%'civ_3D': function associated with the interface 'civ_3D.fig' for PIV in volume %------------------------------------------------------------------------ % provides an interface for the software CIVx % function varargout = civ_3D(varargin) % provides an interface for the software CIVx % %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA % This file is part of the toolbox UVMAT. % % UVMAT is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published by % the Free Software Foundation; either version 2 of the License, or % (at your option) any later version. % % UVMAT is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License (file UVMAT/COPYING.txt) for more details. %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA function varargout = civ_3D(varargin) % Last Modified by GUIDE v2.5 26-Mar-2010 22:51:31 % Begin initialization code - DO NOT EDIT gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @civ_3D_OpeningFcn, ... 'gui_OutputFcn', @civ_3D_OutputFcn, ... 'gui_LayoutFcn', [] , ... 'gui_Callback', []); if nargin & isstr(varargin{1}) gui_State.gui_Callback = str2func(varargin{1}); end if nargout [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); else gui_mainfcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT %-------------------------------------------------------------------------- % --- Executes just before civ_3D is made visible. %-------------------------------------------------------------------------- function civ_3D_OpeningFcn(hObject, eventdata, handles, varargin) % This function has no output args, see OutputFcn. % hObject handle to figure % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % varargin command line arguments to civ_3D (see VARARGIN) global test_batch patch_new_exe%=1 if patch processing available %filebase: root name %nom_type: nomencalture used ('png_old','_i_j'...) %list of field numbers to process %subdir: subdirectory of the opened netcdf file %ind_opening: operation number advised for beginning (1=civ1,2=fix1,3=patch1,4=civ2,5=fix2,6=patch2), %ind_a_opening ind_b_opening chosen pair from the opened netcdf file % Choose default command line output for civ_3D handles.output = hObject; % Update handles structure guidata(hObject, handles); %default initial parameters filebase=''; % root file name ('filebase'.civ_3D) nom_type=[]; % nomenclature type ext=[]; testall=0; browse=[]; %load the initial parameters if the interface is started from uvmat if ~isempty(varargin)% the interface is opened from uvmat varcell=varargin{1}; filebase=varcell{1}; nom_type_read=varcell{2}; num1=varcell{3}; num2=varcell{4}; num_a=varcell{5}; num_b=varcell{6}; subdir=varcell{7}; ind_opening=varcell{8}; ind_a_opening=varcell{9}; ind_b_opening=varcell{10}; ext=varcell{11}; else num1=1; % set of field i numbers num2=2; % set of field i numbers num_a=1; % set of field j numbers (fields a) num_b=1; % second set of field j numbers (fields b) subdir='A'; % subdir for the netcdf result files ind_opening=1; % proposed operation number (1=civ1,2=fix1,3=patch1,4=civ2,5=fix2,6=patch2) ind_a_opening=1; % proposed index in the menu of fields a ind_b_opening=2; % proposed index in the menu of fields b end if exist('ext','var') & length(ext)>1 & (~isempty(imformats(ext([2:end])))|... isequal(ext,'.avi')|isequal(ext,'.AVI'));%if an image file has been opened by uvmat browse.ext_ima=ext; if exist('nom_type_read','var') browse.nom_type_ima=nom_type_read; % the image nomenclature is stored end elseif isequal(ext,'.nc') if exist('nom_type_read','var') browse.nom_type_nc=nom_type_read;% the netcdf nomenclature is stored end end set(handles.displ_filebase,'String',filebase); set(handles.ImaDoc,'UserData',testall); set(handles.browse_root,'UserData',browse) set(handles.ImaDoc,'String',ext) % set(handles.ImaDoc,'String',ext) %read names of the .exe file to adjust the interface according to %available prog %read names of the .exe file path_uvmat=which('uvmat');% check the path detected for source file uvmat path_UVMAT=fileparts(path_uvmat); %path to UVMAT if isunix syst='LINUX' %fid = fopen(fullfile(path_UVMAT,'PARAM_LINUX.txt'),'r');%open the file with civ_3D binary names xmlfile=fullfile(path_UVMAT,'PARAM_LINUX.xml') if exist(xmlfile,'file') t=xmltree(xmlfile); sparam=convert(t); end else syst='WIN' %fid = fopen(fullfile(path_UVMAT,'PARAM_WIN.txt'),'r');%open the file with civ_3D binary names xmlfile=fullfile(path_UVMAT,'PARAM_WIN.xml'); if exist(xmlfile,'file') t=xmltree(xmlfile); sparam=convert(t); end end patch_new_exe=''; todo_patch=''; sge=0; if isfield(sparam,'PatchNew_exe') patch_new_exe=sparam.PatchNew_exe; end if isfield(sparam,'Todo_path') todo_path=sparam.Todo_path end if isfield(sparam,'SGE') sge=str2num(sparam.SGE); end name_todo=fullfile(todo_path,'TODO.txt') test_batch=1; if ~sge if isequal(todo_path,'') |isequal(todo_path,[]) ['no batch distributed processing available:file path TODO.txt not defined in UVMAT/PARAM_' syst] test_batch=0; end if exist(name_todo,'file')~=2 msgbox_uvmat('ERROR',['no batch distributed processing available, queue file ' name_todo ' absent']); % test_batch=0; % Problems to detect file on linux/nfs filesystems end end if test_batch==0 set(handles.BATCH,'BackgroundColor',[0.831 0.816 0.784])% put the BATCH button in grey (unactivated) end set(handles.subdir_civ1,'String',subdir)%default subdir on which uvmat was working set(handles.subdir_civ2,'String',subdir)%default subdir on which uvmat was working %initiate advised operations if isequal(ind_opening,[]) ind_opening=1; % default end % set default operation options enable_civ1(handles,'off') enable_civ2(handles,'off') desable_fix1(handles) desable_patch1(handles) desable_fix2(handles) desable_patch2(handles) set(handles.CIV1,'Value',0) set(handles.FIX1,'Value',0) set(handles.PATCH1,'Value',0) set(handles.CIV2,'Value',0) set(handles.FIX2,'Value',0) set(handles.PATCH2,'Value',0) set(handles.frame_subdirciv2,'BackgroundColor',[0.831 0.816 0.784]) if isequal(ind_opening,1) set(handles.CIV1,'Value',1) enable_civ1(handles,'on') elseif isequal(ind_opening,2) set(handles.FIX1,'Value',1) enable_fix1(handles) elseif isequal(ind_opening,3) set(handles.PATCH1,'Value',1) enable_patch1(handles) elseif isequal(ind_opening,4) set(handles.CIV2,'Value',1) enable_civ2(handles,1) elseif isequal(ind_opening,5) set(handles.FIX2,'Value',1) enable_fix2(handles) set(handles.frame_subdirciv2,'BackgroundColor',[1 1 0]) set(handles.list_pair_civ2,'Enable','On') set(handles.list_pair_civ2,'Enable','On') elseif isequal(ind_opening,6) set(handles.PATCH2,'Value',1) enable_patch2(handles) set(handles.frame_subdirciv2,'BackgroundColor',[1 1 0]) set(handles.list_pair_civ2,'Enable','On') end % set the range of fields (1:1 by default) and selected pair if isempty(num2)|isequal(num2,num1) num_ref_i=num1; else num_ref_i=floor((num1+num2)/2); browse.incr_pair(1)=num2-num1; browse.incr_pair(2)=0; end if isempty(num_b)|isequal(num_a,num_b) if isempty(num_a) num_ref_j=1; else num_ref_j=num_a; end else num_ref_j=floor((num_a+num_b)/2); browse.incr_pair(2)=num_b-num_a; end set(handles.first_i,'String',num2str(num_ref_i)); set(handles.last_i,'String',num2str(num_ref_i)); set(handles.ref_i,'String',num2str(num_ref_i)); set(handles.browse_root,'UserData',browse); if ~isempty(varargin)% the interface is opened from uvmat displ_filebase_Callback(hObject, eventdata, handles); end set(handles.waitbar_1,'Position',[0.946 0.877 0.03 0.001]) set(handles.waitbar_patch1,'Position',[0.946 0.626 0.03 0.001]) set(handles.waitbar_civ2,'Position',[0.946 0.406 0.03 0.001]) set(handles.waitbar_patch2,'Position',[0.946 0.187 0.03 0.001]) %-------------------------------------------------------------- % --- Outputs from this function are returned to the command line. %----------------------------------------------------------------- function varargout = civ_3D_OutputFcn(hObject, eventdata, handles) % varargout cell array for returning output args (see VARARGOUT); % hObject handle to figure % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Get default command line output from handles structure varargout{1} = handles.output; %------------------------------------------------------------------ % --- Executes on button press in browse_root. function browse_root_Callback(hObject, eventdata, handles) %get the input file properties filebase=get(handles.displ_filebase,'String'); oldfile=''; %default if isempty(filebase)|isequal(filebase,'')%loads the previously stored file name and set it as default in the file_input box dir_perso=prefdir; profil_perso=fullfile(dir_perso,'uvmat_perso.mat') if exist(profil_perso,'file') h=load (profil_perso); if isfield(h,'filebase')&ischar(h.filebase) oldfile=h.filebase; end if isfield(h,'RootPath')&ischar(h.RootPath) % oldfile=h.filebase{1} oldfile=h.RootPath; end end else oldfile=filebase; end testall=get(handles.ImaDoc,'UserData'); ind_opening=1;%default browse.incr_pair=[0 0]; %default menu={'*.*', 'All Files (*.*)'; '*.xml;*.vol; *.avi;*.AVI','(*.xml,*.civ,*.avi,*.vol)'; ... '*.xml', '.xml files';'*.civ', '.civ files';... '*.avi;*.AVI', '.avi files';'*.vol', '.vol files'}; [FileName, PathName, filtindex] = uigetfile( menu, 'Pick a file',oldfile); fileinput=[PathName FileName];%complete file name sizf=size(fileinput); if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end %stop if fileinput not a character string [path,name,ext]=fileparts(fileinput); testeditxml=0; if isequal(ext,'.xml') testeditxml=1; t_browse=xmltree(fileinput); head_element=get(t_browse,1); if isfield(head_element,'name')& isequal(head_element.name,'ImaDoc') testeditxml=0; end end if testeditxml==1 | isequal(ext,'.xls') heditxml=editxml({fileinput}); set(heditxml,'Tag','browser') waitfor(heditxml,'Tag','idle') if ~ishandle(heditxml) return end attr=findobj(get(heditxml,'children'),'Tag','CurrentAttributes'); set(handles.browse,'UserData',fileinput)% store for future opening with browser fileinput=get(attr,'UserData'); if ~exist(fileinput,'file') return end end [RootPath,RootFile,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fileinput); filebase=fullfile(RootPath,RootFile); if isequal(get(handles.compare,'Value'),1) browse=get(handles.browse_root,'UserData'); else browse=[];%initialisation end if length(ext)>1 & (~isempty(imformats(ext([2:end])))||... isequal(lower(ext),'.avi')||isequal(ext,'.vol'));%if an image file has been opened by uvmat browse.ext_ima=ext; browse.nom_type_ima=nom_type; browse.field_count=str2num(field_count); end set(handles.ImaDoc,'String',ext); %%%%% read the state of the selected netcdf file to advise default operation if isequal(ext,'.nc') browse.nom_type_nc=nom_type; ind_opening=2;% propose 'fix' as the default option Data=nc2struct(fileinput,[]); if isfield(Data,'fix') & isequal(Data.fix,1) ind_opening=3; end if isfield(Data,'patch') & isequal(Data.patch,1) ind_opening=4; end if isfield(Data,'civ2') & isequal(Data.civ2,1) ind_opening=5; end if isfield(Data,'fix2') & isequal(Data.fix2,1) ind_opening=6; end if isfield(Data,'pixcmx') & isequal(Data,'pixcmy') browse.pxcmx=Data.pixcmx; browse.pxcmy=Data.pixcmy; end testciv=1; %TO SUPPRESS WITH NEW VERSION OF CIVX subdir='';%default if testciv [Pathbase,Namebase]=fileparts(filebase) [Pathprev,subdir,extdir]=fileparts(Pathbase) subdir=[subdir extdir] % if isequal (subdir,subdir_obs) filebase=fullfile(Pathprev,Namebase)% move upward to get the base name (corresponding to the .civ_3D file and images) % end end set(handles.subdir_civ1,'String',subdir);%set the default subdir directories for installing the .nc results set(handles.subdir_civ2,'String',subdir); browse.testciv=testciv; browse.ind_opening=ind_opening; end set(handles.displ_filebase,'String',filebase); set(handles.ImaDoc,'String',ext); if ~isempty(str2num(field_count)) ref_i=str2num(field_count); if ~isempty(str2num(str2)) ref_i=floor((ref_i+str2num(str2))/2);% reference image number corresponding to the file browse.incr_pair(1)=str2num(str2)-str2num(field_count); browse.incr_pair(2)=0; end set(handles.first_i,'String',num2str(ref_i)); set(handles.last_i,'String',num2str(ref_i)); set(handles.ref_i,'String',num2str(ref_i)); end if isequal(ind_opening,1) set(handles.CIV1,'Value',1) enable_civ1(handles,'on') elseif isequal(ind_opening,2) set(handles.FIX1,'Value',1) enable_fix1(handles) elseif isequal(ind_opening,3) set(handles.PATCH1,'Value',1) enable_patch1(handles) elseif isequal(ind_opening,4) set(handles.CIV2,'Value',1) enable_civ2(handles,1) elseif isequal(ind_opening,5) set(handles.FIX2,'Value',1) enable_fix2(handles) set(handles.frame_subdirciv2,'BackgroundColor',[1 1 0]) set(handles.list_pair_civ2,'Enable','On') set(handles.list_pair_civ2,'Enable','On') elseif isequal(ind_opening,6) set(handles.PATCH2,'Value',1) enable_patch2(handles) set(handles.frame_subdirciv2,'BackgroundColor',[1 1 0]) set(handles.list_pair_civ2,'Enable','On') end set(handles.browse_root,'UserData',browse);% store information from browser testall=isequal(menu(filtindex,1),{'*.*'}); set(handles.ImaDoc,'UserData',testall); displ_filebase_Callback(hObject, eventdata, handles); %------------------------------------------------ function ImaDoc_Callback(hObject, eventdata, handles) displ_filebase_Callback(hObject, eventdata, handles) %-------------------------------------------------------------- %function activated when a new filebase (image series) is introduced %------------------------------------------------------------ function displ_filebase_Callback(hObject, eventdata, handles) global test_batch set(gcf,'Pointer','watch') ext_ima=[]; %default nom_type_ima=[];%default field_count=1;%default nom_type_nc=[]; npx=[];%default npy=[]; TimeUnit='s'; %default CoordUnit='cm';%default pxcmx_search=[];%default pxcmy_search=[];%default filebase=get(handles.displ_filebase,'String'); ext=get(handles.ImaDoc,'String'); browse=get(handles.browse_root,'UserData');%default if ~isempty(browse) if isfield(browse,'ext_ima') ext_ima=browse.ext_ima; end if isfield(browse,'nom_type_ima') nom_type_ima=browse.nom_type_ima; end if isfield(browse,'field_count') field_count=browse.field_count; end end %default first_i and j and increments first_i=str2num(get(handles.first_i,'String'));%value possibly set by uvmat_Opening if isempty(first_i)| first_i < 1 first_i=1; %default first_i end last_i=str2num(get(handles.last_i,'String')); if isempty(last_i)| last_i < first_i last_i=first_i; %default last_i end incr_i=str2num(get(handles.incr_i,'String')); if isempty(incr_i) | incr_i < 1; set(handles.incr_i,'String','1') %default incr_i end dt=[];%default testmode=0;%default nbfield=1; %default if isfield(browse,'pxcmx') & isfield(browse,'pxcmy') pxcmx=num2str(browse.pxcmx); pxcmy=num2str(browse.pxcmy); else pxcmx=1;%default pxcmy=1; end %look for an image documentation file if ~isequal(ext,'.xml') & ~ isequal(ext,'.avi')& ~ isequal(ext,'.AVI') if exist([filebase '.xml'],'file') ext='.xml'; set(handles.ImaDoc,'String','.xml') elseif exist([filebase '.civ_3D'],'file') ext='.civ_3D'; set(handles.ImaDoc,'String','.civ_3D') elseif exist([filebase '.avi'],'file') ext='.avi'; set(handles.ImaDoc,'String','.avi') elseif exist([filebase '.AVI'],'file') ext='.AVI'; set(handles.ImaDoc,'String','.AVI') end end %%%%%%%% read image documentation file %%%%%%%%%%%%%%%%%%%%%%%%%%% mode=''; %default if isequal(ext,'.xml') [XmlData,warntext]=imadoc2struct([filebase '.xml']) if isfield(XmlData,'Heading')&&isfield(XmlData.Heading','ImageName') [PP,FF,fc,str2,str_a,str_b,ext_ima_read,nom_type_read]=name2display(XmlData.Heading.ImageName); end if isfield(XmlData,'TimeUnit') TimeUnit=XmlData.TimeUnit; end if isfield(XmlData,'Npx')&&isfield(XmlData,'Npy') set(handles.npx,'String',num2str(XmlData.Npx)); set(handles.npy,'String',num2str(XmlData.Npy)); end if isfield(XmlData,'Time')&&~isempty(XmlData.Time) time=XmlData.Time; set(handles.npz,'String',num2str(size(time,2))); end pxcmx_search=1; pxcmy_search=1; if isfield(XmlData,'GeometryCalib') tsai=XmlData.GeometryCalib; if isfield(tsai,'f') & isfield(tsai,'Tz') & isfield(tsai,'dpx') & isfield(tsai,'dpy')& isfield(tsai,'R') rot2D=tsai.R([1:2],[1,2]); pxcmx_search=tsai.f * sqrt(det(rot2D))/(tsai.Tz*tsai.dpx); pxcmy_search=tsai.f * sqrt(det(rot2D))/(tsai.Tz*tsai.dpy); end if isfield(tsai,'CoordUnit') CoordUnit=tsai.CoordUnit; end end if isempty(ext_ima_read) ext_ima='.png';%default else ext_ima=ext_ima_read; end if isempty(nom_type_read) nom_type_ima='_i_j'; msgbox_uvmat('WARNING','no ImageName defined in ImaDoc/Heading, take _i_j indexing by default') else nom_type_ima=nom_type_read; end elseif isequal(ext,'.avi')|isequal(ext,'.AVI') nom_type_ima='avi'; ext_ima=ext; set(handles.mode,'String',{'series(Di)'}) dt=0.04;%default if exist([filebase ext],'file')==2 info=aviinfo([filebase ext]);%read infos on the avi movie dt=1/info.FramesPerSecond;%time interval between successive frames nbfield=info.NumFrames;%number of frames end time=(dt*[0:nbfield-1])';%list of image times set(handles.dt,'String',num2str(dt*1000));%store the time interval between successive images % no image documentation file found: look for a series of existing images or .nc files elseif ~isequal(ext,'.nc') subdir=get(handles.subdir_civ1,'String'); incr_pair=[0 0];%default if isfield(browse,'incr_pair') incr_pair=browse.incr_pair; end nbdetect=0;%test of detected images field_i=field_count; idetect=1; % imagename='';%default while idetect==1 %look for the maximum file number in the series field_i=field_i+1; % imagename_last=imagename; imagename=name_generator(filebase,field_i,1,ext_ima,nom_type_ima); idetect=exist(imagename,'file'); if isequal(nom_type_ima,'none') idetect=0; %stop if the same image is repeated (if nom_type='none') nbdetect=1; end %SEE CASE OF NETCDF FILES nbdetect=nbdetect+idetect; end % nb_field=field_i-1;% last detected field number nb_field=field_i;% last detected field number field_i=field_count;%look for the minimum file number in the series idetect=1; while idetect==1 field_i=field_i-1; imagename=name_generator(filebase,field_i,1,ext_ima,nom_type_ima); idetect=exist(imagename,'file'); if isequal(nom_type_ima,'none') idetect=0; %stop if the same image is repeted (if nom_type='none') nbdetect=1; end nbdetect=nbdetect+idetect; end first_i=max(field_i+1,1); %determine the set of times and possible intervals for CIV_3D % dt=(1/1000)*str2num(get(handles.dt,'String')); time=(0:nb_field-1)'; % set(handles.incr_i,'UserData',dt);%store the time interval % between successive images %displ_num:list of possible time intervals for civ_3D calculations set(handles.mode,'String',{'series(Di)'}) end if isequal(nom_type_ima,'none')% no file numbering used first_i=1; last_i=1; first_j=1; last_j=1; end if exist('time','var') nbfield=size(time,1); set(handles.displ_filebase,'UserData',time); %store the set of times set(handles.TimeUnit,'String',TimeUnit); set(handles.nb_field,'String',num2str(nbfield)); end set(handles.CoordUnit,'String',[CoordUnit '/']) if isempty(pxcmx_search) set(handles.calcul_search,'UserData',[pxcmx pxcmy]); else set(handles.calcul_search,'UserData',[pxcmx_search pxcmy_search]); end set(handles.first_i,'String',num2str(first_i)); set(handles.last_i,'String',num2str(last_i));% browse.ext_ima=ext_ima; browse.nom_type_ima=nom_type_ima; set(handles.browse_root,'UserData',browse)% store the nomenclature type %%%%%%%%%%% set the menus of image pairs and default selection for civ_3D %%%%%%%%%%%%%%%%%%% if isequal(get(handles.compare,'Value'),1) if isequal(nom_type_ima,'_i')| isequal(nom_type_nc,'_i1-i2')|~exist('nbfield2','var')|(nbfield2==1) set(handles.mode,'String',{'st_series(Di)';'displacement'}) set(handles.mode,'Value',1) elseif (nbfield==1)% simple series in j set(handles.mode,'String',{'st_series(Dj)';'displacement'}) set(handles.mode,'Value',1) else set(handles.mode,'String',{'st_pair j1-j2';'st_series(Dj)';'st_series(Di)';'displacement'})%multiple choice if isequal(mode,'volume') set(handles.mode,'Value',3) elseif nbfield2 <= 5 set(handles.mode,'Value',1)% advice 'pair j1-j2' for small bursts end end else if isequal(nom_type_ima,'_i')| isequal(nom_type_nc,'_i1-i2')|~exist('nbfield2','var')|(nbfield2==1) set(handles.mode,'String',{'series(Di)'}) set(handles.mode,'Value',1) elseif isequal(nom_type_ima,'png_old')|isequal(nom_type_nc,'netc_old') set(handles.mode,'String',{'pair j1-j2'}) set(handles.mode,'Value',1) elseif (nbfield==1)% simple series in j set(handles.mode,'String',{'series(Dj)'}) set(handles.mode,'Value',1) else set(handles.mode,'String',{'pair j1-j2';'series(Dj)';'series(Di)'})%multiple choice if isequal(mode,'volume') set(handles.mode,'Value',3) elseif nbfield2 <= 5 set(handles.mode,'Value',1)% advice 'pair j1-j2' for small bursts else set(handles.mode,'Value',2)% advice series Dj for long bursts, not volume end end end mode_Callback(hObject, eventdata, handles) %%%%%% initialize waitbars and RUN button set(handles.waitbar_1,'Position',[0.946 0.876 0.03 0.001]) set(handles.waitbar_patch1,'Position',[0.946 0.439 0.03 0.001]) set(handles.waitbar_civ2,'Position',[0.946 0.219 0.03 0.001]) set(handles.waitbar_patch2,'Position',[0.946 0.0 0.03 0.001]) set(handles.RUN, 'Enable','On') set(handles.RUN,'BackgroundColor',[1 0 0]) if isequal(test_batch,1)%if batch installation is available set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) end %%%%% store the root input filename for future opening dir_perso=prefdir; profil_perso=fullfile(prefdir,'uvmat_perso.mat'); RootPath=fileparts(filebase); if exist(profil_perso,'file') save (profil_perso,'RootPath','-append'); %store the root name for future opening of uvmat else txt=ver('MATLAB'); Release=txt.Release; relnumb=str2num(Release(3:4)); if relnumb >= 14 save (profil_perso,'RootPath','-V6'); %store the root name for future opening of uvmat else save (profil_perso,'RootPath'); %store the root name for future opening of uvmat end end % save(profil_perso, 'filebase'); %store the root name for future opening of uvmat set(gcf,'Pointer','arrow') %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%???????????? % --- Executes on button press in mode. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function mode_Callback(hObject, eventdata, handles) browse=get(handles.browse_root,'UserData'); mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; displ_num=[];%default first_i=str2num(get(handles.first_i,'String')); % last_i=str2num(get(handles.last_i,'String')); time=get(handles.displ_filebase,'UserData'); %get the set of times siztime=size(time); nbfield=siztime(1); nbfield2=siztime(2); indchosen=1; %%first pair selected by default if isequal(mode,'pair j1-j2')| isequal(mode,'st_pair j1-j2') dt=1; displ=''; index=0; %get all the time intervals in bursts displ_dt=1;%default nbfield2=min(nbfield2,10),%limitate the number of pairs to 10x10 % if nbfield2<2 % nbfield2=2, % end for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'pair j1-j2' mode for numod_b=(numod_a+1):nbfield2 index=index+1; numlist_a(index)=numod_a; numlist_b(index)=numod_b; if ~isempty(time) dt(numod_a,numod_b)=time(first_i,numod_b)-time(first_i,numod_a);%first time interval dt displ_dt(index)=dt(numod_a,numod_b); else displ_dt(index)=1 end end end [dtsort,indsort]=sort(displ_dt); displ_num(1,:)=numlist_a(indsort); displ_num(2,:)=numlist_b(indsort); displ_num(3,:)=0; displ_num(4,:)=0; set(handles.jtext,'Visible','Off') set(handles.first_j,'Visible','Off') set(handles.last_j,'Visible','Off') set(handles.incr_j,'Visible','Off') set(handles.nb_field2,'Visible','Off') set(handles.ref_j,'Visible','Off') elseif isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') for index=1:min(nbfield2-1,200) displ_num(1,index)=-floor(index/2); displ_num(2,index)=ceil(index/2); displ_num(3,index)=0; displ_num(4,index)=0; end set(handles.jtext,'Visible','On') set(handles.first_j,'Visible','On') set(handles.last_j,'Visible','On') set(handles.incr_j,'Visible','On') set(handles.nb_field2,'Visible','On') set(handles.ref_j,'Visible','On') if nbfield > 1 set(handles.itext,'Visible','On') set(handles.first_i,'Visible','On') set(handles.last_i,'Visible','On') set(handles.incr_i,'Visible','On') set(handles.nb_field,'Visible','On') set(handles.ref_i,'Visible','On') else set(handles.itext,'Visible','Off') set(handles.first_i,'Visible','Off') set(handles.last_i,'Visible','Off') set(handles.incr_i,'Visible','Off') set(handles.nb_field,'Visible','Off') set(handles.ref_i,'Visible','Off') end elseif isequal(mode,'series(Di)') | isequal(mode,'st_series(Di)') for index=1:min(nbfield-1,200) displ_num(1,index)=0; displ_num(2,index)=0; displ_num(3,index)=-floor(index/2); displ_num(4,index)=ceil(index/2); end set(handles.itext,'Visible','On') set(handles.first_i,'Visible','On') set(handles.last_i,'Visible','On') set(handles.incr_i,'Visible','On') set(handles.nb_field,'Visible','On') set(handles.ref_i,'Visible','On') elseif isequal(mode,'displacement')%the pairs have the same indices displ_num(1,1)=0; displ_num(2,1)=0; displ_num(3,1)=0; displ_num(4,1)=0; if nbfield > 1 set(handles.itext,'Visible','On') set(handles.first_i,'Visible','On') set(handles.last_i,'Visible','On') set(handles.incr_i,'Visible','On') set(handles.nb_field,'Visible','On') set(handles.ref_i,'Visible','On') else set(handles.itext,'Visible','Off') set(handles.first_i,'Visible','Off') set(handles.last_i,'Visible','Off') set(handles.incr_i,'Visible','Off') set(handles.nb_field,'Visible','Off') set(handles.ref_i,'Visible','Off') end if nbfield2 > 1 set(handles.jtext,'Visible','On') set(handles.first_j,'Visible','On') set(handles.last_j,'Visible','On') set(handles.incr_j,'Visible','On') set(handles.nb_field2,'Visible','On') set(handles.ref_j,'Visible','On') else set(handles.jtext,'Visible','Off') set(handles.first_j,'Visible','Off') set(handles.last_j,'Visible','Off') set(handles.incr_j,'Visible','Off') set(handles.nb_field2,'Visible','Off') set(handles.ref_j,'Visible','Off') end end set(handles.list_pair_civ1,'UserData',displ_num); find_netcpair_civ1(hObject, eventdata, handles) find_netcpair_civ2(hObject, eventdata, handles) %-------------------------------------------------------------- % determine the menu for civ1 pairs depending on existing netcdf file at the middle of % the field series set by first_i, incr, last_i %---------------------------------------------------------------- function find_netcpair_civ1(hObject, eventdata, handles) set(gcf,'Pointer','watch') %nomenclature types filebase=get(handles.displ_filebase,'String'); [filepath,Nme,ext_dir]=fileparts(filebase); browse=get(handles.browse_root,'UserData'); mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; % nomenclature type of the .nc files nom_type_ima=[];%default if isfield(browse,'nom_type_ima') nom_type_ima=browse.nom_type_ima; end %determine nom_type_nc: nom_type_nc=[];%default if isfield(browse,'nom_type_nc') nom_type_nc=browse.nom_type_nc; end if isequal(nom_type_ima,'png_old') | isequal(nom_type_nc,'netc_old')| isequal(nom_type_ima,'raw_SMD') nom_type_nc='netc_old';%nom_type for the netcdf files elseif isequal(nom_type_ima,'none')|isequal(nom_type_nc,'none') nom_type_nc='none'; elseif isequal(nom_type_ima,'avi')|isequal(nom_type_ima,'_i')|isequal(nom_type_ima,'ima_num')|... isequal(nom_type_nc,'_i1-i2') nom_type_nc='_i1-i2'; elseif isequal(nom_type_ima,'_i_j1-j2')||isequal(nom_type_nc,'_i1-i2_j1-j2') nom_type_nc='_i1-i2_j1-j2'; else if isequal(mode,'series(Di)')|isequal(mode,'st_series(Di)') nom_type_nc='_i1-i2_j'; % PIV in volume else nom_type_nc='_i_j1-j2'; end end browse.nom_type_nc=nom_type_nc; set(handles.browse_root,'UserData',browse) %reads .nc subdirectoy and image numbers from the interface subdir_civ1=get(handles.subdir_civ1,'String');%subdirectory subdir_civ1 for the netcdf data first_i=str2num(get(handles.first_i,'String')); last_i=str2num(get(handles.last_i,'String')); incr=str2num(get(handles.incr_i,'String')); num1=first_i:incr:last_i; if isempty(num1) set(handles.list_pair_civ1,'String',{''}); return end ref_i=str2num(get(handles.ref_i,'String')); time=get(handles.displ_filebase,'UserData');%get the set of times if isempty(time) time=[0 1]; end displ_num=get(handles.list_pair_civ1,'UserData'); %eliminate the first pairs inconsistent with the position if isempty(displ_num) nbpair=0; else nbpair=length(displ_num(1,:));%nbre of displayed pairs if isequal(mode,'series(Di)') | isequal(mode,'st_series(Di)') nbpair=min(2*ref_i-1,nbpair);%limit the number of pairs with positive first index elseif isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') nbpair=min(2*ref_j-1,nbpair);%limit the number of pairs with positive first index end end nbpair=min(200,nbpair);%limit the number of displayed pairs to 200 %look for existing processed pairs involving the field at the middle of the series if civ1 will not % be performed, while the result is needed for next steps. displ_pair={''}; select=ones(size(1:nbpair));%default =1 for numbers of displayed pairs testpair=0; if get(handles.CIV1,'Value')==0 % dirname=fullfile(filepath,subdir_civ1,ext_dir); if ~exist(fullfile(filepath,subdir_civ1,ext_dir),'dir') msgbox_uvmat('ERROR',['no civ1 file available: subdirectory ' subdir_civ1 ' does not exist']); set(handles.list_pair_civ1,'String',{}); return end for ipair=1:nbpair filename=name_generator(filebase,ref_i+displ_num(3,ipair),ref_j+displ_num(1,ipair),'.nc',nom_type_nc,1,... ref_i+displ_num(4,ipair),ref_j+displ_num(2,ipair),subdir_civ1); select(ipair)=exist(filename,'file'); end if ~exist('select','var') | isequal(select,zeros(size(1:nbpair))) if isfield(browse,'incr_pair') num_i1=ref_i-floor(browse.incr_pair(1)/2); num_i2=ref_i+ceil(browse.incr_pair(1)/2); num_j1=ref_j-floor(browse.incr_pair(2)/2); num_j2=ref_j+ceil(browse.incr_pair(2)/2); [filename]=name_generator(filebase,num_i1,num_j1,'.nc',nom_type_nc,1,num_i2,num_j2,subdir_civ1); select(1)=exist(filename,'file'); testpair=1; else if isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') msgbox_uvmat('ERROR',['no civ1 file available for the selected reference index j=' num2str(ref_j) ' and subdirectory ' subdir_civ1]); else msgbox_uvmat('ERROR',['no civ1 file available for the selected reference index i=' num2str(ref_i) ' and subdirectory ' subdir_civ1]); end set(handles.list_pair_civ1,'String',{''}); %COMPLETER CAS STEREO return end end end if isequal(mode,'series(Di)') if testpair displ_pair{1}=['Di= ' num2str(-floor(browse.incr_pair(1)/2)) '|' num2str(ceil(browse.incr_pair(1)/2))]; else for ipair=1:nbpair if select(ipair) dt=time(ref_i+displ_num(4,ipair),1)-time(ref_i+displ_num(3,ipair),1);%time interval dt displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2)) ' :dt= ' num2str(dt*1000)]; else displ_pair{ipair}='...'; %pair not displayed in the menu end end end elseif isequal(mode,'pair j1-j2')%case of pairs for ipair=1:nbpair if select(ipair) dt=time(ref_i+displ_num(4,ipair),displ_num(2,ipair))-time(ref_i+displ_num(3,ipair),displ_num(1,ipair));%time interval dt displ_pair{ipair}=['j= ' num2stra(displ_num(1,ipair),nom_type_ima) '-' num2stra(displ_num(2,ipair),nom_type_ima) ... ' :dt= ' num2str(dt*1000)]; else displ_pair{ipair}='...'; %pair not displayed in the menu end end elseif isequal(mode,'displacement') displ_pair={'Di=Dj=0'}; end set(handles.list_pair_civ1,'String',displ_pair'); ichoice=min(find(select)); if (isempty(ichoice) | ichoice < 1); ichoice=1; end; initial=get(handles.list_pair_civ1,'Value'); if initial>nbpair |~isequal(select(initial),1) set(handles.list_pair_civ1,'Value',ichoice);% first valid pair proposed by default in the menu end set(handles.list_pair_civ2,'String',displ_pair'); initial=get(handles.list_pair_civ2,'Value'); if initial>nbpair |~isequal(select(initial),1) set(handles.list_pair_civ2,'Value',ichoice);% same pair proposed by default for civ2 end set(gcf,'Pointer','arrow') %-------------------------------------------------------------- % determine the menu for civ2 pairs depending on the existing netcdf file at the %middle of the series set by first_i, incr, last_i %-------------------------------------------------------------- function find_netcpair_civ2(hObject, eventdata, handles) return %do not exist in 3D set(gcf,'Pointer','watch') %nomenclature types filebase=get(handles.displ_filebase,'String'); [filepath,Nme,ext_dir]=fileparts(filebase); browse=get(handles.browse_root,'UserData'); mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; % nomenclature type of the .nc files nom_type_ima='ima_num';%default if isfield(browse,'nom_type_ima') nom_type_ima=browse.nom_type_ima; end nom_type_nc='_i1-i2';%default if isfield(browse,'nom_type_nc') nom_type_nc=browse.nom_type_nc; end if isequal(nom_type_ima,'png_old') | isequal(nom_type_ima,'netc_old')| isequal(nom_type_ima,'raw_SMD')| isequal(nom_type_nc,'netc_old') nom_type_nc='netc_old';%nom_type for the netcdf files elseif isequal(nom_type_ima,'none')|isequal(nom_type_nc,'none') nom_type_nc='none'; elseif isequal(nom_type_ima,'avi')|isequal(nom_type_ima,'_i')|isequal(nom_type_ima,'ima_num')|isequal(nom_type_nc,'_i1-i2') nom_type_nc='_i1-i2'; else if isequal(mode,'series(Di)')|isequal(mode,'st_series(Di)') nom_type_nc='_i1-i2_j'; % PIV in volume else nom_type_nc='_i_j1-j2'; end end browse.nom_type_nc=nom_type_nc; set(handles.browse_root,'UserData',browse) %reads .nc subdirectory and image numbers from the interface subdir_civ1=get(handles.subdir_civ1,'String');%subdirectory subdir_civ1 for the netcdf data subdir_civ2=get(handles.subdir_civ2,'String');%subdirectory subdir_civ2 for the netcdf data first_i=str2num(get(handles.first_i,'String')); last_i=str2num(get(handles.last_i,'String')); incr=str2num(get(handles.incr_i,'String')); num1=first_i:incr:last_i; if isempty(num1) set(handles.list_pair_civ2,'String',{}); return end ref_i=str2num(get(handles.ref_i,'String')); if isequal(mode,'pair j1-j2')|isequal(mode,'st_pair j1-j2') ref_j=0; else ref_j=str2num(get(handles.ref_j,'String')); end time=get(handles.displ_filebase,'UserData'); %get the set of times if isempty(time) time=[0 1];%default end dt_unit=str2num(get(handles.dt,'String'));% used when there is no image documentation file displ_num=get(handles.list_pair_civ1,'UserData'); %eliminate the first pairs inconsistent with the position if isempty(displ_num) nbpair=0; else nbpair=length(displ_num(1,:));%nbre of displayed pairs if isequal(mode,'series(Di)') | isequal(mode,'st_series(Di)') nbpair=min(2*ref_i-1,nbpair);%limit the number of pairs with positive first index elseif isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') nbpair=min(2*ref_j-1,nbpair);%limit the number of pairs with positive first index end end nbpair=min(200,nbpair);%limit the number of displayed pairs to 200 %look for existing processed pairs involving the field at the middle of the series if civ1 will not % be performed, while the result is needed for next steps. displ_pair={''}; %default select=ones(size(1:nbpair));%default =1 for nubers of displayed pairs if get(handles.CIV2,'Value')==0 & get(handles.CIV1,'Value')==0 & get(handles.FIX1,'Value')==0 & get(handles.PATCH1,'Value')==0%&... if ~exist(fullfile(filepath,subdir_civ2,ext_dir),'dir') errordlg(['no civ2 file available: subdirectory ' subdir_civ2 ' does not exist']) set(handles.list_pair_civ2,'String',{}); return end for ipair=1:nbpair [filename]=name_generator(filebase,ref_i+displ_num(3,ipair),ref_j+displ_num(1,ipair),'.nc',nom_type_nc,1,... ref_i+displ_num(4,ipair),ref_j+displ_num(2,ipair),subdir_civ1); select(ipair)=exist(filename,'file'); end if isequal(select,zeros(size(1:nbpair))) if isfield(browse,'incr_pair') num_i1=ref_i-floor(browse.incr_pair(1)/2); num_i2=ref_i+floor((browse.incr_pair(1)+1)/2); num_j1=ref_j-floor(browse.incr_pair(2)/2); num_j2=ref_j+floor((browse.incr_pair(2)+1)/2); filename=name_generator(filebase,num_i1,num_j1,'.nc',nom_type_nc,1,num_i2,num_j2,subdir_civ2); select(1)=exist(filename,'file'); else if isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') msgbox_uvmat('ERROR',['no civ2 file available for the selected reference index j=' num2str(ref_j) ' and subdirectory ' subdir_civ2]) else msgbox_uvmat('ERROR',['no civ2 file available for the selected reference index i=' num2str(ref_i) ' and subdirectory ' subdir_civ2]) end set(handles.list_pair_civ2,'String',{}); return end end end if isequal(mode,'series(Di)') | isequal(mode,'st_series(Di)') if ~isequal(get(handles.ext_txt,'String'),'dt(ms)=') for ipair=1:nbpair if select(ipair) dt=time(ref_i+displ_num(4,ipair),ref_j+displ_num(2,ipair))-time(ref_i+displ_num(3,ipair),ref_j+displ_num(1,ipair));%time interval dt displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2)) ' :dt= ' num2str(dt*1000)]; else displ_pair{ipair}='...'; %pair not displayed in the menu end end else for ipair=1:nbpair if select(ipair) displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2)) ' :dt= ' num2str(dt_unit*ipair)]; else displ_pair{ipair}='...'; %pair not displayed in the menu end end end elseif isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') % series on the j index for ipair=1:nbpair if select(ipair) dt=time(ref_i+displ_num(4,ipair),ref_j+displ_num(2,ipair))-time(ref_i+displ_num(3,ipair),ref_j+displ_num(1,ipair));%time interval dt displ_pair{ipair}=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2)) ' :dt= ' num2str(dt*1000)]; else displ_pair{ipair}='...'; %pair not displayed in the menu end end elseif isequal(mode,'pair j1-j2') | isequal(mode,'st_pair j1-j2') %case of pairs for ipair=1:nbpair if select(ipair) dt=time(ref_i+displ_num(4,ipair),displ_num(2,ipair))-time(ref_i+displ_num(3,ipair),displ_num(1,ipair));%time interval dt displ_pair{ipair}=['j= ' num2stra(displ_num(1,ipair),nom_type_ima) '-' num2stra(displ_num(2,ipair),nom_type_ima) ... ' :dt= ' num2str(dt*1000)]; else displ_pair{ipair}='...'; %pair not displayed in the menu end end elseif isequal(mode,'displacement') displ_pair={'Di=Dj=0'}; end set(handles.list_pair_civ2,'String',displ_pair'); ichoice=min(find(select)); if (isempty(ichoice) | ichoice < 1); ichoice=1; end; if get(handles.CIV2,'Value')==0 & get(handles.CIV1,'Value')==0 & get(handles.FIX1,'Value')==0 & get(handles.PATCH1,'Value')==0 set(handles.list_pair_civ2,'Value',ichoice);% first valid pair proposed by default in the menu end set(gcf,'Pointer','arrow') %---------------------------------------------------- % determine the list of index pairs of processing file %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function [num1_civ1,num2_civ1,num_a_civ1,num_b_civ1,num1_civ2,num2_civ2,num_a_civ2,num_b_civ2]=... find_pair_indices(handles,mode) first_i=str2num(get(handles.first_i,'String')); last_i=str2num(get(handles.last_i,'String')); incr=str2num(get(handles.incr_i,'String')); list_civ1=get(handles.list_pair_civ1,'String'); index_civ1=get(handles.list_pair_civ1,'Value'); str_civ1=list_civ1{index_civ1}; list_civ2=get(handles.list_pair_civ2,'String'); index_civ2=get(handles.list_pair_civ2,'Value'); str_civ2=list_civ2{index_civ2}; if isempty(first_i), msgbox_uvmat('ERROR','first field number not defined'),... set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; if isempty(last_i),msgbox_uvmat('ERROR','last field number not defined'),... set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; if isempty(incr), msgbox_uvmat('ERROR','increment in field number not defined'),... set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; if last_i < first_i , msgbox_uvmat('ERROR','last field number must be larger than the first one'),... set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; num1=[first_i:incr:last_i]; if isequal (mode,'series(Di)') %recognize the pair civ1 from the display indsel=find((double(str_civ1)<48)|(double(str_civ1)>57));% character indices of non numerical characters str_raw=str_civ1(indsel); indsepar=find(str_raw=='|'); %character index of the separator d1=str2num(str_civ1([indsel(indsepar-1)+1:indsel(indsepar)-1])); if indsepar==length(str_raw) d2=str2num(str_civ1([indsel(indsepar)+1:end])); else d2=str2num(str_civ1([indsel(indsepar)+1:indsel(indsepar+1)-1])); end %recognize the pair civ2 from the display num1_civ1=num1-d1;% set of first image numbers num2_civ1=num1+d2; num_a_civ1=1; num_b_civ1=1; num1_civ2=num1-floor(index_civ2/2)*ones(size(num1));% set of first image numbers num2_civ2=num1+ceil(index_civ2/2)*ones(size(num1)); num1_civ2=num1-d1;% set of first image numbers num2_civ2=num1+d2; num_a_civ2=1; num_b_civ2=1; % adjust the first and last field number lastfield=str2num(get(handles.nb_field,'String')); if isequal(lastfield,[]) indsel=find((num1_civ1 >= 1)&(num1_civ2 >= 1)); else indsel=find((num2_civ1 <= lastfield)&(num2_civ2 <= lastfield)&(num1_civ1 >= 1)&(num1_civ2 >= 1)); end if length(indsel)>=1 firstind=indsel(1); lastind=indsel(end); set(handles.first_i,'String',num2str(num1(firstind)))%update the display of first and last fields set(handles.last_i,'String',num2str(num1(lastind))) num1=num1(indsel); num1_civ1=num1_civ1(indsel); num1_civ2=num1_civ2(indsel); num2_civ1=num2_civ1(indsel); num2_civ2=num2_civ2(indsel); end elseif isequal (mode,'series(Dj)')|isequal (mode,'st_series(Dj)') lastfield_j=str2num(get(handles.nb_field2,'String')); num1_civ1=num1;% set of first image numbers num2_civ1=num1; num_a_civ1=num_j-floor(index_civ1/2)*ones(size(num_j)); num_b_civ1=num_j+ceil(index_civ1/2)*ones(size(num_j)); num1_civ2=num1; num2_civ2=num1; num_a_civ2=num_j-floor(index_civ2/2)*ones(size(num_j)); num_b_civ2=num_j+ceil(index_civ2/2)*ones(size(num_j)); % adjust the first and last field number if isequal(lastfield_j,[]) indsel=find((num_a_civ1 >= 1)&(num_a_civ2 >= 1)); else indsel=find((num_b_civ1 <= lastfield_j)&(num_b_civ2 <= lastfield_j)&(num_a_civ1 >= 1)&(num_a_civ2 >= 1)); end if length(indsel)>=1 firstind=indsel(1); lastind=indsel(end); set(handles.first_j,'String',num2str(num_j(firstind)))%update the display of first and last fields set(handles.last_j,'String',num2str(num_j(lastind))) num_j=num_j(indsel); num_a_civ1=num_a_civ1(indsel); num_a_civ2=num_a_civ2(indsel); num_b_civ1=num_b_civ1(indsel); num_b_civ2=num_b_civ2(indsel); end elseif isequal(mode,'pair j1-j2') | isequal(mode,'st_pair j1-j2') %case of bursts (png_old or png_2D) num1_civ1=num1; num1_civ2=num1; displ_num=get(handles.list_pair_civ1,'UserData'); num2_civ1=num1; num_a_civ1=displ_num(1,index_civ1); num_b_civ1=displ_num(2,index_civ1); num2_civ2=num1; num_a_civ2=displ_num(1,index_civ2); num_b_civ2=displ_num(2,index_civ2); elseif isequal(mode,'displacement') num1_civ1=num1; num2_civ1=num1; num_a_civ1=num_j; num_b_civ1=num_j; num1_civ2=num1; num2_civ2=num1; num_a_civ2=num_j; num_b_civ2=num_j; end %------------------------------------------------------------- % --- Executes on selection change in list_pair_civ1. function list_pair_civ1_Callback(hObject, eventdata, handles) %------------------------------------------------------------ %reproduce by default the chosen pair in the civ2 menu list_pair=get(handles.list_pair_civ1,'String');%get the menu of image pairs index_pair=get(handles.list_pair_civ1,'Value'); displ_num=get(handles.list_pair_civ1,'UserData'); num_a=displ_num(1,index_pair); num_b=displ_num(2,index_pair); set(handles.list_pair_civ2,'Value',index_pair); %update first_i and last_i according to the chosen image pairs mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; if isequal(mode,'series(Di)') first_i=str2num(get(handles.first_i,'String')); last_i=str2num(get(handles.last_i,'String')); incr_i=str2num(get(handles.incr_i,'String')); num1=first_i:incr_i:last_i; lastfield=str2num(get(handles.nb_field,'String')); if ~isequal(lastfield,[]) ind=find((num1-floor(index_pair/2)*ones(size(num1))>0)& ... (num1+ceil(index_pair/2)*ones(size(num1))<=lastfield)); num1=num1(ind); end set(handles.first_i,'String',num2str(num1(1))); set(handles.last_i,'String',num2str(num1(end))); elseif isequal(mode,'series(Dj)') first_j=str2num(get(handles.first_j,'String')); last_j=str2num(get(handles.last_j,'String')); incr_j=str2num(get(handles.incr_j,'String')); num_j=first_j:incr_j:last_j; lastfield2=str2num(get(handles.nb_field2,'String')); if ~isequal(lastfield2,[]) ind=find((num_j-floor(index_pair/2)*ones(size(num_j))>0)& ... (num_j+ceil(index_pair/2)*ones(size(num_j))<=lastfield2)); num1=num_j(ind); end set(handles.first_j,'String',num2str(num1(1))); set(handles.last_j,'String',num2str(num1(end))); end %------------------------------------------------------------------ % --- Executes on selection change in list_pair_civ2. function list_pair_civ2_Callback(hObject, eventdata, handles) index_pair=get(handles.list_pair_civ2,'Value');%get the selected position index in the menu %update first_i and last_i according to the chosen image pairs mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; if isequal(mode,'series(Di)') first_i=str2num(get(handles.first_i,'String')); last_i=str2num(get(handles.last_i,'String')); incr_i=str2num(get(handles.incr_i,'String')); num1=first_i:incr_i:last_i; lastfield=str2num(get(handles.nb_field,'String')); if ~isequal(lastfield,[]) ind=find((num1-floor(index_pair/2)*ones(size(num1))>0)& ... (num1+ceil(index_pair/2)*ones(size(num1))<=lastfield)); num1=num1(ind); end set(handles.first_i,'String',num2str(num1(1))); set(handles.last_i,'String',num2str(num1(end))); elseif isequal(mode,'series(Dj)') first_j=str2num(get(handles.first_j,'String')); last_j=str2num(get(handles.last_j,'String')); incr_j=str2num(get(handles.incr_j,'String')); num_j=first_j:incr_j:last_j; lastfield2=str2num(get(handles.nb_field2,'String')); if ~isequal(lastfield2,[]) ind=find((num_j-floor(index_pair/2)*ones(size(num_j))>0)& ... (num_j+ceil(index_pair/2)*ones(size(num_j))<=lastfield)); num1=num_j(ind); end set(handles.first_j,'String',num2str(num1(1))); set(handles.last_j,'String',num2str(num1(end))); end %----------------------------------------------------------- % --- Executes on button press in BATCH: remote processing %----------------------------------------------------------- function BATCH_Callback(hObject, eventdata, handles) global civ1_exe civ2_exe patch_exe patch_new_exe fix_exe todo_path sge Civ_exe % pxcmx=get(handles.pxcmx,'String'); % pxcmy=get(handles.pxcmy,'String'); % npx=get(handles.pxcmx,'UserData'); % npy=get(handles.pxcmy,'UserData'); %check the list of operations: operations={'CIV1','FIX1','PATCH1','CIV2','FIX2','PATCH2'}; run_flag=1; box_test(1)=get(handles.CIV1,'Value'); box_test(2)=get(handles.FIX1,'Value'); box_test(3)=get(handles.PATCH1,'Value'); box_test(4)=get(handles.CIV2,'Value'); box_test(5)=get(handles.FIX2,'Value'); box_test(6)=get(handles.PATCH2,'Value'); index=find(box_test==1); if isempty(index) errordlg('no selected operation') set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) return end index_first=min(index); index_last=max(index); box_used=box_test([index_first : index_last]); [box_missing,ind_missing]=min(box_used); if isequal(box_missing,0) errordlg(['missing' cell2mat(operations(ind_missing))]); set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) return end %check mask if selecetd if isequal(get(handles.get_mask_civ1,'Value'),1) get_mask_civ1_Callback(hObject, eventdata, handles); end if isequal(get(handles.get_mask_fix1,'Value'),1) get_mask_fix1_Callback(hObject, eventdata, handles); end if isequal(get(handles.get_mask_civ2,'Value'),1) get_mask_civ2_Callback(hObject, eventdata, handles); end if isequal(get(handles.get_mask_fix2,'Value'),1) get_mask_fix2_Callback(hObject, eventdata, handles); end %read names of the .exe file path_uvmat=which('uvmat');% check the path detected for source file uvmat path_UVMAT=fileparts(path_uvmat); %path to UVMAT %fid = fopen(fullfile(path_UVMAT,'PARAM_LINUX.txt'),'r');%open the file with civ_3D binary names xmlfile=fullfile(path_UVMAT,'PARAM.xml'); if exist(xmlfile,'file') t=xmltree(xmlfile); sparam=convert(t); end if isfield(sparam.BatchParam,'Civ3D3CBin') Civ3D3CBin=sparam.BatchParam.Civ3D3CBin; else msgbox_uvmat('ERROR','binary for CIV3D3C not defined in PARAM.xml') return end %choice of batch priority ind_answer=2; % if sge [s,w]=unix('qstat -q civ_3D.q|grep job_| wc -l'); %check the waiting list (command unix) if isequal(s,0) w(end)=[]; str_displ={[w ' jobs in the waiting list'];'Select a priority:'}; str={'urgent';'normal';'low'}; [ind_answer,v] = listdlg('PromptString',str_displ,... 'SelectionMode','single',... 'ListString',str,'ListSize',[200 200],'Name','job priority','InitialValue',3); if isequal(v,0) % to handle Cancel button and figure close, return % a better way should be create end else msgbox_uvmat('ERROR','batch system not available') return end % end %initialize the waitbars set(handles.waitbar_1,'Position',[0.946 0.876 0.03 0.001]) set(handles.waitbar_patch1,'Position',[0.946 0.439 0.03 0.001]) set(handles.waitbar_civ2,'Position',[0.946 0.219 0.03 0.001]) set(handles.waitbar_patch2,'Position',[0.946 0.0 0.03 0.001]) set(handles.BATCH, 'Enable','Off') set(handles.BATCH,'BackgroundColor',[0.831 0.816 0.784]) %get the filename root, nomenclature and numbers filebase=get(handles.displ_filebase,'String'); % for Windows system find the UBC path name if needed if ~isunix & isequal(todo_path(1:2),'\\') & isequal(filebase(2:3),':\') cur_dir=pwd; if ~isequal(cur_dir(2:3),':\') cd(matlabroot); %move to the Matlab root directory if the current Matlab dir does not allow the dos command or is M: end [ss,ww]=dos(['net use ' filebase(1:2)]); if isequal(ss,0) rankpath=findstr(ww,'\\'); if ~isempty(rankpath) wwrest=ww(rankpath:end); rankend=min(find(double(wwrest)==10))-1; filebase=[wwrest(1:rankend) filebase(3:end)]; set(handles.displ_filebase,'String',filebase); end else msgbox_uvmat('ERROR','for BATCH option, UBC file names, beginning by \\, are needed'); set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) return end end browse=get(handles.browse_root,'UserData') ext_ima=browse.ext_ima; nom_type_nc='_i1-i2'; nom_type_ima=browse.nom_type_ima; % nom_type_nc=browse.nom_type_nc; % if isequal(nom_type_ima2,[]),nom_type_ima2='ima_num';end; %default % if isequal(nom_type_nc,[]),nom_type_nc='_i1-i2';end; %default mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; time=get(handles.displ_filebase,'UserData'); %get the set of times [num1_civ1,num2_civ1,num_a_civ1,num_b_civ1,num1_civ2,num2_civ2,num_a_civ2,num_b_civ2]=... find_pair_indices(handles,mode); %determine the pairs of processing file %check dir subdir_civ1=get(handles.subdir_civ1,'String');%subdirectory subdir_civ1 for the netcdf output data subdir_civ2=get(handles.subdir_civ2,'String'); if isequal(subdir_civ1,''),subdir_civ1='A'; end% put default subdir if isequal(subdir_civ2,''),subdir_civ2=subdir_civ1; end% put default subdir currentdir=pwd;%store the current working directory [Path_ima,Name]=fileparts(filebase);%Path of the image files (.civ_3D) if ~exist(Path_ima,'dir') msgbox_uvmat('ERROR',['path to images ' Path_ima ' not found']) return end cd(Path_ima);%move to the directory of the images dircur=pwd; %current working directory m2=''; [erread,message]=fileattrib(Path_ima); if ~isempty(message) & ~isequal(message.UserWrite,1) errordlg(['No writting access to ' Path_ima]) cd(currentdir) return end %test for reference file in fix ref_fix1=get(handles.ref_fix1,'UserData'); ref_fix2=get(handles.ref_fix2,'UserData'); if (~isempty(ref_fix1) & box_test(2)==1)|(~isempty(ref_fix2) & box_test(5)==1) errordlg('reference file not implemented in BATCH mode, use RUN') set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) return end nbfield=length(num1_civ1); nbslice=length(num_a_civ1); %check the existence of the netcdf and image files involved % if box_test(1)==1;%CIV1 activated detect=1; while detect==1 %name a new subdir if one of the netcdf files already exists for ifile=1:nbfield % for j=1:nbslice filename=name_generator(filebase,num1_civ1(ifile),[],'.nc',... '_i1-i2',1,num2_civ1(ifile),[],subdir_civ1);% detect=exist(filename,'file') if detect% if a netcdf file already exists subdir_civ1=[subdir_civ1 '.0']; subdir_civ2=subdir_civ1; break end filecell_nc1(ifile)={filename}; if detect% if a netcdf file already exists break end end %create the new subdir_civ1 if it does not exist if ~exist(fullfile(Path_ima,subdir_civ1),'dir') [m1,m2,m3]=mkdir(subdir_civ1) if ~isequal(m2,'') msgbox(m2);%error message for directory creation end end end %get image names for ifile=1:nbfield filecell_ima1_civ1{ifile}=name_generator(filebase, num1_civ1(ifile),[],'.vol','_i');%first image filecell_ima2_civ1{ifile}=name_generator(filebase, num2_civ1(ifile),[],'.vol','_i'); %second image if ~exist(filecell_ima1_civ1{ifile},'file') msgbox_uvmat('ERROR',[filecell_ima1_civ1{ifile} ' not found']) set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) cd(currentdir) return end if ~exist(filecell_ima2_civ1{ifile},'file') msgbox_uvmat('ERROR',[filecell_ima2_civ1{ifile} ' not found']) set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) cd(currentdir) return end end cd(currentdir);%come back to the initial working directory % if ~isequal(m2,'') % msgbox(m2);%error message for directory creation % end set(handles.subdir_civ1,'String',subdir_civ1);%update the edit box set(handles.subdir_civ2,'String',subdir_civ2);%update the edit box browse.nom_type_nc=nom_type_nc; set(handles.browse_root,'UserData',browse);%update the nomenclature type for uvmat for ifile=1:nbfield i_cmd=0; cmd='#!/bin/bash'; cmd=char({cmd;'#$ -cwd'}); cmd=char({cmd;'hostname && date'}); filename_cmx=cell2mat(filecell_nc1(ifile));%output netcdf file filename_cmx([end-1:end])='cm';%name of cmx file filename_cmx=[filename_cmx 'x']; %CIV1 if box_test(1)==1 %GET civ_3D PARAMETERS: par_civ1=read_param_civ1(handles,cell2mat(filecell_ima1_civ1(1,1))); p1text=[]; [par_civ1.path,resu_file,resu_ext]=fileparts(filecell_nc1{ifile}); par_civ1.volume1=filecell_ima1_civ1{ifile}; par_civ1.volume2=filecell_ima2_civ1{ifile}; par_civ1.nx=str2double(get(handles.npx,'String')); par_civ1.ny=str2double(get(handles.npy,'String'));; par_civ1.nz=par_civ1.gridLimits_Zmax - par_civ1.gridLimits_Zmin; 'TEST' par_civ1 % civAll=get(handles.Experimental,'Value'); % Boolean for new civ excution method % if isequal(civAll,1) civAllxml=struct2xml(par_civ1);% xml contents, all parameters civAllxml=set(civAllxml,1,'name','civ3d3c'); % save(civAllxml) par_civ1_3d_xml=fullfile(par_civ1.path,[resu_file '.xml']);%[par_civ1.path '/test_to_change.xml']; pvalue=num2str((1-ind_answer)*500) save(civAllxml,par_civ1_3d_xml); nb_processor='8'; ['echo /CIVX/bin/MPI/lam-7.1.3_g95/bin/mpirun C ' Civ3D3CBin ' -p ' par_civ1_3d_xml '|qsub -p ' pvalue ' -q lam.q -pe lam_loose ' nb_processor ' -e ' par_civ1_3d_xml '.errors -o ' par_civ1_3d_xml '.log' ] eval ( ['!echo /CIVX/bin/MPI/lam-7.1.3_g95/bin/mpirun C ' Civ3D3CBin ' -p ' par_civ1_3d_xml '|qsub -p ' pvalue ' -q lam.q -pe lam_loose ' nb_processor ' -e ' par_civ1_3d_xml '.errors -o ' par_civ1_3d_xml '.log' ]) end end set(handles.BATCH, 'Enable','On') set(handles.BATCH,'BackgroundColor',[1 0 0]) %save GUI state [Path,Name]=fileparts(filebase); namefig=fullfile(Path,subdir_civ2,Name); detect=1; while detect==1 namefigfull=[namefig '.fig']; hh=dir(namefigfull); if ~isempty(hh) detect=1; namefig=[namefig '.0']; else detect=0; end end saveas(gcbf,namefigfull);%save the interface with name namefigfull %---------------------------------------- %PATCH %--------------------------------------- function cmd_PATCH=RUN_PATCH(filename_nc,nx_patch,ny_patch,rho_patch,subdomain_patch,thresh_value,test_interp) global patch_exe patch_new_exe namelog=[filename_nc([1:end-3]) '_patch.log']; if test_interp==0 cmd_PATCH=[patch_exe ' -f ' filename_nc ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ' -nopt ' subdomain_patch ... ' > ' namelog ' 2>&1'] % redirect standard output to the log file else %nouveau programme patch cmd_PATCH=[patch_new_exe ' -f ' filename_nc ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ... ' -max ' thresh_value ' -nopt ' subdomain_patch ' > ' namelog ' 2>&1']; % redirect standard output to the log file end %---------------------------------------------------- function first_j_Callback(hObject, eventdata, handles) last_j_Callback(hObject, eventdata, handles) %--------------------------------------------------------- % --- Executes on button press in CIV1. function CIV1_Callback(hObject, eventdata, handles) enable_civ1(handles,get(handles.CIV1,'Value')) find_netcpair_civ1(hObject, eventdata, handles); %------------------------------------------------------ % --- Executes on button press in FIX1. function FIX1_Callback(hObject, eventdata, handles) if get(handles.FIX1,'Value')==1 enable_fix1(handles) else desable_fix1(handles) end %---------------------------------------------------------------- % --- Executes on button press in PATCH1. function PATCH1_Callback(hObject, eventdata, handles) if get(handles.PATCH1,'Value')==1 enable_patch1(handles) else desable_patch1(handles) end %---------------------------------------------------------- % --- Executes on button press in CIV2. function CIV2_Callback(hObject, eventdata, handles) state=get(handles.CIV2,'Value'); enable_civ2(handles,state) if state find_netcpair_civ2(hObject, eventdata, handles) end %--------------------------------------------------- % --- Executes on button press in FIX2. function FIX2_Callback(hObject, eventdata, handles) if get(handles.FIX2,'Value')==1 enable_fix2(handles) if get(handles.CIV2,'Value')==0 find_netcpair_civ2(hObject, eventdata, handles) % select the available netcdf files end else desable_fix2(handles) end %------------------------------------------------------- % --- Executes on button press in PATCH2. function PATCH2_Callback(hObject, eventdata, handles) %-------------------------------------------------------- if get(handles.PATCH2,'Value')==1 enable_patch2(handles) if get(handles.CIV2,'Value')==0 find_netcpair_civ2(hObject, eventdata, handles) % select the available netcdf files end else desable_patch2(handles) end %----------------------------------------------------------- function first_i_Callback(hObject, eventdata, handles) %------------------------------------------------------ last_i_Callback(hObject, eventdata, handles) %----------------------------------------------------------- % --- Executes on button press in calcul_search: determine the search range isx,isy %-------------------------------------------------------- function calcul_search_Callback(hObject, eventdata, handles) %determine pair numbers list_pair=get(handles.list_pair_civ1,'String');%get the menu of image pairs index=get(handles.list_pair_civ1,'Value'); displ_num=get(handles.list_pair_civ1,'UserData'); time=get(handles.displ_filebase,'UserData'); %get the set of times pxcm_xy=get(handles.calcul_search,'UserData') pxcmx=pxcm_xy(1); pxcmy=pxcm_xy(2); mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; if isequal (mode, 'series(Di)' ) ref_i=str2num(get(handles.ref_i,'String')); num1=ref_i-floor(index/2);% first image numbers num2=ref_i+ceil(index/2); num_a=1; num_b=1; elseif isequal (mode, 'series(Dj)') num1=1; num2=1; ref_j=str2num(get(handles.ref_j,'String')); num_a=ref_j-floor(index/2);% first image numbers num_b=ref_j+ceil(index/2); elseif isequal(mode,'pair j1-j2') %case of bursts (png_old or png_2D) ref_i=str2num(get(handles.ref_i,'String')); num1=ref_i; num2=ref_i; num_a=displ_num(1,index); num_b=displ_num(2,index); end dt=time(num2,num_b)-time(num1,num_a); ibx=str2num(get(handles.ibx,'String')); iby=str2num(get(handles.iby,'String')); umin=dt*pxcmx*str2num(get(handles.umin,'String')); umax=dt*pxcmx*str2num(get(handles.umax,'String')); vmin=dt*pxcmy*str2num(get(handles.vmin,'String')); vmax=dt*pxcmy*str2num(get(handles.vmax,'String')); shiftx=round((umin+umax)/2); shifty=round((vmin+vmax)/2); isx=(umax+2-shiftx)*2+ibx; isx=2*ceil(isx/2)+1; isy=(vmax+2-shifty)*2+iby; isy=2*ceil(isy/2)+1; set(handles.shiftx,'String',num2str(shiftx)); set(handles.shifty,'String',num2str(shifty)); set(handles.isx,'String',num2str(isx)); set(handles.isy,'String',num2str(isy)); %--------------------------------------------------------- % Executes on carriage return on the subdir civ1 edit window %-------------------------------------------------------- function subdir_civ1_Callback(hObject, eventdata, handles) subdir=get(handles.subdir_civ1,'String'); set(handles.subdir_civ2,'String',subdir); if get(handles.CIV1,'Value')==0 find_netcpair_civ1(hObject, eventdata, handles); %update the list of available pairs from netcdf files in the new directory end %--------------------------------------------------------- % Executes on carriage return on the subdir civ1 edit window %--------------------------------------------------------- function subdir_civ2_Callback(hObject, eventdata, handles) %update the list of available pairs from netcdf files in the new directory if get(handles.CIV2,'Value')==0 & get(handles.CIV1,'Value')==0 & get(handles.FIX1,'Value')==0 & get(handles.PATCH1,'Value')==0 find_netcpair_civ2(hObject, eventdata, handles); end %------------------------------------------------------ % --- Executes on button press in get_mask_civ1. %------------------------------------------------------ function get_mask_civ1_Callback(hObject, eventdata, handles) maskval=get(handles.get_mask_civ1,'Value') if isequal(maskval,0) set(handles.mask_civ1,'String','') else mask_displ='no mask'; %default filebase=get(handles.displ_filebase,'String'); [ nbslice, flag_mask]=get_mask(filebase,handles) if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; end if get(handles.compare,'Value')==1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.displ_filebase2,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles) if isequal(flag_mask_a,0) | ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.get_mask_civ1,'Value',0) set(handles.get_mask_fix1,'Value',0) set(handles.get_mask_civ2,'Value',0) set(handles.get_mask_fix2,'Value',0) else set(handles.get_mask_fix1,'Value',1) set(handles.get_mask_civ2,'Value',1) set(handles.get_mask_fix2,'Value',1) end set(handles.mask_civ1,'String',mask_displ) set(handles.mask_fix1,'String',mask_displ) set(handles.mask_civ2,'String',mask_displ) set(handles.mask_fix2,'String',mask_displ) end %-------------------------------------------------------------- % --- Executes on button press in get_mask_fix1. function get_mask_fix1_Callback(hObject, eventdata, handles) maskval=get(handles.get_mask_fix1,'Value') if isequal(maskval,0) set(handles.mask_fix1,'String','') else mask_displ='no mask'; %default filebase=get(handles.displ_filebase,'String'); [nbslice, flag_mask]=get_mask(filebase,handles) if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; end if get(handles.compare,'Value')==1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.displ_filebase2,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles) if isequal(flag_mask_a,0) | ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.get_mask_fix1,'Value',0) set(handles.get_mask_civ2,'Value',0) set(handles.get_mask_fix2,'Value',0) else set(handles.get_mask_civ2,'Value',1) set(handles.get_mask_fix2,'Value',1) end set(handles.mask_fix1,'String',mask_displ) set(handles.mask_civ2,'String',mask_displ) set(handles.mask_fix2,'String',mask_displ) end %----------------------------------------- % --- Executes on button press in get_mask_civ2. function get_mask_civ2_Callback(hObject, eventdata, handles) maskval=get(handles.get_mask_civ2,'Value') if isequal(maskval,0) set(handles.mask_civ2,'String','') else mask_displ='no mask'; %default filebase=get(handles.displ_filebase,'String'); [nbslice, flag_mask]=get_mask(filebase,handles) if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; end if get(handles.compare,'Value')==1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.displ_filebase2,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles) if isequal(flag_mask_a,0) | ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.get_mask_civ2,'Value',0) set(handles.get_mask_fix2,'Value',0) else set(handles.get_mask_fix2,'Value',1) end set(handles.mask_civ2,'String',mask_displ) set(handles.mask_fix2,'String',mask_displ) end %------------------------------------- % --- Executes on button press in get_mask_fix2. function get_mask_fix2_Callback(hObject, eventdata, handles) maskval=get(handles.get_mask_fix2,'Value') if isequal(maskval,0) set(handles.mask_fix2,'String','') else mask_displ='no mask'; %default filebase=get(handles.displ_filebase,'String'); [nbslice, flag_mask]=get_mask(filebase,handles) if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; end if get(handles.compare,'Value')==1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.displ_filebase2,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles) if isequal(flag_mask_a,0) | ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.get_mask_fix2,'Value',0) end set(handles.mask_fix2,'String',mask_displ) end %--------------------------------------- function [nbslice, flag_mask]=get_mask(filebase,handles) %detect mask files, images with appropriate file base %[filebase '_' xx 'mask'], xx=nbslice %flag_mask=1 indicates detection flag_mask=0;%default nbslice=1; % subdir=get(handles.subdir_civ1,'String'); [Path,Name]=fileparts(filebase) currentdir=pwd; cd(Path);%move in the dir of the root name filebase maskfiles=dir([Name '_*mask_*.png'])%look for mask files cd(currentdir);%come back to the current working directory if isempty(maskfiles) browse=get(handles.browse_root,'UserData'); varargin{1}=''; image_name=name_generator(filebase,1,1,browse.ext_ima,browse.nom_type_ima);%name of an image if exist(image_name,'file') varargin{1}=image_name; end msgbox_uvmat('ERROR','no mask available, use TOOL menu in the uvmat interface to create it') % makemask(varargin); %open the makemask interface else maskname=maskfiles(1).name;% take the first mask file in the list [Path2,Name,ext]=fileparts(maskname); Namedouble=double(Name); val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters ind_mask=findstr('mask',Name); i=ind_mask-1; while val(i)==0 & i>0 i=i-1; end nbslice=str2num(Name(i+1:ind_mask-1)); if ~isequal(nbslice,[]) & Name(i)=='_' flag_mask=1; else errordlg(['bad mask file ' Name ext ' found in ' Path2]) return nbslice=1; end end %------------------------------ function grid_civ1_Callback(hObject, eventdata, handles) % hObject handle to grid_civ1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of grid_civ1 as text % str2double(get(hObject,'String')) returns contents of grid_civ1 as a double %----------------------------------------------------------- % transform numbers to letters %-------------------------------------------- function str=num2stra(num,nom_type); if isequal(nom_type,'png_old') | isequal(nom_type,'netc_old') |isequal(nom_type,'raw_SMD') str=char(96+num); elseif isequal(nom_type,'_i')|isequal(nom_type,'_i1-i2')... |isequal(nom_type,'ima_num')| isequal(nom_type,'avi')| isequal(nom_type,'none') str=''; else str=num2str(num); end %--------------------------------------------------- function mask_civ1_Callback(hObject, eventdata, handles) set(handles.mask_civ1,'UserData',[]) set(handles.mask_civ1,'String','') %---------------------------------------------------- function mask_civ2_Callback(hObject, eventdata, handles) set(handles.mask_civ2,'UserData',[]) set(handles.mask_civ2,'String','') %---------------------------------------------------- function mask_fix1_Callback(hObject, eventdata, handles) set(handles.mask_fix1,'UserData',[]) set(handles.mask_fix1,'String','') %---------------------------------------------------- function mask_fix2_Callback(hObject, eventdata, handles) set(handles.mask_fix2,'UserData',[]) set(handles.mask_fix2,'String','') %-------------------------------------------------------------------------- % --- Executes on button press in list_subdir_civ1. function list_subdir_civ1_Callback(hObject, eventdata, handles) filebase=get(handles.displ_filebase,'String'); dirinput = uigetdir(filebase) set(handles.subdir_civ1,'String',dirinput) set(handles.subdir_civ2,'String',dirinput) displ_filebase_Callback(hObject, eventdata, handles); function rho_civ2_Callback(hObject, eventdata, handles) % hObject handle to rho_civ2 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of rho_civ2 as text % str2double(get(hObject,'String')) returns contents of rho_civ2 as a double %---------------------------------------------- function last_i_Callback(hObject, eventdata, handles) first_i=str2num(get(handles.first_i,'String')); last_i=str2num(get(handles.last_i,'String')); ref_i=ceil((first_i+last_i)/2); set(handles.ref_i,'String', num2str(ref_i)) ref_i_Callback(hObject, eventdata, handles) %------------------------------------------------------- function last_j_Callback(hObject, eventdata, handles) first_j=str2num(get(handles.first_j,'String')); last_j=str2num(get(handles.last_j,'String')); ref_j=ceil((first_j+last_j)/2); set(handles.ref_j,'String', num2str(ref_j)) ref_j_Callback(hObject, eventdata, handles) %-------------------------------------------------------------------------- % --- Executes on button press in browse_gridciv1. function browse_gridciv1_Callback(hObject, eventdata, handles) value=get(handles.browse_gridciv1,'Value'); if value filebase=get(handles.displ_filebase,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.grid', ' (*.grid)'; '*.grid', '.grid files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); filegrid=fullfile(PathName,FileName); if isempty(FileName)|isempty(PathName)|isequal(FileName,0)|~exist(filegrid,'file') set(handles.browse_gridciv1,'Value',0); set(handles.grid_civ1,'string',''); set(handles.dx_civ1,'Visible','on'); set(handles.dy_civ1,'Visible','on'); set(handles.grid_civ2,'string',''); if get(handles.CIV2,'Value') set(handles.dx_civ2,'Visible','on'); set(handles.dy_civ2,'Visible','on'); end else set(handles.grid_civ1,'string',filegrid); set(handles.dx_civ1,'Visible','off'); set(handles.dy_civ1,'Visible','off'); set(handles.grid_civ2,'string',filegrid); set(handles.dx_civ2,'Visible','off'); set(handles.dy_civ2,'Visible','off'); % set(handles.grid_patch1,'string',filegrid); % set(handles.grid_patch2,'string',filegrid); end else set(handles.grid_civ1,'string',''); set(handles.dx_civ1,'Visible','on'); set(handles.dy_civ1,'Visible','on'); set(handles.grid_civ2,'string',''); if get(handles.CIV2,'Value') set(handles.dx_civ2,'Visible','on'); set(handles.dy_civ2,'Visible','on'); end end function pxcmx_Callback(hObject, eventdata, handles) % hObject handle to pxcmx (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of pxcmx as text % str2double(get(hObject,'String')) returns contents of pxcmx as a double function pxcmy_Callback(hObject, eventdata, handles) % hObject handle to pxcmy (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of pxcmy as text % str2double(get(hObject,'String')) returns contents of pxcmy as a double % --- Executes on button press in browse_gridciv2. function browse_gridciv2_Callback(hObject, eventdata, handles) filebase=get(handles.displ_filebase,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.grid', ' (*.grid)'; '*.grid', '.grid files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); filegrid=fullfile(PathName,FileName); set(handles.grid_civ2,'string',filegrid); set(handles.dx_civ2,'String',' '); set(handles.dy_civ2,'String',' '); % set(handles.grid_patch2,'string',filegrid); % --- Executes on button press in get_gridpatch1. function get_gridpatch1_Callback(hObject, eventdata, handles) % hObject handle to get_gridpatch1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) filebase=get(handles.displ_filebase,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.grid', ' (*.grid)'; '*.grid', '.grid files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); filegrid=fullfile(PathName,FileName); set(handles.grid_patch1,'string',filegrid); % set(handles.grid_patch2,'string',filegrid %----------------------------------------------------------------- % --- Executes on button press in get_gridpatch2. function get_gridpatch2_Callback(hObject, eventdata, handles) % hObject handle to get_gridpatch2 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) %---------------------------------------------------------- function enable_civ1(handles,state) if isequal(state,0) state='off'; end if isequal(state,1) state='on'; end if isequal(state,'on') set(handles.frame_civ1,'BackgroundColor',[1 1 0]) set(handles.frame_para_civ1,'BackgroundColor',[1 1 0]) set(handles.frame_grid_civ1,'BackgroundColor',[1 1 0]) else set(handles.frame_civ1,'BackgroundColor',[0.831 0.816 0.784]) set(handles.frame_para_civ1,'BackgroundColor',[0.831 0.816 0.784]) set(handles.frame_grid_civ1,'BackgroundColor',[0.831 0.816 0.784]) end set(handles.ibx,'Visible',state) set(handles.iby,'Visible',state) set(handles.isx,'Visible',state) set(handles.isy,'Visible',state) set(handles.shiftx,'Visible',state) set(handles.shifty,'Visible',state) set(handles.rho,'Visible',state) set(handles.dx_civ1,'Visible',state) set(handles.dy_civ1,'Visible',state) set(handles.calcul_search,'Visible',state) set(handles.u_text,'Visible',state) set(handles.v_text,'Visible',state) set(handles.min,'Visible',state) set(handles.max,'Visible',state) set(handles.umin,'Visible',state) set(handles.umax,'Visible',state) set(handles.vmin,'Visible',state) set(handles.vmax,'Visible',state) set(handles.grid_civ1,'Visible',state) set(handles.mask_civ1,'Visible',state) set(handles.browse_gridciv1,'Visible',state) set(handles.get_mask_civ1,'Visible',state) set(handles.parameters,'Visible',state) set(handles.grid,'Visible',state) set(handles.dx_civ1,'Visible',state) set(handles.dy_civ1,'Visible',state) set(handles.ImaThreshold,'Visible',state) if isequal(state,'off') set(handles.MinIma,'Visible','off') set(handles.MaxIma,'Visible','off') set(handles.ImaThreshold,'Value',0) end set(handles.dx_civ1_title,'Visible',state) set(handles.dy_civ1_title,'Visible',state) set(handles.ImaThreshold_title,'Visible',state) set(handles.ib_title,'Visible',state) set(handles.is_title,'Visible',state) set(handles.shift_title,'Visible',state) set(handles.rho_title,'Visible',state) %---------------------------------------------------------- function enable_fix1(handles) set(handles.frame_fix1,'BackgroundColor',[1 1 0]) set(handles.REMOVE,'Visible','on') set(handles.vec_Fmin2,'Visible','on') set(handles.vec_F2,'Visible','on') set(handles.vec_F3,'Visible','on') set(handles.thresh_vecC,'Visible','on') set(handles.thresh_vecC_title,'Visible','on') set(handles.thresh_vel,'Visible','on') set(handles.thresh_vel_text,'Visible','on') set(handles.mask_fix1,'Visible','on') set(handles.get_mask_fix1,'Visible','on') set(handles.get_ref_fix1,'Visible','on') set(handles.ref_fix1,'Visible','on') set(handles.inf_sup1,'Visible','on') set(handles.field_ref1,'Visible','on') %---------------------------------------------------------- function desable_fix1(handles) set(handles.frame_fix1,'BackgroundColor',[0.831 0.816 0.784]) set(handles.REMOVE,'Visible','off') set(handles.vec_Fmin2,'Visible','off') set(handles.vec_F2,'Visible','off') set(handles.vec_F3,'Visible','off') set(handles.thresh_vecC,'Visible','off') set(handles.thresh_vecC_title,'Visible','off') set(handles.thresh_vel,'Visible','off') set(handles.thresh_vel_text,'Visible','off') set(handles.mask_fix1,'Visible','off') set(handles.get_mask_fix1,'Visible','off') set(handles.get_ref_fix1,'Visible','off') set(handles.ref_fix1,'Visible','off') set(handles.inf_sup1,'Visible','off') set(handles.field_ref1,'Visible','off') %-------------------------------------------------------------- function enable_patch1(handles) global patch_new_exe set(handles.frame_patch1,'BackgroundColor',[1 1 0]) set(handles.rho_patch1,'Visible','on') set(handles.rho_text1,'Visible','on') set(handles.thresh_patch1,'Visible','on') set(handles.thresh_text1,'Visible','on') set(handles.subdomain_patch1,'Visible','on') set(handles.subdomain_text1,'Visible','on') set(handles.nx_patch1,'Visible','on') set(handles.ny_patch1,'Visible','on') set(handles.nx_patch1_title,'Visible','on') set(handles.ny_patch1_title,'Visible','on') if (~isequal(patch_new_exe,[]) & ~isequal(patch_new_exe,[])) set(handles.test_interp,'Visible','on'); end set(handles.get_gridpatch1,'Visible','on') set(handles.grid_patch1,'string','none'); set(handles.grid_patch1,'Visible','on') %-------------------------------------------------------------- function desable_patch1(handles) set(handles.frame_patch1,'BackgroundColor',[0.831 0.816 0.784]) set(handles.rho_patch1,'Visible','off') set(handles.rho_text1,'Visible','off') set(handles.thresh_patch1,'Visible','off') set(handles.thresh_text1,'Visible','off') set(handles.subdomain_patch1,'Visible','off') set(handles.subdomain_text1,'Visible','off') set(handles.nx_patch1,'Visible','off') set(handles.ny_patch1,'Visible','off') set(handles.nx_patch1_title,'Visible','off') set(handles.ny_patch1_title,'Visible','off') set(handles.test_interp,'Visible','off') set(handles.get_gridpatch1,'Visible','off') set(handles.grid_patch1,'Visible','off') %---------------------------------------------------------- function enable_civ2(handles,state) if isequal(state,0) state='off'; end if isequal(state,1) state='on'; end if isequal(state,'on') set(handles.frame_civ2,'BackgroundColor',[1 1 0]) set(handles.frame_para_civ2,'BackgroundColor',[1 1 0]) set(handles.frame_grid_civ2,'BackgroundColor',[1 1 0]) set(handles.frame_subdirciv2,'BackgroundColor',[1 1 0]) else set(handles.frame_civ2,'BackgroundColor',[0.831 0.816 0.784]) set(handles.frame_para_civ2,'BackgroundColor',[0.831 0.816 0.784]) set(handles.frame_grid_civ2,'BackgroundColor',[0.831 0.816 0.784]) set(handles.frame_subdirciv2,'BackgroundColor',[0.831 0.816 0.784]) end set(handles.ibx_civ2,'Visible',state) set(handles.iby_civ2,'Visible',state) set(handles.decimal,'Visible',state) set(handles.deformation,'Visible',state) set(handles.rho_civ2,'Visible',state) set(handles.dx_civ2,'Visible',state) set(handles.dy_civ2,'Visible',state) set(handles.browse_gridciv2,'Visible',state) set(handles.get_mask_civ2,'Visible',state) set(handles.parameters,'Visible',state) set(handles.grid,'Visible',state) set(handles.parameters_text,'Visible',state) set(handles.grid_text,'Visible',state) set(handles.grid_civ2,'Visible',state) set(handles.mask_civ2,'Visible',state) set(handles.dx_civ2_title,'Visible',state) set(handles.dy_civ2_title,'Visible',state) set(handles.ibx_civ2_text,'Visible',state) set(handles.rho_civ2_title,'Visible',state) set(handles.ImaThreshold2,'Visible',state) set(handles.ImaThreshold_title2,'Visible',state) if isequal(state,'off') set(handles.MinIma2,'Visible','off') set(handles.MaxIma2,'Visible','off') set(handles.ImaThreshold2,'Value',0) if isequal(get(handles.FIX2,'Value'),0) & isequal(get(handles.PATCH2,'Value'),0) set(handles.list_pair_civ2,'Visible','off') set(handles.subdir_civ2,'Visible','off') set(handles.subdir_civ2_text,'Visible','off') end else set(handles.list_pair_civ2,'Visible','on') set(handles.subdir_civ2,'Visible','on') set(handles.subdir_civ2_text,'Visible','on') end %---------------------------------------------------------- % function desable_civ2(handles) % set(handles.frame_civ2,'BackgroundColor',[0.831 0.816 0.784]) % set(handles.frame_para_civ2,'BackgroundColor',[0.831 0.816 0.784]) % set(handles.frame_grid_civ2,'BackgroundColor',[0.831 0.816 0.784]) % set(handles.ibx_civ2,'Visible','off') % set(handles.iby_civ2,'Visible','off') % set(handles.decimal,'Visible','off') % set(handles.deformation,'Visible','off') % set(handles.rho_civ2,'Visible','off') % set(handles.dx_civ2,'Visible','off') % set(handles.dy_civ2,'Visible','off') % set(handles.browse_gridciv2,'Visible','off') % set(handles.get_mask_civ2,'Visible','off') % set(handles.parameters,'Visible','off') % set(handles.grid,'Visible','off') % set(handles.grid,'Visible','on') % set(handles.parameters_text,'Visible','off') % set(handles.grid_text,'Visible','off') % set(handles.grid_civ2,'Visible','off') % set(handles.mask_civ2,'Visible','off') % set(handles.dx_civ2_title,'Visible','off') % set(handles.dy_civ2_title,'Visible','off') % set(handles.ibx_civ2_text,'Visible','off') % set(handles.rho_civ2_title,'Visible','off') % set(handles.frame_subdirciv2,'BackgroundColor',[0.831 0.816 0.784]) % if isequal(get(handles.FIX2,'Value'),0) & isequal(get(handles.PATCH2,'Value'),0) % set(handles.list_pair_civ2,'Visible','off') % set(handles.subdir_civ2,'Visible','off') % set(handles.subdir_civ2_text,'Visible','off') % end %---------------------------------------------------------- function enable_fix2(handles) set(handles.frame_fix2,'BackgroundColor',[1 1 0]) set(handles.REMOVE2,'Visible','on') set(handles.vec_Fmin2_2,'Visible','on') set(handles.vec_F4,'Visible','on') set(handles.vec_F3_2,'Visible','on') set(handles.thresh_vec2C,'Visible','on') set(handles.thresh_vec2C_text,'Visible','on') set(handles.thresh_vel2,'Visible','on') set(handles.thresh_vel2_text,'Visible','on') set(handles.mask_fix2,'Visible','on') set(handles.get_mask_fix2,'Visible','on') set(handles.list_pair_civ2,'Visible','on') set(handles.subdir_civ2,'Visible','on') set(handles.subdir_civ2_text,'Visible','on') set(handles.get_ref_fix2,'Visible','on') set(handles.ref_fix2,'Visible','on') set(handles.inf_sup2,'Visible','on') set(handles.field_ref2,'Visible','on') %---------------------------------------------------------- function desable_fix2(handles) set(handles.frame_fix2,'BackgroundColor',[0.831 0.816 0.784]) set(handles.REMOVE2,'Visible','off') set(handles.vec_Fmin2_2,'Visible','off') set(handles.vec_F4,'Visible','off') set(handles.vec_F3_2,'Visible','off') set(handles.thresh_vec2C,'Visible','off') set(handles.thresh_vec2C_text,'Visible','off') set(handles.thresh_vel2,'Visible','off') set(handles.thresh_vel2_text,'Visible','off') set(handles.mask_fix2,'Visible','off') set(handles.get_mask_fix2,'Visible','off') set(handles.get_ref_fix2,'Visible','off') set(handles.ref_fix2,'Visible','off') set(handles.inf_sup2,'Visible','off') set(handles.field_ref2,'Visible','off') if isequal(get(handles.CIV2,'Value'),0) & isequal(get(handles.PATCH2,'Value'),0) set(handles.list_pair_civ2,'Visible','off') set(handles.subdir_civ2,'Visible','off') set(handles.subdir_civ2_text,'Visible','off') end %-------------------------------------------------------------- function enable_patch2(handles) set(handles.frame_patch2,'BackgroundColor',[1 1 0]) set(handles.rho_patch2,'Visible','on') set(handles.rho_text2,'Visible','on') set(handles.thresh_patch2,'Visible','on') set(handles.thresh_text2,'Visible','on') set(handles.subdomain_patch2,'Visible','on') set(handles.subdomain_text2,'Visible','on') set(handles.nx_patch2,'Visible','on') set(handles.ny_patch2,'Visible','on') set(handles.nx_patch2_title,'Visible','on') set(handles.ny_patch2_title,'Visible','on') set(handles.get_gridpatch2,'Visible','on') set(handles.grid_patch2,'Visible','on') set(handles.list_pair_civ2,'Visible','on') set(handles.subdir_civ2,'Visible','on') set(handles.subdir_civ2_text,'Visible','on') %-------------------------------------------------------------- function desable_patch2(handles) set(handles.frame_patch2,'BackgroundColor',[0.831 0.816 0.784]) set(handles.rho_patch2,'Visible','off') set(handles.rho_text2,'Visible','off') set(handles.thresh_patch2,'Visible','off') set(handles.thresh_text2,'Visible','off') set(handles.subdomain_patch2,'Visible','off') set(handles.subdomain_text2,'Visible','off') set(handles.nx_patch2,'Visible','off') set(handles.ny_patch2,'Visible','off') set(handles.nx_patch2_title,'Visible','off') set(handles.ny_patch2_title,'Visible','off') set(handles.get_gridpatch2,'Visible','off') set(handles.grid_patch2,'Visible','off') if isequal(get(handles.CIV2,'Value'),0) & isequal(get(handles.FIX2,'Value'),0) set(handles.list_pair_civ2,'Visible','off') set(handles.subdir_civ2,'Visible','off') set(handles.subdir_civ2_text,'Visible','off') end % --- Executes on button press in test_interp. function test_interp_Callback(hObject, eventdata, handles) %------------------------------------------------ %Read the parameters for civ1 on the interface %-------------------------------------------------- function par=read_param_civ1(handles,file_ima) ibx_val=str2num(get(handles.ibx,'String')); par.correlationBoxesSize_X=num2str(ibx_val); iby_val=str2num(get(handles.iby,'String')); par.correlationBoxesSize_Y=num2str(iby_val); ibz_val=str2num(get(handles.ibz,'String')); par.correlationBoxesSize_Z=num2str(ibz_val); isx=get(handles.isx,'String'); if isempty(str2num(isx)), isx='41'; set(handles.isx,'String','41'), end; %default maxDisplacement_X=floor((str2num(isx)-ibx_val)/2); par.maxDisplacement_X=num2str(maxDisplacement_X); isy=get(handles.isy,'String'); if isempty(str2num(isy)), isy='41'; set(handles.isy,'String','41'), end; %default maxDisplacement_Y=floor((str2num(isy)-iby_val)/2); par.maxDisplacement_Y=num2str(maxDisplacement_Y); isz=get(handles.isz,'String'); if isempty(str2num(isz)), isz='41'; set(handles.isz,'String','41'), end; %default maxDisplacement_Z=floor((str2num(isz)-ibz_val)/2); par.maxDisplacement_Z=num2str(maxDisplacement_Z); % par.rho=get(handles.rho,'String'); par.gridSpacing_X=get(handles.dx_civ1,'String'); par.gridSpacing_Y=get(handles.dy_civ1,'String'); par.gridSpacing_Z=get(handles.dz_civ1,'String'); % Zmin=str2num(get(handles.first_j,'String'))-1; Zmax=str2num(get(handles.npz,'String')); par.gridLimits_Xmin=0; par.gridLimits_Ymin=0; par.gridLimits_Zmin=0; % A=imread(file_ima);%read the first image to get the size %sizim=size(A); par.gridLimits_Xmax=str2double(get(handles.npx,'String'));%num2str(sizim(2)); par.gridLimits_Ymax=str2double(get(handles.npy,'String'));%num2str(sizim(1)); par.gridLimits_Zmax=Zmax; par.grid='grille'; par.grid_division=4; par.hart=0; par.ratioHoverZ=1; % % %---------------------------------------------------------------- % function par=read_param_civ2(handles,file_ima) % par.ibx=get(handles.ibx_civ2,'String'); % par.iby=get(handles.iby_civ2,'String'); % par.rho=get(handles.rho_civ2,'String'); % par.decimal=int2str(get(handles.decimal,'Value')); % par.deformation=int2str(get(handles.deformation,'Value')); % par.dx=get(handles.dx_civ2,'String'); % par.dy=get(handles.dy_civ2,'String'); % if isequal(str2num(par.dx),[]) % if isempty(get(handles.grid_civ2,'String')); % par.dx='0'; %just read by civ_3D program, not used % else % par.dx='20';%default % set(handles.dx_civ2,'String','20'); % end % end % if isequal(str2num(par.dy),[]) % if isempty(get(handles.grid_civ2,'String')); % par.dy='0';%just read by civ_3D program, not used % else % par.dy='20';%default % set(handles.dy_civ2,'String','20'); % end % end % par.pxcmx=get(handles.pxcmx,'String'); % par.pxcmy=get(handles.pxcmy,'String'); % if isempty(str2num(par.pxcmx)) |isempty(str2num(par.pxcmy)) % par.pxcmx='1'; % par.pxcmy='1'; % end % % par.npx=get(handles.pxcmx,'UserData'); % % par.npy=get(handles.pxcmy,'UserData'); % A=imread(file_ima);%read the first image to get the size % sizim=size(A); % par.npx=num2str(sizim(2)); % par.npy=num2str(sizim(1)); % time=get(handles.displ_filebase,'UserData'); %get the set of times % par.gridname=get(handles.grid_civ2,'String'); % par.gridflag='y'; % if isequal(par.gridname,'')| isempty(par.gridname) % par.gridname='nogrid'; % par.gridflag='n'; % end %--------------------------------------------------------- %CIV1 CIV1 CIV1 CIV1 %---------------------------------------------------------- function cmd_CIV1=BATCH_CIV1(filename,namelog,par,handles) %pixels per cm and matrix of the image times, read from the .civ_3D file by uvmat global civ1_exe Civ_exe sge%name of the executable for civ1 calculation %changes : filename_cmx -> filename ( no extension ) if isequal(par.Dt,'0') par.Dt='1' ;%case of 'displacement' mode end textcmx={'############## CMX file';... ['FirstImage ' par.filename_ima_a];... ['LastImage ' par.filename_ima_b];... 'XX' ;... ['Mask ' par.maskflag] ;... ['MaskName ' par.maskname];... ['ImageSize ' par.npx ' ' par.npy];... %VERIFIER CAS GENERAL ? ['CorrelationBoxesSize ' par.ibx ' ' par.iby];... ['SearchBoxeSize ' par.isx ' ' par.isy];... ['RO ' par.rho];... ['GridSpacing ' par.dx ' ' par.dy];... 'XX 1.0';... ['Dt_TO ' par.Dt ' ' par.T0];... ['PixCmXY ' par.pxcmx ' ' par.pxcmy];... 'XX 1';... ['ShiftXY ' par.shiftx ' ' par.shifty];... ['Grid ' par.gridflag];... ['GridName ' par.gridname] ;... 'XX 85';... 'XX 1.0';... 'XX 1.0';... 'Hart 1';... 'DecimalShift 0';... 'Deformation 0';... 'CorrelationMin 0';... 'IntensityMin 0';... 'SeuilImage n';... 'SeuilImageValues 0 4096';... ['ImageToUse ' par.term_a ' ' par.term_b];... % VERIFIER ? 'ImageUsedBefore null null'}; textout=char(textcmx); % timeL1=clock; dlmwrite([filename '.cmx'],textout,''); % timeL2=clock; % timciv1=etime(timeL2,timeL1) if sge cmd_CIV1=[civ1_exe ' -f ' filename '.cmx' ]; % redirect standard output to the log file else cmd_CIV1=[civ1_exe ' -f ' filename_cmx ' > ' namelog ' 2>&1']; % redirect standard output to the log file end if(isunix) [Rootbat,Filebat,extbat]=fileparts(namelog); ncName=fullfile(Rootbat,[ Filebat '.nc']); cmd_CIV1=char({cmd_CIV1 ; ['mv ' namelog ' ' namelog '.civ1.log'];['chmod g+w ' ncName]}); else cmd_CIV1=char({cmd_CIV1 ; ['copy /Y ' namelog ' ' namelog '.civ1.log']}); end %--------------------------------------------------------- %CIV1 Unified %---------------------------------------------------------- function xml_civ1_parameters=BATCH_CIV1_Unified(filename,namelog,par,handles) %pixels per cm and matrix of the image times, read from the .civ_3D file by uvmat global civ1_exe Civ_exe%name of the executable for civ1 calculation civ1.image1=par.filename_ima_a; civ1.image2=par.filename_ima_b; civ1.imageSize_X=par.npx; civ1.imageSize_Y=par.npy; civ1.outputFileName=[filename '.nc']; civ1.correlationBoxesSize_X=par.ibx; civ1.correlationBoxesSize_Y=par.iby; civ1.searchBoxesSize_X=par.isx; civ1.searchBoxesSize_Y=par.isy; civ1.globalShift_X=par.shiftx; civ1.globalShift_Y=par.shifty; civ1.ro=par.rho; civ1.hart='y'; if isequal(par.gridflag,'y') civ1.grid=par.gridname; end civ1.gridSpacing_X=par.dx; civ1.gridSpacing_Y=par.dy; if isequal(par.maskflag,'y') civ1.mask=par.maskname; end civ1.dt=par.Dt; civ1.unit='pixel'; civ1.absolut_time_T0=par.T0; civ1.pixcmx=par.pxcmx; civ1.pixcmy=par.pxcmy; civ1.convectFlow='n'; xml_civ1_parameters=civ1; %--------------------------------------------------------- %CIV2 CIV2 CIV2 CIV2 %---------------------------------------------------------- function cmd_CIV2=BATCH_CIV2(filename_cmx,namelog,par) %pixels per cm and matrix of the image times, read from the .civ_3D file by uvmat global civ2_exe sge%name of the executable for civ1 calculation if isequal(par.Dt,'0') par.Dt='1' ;%case of 'displacement' mode end textcmx={'############## CMX file';... ['FirstImage ' par.filename_ima_a];... ['LastImage ' par.filename_ima_b];... 'XX' ;... ['Mask ' par.maskflag];... ['MaskName ' par.maskname];... ['ImageSize ' par.npx ' ' par.npy];... ['CorrelationBoxesSize ' par.ibx ' ' par.iby];... ['SearchBoxeSize ' par.ibx ' ' par.iby];... ['RO ' par.rho];... ['GridSpacing ' par.dx ' ' par.dy];... 'XX 1.0';... ['Dt_TO ' par.Dt ' ' par.T0];... ['PixCmXY ' par.pxcmx ' ' par.pxcmy];... 'XX 1';... ['ShiftXY 0 0'];... ['Grid ' par.gridflag];... ['GridName ' par.gridname];... 'XX 85';... 'XX 1.0';... 'XX 1.0';... 'Hart 1';... ['DecimalShift ' par.decimal];... ['Deformation ' par.deformation];... 'CorrelationMin 0';... 'IntensityMin 0';... 'SeuilImage n';... 'SeuilImageValues 0 4096';... ['ImageToUse ' par.term_a ' ' par.term_b];... % VERIFIER ? ['ImageUsedBefore ' par.filename_nc1]}; textout=char(textcmx); dlmwrite([filename_cmx '2'] ,textout,''); if sge cmd_CIV2=[civ2_exe ' -f ' filename_cmx ]; % redirect standard output to the log file else cmd_CIV2=[civ2_exe ' -f ' filename_cmx ' > ' namelog ' 2>&1']; % redirect standard output to the log file end % --- Executes on button press in HELP. function HELP_Callback(hObject, eventdata, handles) path_to_uvmat=which ('uvmat');% check the path of uvmat pathelp=fileparts(path_to_uvmat); helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); if isempty(dir(helpfile)), errordlg('Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') else web([helpfile '#civ_3D']) end %---------------------------------------------------------- %--read images and convert them to the uint16 format used for PIV function A=read_image(filename,nom_type,npx,npy,num); %npx, npy are the dimensions needed for the raw SMD images %num is the view number needed for an avi movie if isequal(nom_type,'avi') mov=aviread(filename,num); A=frame2im(mov(1)); A=sum(double(A),3); A=uint16(A); elseif isequal(nom_type,'raw_SMD') [fid,message]=fopen(filename,'r'); B=fread(fid,Inf,'int16',0,'ieee-le');%read 16 bit binary file A=(reshape(B,npx,npy))'; %remplissage ligne par ligne avec une matrice colonne ? transposer(uB) pour avoir une matrice ligne A=uint16(A); fclose(fid); else A=imread(filename); siz=size(A); if length(siz)==3;%color images A=sum(double(A),3); end A=uint16(A); end %---------------------------------------------------------------- %Executes on carriage return on the time interval dt %---------------------------------------------------------------- function dt_Callback(hObject, eventdata, handles) %determine the set of times and possible intervals for CIV_3D % answer=inputdlg('time interval between images?'); dt=(1/1000)*str2num(get(handles.dt,'String')); nbfield=str2num(get(handles.nb_field,'String')); %last image number selected in the processing series time=(dt*[0:nbfield-1])'; % set(handles.incr_i,'UserData',dt);%store the time interval between successive images set(handles.displ_filebase,'UserData',time); %store the set of times for index=1:min(nbfield-1,200) displ_num(1,index)=1; displ_num(2,index)=1; displ_num(3,index)=-floor(index/2); displ_num(4,index)=ceil(index/2); end set(handles.list_pair_civ1,'Value',1); set(handles.list_pair_civ1,'UserData',displ_num); set(handles.list_pair_civ2,'Value',1); %update the list of time intervals find_netcpair_civ1(hObject, eventdata, handles) find_netcpair_civ2(hObject, eventdata, handles) %------------------------------------------------------- function ref_i_Callback(hObject, eventdata, handles) mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; if isequal(get(handles.CIV1,'Value'),0)| isequal(mode,'series(Di)') find_netcpair_civ1(hObject, eventdata, handles);% update the menu of pairs depending on the available netcdf files end if isequal(mode,'series(Di)') | ...% we do patch2 only (get(handles.CIV2,'Value')==0 & get(handles.CIV1,'Value')==0 & get(handles.FIX1,'Value')==0 & get(handles.PATCH1,'Value')==0) find_netcpair_civ2(hObject, eventdata, handles); end %---------------------------------------------------- function ref_j_Callback(hObject, eventdata, handles) mode_list=get(handles.mode,'String'); mode_value=get(handles.mode,'Value'); mode=mode_list{mode_value}; if isequal(get(handles.CIV1,'Value'),0)| isequal(mode,'series(Dj)') find_netcpair_civ1(hObject, eventdata, handles);% update the menu of pairs depending on the available netcdf files end if isequal(mode,'series(Dj)') | ... (get(handles.CIV2,'Value')==0 & get(handles.CIV1,'Value')==0 & get(handles.FIX1,'Value')==0 & get(handles.PATCH1,'Value')==0) find_netcpair_civ2(hObject, eventdata, handles); end %---------------------------------------------------- % --- Executes on button press in compare. function compare_Callback(hObject, eventdata, handles) test=get(handles.compare,'Value'); if test filebase=get(handles.displ_filebase,'String'); browse=get(handles.browse_root,'Userdata'); browse.nom_type_ima1=browse.nom_type_ima; set(handles.browse_root,'UserData',browse); set(handles.displ_filebase2,'Visible','On');%mkes the second file input window visible set(handles.displ_filebase2,'String',filebase); mode_store=get(handles.mode,'String');%get the present 'mode' set(handles.compare,'UserData',mode_store);%store the mode display set(handles.mode,'Value',1) set(handles.mode,'String',{'displacement';'st_pair j1-j2'}) else set(handles.displ_filebase2,'Visible','Off'); set(handles.displ_filebase2,'String',[]); mode_store=get(handles.compare,'UserData'); set(handles.mode,'String',mode_store) set(handles.test_stereo1,'Value',0) set(handles.test_stereo2,'Value',0) end mode_Callback(hObject, eventdata, handles) %----------------------------------------------------------- % --- Executes on button press in get_ref_fix1. function get_ref_fix1_Callback(hObject, eventdata, handles) filebase=get(handles.displ_filebase,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.nc', ' (*.nc)'; '*.nc', 'netcdf files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); fileinput=[PathName FileName]; sizf=size(fileinput); if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end %stop if fileinput not a character string %[filebasesub,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); [Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); %filebase=fullfile(RootPath,RootFile); % [Pth,FileN]=fileparts(filebasesub); % Pth=fileparts(Pth); ref.filebase=fullfile(Path,File); ref.num_a=stra2num(str_a); ref.num_b=stra2num(str_b); ref.num1=str2num(field_count); ref.num2=str2num(str2); browse=[];%initialisation if ~isequal(ref.ext,'.nc') errordlg('the reference file must be in netcdf format (*.nc)') return end % [path,name]=fileparts(ref.filebase); set(handles.ref_fix1,'String',[fullfile(ref.subdir,File) '....nc']); set(handles.ref_fix1,'UserData',ref) menu_field{1}='civ1'; Data=nc2struct(fileinput,[]); if isfield(Data,'patch') & isequal(Data.patch,1) menu_field{2}='filter1'; end if isfield(Data,'civ2') & isequal(Data.civ2,1) menu_field{3}='civ2'; end if isfield(Data,'patch2') & isequal(Data.patch2,1) menu_field{4}='filter2'; end % [cte_detect,vdt,cte_read]=read_netcdf(fileinput,{'patch','civ2','patch2'}); % if isequal(cte_detect(1),1) & isequal(cte_read(1),1) % menu_field{2}='filter1'; % end % if isequal(cte_detect(2),1) & isequal(cte_read(2),1) % menu_field{3}='civ2'; % end % if isequal(cte_detect(3),1) & isequal(cte_read(3),1) % menu_field{4}='filter2'; % end set(handles.field_ref1,'String',menu_field); set(handles.field_ref1,'Value',length(menu_field)); set(handles.inf_sup1,'Value',2); set(handles.thresh_vel,'String','1');%default threshold set(handles.ref_fix1,'Enable','on') %--------------------------------------------------------------- % --- Executes on button press in get_ref_fix2. function get_ref_fix2_Callback(hObject, eventdata, handles) if isequal(get(handles.get_ref_fix2,'Value'),1) filebase=get(handles.displ_filebase,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.nc', ' (*.nc)'; '*.nc', 'netcdf files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); fileinput=[PathName FileName]; sizf=size(fileinput); if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end %stop if fileinput not a character string %[filebasesub,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); [Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); % [Pth,FileN]=fileparts(filebasesub); % Pth=fileparts(Pth); ref.filebase=fullfile(Path,File) ref.num_a=stra2num(str_a); ref.num_b=stra2num(str_b); ref.num1=str2num(field_count); ref.num2=str2num(str2); browse=[];%initialisation if ~isequal(ref.ext,'.nc') errordlg('the reference file must be in netcdf format (*.nc)') return end % [path,name]=fileparts(ref.filebase); set(handles.ref_fix2,'String',[fullfile(ref.subdir,File) '....nc']); set(handles.ref_fix2,'UserData',ref) menu_field{1}='civ1'; % [cte_detect,vdt,cte_read]=read_netcdf(fileinput,{'patch','civ2','patch2'}); Data=nc2struct(fileinput,[]); if isfield(Data,'patch') & isequal(Data.patch,1) menu_field{2}='filter1'; end if isfield(Data,'civ2') & isequal(Data.civ2,1) menu_field{3}='civ2'; end if isfield(Data,'patch2') & isequal(Data.patch2,1) menu_field{4}='filter2'; end % if isequal(cte_detect(1),1) & isequal(cte_read(1),1) % menu_field{2}='filter1'; % end % if isequal(cte_detect(2),1) & isequal(cte_read(2),1) % menu_field{3}='civ2'; % end % if isequal(cte_detect(3),1) & isequal(cte_read(3),1) % menu_field{4}='filter2'; % end set(handles.field_ref2,'String',menu_field); set(handles.field_ref2,'Value',length(menu_field)); set(handles.inf_sup2,'Value',2); set(handles.thresh_vel2,'String','1');%default threshold set(handles.ref_fix2,'Enable','on') set(handles.ref_fix2,'Visible','on') set(handles.field_ref2,'Visible','on') else set(handles.ref_fix2,'Visible','off') set(handles.field_ref2,'Visible','off') end %------------------------------------------------------- function ref_fix1_Callback(hObject, eventdata, handles) set(handles.inf_sup1,'Value',1); set(handles.field_ref1,'Value',1) set(handles.field_ref1,'String',{' '}) set(handles.ref_fix1,'UserData',[]); set(handles.ref_fix1,'String',''); set(handles.thresh_vel1,'String','0'); %------------------------------------------------------ function ref_fix2_Callback(hObject, eventdata, handles) set(handles.inf_sup2,'Value',1); set(handles.field_ref2,'Value',1) set(handles.field_ref2,'String',{' '}) set(handles.ref_fix2,'UserData',[]); set(handles.ref_fix2,'String',''); set(handles.thresh_vel2,'String','0'); %-------------------------------------------------------- % --- Executes on selection change in inf_sup1. function inf_sup1_Callback(hObject, eventdata, handles) %-------------------------------------------------------------------------- % --- Executes on selection change in field_ref. function field_ref_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------- % --- Executes on selection change in field_ref2. function field_ref2_Callback(hObject, eventdata, handles) % ----------------------------------------------------------- % transform letters to numbers %-------------------------------------------- function numres=stra2num(str) numres=double(str)-96; if double(str) >= 48 & double(str) <= 57 % = 1 for numbers numres=str2num(str); end % --- Executes on button press in test_stereo1. function test_stereo1_Callback(hObject, eventdata, handles) if isequal(get(handles.test_stereo1,'Value'),0) set(handles.subdomain_patch1,'Visible','on') set(handles.rho_patch1,'Visible','on') else set(handles.subdomain_patch1,'Visible','off') set(handles.rho_patch1,'Visible','off') end % --- Executes on button press in test_stereo2. function test_stereo2_Callback(hObject, eventdata, handles) if isequal(get(handles.test_stereo2,'Value'),0) set(handles.subdomain_patch2,'Visible','on') set(handles.rho_patch2,'Visible','on') else set(handles.subdomain_patch2,'Visible','off') set(handles.rho_patch2,'Visible','off') end % --- Executes on button press in ImaThreshold. function ImaThreshold_Callback(hObject, eventdata, handles) if isequal(get(handles.ImaThreshold,'Value'),1) set(handles.MinIma,'Visible','on') set(handles.MaxIma,'Visible','on') else set(handles.MinIma,'Visible','off') set(handles.MaxIma,'Visible','off') end % --- Executes on button press in ImaThreshold2. function ImaThreshold2_Callback(hObject, eventdata, handles) if isequal(get(handles.ImaThreshold2,'Value'),1) set(handles.MinIma2,'Visible','on') set(handles.MaxIma2,'Visible','on') else set(handles.MinIma2,'Visible','off') set(handles.MaxIma2,'Visible','off') end % --- Executes on button press in Experimental. function Experimental_Callback(hObject, eventdata, handles) function ibz_Callback(hObject, eventdata, handles) % hObject handle to ibz (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of ibz as text % str2double(get(hObject,'String')) returns contents of ibz as a double % --- Executes during object creation, after setting all properties. function ibz_CreateFcn(hObject, eventdata, handles) % hObject handle to ibz (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function edit74_Callback(hObject, eventdata, handles) % hObject handle to edit74 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit74 as text % str2double(get(hObject,'String')) returns contents of edit74 as a double % --- Executes during object creation, after setting all properties. function edit74_CreateFcn(hObject, eventdata, handles) % hObject handle to edit74 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function dz_civ1_Callback(hObject, eventdata, handles) % hObject handle to dz_civ1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of dz_civ1 as text % str2double(get(hObject,'String')) returns contents of dz_civ1 as a double function edit77_Callback(hObject, eventdata, handles) % hObject handle to edit77 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit77 as text % str2double(get(hObject,'String')) returns contents of edit77 as a double function edit78_Callback(hObject, eventdata, handles) % hObject handle to ref_i (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of ref_i as text % str2double(get(hObject,'String')) returns contents of ref_i as a double function edit79_Callback(hObject, eventdata, handles) % hObject handle to edit79 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit79 as text % str2double(get(hObject,'String')) returns contents of edit79 as a double function npz_Callback(hObject, eventdata, handles) % hObject handle to npz (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of npz as text % str2double(get(hObject,'String')) returns contents of npz as a double function npy_Callback(hObject, eventdata, handles) % hObject handle to npy (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of npy as text % str2double(get(hObject,'String')) returns contents of npy as a double function npx_Callback(hObject, eventdata, handles) % hObject handle to npx (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of npx as text % str2double(get(hObject,'String')) returns contents of npx as a double