source: trunk/src/cluster_command_psmn.m @ 1063

Last change on this file since 1063 was 1051, checked in by sommeria, 3 years ago

psmsn cluster command updated, pb with multimask solved...

File size: 1.8 KB
Line 
1%'cluster_command_psmn': creates the command string for launching jobs in the PSMN cluster
2%------------------------------------------------------------------------
3% function cmd=cluster_command_psmn(ListProcess,ActionFullName,DirLog,NbProcess, NbCore,CPUTimeProcess)
4%
5%OUTPUT
6% cmd=system command (char string) to launch jobs
7%%
8%
9%INPUT:
10% ListProcessFile: name of the file containing the list of processes to perform
11% ActionFullName: name given to the action (function activated by series)
12% DirLog: name of the folder used to store the log files from calculations
13% NbProcess: number of processes in the list, these processed are grouped by the systwm into jobs dipatched to NbCore cores
14% NbCore: number of computer cores to which the processes are dispatched
15% CPUTimeProcess: estimated CPU time for an individual process (in min)
16
17function cmd=cluster_command_psmn(ListProcessFile, ActionFullName, DirLog, NbProcess, NbCore, CPUTimeProcess)
18    SubmitScriptFile = regexprep(ListProcessFile, '\job_list.txt\>', 'submit_script.sh');
19        fid_list = fopen(ListProcessFile, 'r');
20    fid_submit = fopen(SubmitScriptFile, 'w');
21    i=1;
22        while(true)
23                process = fgets(fid_list);
24        if(process == -1)
25                        break
26        end
27        n = numel(process);
28        process = process(1:(n-1)); % on enlÚve le trailing \n
29        LogFile = regexprep(regexprep(process, '0_EXE\>', '0_LOG'), '\.sh\>', '.log');
30        fwrite(fid_submit, ['qsub -V '...
31                            '-e ' LogFile ' '...
32                            '-o ' LogFile ' '...
33                            '-q piv_debian* '...
34                            '-P PIV '...
35                            '-N UVmat_' num2str(i) ' '...
36                            process char(10)]);
37        i=i+1;
38        end
39        fclose(fid_list);
40    fclose(fid_submit);
41    system(['chmod +x ' SubmitScriptFile]);
42    cmd = SubmitScriptFile;
43end
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