1 | %'command_launch_python': creates the command strings for opening a programme in python with a Linux system('GLNX86','GLNXA64','MACI64') |
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2 | %------------------------------------------------------------------------ |
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3 | % function cmd=command_launch_matlab(filelog,ActionPath,ActionName,inputxml) |
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4 | % |
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5 | %OUTPUT |
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6 | % cmd=set of system commands (char string) to write |
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7 | |
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8 | % |
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9 | %INPUT: |
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10 | % filelog: name (char string) of the file to collect the output in the Matlab command window |
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11 | % ActionPath: path to the programme to launch |
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12 | % ActionName: name of the programme to launch |
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13 | % inputxml: full name, including path, of the xml input parameter file for the programme ActionName |
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14 | % option: ='bacground' or 'cluster' depending on the launching option |
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15 | |
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16 | function cmd=command_launch_python(filelog,ActionPath,ActionName,inputxml) |
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17 | cmd = ['LD_LIBRARY_PATH=$(echo $LD_LIBRARY_PATH | pyp "l = x.split('':'');...' ... |
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18 | ' l = [s for s in l if ''matlab'' not in s]; print('':''.join(l))") ' ... |
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19 | 'python -m ' ActionName ' ' inputxml]; |
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20 | |
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21 | % Matlab case: |
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22 | % ThreadOption=''; |
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23 | % if strcmp(option,'cluster') |
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24 | % ThreadOption='-singleCompThread'; |
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25 | % inputxml={inputxml};% single input parameter file |
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26 | % end |
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27 | % matlab_ver = ver('MATLAB'); |
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28 | % matlab_version = matlab_ver.Version; |
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29 | % cmd=[... |
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30 | % '#!/bin/bash\n'... |
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31 | % 'source /etc/profile\n'... |
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32 | % 'module purge\n'... |
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33 | % 'module load matlab/' matlab_version '\n'...% CHOICE OF THE SAME MATLAB VERSION AS THE CURRENT MATLAB SESSION (not mandatory) |
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34 | % 'time_start=$(date +%%s)\n'... |
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35 | % 'matlab -nodisplay -nosplash -nojvm ''' ThreadOption ''' -logfile ''' filelog ''' <<END_MATLAB\n'...%launch the new Matlab session without display |
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36 | % 'addpath(''' path_uvmat ''');\n'... |
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37 | % 'addpath(''' ActionPath ''');\n']; |
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38 | % for iprocess=1:numel(inputxml) |
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39 | % cmd=[cmd '' ActionName '(''' inputxml{iprocess} ''');\n']; |
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40 | % end |
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41 | % cmd=[cmd 'exit\n' 'END_MATLAB\n']; |
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42 | % if strcmp(option,'background') |
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43 | % cmd=[cmd ... |
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44 | % 'time_end=$(date +%%s)\n'... |
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45 | % 'echo "global time = " $(($time_end - $time_start)) >> ''' filelog '''\n']; |
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46 | % end |
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47 | % |
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48 | % %% case cluster: |
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49 | % % matlab_ver = ver('MATLAB'); |
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50 | % % matlab_version = matlab_ver.Version; |
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51 | % % cmd=[... |
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52 | % % '#!/bin/bash\n'... |
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53 | % % 'source /etc/profile\n'... |
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54 | % % 'module purge\n'... |
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55 | % % 'module load matlab/' matlab_version '\n'...% CHOICE OF CURRENT MATLAB VERSION |
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56 | % % 'matlab -nodisplay -nosplash -nojvm -singleCompThread -logfile ''' filelog{iprocess} ''' <<END_MATLAB\n'...% open a new Matlab session without display |
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57 | % % 'addpath(''' path_series ''');\n'... |
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58 | % % 'addpath(''' ActionPath ''');\n'... |
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59 | % % '' ActionName '(''' filexml{iprocess} ''');\n'...% launch the Matlab function selected by the GUI 'series' |
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60 | % % 'exit\n'... |
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61 | % % 'END_MATLAB\n']; |
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62 | % % end |
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63 | |
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64 | |
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