source: trunk/src/check_files.m @ 1037

Last change on this file since 1037 was 1033, checked in by sommeria, 6 years ago

miscellaneous updates

File size: 11.7 KB
1%'check_files': check the path, modification date and svn version for all the
2%  function in the toolbox UVMAT. Called at the opening of uvmat. Adds the
3%  uvmat path to the Matlab path if needed.
5% function [checkmsg,date_str,ver]=check_files
8% checkmsg: error message listing functions whose paths are not in the directory of uvmat.m
9% date_str: date of the most recent modification of a file in the toolbox
10% ver : svn version in case this is a  svn repository
13% Copyright 2008-2018, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France
15%   Joel.Sommeria - Joel.Sommeria (A)
17%     This file is part of the toolbox UVMAT.
19%     UVMAT is free software; you can redistribute it and/or modify
20%     it under the terms of the GNU General Public License as published
21%     by the Free Software Foundation; either version 2 of the license,
22%     or (at your option) any later version.
24%     UVMAT is distributed in the hope that it will be useful,
25%     but WITHOUT ANY WARRANTY; without even the implied warranty of
27%     GNU General Public License (see LICENSE.txt) for more details.
30function [checkmsg,date_str,svn_info]=check_files
36    'activate';...% emulate the mouse selection of a GUI element, for demo
37    'browse_data';...% function for scanning directories in a project/campaign
38    'browse_data.fig';...% GUI corresponding to dataview
39    'calc_field_interp';...% defines fields (velocity, vort, div...) from civx data and calculate them
40    'calc_field_tps';...% defines fields (velocity, vort, div...) and calculate them
41    'cell2tab';... %transform a Matlab cell in a character array suitable for display in a table
42    'check_files';...
43    'civ';...   %function associated with the interface 'civ.fig' for PIV and spline interpolation (to be replaced by civ_series)
44    'civ.fig';...
45    'civ_3D';... % function associated with the interface 'civ_3D.fig' for PIV in volume (TODO: combine with civ.m)
46    'civ_3D.fig';...
47    'compile';...% compile a Matlab function, create a binary in a subdirectory /bin
48    'copyfields';...% copy fields between two matlab structures
49    'create_grid';...% called by the GUI geometry_calib to create a physical grid
50    'create_grid.fig';...% GUI corresponding to create_grid.m
51    'disp_uvmat';...% display a message using  msgbox_uvmat or on the log file in batch mode
52    'editxml';...% display and edit xml files using a xls schema
53    'editxml.fig';...% interface for editxml
54    'fileparts_uvmat';...% extracts the root name,field indexes and nomenclature type from an input filename
55    'fill_GUI';...%  fill a GUI with a set of parameters from a Matlab structure
56    'filter_tps';...% find the thin plate spline coefficients for interpolation-smoothing
57    'find_field_bounds';... % find the boounds and typical meshs of coordinates
58    'find_field_cells';...% group the variables of a 'field object' into 'field cells' and specify their structure
59    'find_file_series';...% check the content of an input file and find the corresponding file series
60    'find_imadoc';...% find the ImaDoc xml file associated with a given input file
61    'fullfile_uvmat';...% creates a file name from a root name and indices.
62    'geometry_calib';...% performs geometric calibration from a set of reference points
63    'geometry_calib.fig';...% interface for geometry_calib
64    'get_field';...% choose and plot a field from a Netcdf file
65    'get_field.fig';...%interface for get_field
66    'get_file_info';...% determine info about a file (image, multimage, civdata,...) .
67    'get_file_series';...% determine the list of file names and file indices for functions called by 'series'.
68    'hist_update';...%  update of a current global histogram by inclusion of a new field
69    'imadoc2struct';...%convert the image documentation file ImaDoc into a Matlab structure
70    'interp2_uvmat';...% linearly interpolate an image or scalar defined on a regular grid
71    'keyboard_callback';... % function activated when a key is pressed on the keyboard
72    'ListDir';... % scan the structure of the directory tree (for editxml.m)
73    'mask_proj';...% restrict input fields to a mask region, set to 0 outside
74    'mouse_down';% function activated when the mouse button is pressed on a figure (callback for 'WindowButtonDownFcn')
75    'mouse_motion';...% permanently called by mouse motion over a figure (callback for 'WindowButtonMotionFcn')
76    'mouse_up';... % function to be activated when the mouse button is released (callback for 'WindowButtonUpFcn')
77    'msgbox_uvmat';... % associated with GUI msgbox_uvmat.fig to display message boxes, for error, warning or input calls
78    'msgbox_uvmat.fig';...
79    'nomtype2pair';... creates nomenclature for index pairs knowing the image nomenclature, used by series fct
80    'nc2struct';...% transform a netcdf file in a corresponding matlab structure
81    'num2stra';...% transform number to the corresponding character string depending on the nomenclature
82    'phys_XYZ';...% transform coordiantes from pixels to phys
83    'px_XYZ';...% transform coordiantes from phys to pixels
84    'plot_field';...%displays a vector field and/or scalar or images
85    'plot_object';...%draws a projection object (points, line, plane...)
86    'proj_field';...%project a field on a projection object (plane, line,...)
87    'read_civxdata';...reads civx data from netcdf files
88    'read_civdata';... reads new civ data from netcdf files
89    'read_field';...% read the fields from files in different formats (netcdf files, images, video)
90    'read_GUI';... %read a GUI and provide the data as a Matlab structure
91    'read_image';...%read images or video objects
92    'read_multimadoc';... %read a set of Imadoc files and compare their timing of different file series
93    'read_xls';...%read excel files containing the list of the experiments
94    'reinit';...% suppress the personal parameter file 'uvmat_perso.mat'
95    'rotate_points';...%'rotate_points': associated with GUI rotate_points.fig to introduce (2D) rotation parameters
96    'rotate_points.fig';...
97    'series';...% master function for analysis field series, with interface 'series.fig'
98    'series.fig';...% interface for 'series'
99    'set_col_vec';...% sets the color code for vectors depending on a scalar and input parameters (used for plot_field)
100    'set_field_list';...% set the menu of input fields
101    'set_grid';...% creates a grid for PIV
102    'set_grid.fig';...% interface for set_grid
103    'set_object.m';...%  edit a projection object
104    'set_object.fig';...% interface for set_object
105    'set_subdomains';...% sort a set of points defined by scattered coordinates in subdomains, as needed for tps interpolation
106    'stra2num';...% transform letters (a, b, A, B,) or numerical strings ('1','2'..) to the corresponding numbers
107    'sub_field';...% combine the two input fields,
108    'struct2nc';...% %write fields in netcdf files
109    'struct2xml';... transform a matlab structure to a xml tree.
110    'tps_coeff';...% calculate the thin plate spline (tps) coefficients
111    'tps_coeff_field';...% calculate the thin plate spline (tps) coefficients with subdomains for a field structure
112    'tps_eval';... %calculate the thin plate spline (tps) interpolation at a set of points
113    'tps_eval_dxy';...% calculate the derivatives of thin plate spline (tps) interpolation at a set of points (limited to the 2D case)
114    'translate_points';...% associated with GUI translate_points.fig to display translation parameters
115    'translate_points.fig';...
116    'uigetfile_uvmat';... browser, and display of directories, faster than the Matlab fct uigetfile
117    'update_imadoc';...  %update the ImaDoc xml file
118    'update_waitbar';... update the waitbar display, used for ACTION functions in the GUI 'series'
119    'uvmat';...% master function for file scanning and visualisation of 2D fields
120    'uvmat.fig';...  %interface for uvmat
121    'view_field.m';...% function for visualisation of projected fields'
122    'view_field.fig';...%GUI for view_field
123    'xml2struct';...% read an xml file as a Matlab structure, converts numeric character strings into numbers
124    };
125dir_fct=which('uvmat');% path to uvmat
128%% add the uvmat path to matlab if needed
129if isempty(regexp(path,[pathuvmat '(:|\>)'],'once'))
130    addpath(pathuvmat);
134%% loop on the list of functions in the uvmat package
136if ~exist(fullfile(pathuvmat,'@xmltree'),'dir')
137    icount=icount+1;
138    checkmsg{icount}='ERROR installation: toolbox xmltree missing';
141for i=1:length(list_fct)
142    dir_fct=which(list_fct{i});% path to fct
143    if isempty(dir_fct)
144        icount=icount+1;
145        checkmsg{icount}=[list_fct{i} ' not found'];% test for function not found
146    else
147        pth=fileparts(dir_fct);
148        if ~isequal(pathuvmat,pth) && ~isequal(fullfile(pathuvmat,'private'),pth)
149            icount=icount+1;
150            checkmsg{icount}=[dir_fct ' overrides the package UVMAT'];% bad path for the function
151        end
152        datfile=dir(dir_fct);
153        if isfield(datfile,'datenum')
154            datnum(i)= datfile.datenum;
155        end
156    end
160%% check svn status
161[status,result]=system('svn --help');
162if status==0 % if a svn line command is available
163    svn_info.rep_rev=0;svn_info.cur_rev=0;
164    [tild,result]=system(['svn info ' dir_fct]); %get info fromn the svn server
165    t=regexp(result,'\s*:\s*(?<rev>\d+)','names');%detect 'revision' or 'Revision' in the text
166    if ~isempty(t)
167        svn_info.cur_rev=str2double(t.rev); %version nbre of the current package
168    end
169    [tild,result]=system(['svn info -r ''HEAD'' '  pathuvmat]);
170    t=regexp(result,'\s*:\s*(?<rev>\d+)','names');
171    if ~isempty(t)
172        svn_info.rep_rev=str2double(t.rev); % version nbre available on the svn repository
173    end
174    [tild,result]=system(['svn status '  pathuvmat]);% '&' prevents the program to stop when the system asks password
175    svn_info.status=result;
176    checkmsg =[checkmsg {['SVN revision : ' num2str(svn_info.cur_rev)]}];%display version nbre of the current uvmat package
177    if svn_info.rep_rev>svn_info.cur_rev %if the repository has a more advanced version than the uvmat package, warning msge
178        checkmsg =[checkmsg ...
179            {['Repository now at revision ' num2str(svn_info.rep_rev) '. Please type svn update in uvmat folder']}];
180    end
181    modifications=regexp(svn_info.status,'M\s[^(\n|\>)]+','match');% detect the files modified compared to the repository
182    if ~isempty(modifications)
183        for ilist=1:numel(modifications)
184            [tild,FileName,FileExt]=fileparts(modifications{ilist});
185            checkmsg=[checkmsg {[FileName FileExt ' modified']}];
186        end
187    end
188else % no svn line command available
189    checkmsg=[checkmsg {'SVN not available'}];
193%% check dates of compilation
194% currentdir=pwd;
195% cd(pathuvmat)
196% list_compile=dir('*.sh');
197% for ilist=1:numel(list_compile)
198%     mfile=regexprep(list_compile(ilist).name,'.sh$','.m');
199%     if exist(mfile,'file')
200%         datfile=dir(mfile);
201%         if ~isempty(datfile) && isfield(datfile,'datenum') && datfile.datenum>list_compile(ilist).datenum
202%             checkmsg=[checkmsg;{[list_compile(ilist).name ' needs to be updated by compile_functions']}];
203%         end
204%     end
205% end
206% cd(currentdir)
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