) |
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208 | |
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209 | |
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210 | %------------------------------------------------------------------------ |
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211 | % --- Executes on selection change in ListExperiments. |
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212 | function ListExperiments_Callback(hObject, eventdata, handles) |
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213 | %------------------------------------------------------------------------ |
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214 | MirrorPath=''; |
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215 | CampaignPath=get(handles.SourceDir,'String'); |
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216 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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217 | % CampaignPath=get(handles.MirrorDir,'String'); |
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218 | MirrorPath=get(handles.MirrorDir,'String'); |
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219 | else |
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220 | % CampaignPath=get(handles.SourceDir,'String'); |
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221 | end |
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222 | % MirrorPath=get(handles.MirrorDir,'String'); |
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223 | ListExperiments=get(handles.ListExperiments,'String'); |
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224 | list_val=get(handles.ListExperiments,'Value'); |
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225 | if isequal(list_val(1),1) |
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226 | ListExperiments=ListExperiments(2:end); %choose all experiments |
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227 | testList=1; |
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228 | set(handles.ListExperiments,'Value',1) |
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229 | else |
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230 | ListExperiments=ListExperiments(list_val);%choose selected experiments |
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231 | testList=0; |
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232 | end |
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233 | scan_experiments(handles,ListExperiments,CampaignPath,MirrorPath) |
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234 | |
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235 | |
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236 | %------------------------------------------------------------------------ |
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237 | % --- Executes on selection change in ListExperiments. |
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238 | function scan_experiments(handles,ListExperiments,CampaignPath,MirrorPath) |
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239 | %------------------------------------------------------------------------ |
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240 | ListDevices={}; |
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241 | for iexp=1:numel(ListExperiments) |
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242 | hdir=dir(fullfile(CampaignPath,ListExperiments{iexp})); %list files and dir in the experiment directory |
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243 | idir=0; |
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244 | for ilist=1:length(hdir) |
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245 | if ~isequal(hdir(ilist).name(1),'.') |
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246 | DataSeries=fullfile(CampaignPath,ListExperiments{iexp},hdir(ilist).name); |
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247 | if ~isempty(MirrorPath) |
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248 | mirror=fullfile(MirrorPath,ListExperiments{iexp},hdir(ilist).name); |
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249 | if ~exist(mirror)% create mirror if needed |
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250 | system(['ln -s ' DataSeries ' ' mirror]) |
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251 | end |
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252 | end |
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253 | check_list=strcmp(hdir(ilist).name,ListDevices); |
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254 | if isempty(find(check_list, 1)) |
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255 | ListDevices=[ListDevices;hdir(ilist).name]; |
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256 | end |
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257 | end |
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258 | end |
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259 | end |
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260 | set(handles.ListDevices,'String',ListDevices) |
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261 | |
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262 | %------------------------------------------------------------------------ |
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263 | % --- Executes on button press in update_headings. |
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264 | function ListDevices_Callback(hObject, eventdata, handles) |
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265 | % CurrentPath=get(handles.SourceDir,'String'); |
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266 | % ListExperiments=get(handles.ListExperiments,'String'); |
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267 | % list_val=get(handles.ListExperiments,'Value'); |
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268 | % if isequal(list_val,1) |
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269 | % ListExperiments=ListExperiments(2:end); |
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270 | % else |
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271 | % ListExperiments=ListExperiments(list_val); |
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272 | % end |
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273 | % set(handles.ListRecords,'Value',1) |
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274 | % set(handles.ListXml,'Value',1) |
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275 | % ListDevices=get(handles.ListDevices,'String'); |
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276 | % list_val=get(handles.ListDevices,'Value'); |
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277 | % if isequal(list_val,1) |
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278 | % ListDevices=ListDevices(2:end); |
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279 | % else |
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280 | % ListDevices=ListDevices(list_val); |
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281 | % end |
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282 | % [ListDevices,ListRecords,ListXml]=ListDir(CurrentPath,ListExperiments,ListDevices,{}); |
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283 | % set(handles.ListRecords,'String',[{'*'};ListRecords']) |
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284 | % set(handles.ListXml,'String',[{'*'};ListXml']) |
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285 | % |
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286 | % |
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287 | % if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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288 | % CurrentPath=get(handles.MirrorDir,'String'); |
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289 | % else |
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290 | % CurrentPath=get(handles.SourceDir,'String'); |
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291 | % end |
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292 | % ListDevices=get(handles.ListDevices,'String'); |
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293 | % Device=ListDevices(get(handles.ListDevices,'Value')); |
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294 | % % else |
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295 | % hdir=dir(fullfile(SourcePath,Device)); %list files and dirs |
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296 | |
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297 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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298 | |
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299 | |
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300 | |
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301 | %------------------------------------------------------------------------ |
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302 | % --- Executes on selection change in ListRecords. |
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303 | function ListRecords_Callback(hObject, eventdata, handles) |
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304 | Value=get(handles.ListRecords,'Value'); |
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305 | if isequal(Value(1),1) |
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306 | set(handles.ListRecords,'Value',1); |
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307 | end |
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308 | |
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309 | %------------------------------------------------------------------------ |
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310 | % --- Executes on button press in CampaignDoc. |
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311 | function CampaignDoc_Callback(hObject, eventdata, handles) |
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312 | %------------------------------------------------------------------------ |
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313 | answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file') |
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314 | if ~isequal(answer{1},'OK') |
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315 | return |
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316 | end |
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317 | set(handles.ListExperiments,'Value',1) |
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318 | ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories |
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319 | DataviewData=get(handles.browse_data,'UserData'); |
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320 | List=DataviewData.List; |
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321 | Currentpath=get(handles.SourceDir,'String'); |
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322 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
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323 | Campaign=[Campaign DirExt]; |
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324 | t=xmltree; |
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325 | t=set(t,1,'name','CampaignDoc'); |
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326 | t = attributes(t,'add',1,'source','directory'); |
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327 | SubCampaignTest=get(handles.SubCampaignTest,'Value'); |
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328 | root_uid=1; |
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329 | if SubCampaignTest |
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330 | %TO DO open an exoiting xml doc |
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331 | [t,root_uid]=add(t,1,'element','SubCampaign'); |
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332 | t =attributes(t,'add',root_uid,'DirName',Campaign); |
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333 | end |
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334 | for iexp=1:length(List.Experiment) |
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335 | set(handles.ListExperiments,'Value',iexp+1) |
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336 | drawnow |
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337 | test_mod=0; |
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338 | [t,uid_exp]=add(t,root_uid,'element','Experiment'); |
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339 | t = attributes(t,'add',uid_exp,'i',num2str(iexp)); |
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340 | ExpName=List.Experiment{iexp}.name; |
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341 | t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name); |
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342 | |
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343 | if isfield(List.Experiment{iexp},'Device') |
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344 | for idevice=1:length(List.Experiment{iexp}.Device) |
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345 | [t,uid_device]=add(t,uid_exp,'element','Device'); |
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346 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
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347 | t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name); |
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348 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
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349 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
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350 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; |
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351 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest); |
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352 | if test |
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353 | [List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated'] |
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354 | end |
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355 | if isequal(Title,'ImaDoc') |
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356 | [t,uid_xml]=add(t,uid_device,'element','ImaDoc'); |
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357 | t = attributes(t,'add',uid_xml,'source','file'); |
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358 | [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}); |
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359 | end |
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360 | end |
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361 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
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362 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
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363 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
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364 | [t,uid_record]=add(t,uid_device,'element','Record'); |
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365 | t = attributes(t,'add',uid_record,'DirName',RecordName); |
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366 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
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367 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
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368 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
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369 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest); |
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370 | if test |
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371 | [FileName ' , Heading updated'] |
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372 | end |
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373 | [t,uid_xml]=add(t,uid_record,'element','ImaDoc'); |
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374 | t = attributes(t,'add',uid_xml,'source','file'); |
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375 | [t]=add(t,uid_xml,'chardata',FileName); |
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376 | end |
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377 | end |
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378 | end |
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379 | end |
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380 | end |
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381 | end |
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382 | end |
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383 | set(handles.ListExperiments,'Value',1) |
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384 | outputdir=get(handles.SourceDir,'String'); |
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385 | [path,dirname]=fileparts(outputdir); |
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386 | outputfile=fullfile(outputdir,[dirname '.xml']); |
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387 | %campaigndoc(t); |
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388 | save(t,outputfile) |
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389 | |
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390 | %------------------------------------------------------------------------ |
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391 | % --- Executes on button press in CampaignDoc. |
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392 | function edit_xml_Callback(hObject, eventdata, handles) |
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393 | %------------------------------------------------------------------------ |
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394 | CurrentPath=get(handles.SourceDir,'String'); |
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395 | %[CurrentPath,Name,Ext]=fileparts(CurrentDir); |
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396 | ListExperiments=get(handles.ListExperiments,'String'); |
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397 | Value=get(handles.ListExperiments,'Value'); |
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398 | if ~isequal(Value,1) |
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399 | ListExperiments=ListExperiments(Value); |
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400 | end |
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401 | ListDevices=get(handles.ListDevices,'String'); |
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402 | Value=get(handles.ListDevices,'Value'); |
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403 | if ~isequal(Value,1) |
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404 | ListDevices=ListDevices(Value); |
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405 | end |
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406 | ListRecords=get(handles.ListRecords,'String'); |
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407 | Value=get(handles.ListRecords,'Value'); |
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408 | if ~isequal(Value,1) |
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409 | ListRecords=ListRecords(Value); |
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410 | end |
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411 | [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); |
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412 | ListXml=get(handles.ListXml,'String'); |
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413 | Value=get(handles.ListXml,'Value'); |
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414 | set(handles.ListXml,'Value',Value(1)); |
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415 | if isequal(Value(1),1) |
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416 | msgbox_uvmat('ERROR','an xml file needs to be selected') |
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417 | return |
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418 | else |
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419 | XmlName=ListXml{Value(1)}; |
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420 | end |
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421 | for iexp=1:length(List.Experiment) |
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422 | ExpName=List.Experiment{iexp}.name; |
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423 | if isfield(List.Experiment{iexp},'Device') |
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424 | for idevice=1:length(List.Experiment{iexp}.Device) |
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425 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
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426 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
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427 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
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428 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} |
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429 | if isequal(FileName,XmlName) |
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430 | editxml(fullfile(CurrentPath,ExpName,DeviceName,FileName)); |
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431 | return |
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432 | end |
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433 | end |
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434 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
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435 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
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436 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
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437 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
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438 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
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439 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
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440 | if isequal(FileName,XmlName) |
---|
441 | editxml(fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName)); |
---|
442 | return |
---|
443 | end |
---|
444 | end |
---|
445 | end |
---|
446 | end |
---|
447 | end |
---|
448 | end |
---|
449 | end |
---|
450 | end |
---|
451 | |
---|
452 | |
---|
453 | |
---|
454 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
455 | % CurrentPath/Campaign: root directory |
---|
456 | function [Title,test_mod]=check_heading(Currentpath,Campaign,Experiment,Device,Record,xmlname,testSubCampaign) |
---|
457 | |
---|
458 | %Shema for Heading: |
---|
459 | % Campaign |
---|
460 | % (SubCampaign) |
---|
461 | % Experiment |
---|
462 | % Device |
---|
463 | % (Record) |
---|
464 | % ImageName |
---|
465 | % DateExp |
---|
466 | % old: %Project: suppressed ( changed to Campaign) |
---|
467 | %Exp: suppressed (changed to experiment) |
---|
468 | %ImaNames: changed to ImageName |
---|
469 | if exist('Record','var') && ~isempty(Record) |
---|
470 | xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,Record,xmlname); |
---|
471 | testrecord=1; |
---|
472 | else |
---|
473 | xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,xmlname); |
---|
474 | testrecord=0; |
---|
475 | end |
---|
476 | if ~exist('testSubCampaign','var') |
---|
477 | testSubCampaign=0; |
---|
478 | end |
---|
479 | if testSubCampaign |
---|
480 | SubCampaign=Campaign; |
---|
481 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
---|
482 | Campaign=[Campaign DirExt]; |
---|
483 | end |
---|
484 | test_mod=0; %test for the modification of the xml file |
---|
485 | t_device=xmltree(xmlfullname); |
---|
486 | Title=get(t_device,1,'name'); |
---|
487 | uid_child=children(t_device,1); |
---|
488 | Heading_old=[]; |
---|
489 | uidheading=0; |
---|
490 | for ilist=1:length(uid_child) |
---|
491 | name=get(t_device,uid_child(ilist),'name'); |
---|
492 | if isequal(name,'Heading') |
---|
493 | uidheading=uid_child(ilist); |
---|
494 | end |
---|
495 | end |
---|
496 | if uidheading |
---|
497 | subt=branch(t_device,uidheading); |
---|
498 | Heading_old=convert(subt); |
---|
499 | else |
---|
500 | return % do not edit xml files without element 'Heading' |
---|
501 | end |
---|
502 | if ~(isfield(Heading_old,'Campaign')&& isequal(Heading_old.Campaign,Campaign)) |
---|
503 | test_mod=1; |
---|
504 | end |
---|
505 | Heading.Campaign=Campaign; |
---|
506 | if testSubCampaign |
---|
507 | if ~(isfield(Heading_old,'SubCampaign')&& isequal(Heading_old.SubCampaign,SubCampaign)) |
---|
508 | test_mod=1; |
---|
509 | end |
---|
510 | Heading.SubCampaign=SubCampaign; |
---|
511 | end |
---|
512 | if ~(isfield(Heading_old,'Experiment')&& isequal(Heading_old.Experiment,Experiment)) |
---|
513 | test_mod=1; |
---|
514 | end |
---|
515 | Heading.Experiment=Experiment; |
---|
516 | if ~(isfield(Heading_old,'Device')&& isequal(Heading_old.Device,Device)) |
---|
517 | test_mod=1; |
---|
518 | end |
---|
519 | Heading.Device=Device; |
---|
520 | if testrecord |
---|
521 | if ~(isfield(Heading_old,'Record')&& isequal(Heading_old.Record,Record)) |
---|
522 | test_mod=1; |
---|
523 | end |
---|
524 | Heading.Record=Record; |
---|
525 | end |
---|
526 | if isfield(Heading_old,'ImaNames') |
---|
527 | test_mod=1; |
---|
528 | if ~isempty(Heading_old.ImaNames) |
---|
529 | Heading.ImageName=Heading_old.ImaNames; |
---|
530 | end |
---|
531 | end |
---|
532 | if isfield(Heading_old,'ImageName')&& ~isempty(Heading_old.ImageName) |
---|
533 | Heading.ImageName=Heading_old.ImageName; |
---|
534 | end |
---|
535 | if isfield(Heading_old,'DateExp')&& ~isempty(Heading_old.DateExp) |
---|
536 | Heading.DateExp=Heading_old.DateExp; |
---|
537 | end |
---|
538 | if test_mod && uidheading |
---|
539 | uid_child=children(t_device,uidheading); |
---|
540 | t_device=delete(t_device,uid_child); |
---|
541 | t_device=struct2xml(Heading,t_device,uidheading); |
---|
542 | backupfile=xmlfullname; |
---|
543 | testexist=2; |
---|
544 | while testexist==2 |
---|
545 | backupfile=[backupfile '~']; |
---|
546 | testexist=exist(backupfile,'file'); |
---|
547 | end |
---|
548 | [success,message]=copyfile(xmlfullname,backupfile);%make backup |
---|
549 | if isequal(success,1) |
---|
550 | delete(xmlfullname) |
---|
551 | else |
---|
552 | return |
---|
553 | end |
---|
554 | save(t_device,xmlfullname) |
---|
555 | end |
---|
556 | |
---|
557 | %------------------------------------------------------------------------ |
---|
558 | % --- Executes on button press in HELP. |
---|
559 | function HELP_Callback(hObject, eventdata, handles) |
---|
560 | path_to_uvmat=which ('uvmat')% check the path of uvmat |
---|
561 | pathelp=fileparts(path_to_uvmat); |
---|
562 | helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); |
---|
563 | if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') |
---|
564 | else |
---|
565 | web([helpfile '#dataview']) |
---|
566 | end |
---|
567 | |
---|
568 | |
---|
569 | |
---|
570 | % --- Executes on selection change in ListXml. |
---|
571 | function ListXml_Callback(hObject, eventdata, handles) |
---|
572 | Value=get(handles.ListXml,'Value'); |
---|
573 | if isequal(Value(1),1) |
---|
574 | set(handles.ListXml,'Value',1); |
---|
575 | end |
---|
576 | |
---|
577 | |
---|
578 | % --- Executes on button press in clean_civ_cmx. |
---|
579 | function clean_civ_cmx_Callback(hObject, eventdata, handles) |
---|
580 | message='this function will delete all files with extensions .log, .bat, .cmx,.cmx2,.errors in the input directory(ies)'; |
---|
581 | answer=msgbox_uvmat('INPUT_Y-N',message); |
---|
582 | if ~isequal(answer,'Yes') |
---|
583 | return |
---|
584 | end |
---|
585 | set(handles.ListExperiments,'Value',1) |
---|
586 | ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories |
---|
587 | DataviewData=get(handles.browse_data,'UserData') |
---|
588 | List=DataviewData.List; |
---|
589 | Currentpath=get(handles.SourceDir,'String'); |
---|
590 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
---|
591 | Campaign=[Campaign DirExt]; |
---|
592 | SubCampaignTest=get(handles.SubCampaignTest,'Value'); |
---|
593 | nbdelete_tot=0; |
---|
594 | for iexp=1:length(List.Experiment) |
---|
595 | set(handles.ListExperiments,'Value',iexp+1) |
---|
596 | drawnow |
---|
597 | test_mod=0; |
---|
598 | ExpName=List.Experiment{iexp}.name; |
---|
599 | nbdelete=0; |
---|
600 | if isfield(List.Experiment{iexp},'Device') |
---|
601 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
602 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
603 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
604 | currentdir=fullfile(Currentpath,Campaign,ExpName,DeviceName); |
---|
605 | hdir=dir(currentdir); %list files and dirs |
---|
606 | idir=0; |
---|
607 | for ilist=1:length(hdir) |
---|
608 | if hdir(ilist).isdir |
---|
609 | dirname=hdir(ilist).name; |
---|
610 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') |
---|
611 | CivDir=fullfile(currentdir,dirname) |
---|
612 | hCivDir=dir(CivDir); |
---|
613 | for ilist=1:length(hCivDir) |
---|
614 | FileName=hCivDir(ilist).name; |
---|
615 | [dd,ff,Ext]=fileparts(FileName); |
---|
616 | if isequal(Ext,'.log')||isequal(Ext,'.bat')||isequal(Ext,'.cmx')||isequal(Ext,'.cmx2')|| isequal(Ext,'.errors') |
---|
617 | delete(fullfile(CivDir,FileName)) |
---|
618 | nbdelete=nbdelete+1; |
---|
619 | end |
---|
620 | end |
---|
621 | end |
---|
622 | end |
---|
623 | end |
---|
624 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
625 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
626 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
627 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
628 | 'look at subdirectories' |
---|
629 | end |
---|
630 | end |
---|
631 | end |
---|
632 | end |
---|
633 | end |
---|
634 | display([num2str(nbdelete) ' files deleted']) |
---|
635 | nbdelete_tot=nbdelete_tot+nbdelete; |
---|
636 | end |
---|
637 | msgbox_uvmat('CONFIRMATION',['END: ' num2str(nbdelete_tot) ' files deleted by clean_civ_cmx']) |
---|
638 | set(handles.ListExperiments,'Value',1) |
---|
639 | |
---|
640 | |
---|
641 | % --- Executes on button press in OK. |
---|
642 | function OK_Callback(hObject, eventdata, handles) |
---|
643 | %------------------------------------------------------------------------ |
---|
644 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
---|
645 | Campaign=get(handles.MirrorDir,'String'); |
---|
646 | else |
---|
647 | Campaign=get(handles.SourceDir,'String'); |
---|
648 | end |
---|
649 | handles.output.Campaign=Campaign; |
---|
650 | Experiment=get(handles.ListExperiments,'String'); |
---|
651 | IndicesExp=get(handles.ListExperiments,'Value'); |
---|
652 | if ~isequal(IndicesExp,1)% if first element ('*') selected all the experiments are selected |
---|
653 | Experiment=Experiment(IndicesExp);% use the selection of the list of experiments |
---|
654 | end |
---|
655 | Device=get(handles.ListDevices,'String'); |
---|
656 | Value=get(handles.ListDevices,'Value'); |
---|
657 | Device=Device(Value); |
---|
658 | handles.output.Experiment=Experiment; |
---|
659 | handles.output.Device=Device; |
---|
660 | guidata(hObject, handles);% Update handles structure |
---|
661 | uiresume(handles.browse_data); |
---|
662 | drawnow |
---|
663 | return |
---|
664 | |
---|
665 | |
---|
666 | % ListRecords=get(handles.ListRecords,'String'); |
---|
667 | % Value=get(handles.ListRecords,'Value'); |
---|
668 | % if ~isequal(Value,1) |
---|
669 | % ListRecords=ListRecords(Value); |
---|
670 | % end |
---|
671 | |
---|
672 | %[ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices); |
---|
673 | ListXml=get(handles.ListXml,'String'); |
---|
674 | Value=get(handles.ListXml,'Value'); |
---|
675 | if isequal(Value,1) |
---|
676 | msgbox_uvmat('ERROR','you need to select in the GUI browse_data the xml files to edit') |
---|
677 | return |
---|
678 | else |
---|
679 | ListXml=ListXml(Value); |
---|
680 | end |
---|
681 | |
---|
682 | %update all the selected xml files |
---|
683 | DataviewData=get(handles.browse_data,'UserData'); |
---|
684 | % answer=msgbox_uvmat('INPUT_Y-N',[num2str(length(Value)) ' xml files for device ' ListDevices{1} ' will be refreshed with ' ... |
---|
685 | % DataviewData.GeometryCalib.CalibrationType ' calibration data']) |
---|
686 | % if ~isequal(answer,'Yes') |
---|
687 | % return |
---|
688 | % end |
---|
689 | %List.Experiment{1}.Device{1} |
---|
690 | %List.Experiment{2}.Device{1} |
---|
691 | for iexp=1:length(List.Experiment) |
---|
692 | ExpName=List.Experiment{iexp}.name; |
---|
693 | set(handles.ListExperiments,'Value',IndicesExp(iexp)); |
---|
694 | if isfield(List.Experiment{iexp},'Device') |
---|
695 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
696 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
697 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
698 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
---|
699 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; |
---|
700 | for ilistxml=1:length(ListXml) |
---|
701 | if isequal(FileName,ListXml{ilistxml}) |
---|
702 | set(handles.ListXml,'Value',Value(ilistxml)) |
---|
703 | drawnow |
---|
704 | xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,FileName); |
---|
705 | update_imadoc(DataviewData.GeometryCalib,xmlfullname) |
---|
706 | display([xmlfullname ' updated']) |
---|
707 | break |
---|
708 | end |
---|
709 | end |
---|
710 | end |
---|
711 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
712 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
713 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
714 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
715 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
---|
716 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
---|
717 | for ilistxml=1:length(ListXml) |
---|
718 | if isequal(FileName,ListXml{ilistxml}) |
---|
719 | set(handles.ListXml,'Value',Value(ilistxml)) |
---|
720 | drawnow |
---|
721 | xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName); |
---|
722 | update_imadoc(DataviewData.GeometryCalib,xmlfullname) |
---|
723 | display([xmlfullname ' updated']) |
---|
724 | break |
---|
725 | end |
---|
726 | end |
---|
727 | end |
---|
728 | end |
---|
729 | end |
---|
730 | end |
---|
731 | end |
---|
732 | end |
---|
733 | end |
---|
734 | set(handles.ListXml,'Value',Value) |
---|
735 | % |
---|
736 | % |
---|
737 | % |
---|
738 | % |
---|
739 | % |
---|
740 | % |
---|
741 | % |
---|
742 | % CurrentPath=get(handles.SourceDir,'String');%= get(hObject,'String'); |
---|
743 | % ListExperiments=get(handles.ListExperiments,'String'); |
---|
744 | % Value=get(handles.ListExperiments,'Value'); |
---|
745 | % if ~isequal(Value,1) |
---|
746 | % ListExperiments=ListExperiments(Value); |
---|
747 | % end |
---|
748 | % ListDevices=get(handles.ListDevices,'String'); |
---|
749 | % Value=get(handles.ListDevices,'Value'); |
---|
750 | % if isequal(Value,1) |
---|
751 | % msgbox_uvmat('ERROR','manually select in the GUI browse_data the device being calibrated') |
---|
752 | % return |
---|
753 | % else |
---|
754 | % ListDevices=ListDevices(Value); |
---|
755 | % end |
---|
756 | % ListRecords=get(handles.ListRecords,'String'); |
---|
757 | % Value=get(handles.ListRecords,'Value'); |
---|
758 | % if ~isequal(Value,1) |
---|
759 | % ListRecords=ListRecords(Value); |
---|
760 | % end |
---|
761 | % [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); |
---|
762 | % ListXml=get(handles.ListXml,'String'); |
---|
763 | % Value=get(handles.ListXml,'Value'); |
---|
764 | % if isequal(Value,1) |
---|
765 | % msgbox_uvmat('ERROR','you need to select in the GUI browse_data the xml files to edit') |
---|
766 | % return |
---|
767 | % else |
---|
768 | % ListXml=ListXml(Value); |
---|
769 | % end |
---|
770 | % handles.output.CurrentPath=CurrentPath; |
---|
771 | % handles.output.ListExperiments=ListExperiments; |
---|
772 | % handles.output.ListDevices=ListDevices; |
---|
773 | % handles.output.ListRecords=ListRecords; |
---|
774 | % handles.output.ListXml=ListXml; |
---|
775 | % handles.output.List=List; |
---|
776 | % handles.output ='OK, Calibration replicated'; |
---|
777 | % guidata(hObject, handles);% Update handles structure |
---|
778 | % uiresume(handles.browse_data); |
---|
779 | |
---|
780 | % --- Executes on button press in Cancel. |
---|
781 | function Cancel_Callback(hObject, eventdata, handles) |
---|
782 | handles.output = get(hObject,'String'); |
---|
783 | guidata(hObject, handles); % Update handles structure |
---|
784 | % Use UIRESUME instead of delete because the OutputFcn needs |
---|
785 | uiresume(handles.browse_data); |
---|
786 | |
---|
787 | % --- Executes when user attempts to close browse_data. |
---|
788 | function browse_data_CloseRequestFcn(hObject, eventdata, handles) |
---|
789 | if isequal(get(handles.browse_data, 'waitstatus'), 'waiting') |
---|
790 | % The GUI is still in UIWAIT, us UIRESUME |
---|
791 | uiresume(handles.browse_data); |
---|
792 | else |
---|
793 | % The GUI is no longer waiting, just close it |
---|
794 | delete(handles.browse_data); |
---|
795 | end |
---|
796 | |
---|
797 | % --- Executes on key press over figure1 with no controls selected. |
---|
798 | function browse_data_KeyPressFcn(hObject, eventdata, handles) |
---|
799 | % Check for "enter" or "escape" |
---|
800 | if isequal(get(hObject,'CurrentKey'),'escape') |
---|
801 | % User said no by hitting escape |
---|
802 | handles.output = 'Cancel'; |
---|
803 | |
---|
804 | % Update handles structure |
---|
805 | guidata(hObject, handles); |
---|
806 | |
---|
807 | uiresume(handles.browse_data); |
---|
808 | end |
---|
809 | if isequal(get(hObject,'CurrentKey'),'return') |
---|
810 | uiresume(handles.browse_data); |
---|
811 | end |
---|