source: trunk/src/check_files.m @ 646

Last change on this file since 646 was 646, checked in by sommeria, 11 years ago

various update, bugs to be expected

File size: 11.5 KB
1%'check_files': check the path, modification date and svn version for all the
2%  function in the toolbox UVMAT. Called at the opening of uvmat. Adds the
3%  uvmat path to the Matlab path if needed.
5% function [checkmsg,date_str,ver]=check_files
8% checkmsg: error message listing functions whose paths are not in the directory of uvmat.m
9% date_str: date of the most recent modification of a file in the toolbox
10% ver : svn version in case this is a  svn repository
13%  Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG,
15%     This file is part of the toolbox UVMAT.
17%     UVMAT is free software; you can redistribute it and/or modify
18%     it under the terms of the GNU General Public License as published by
19%     the Free Software Foundation; either version 2 of the License, or
20%     (at your option) any later version.
22%     UVMAT is distributed in the hope that it will be useful,
23%     but WITHOUT ANY WARRANTY; without even the implied warranty of
25%     GNU General Public License (file UVMAT/COPYING.txt) for more details.
28function [checkmsg,date_str,svn_info]=check_files
34    'activate';...% emulate the mouse selection of a GUI element, for demo
35    'browse_data';...% function for scanning directories in a project/campaign
36    'browse_data.fig';...% GUI corresponding to dataview
37    'calc_field_interp';...% defines fields (velocity, vort, div...) from civx data and calculate them
38    'calc_field_tps';...% defines fields (velocity, vort, div...) and calculate them
39    'cell2tab';... %transform a Matlab cell in a character array suitable for display in a table
40    'check_files';...
41    'civ';...   %function associated with the interface 'civ.fig' for PIV and spline interpolation (to be replaced by civ_series)
42    'civ.fig';...
43    'civ_3D';... % function associated with the interface 'civ_3D.fig' for PIV in volume (TODO: combine with civ.m)
44    'civ_3D.fig';...
45    'civ_matlab';...% civ programs, Matlab version (called by civ.m, option Civprogram/Matlab in the upper menu bar)
46    'compile';...% compile a Matlab function, create a binary in a subdirectory /bin
47    'copyfields';...% copy fields between two matlab structures
48    'create_grid';...% called by the GUI geometry_calib to create a physical grid
49    'create_grid.fig';...% GUI corresponding to create_grid.m
50    'displ_uvmat';...% display a message using  msgbox_uvmat or on the log file in batch mode
51    'editxml';...% display and edit xml files using a xls schema
52    'editxml.fig';...% interface for editxml
53    'fileparts_uvmat';...% extracts the root name,field indexes and nomenclature type from an input filename
54    'fill_GUI';...%  fill a GUI with a set of parameters from a Matlab structure
55    'filter_tps';...% find the thin plate spline coefficients for interpolation-smoothing
56    'find_field_cells';...% group the variables of a 'field object' into 'field cells' and specify their structure
57    'find_file_series';...% check the content of an input file and find the corresponding file series
58    'find_imadoc';...% find the ImaDoc xml file associated with a given input file
59    'fullfile_uvmat';...% creates a file name from a root name and indices.
60    'geometry_calib';...% performs geometric calibration from a set of reference points
61    'geometry_calib.fig';...% interface for geometry_calib
62    'get_field';...% choose and plot a field from a Netcdf file
63    'get_field.fig';...%interface for get_field
64    'get_file_series';...% determine the list of file names and file indices for functions called by 'series'.
65    'get_file_type';...% determine info about a file (image, multimage, civdata,...) .
66    'hist_update';...%  update of a current global histogram by inclusion of a new field
67    'imadoc2struct';...%convert the image documentation file ImaDoc into a Matlab structure
68    'interp2_uvmat';...% linearly interpolate an image or scalar defined on a regular grid
69    'keyboard_callback';... % function activated when a key is pressed on the keyboard
70    'ListDir';... % scan the structure of the directory tree (for editxml.m)
71    'mask_proj';...% restrict input fields to a mask region, set to 0 outside
72    'mouse_down';% function activated when the mouse button is pressed on a figure (callback for 'WindowButtonDownFcn')
73    'mouse_motion';...% permanently called by mouse motion over a figure (callback for 'WindowButtonMotionFcn')
74    'mouse_up';... % function to be activated when the mouse button is released (callback for 'WindowButtonUpFcn')
75    'msgbox_uvmat';... % associated with GUI msgbox_uvmat.fig to display message boxes, for error, warning or input calls
76    'msgbox_uvmat.fig';...
77    'nomtype2pair';... creates nomenclature for index pairs knowing the image nomenclature, used by series fct
78    'nc2struct';...% transform a netcdf file in a corresponding matlab structure
79    'num2stra';...% transform number to the corresponding character string depending on the nomenclature
80    'open_uvmat';...% open with uvmat the  field selected in the list of 'civ/status' or 'series/check_data_files'
81    'phys_XYZ';...% transform coordiantes from pixels to phys
82    'px_XYZ';...% transform coordiantes from phys to pixels
83    'plot_field';...%displays a vector field and/or scalar or images
84    'plot_object';...%draws a projection object (points, line, plane...)
85    'proj_field';...%project a field on a projection object (plane, line,...)
86    'read_civxdata';...reads civx data from netcdf files
87    'read_civdata';... reads new civ data from netcdf files
88    'read_field';...% read the fields from files in different formats (netcdf files, images, video)
89    'read_geometry_calib';... read data on the GUI geometry_calib
90    'read_GUI';... %read a GUI and provide the data as a Matlab structure
91    'read_image';...%read images or video objects
92    'read_multimadoc';... %read a set of Imadoc files and compare their timing of different file series
93    'read_xls';...%read excel files containing the list of the experiments
94    'reinit';...% suppress the personal parameter file 'uvmat_perso.mat'
95    'rotate_points';...%'rotate_points': associated with GUI rotate_points.fig to introduce (2D) rotation parameters
96    'rotate_points.fig';...
97    'RUN_STLIN';...% combine 2 displacement fields for stereo PIV
98    'series';...% master function for analysis field series, with interface 'series.fig'
99    'series.fig';...% interface for 'series'
100    'set_col_vec';...% sets the color code for vectors depending on a scalar and input parameters (used for plot_field)
101    'set_field_list';...% set the menu of input fields
102    'set_grid';...% creates a grid for PIV
103    'set_grid.fig';...% interface for set_grid
104    'set_object.m';...%  edit a projection object
105    'set_object.fig';...% interface for set_object
106    'set_subdomains';...% sort a set of points defined by scattered coordinates in subdomains, as needed for tps interpolation
107    'stra2num';...% transform letters (a, b, A, B,) or numerical strings ('1','2'..) to the corresponding numbers
108    'sub_field';...% combine the two input fields,
109    'struct2nc';...% %write fields in netcdf files
110    'struct2xml';... transform a matlab structure to a xml tree.
111    'tps_coeff';...% calculate the thin plate spline (tps) coefficients
112    'tps_coeff_field';...% calculate the thin plate spline (tps) coefficients with subdomains for a field structure
113    'tps_eval';... %calculate the thin plate spline (tps) interpolation at a set of points
114    'tps_eval_dxy';...% calculate the derivatives of thin plate spline (tps) interpolation at a set of points (limited to the 2D case)
115    'translate_points';...% associated with GUI translate_points.fig to display translation parameters
116    'translate_points.fig';...
117    'uigetfile_uvmat';... browser, and display of directories, faster than the Matlab fct uigetfile
118    'update_imadoc';...  %update the ImaDoc xml file
119    'update_waitbar';... update the waitbar display, used for ACTION functions in the GUI 'series'
120    'uvmat';...% master function for file scanning and visualisation of 2D fields
121    'uvmat.fig';...  %interface for uvmat
122    'view_field.m';...% function for visualisation of projected fields'
123    'view_field.fig';...%GUI for view_field
124    'xml2struct';...% read an xml file as a Matlab structure, converts numeric character strings into numbers
125    };
126dir_fct=which('uvmat');% path to uvmat
129%% add the uvmat path to matlab if needed
130if isempty(regexp(path,[pathuvmat '(:|\>)'],'once'))
131    addpath(pathuvmat);
135%% loop on the list of functions in the uvmat package
137if ~exist('@xmltree','dir')
138    icount=icount+1;
139    checkmsg{icount}='ERROR installation: toolbox xmltree missing';
142for i=1:length(list_fct)
143    dir_fct=which(list_fct{i});% path to fct
144    if isempty(dir_fct)
145        icount=icount+1;
146        checkmsg{icount}=[list_fct{i} ' not found'];% test for function not found
147    else
148        pth=fileparts(dir_fct);
149        if ~isequal(pathuvmat,pth) && ~isequal(fullfile(pathuvmat,'private'),pth)
150            icount=icount+1;
151            checkmsg{icount}=[dir_fct ' overrides the package UVMAT'];% bad path for the function
152        end
153        datfile=dir(dir_fct);
154        if isfield(datfile,'datenum')
155            datnum(i)= datfile.datenum;
156        end
157    end
161%% check svn status
162[status,result]=system('svn --help');
163if status==0
164    svn_info.rep_rev=0;svn_info.cur_rev=0;
165    [tild,result]=system(['svn info ' dir_fct]);
166    t=regexp(result,'\s*:\s*(?<rev>\d+)','names');
167    if ~isempty(t)
168        svn_info.cur_rev=str2double(t.rev);
169    end
170    [tild,result]=system(['svn info -r ''HEAD'' '  pathuvmat]);
171    t=regexp(result,'\s*:\s*(?<rev>\d+)','names');
172    if ~isempty(t)
173        svn_info.rep_rev=str2double(t.rev);
174    end
175    [tild,result]=system(['svn status '  pathuvmat]);
176    svn_info.status=result;
177    checkmsg =[checkmsg {['SVN revision : ' num2str(svn_info.cur_rev)]}];
178    if svn_info.rep_rev>svn_info.cur_rev
179        checkmsg =[checkmsg ...
180            {['Repository now at revision ' num2str(svn_info.rep_rev) '. Please type svn update in uvmat folder']}];
181    end
182    modifications=regexp(svn_info.status,'M\s[^(\n|\>)]+','match');
183    if ~isempty(modifications)
184        for ilist=1:numel(modifications)
185            [tild,FileName,FileExt]=fileparts(modifications{ilist});
186            checkmsg=[checkmsg {[FileName FileExt ' modified']}];
187        end
188    end
190    checkmsg=[checkmsg {'SVN not available'}];
194%% check dates of compilation
198for ilist=1:numel(list_compile)
199    mfile=regexprep(list_compile(ilist).name,'.sh$','.m');
200    if exist(mfile,'file')
201        datfile=dir(mfile);
202        if ~isempty(datfile) && isfield(datfile,'datenum') && datfile.datenum>list_compile(ilist).datenum
203            checkmsg=[checkmsg;{[list_compile(ilist).name ' needs to be updated by compile_functions']}];
204        end
205    end
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