source: trunk/src/command_launch_python.m @ 1135

Last change on this file since 1135 was 1135, checked in by sommeria, 6 months ago

fct for python added

File size: 3.0 KB
Line 
1%'command_launch_python': creates the command strings for opening a programme in python with a Linux system('GLNX86','GLNXA64','MACI64')
2%------------------------------------------------------------------------
3% function cmd=command_launch_matlab(filelog,ActionPath,ActionName,inputxml)
4%
5%OUTPUT
6% cmd=set of system commands (char string) to write
7                           
8%
9%INPUT:
10% filelog: name (char string)  of the file to collect the output in the Matlab command window
11% ActionPath:  path to the  programme to launch
12% ActionName: name of the programme to launch
13% inputxml: full name, including path, of the xml input parameter file for the programme ActionName
14% option: ='bacground' or 'cluster' depending on the launching option
15
16function cmd=command_launch_python(filelog,ActionPath,ActionName,inputxml)
17 cmd = ['LD_LIBRARY_PATH=$(echo $LD_LIBRARY_PATH | pyp "l = x.split('':'');...' ...
18     ' l = [s for s in l if ''matlab'' not in s]; print('':''.join(l))") ' ...
19                'python -m ' ActionName ' ' inputxml];
20
21% Matlab case:
22 % ThreadOption='';
23% if strcmp(option,'cluster')
24%     ThreadOption='-singleCompThread';
25%     inputxml={inputxml};% single input parameter file
26% end
27% matlab_ver = ver('MATLAB');
28% matlab_version = matlab_ver.Version;
29% cmd=[...
30%     '#!/bin/bash\n'...
31%     'source /etc/profile\n'...
32%     'module purge\n'...
33%     'module load matlab/' matlab_version '\n'...% CHOICE OF THE SAME MATLAB VERSION AS THE CURRENT MATLAB SESSION (not mandatory)
34%     'time_start=$(date +%%s)\n'...
35%     'matlab -nodisplay -nosplash -nojvm ''' ThreadOption ''' -logfile ''' filelog ''' <<END_MATLAB\n'...%launch the new Matlab session  without display
36%     'addpath(''' path_uvmat ''');\n'...
37%     'addpath(''' ActionPath ''');\n'];
38% for iprocess=1:numel(inputxml)
39%     cmd=[cmd '' ActionName  '(''' inputxml{iprocess} ''');\n'];
40% end
41% cmd=[cmd  'exit\n' 'END_MATLAB\n'];
42%     if strcmp(option,'background')
43%     cmd=[cmd ...
44%     'time_end=$(date +%%s)\n'...
45%     'echo "global time = " $(($time_end - $time_start)) >> ''' filelog '''\n'];
46%     end
47%
48% %% case cluster:
49% % matlab_ver = ver('MATLAB');
50% %                     matlab_version = matlab_ver.Version;
51% %                     cmd=[...
52% %                         '#!/bin/bash\n'...
53% %                         'source /etc/profile\n'...
54% %                         'module purge\n'...
55% %                         'module load matlab/' matlab_version '\n'...% CHOICE OF CURRENT MATLAB VERSION
56% %                         'matlab -nodisplay -nosplash -nojvm -singleCompThread -logfile ''' filelog{iprocess} ''' <<END_MATLAB\n'...% open a new Matlab session without display
57% %                         'addpath(''' path_series ''');\n'...
58% %                         'addpath(''' ActionPath ''');\n'...
59% %                         '' ActionName  '(''' filexml{iprocess} ''');\n'...% launch the Matlab function selected by the GUI 'series'
60% %                         'exit\n'...
61% %                         'END_MATLAB\n'];
62% %                 end
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