1 | %'cluster_command_psmn': creates the command string for launching jobs in the PSMN cluster |
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2 | %------------------------------------------------------------------------ |
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3 | % function cmd=cluster_command_psmn(ListProcess,ActionFullName,DirLog,NbProcess, NbCore,CPUTimeProcess) |
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4 | % |
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5 | %OUTPUT |
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6 | % cmd=system command (char string) to launch jobs |
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7 | %% |
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8 | % |
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9 | %INPUT: |
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10 | % ListProcessFile: name of the file containing the list of processes to perform |
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11 | % ActionFullName: name given to the action (function activated by series) |
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12 | % DirLog: name of the folder used to store the log files from calculations |
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13 | % NbProcess: number of processes in the list, these processed are grouped by the systwm into jobs dipatched to NbCore cores |
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14 | % NbCore: number of computer cores to which the processes are dispatched |
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15 | % CPUTimeProcess: estimated CPU time for an individual process (in min) |
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16 | |
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17 | function cmd=cluster_command_psmn(ListProcessFile, ActionFullName, DirLog, NbProcess, NbCore, CPUTimeProcess) |
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18 | SubmitScriptFile = regexprep(ListProcessFile, '\job_list.txt\>', 'submit_script.sh'); |
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19 | fid_list = fopen(ListProcessFile, 'r'); |
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20 | fid_submit = fopen(SubmitScriptFile, 'w'); |
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21 | i=1; |
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22 | while(true) |
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23 | process = fgets(fid_list); |
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24 | if(process == -1) |
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25 | break |
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26 | end |
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27 | n = numel(process); |
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28 | process = process(1:(n-1)); % on enlÚve le trailing \n |
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29 | LogFile = regexprep(regexprep(process, '0_EXE\>', '0_LOG'), '\.sh\>', '.log'); |
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30 | fwrite(fid_submit, ['qsub -V '... |
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31 | '-e ' LogFile ' '... |
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32 | '-o ' LogFile ' '... |
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33 | '-q piv_debian '... |
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34 | '-N UVmat_' num2str(i) ' '... |
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35 | process char(10)]); |
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36 | i=i+1; |
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37 | end |
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38 | fclose(fid_list); |
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39 | fclose(fid_submit); |
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40 | system(['chmod +x ' SubmitScriptFile]); |
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41 | cmd = SubmitScriptFile; |
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42 | end |
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