source: trunk/src/check_files.m @ 429

Last change on this file since 429 was 380, checked in by sommeria, 12 years ago

reading of civ data, new format, improved: bugs for reading u and v repairedd

File size: 9.9 KB
1%'check_files': check the path, modification date and svn version for all the
2%  function in the toolbox UVMAT. Called at the opening of uvmat. Adds the
3%  uvmat path to the Matlab path if needed.
5% function [errormsg,date_str,ver]=check_files
8% errormsg: error message listing functions whose paths are not in the directory of uvmat.m
9% date_str: date of the most recent modification of a file in the toolbox
10% ver : svn version in case this is a  svn repository
13%  Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG,
15%     This file is part of the toolbox UVMAT.
17%     UVMAT is free software; you can redistribute it and/or modify
18%     it under the terms of the GNU General Public License as published by
19%     the Free Software Foundation; either version 2 of the License, or
20%     (at your option) any later version.
22%     UVMAT is distributed in the hope that it will be useful,
23%     but WITHOUT ANY WARRANTY; without even the implied warranty of
25%     GNU General Public License (file UVMAT/COPYING.txt) for more details.
28function [errormsg,date_str,svn_info]=check_files
35    'calc_field';...% defines fields (velocity, vort, div...) from civx data and calculate them
36    'cell2tab';... %transform a Matlab cell in a character array suitable for display in a table
37    'check_field_structure';...% check the validity of the field struture representation consistant with the netcdf format
38    'check_files';...
39    'civ';...   %function associated with the interface 'civ.fig' for PIV and spline interpolation
40    'civ.fig';...
41    'civ_3D';... function associated with the interface 'civ_3D.fig' for PIV in volume (TODO: combine with civ.m)
42    'civ_3D.fig';...
43    'civ_matlab';...% civ programs, Matlab version (called by civ.m, option Civprogram/Matlab in the upper menu bar)
44    'close_fig';...% function  activated when a figure is closed
45    'copyfields';...% copy fields between two matlab structures
46    'create_grid';...% called by the GUI geometry_calib to create a physical grid
47    'create_grid.fig';...% GUI corresponding to create_grid.m
48    'dataview';...% function for scanning directories in a campaign
49    'dataview.fig';...% GUI corresponding to dataview
50    'delete_object';...%delete a projection object, defined by its index in the Uvmat list or by its graphic handle
51    'editxml';...%display and edit xml files using a xls schema
52    'editxml.fig';...%interface for editxml
53    'fileparts_uvmat';...% extracts the root name,field indexes and nomenclature type from an input filename
54    'fill_GUI';...% fill a GUI with handles 'handles' from input data Param
55    'find_field_indices';...% group the variables of a nc-formated Matlab structure into 'fields' with common dimensions
56    'find_file_series';...%check the content of an input file and find the corresponding file series
57    'fullfile_uvmat';...%creates a file name from a root name and indices.
58    'geometry_calib';...%performs geometric calibration from a set of reference points
59    'geometry_calib.fig';...%interface for geometry_calib
60    'get_field';...% choose and plot a field from a Netcdf file
61    'get_field.fig';...%interface for get_field
62    'get_file_series';...% determine the list of file names and file indices for functions called by 'series'.
63    'get_file_type';...% determine info about a file (image, multimage, civdata,...) .
64    'griddata_uvmat';...%make 2D linear interpolation using griddata, with input appropriate for both Matlab 6.5 and 7
65    'hist_update';...%  update of a current global histogram by inclusion of a new field
66    'imadoc2struct';...%convert the image documentation file ImaDoc into a Matlab structure
67    'keyboard_callback';... % function activated when a key is pressed on the keyboard
68    'ListDir';... scan the structure of the directory tree (for dataview.m)
69    'mouse_down';% function activated when the mouse button is pressed on a figure (callback for 'WindowButtonDownFcn')
70    'mouse_motion';...% permanently called by mouse motion over a figure (callback for 'WindowButtonMotionFcn')
71    'mouse_up';... % function to be activated when the mouse button is released (callback for 'WindowButtonUpFcn')
72    'msgbox_uvmat';... associated with GUI msgbox_uvmat.fig to display message boxes, for error, warning or input calls
73    'msgbox_uvmat.fig';...
74    'nc2struct';...% transform a netcdf file in a corresponding matlab structure
75    'num2stra';...% transform number to the corresponding character string depending on the nomenclature
76    'open_uvmat';...% open with uvmat the  field selected in the list of 'civ/status' or 'series/check_data_files'
77    'peaklock';...%
78    'phys_XYZ';...% transform coordiantes from pixels to phys
79    'px_XYZ';...% transform coordiantes from phys to pixels
80    'plot_field';...%displays a vector field and/or scalar or images
81    'plot_object';...%draws a projection object (points, line, plane...)
82    'proj_field';...%project a field on a projection object (plane, line,...)
83    'read_civxdata';...reads civx data from netcdf files
84    'read_civdata';... reads new civ data from netcdf files
85    'read_get_field';... read the list of selected variables from the GUI get_field (TODO: use read_GUI)
86    'read_GUI';... %read all parameters set by a GUI as a Matlab structure
87    'read_imatext';...%read .civ files (obsolete, but can be adapted to other text documentation files)
88    'read_xls';...%read excel files containing the list of the experiments
89    'reinit';...% suppress the personal parameter file 'uvmat_perso.mat'
90    'rotate_points';...%'rotate_points': associated with GUI rotate_points.fig to introduce (2D) rotation parameters
91    'rotate_points.fig';...
92    'RUN_STLIN';...% combine 2 displacement fields for stereo PIV
93    'series';...% master function for analysis field series, with interface 'series.fig'
94    'series.fig';...% interface for 'series'
95    'set_col_vec';...% sets the color code for vectors depending on a scalar and input parameters (used for plot_field)
96    'set_grid';...% creates a grid for PIV
97    'set_grid.fig';...% interface for set_grid
98    'set_object.m';...%  edit a projection object
99    'set_object.fig';...% interface for set_object
100    'stra2num';...% transform letters (a, b, A, B,) or numerical strings ('1','2'..) to the corresponding numbers
101    'sub_field';...% combine the two input fields,
102    'struct2nc';...% %write fields in netcdf files
103    'struct2xml';... transform a matlab structure to a xml tree.
104    'tps_coeff';...% calculate the thin plate spline (tps) coefficients
105    'tps_eval';... %calculate the thin plate spline (tps) interpolation at a set of points
106    'tps_eval_dxy';...% calculate the derivatives of thin plate spline (tps) interpolation at a set of points (limited to the 2D case)
107    'translate_points';...% associated with GUI translate_points.fig to display translation parameters
108    'translate_points.fig';...
109    'update_imadoc';...  %update the ImaDoc xml file
110    'update_obj';... update the object representation graph and its projection field, record it in the uvmat interface
111    'update_waitbar';... update the waitbar display, used for ACTION functions in the GUI 'series'
112    'uvmat';...% master function for file scanning and visualisation of 2D fields
113    'uvmat.fig';...  %interface for uvmat
114    'view_field.m';...% function for visualisation of projected fields'
115    'view_field.fig';...%GUI for view_field
116    'write_plot_param';...%update plotting parameters after plot, TODO: change into a general function: fill_GUI
117    'xml2struct';...% read an xml file as a Matlab structure, converts numeric character strings into numbers
118    };
119dir_fct=which('uvmat');% path to uvmat
122%% add the uvmat path to matlab if needed
123if isempty(regexp(path,[pathuvmat '(:|\>)'],'once'))
124    addpath(pathuvmat);
128%% loop on the list of functions in the uvmat package
132for i=1:length(list_fct)
133    dir_fct=which(list_fct{i});% path to fct
134    if isempty(dir_fct)
135        icount=icount+1;
136        errormsg{icount}=[list_fct{i} ' not found'];% test for function not found
137    else
138        [pth,name,ext]=fileparts(dir_fct);
139        if ~isequal(pathuvmat,pth)&~isequal(fullfile(pathuvmat,'private'),pth)
140            icount=icount+1;
141            errormsg{icount}=[dir_fct ' overrides the package UVMAT'];% bad path for the function
142        end
143        datfile=dir(dir_fct);
144        if isfield(datfile,'datenum')
145            datnum(i)= datfile.datenum;
146        end
147    end
150[status,result]=system('svn --help');
151if status==0
152    [tild,result]=system(['svn info ' dir_fct]);
153    t=regexp(result,'\s*:\s*(?<rev>\d+)','names');
154    svn_info.cur_rev=str2double(t.rev);
155    [tild,result]=system(['svn info -r ''HEAD'' '  dir_fct]);
156    t=regexp(result,'\s*:\s*(?<rev>\d+)','names');
157    svn_info.rep_rev=str2double(t.rev);
158    [tild,result]=system(['svn status'  dir_fct]);
159    svn_info.status=result;
160    if svn_info.rep_rev>svn_info.cur_rev
161        errormsg {length(errormsg)+1}=['Repository now at revision ' num2str(svn_info.rep_rev) '. Please type svn update in uvmat folder'];
162    end
163    modifications=regexp(svn_info.status,'M\s[^(\n|\>)]+','match');
164    if ~isempty(modifications)
165        for k=1:length(modifications)
166            errormsg {length(errormsg)+1}=modifications{k};
167        end
168    end
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