1 | %'datatree_browser': function for scanning directories in a campaign |
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2 | %------------------------------------------------------------------------ |
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3 | % function varargout = series(varargin) |
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4 | % associated with the GUI datatree_browser.fig |
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5 | |
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6 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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7 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. |
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8 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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9 | % This file is part of the toolbox UVMAT. |
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10 | % |
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11 | % UVMAT is free software; you can redistribute it and/or modify |
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12 | % it under the terms of the GNU General Public License as published by |
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13 | % the Free Software Foundation; either version 2 of the License, or |
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14 | % (at your option) any later version. |
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15 | % |
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16 | % UVMAT is distributed in the hope that it will be useful, |
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17 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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19 | % GNU General Public License (file UVMAT/COPYING.txt) for more details. |
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20 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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21 | |
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22 | function varargout = datatree_browser(varargin) |
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23 | |
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24 | % Last Modified by GUIDE v2.5 26-Jul-2012 08:24:26 |
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25 | |
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26 | % Begin initialization code - DO NOT EDIT |
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27 | gui_Singleton = 1; |
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28 | gui_State = struct('gui_Name', mfilename, ... |
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29 | 'gui_Singleton', gui_Singleton, ... |
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30 | 'gui_OpeningFcn', @datatree_browser_OpeningFcn, ... |
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31 | 'gui_OutputFcn', @datatree_browser_OutputFcn, ... |
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32 | 'gui_LayoutFcn', [] , ... |
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33 | 'gui_Callback', []); |
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34 | if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback','once')) |
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35 | gui_State.gui_Callback = str2func(varargin{1}); |
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36 | end |
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37 | |
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38 | if nargout |
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39 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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40 | else |
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41 | gui_mainfcn(gui_State, varargin{:}); |
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42 | end |
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43 | % End initialization code - DO NOT EDIT |
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44 | |
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45 | %------------------------------------------------------------------------ |
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46 | % --- Executes just before datatree_browser is made visible. |
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47 | function datatree_browser_OpeningFcn(hObject, eventdata, handles, projectxml) |
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48 | %------------------------------------------------------------------------ |
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49 | % Choose default command line output for datatree_browser |
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50 | handles.output = 'Cancel'; |
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51 | |
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52 | % Update handles structure |
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53 | guidata(hObject, handles); |
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54 | testCancel=1; |
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55 | testinputstring=0; |
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56 | icontype='quest';%default question icon (text input asked) |
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57 | |
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58 | % Determine the position of the dialog - centered on the screen |
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59 | FigPos=get(0,'DefaultFigurePosition'); |
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60 | OldUnits = get(hObject, 'Units'); |
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61 | set(hObject, 'Units', 'pixels'); |
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62 | OldPos = get(hObject,'Position'); |
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63 | FigWidth = OldPos(3); |
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64 | FigHeight = OldPos(4); |
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65 | ScreenUnits=get(0,'Units'); |
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66 | set(0,'Units','pixels'); |
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67 | ScreenSize=get(0,'ScreenSize'); |
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68 | set(0,'Units',ScreenUnits); |
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69 | |
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70 | FigPos(1)=1/2*(ScreenSize(3)-FigWidth); |
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71 | FigPos(2)=2/3*(ScreenSize(4)-FigHeight); |
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72 | FigPos(3:4)=[FigWidth FigHeight]; |
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73 | set(hObject, 'Position', FigPos); |
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74 | set(hObject, 'Units', OldUnits); |
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75 | |
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76 | % % Show a question icon from dialogicons.mat - variables questIconData and questIconMap |
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77 | % load dialogicons.mat |
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78 | % eval(['IconData=' icontype 'IconData;']) |
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79 | % eval(['IconCMap=' icontype 'IconMap;']) |
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80 | % questIconMap(256,:) = get(handles.figure1, 'Color'); |
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81 | % Img=image(IconData, 'Parent', handles.axes1); |
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82 | % set(handles.figure1, 'Colormap', IconCMap); |
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83 | % set(handles.axes1, ... |
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84 | % 'Visible', 'off', ... |
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85 | % 'YDir' , 'reverse' , ... |
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86 | % 'XLim' , get(Img,'XData'), ... |
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87 | % 'YLim' , get(Img,'YData') ... |
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88 | % ); |
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89 | % if exist('GeometryCalib','var') |
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90 | % DataviewData.GeometryCalib=GeometryCalib; |
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91 | % set(hObject,'UserData',DataviewData) |
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92 | % end |
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93 | % if exist('SubCampaignTst','var') && isequal(SubCampaignTst,'y') |
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94 | % set(handles.SubCampaignTest,'Value',1); |
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95 | % end |
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96 | if ~isempty(regexp(projectxml,'.project.xml$')) |
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97 | if exist(regexprep(projectxml,'.project.xml$','.link'),'dir') |
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98 | |
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99 | set(handles.LinkDir,'String',regexprep(projectxml,'.project.xml$','.link')) |
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100 | XmlContent=xml2struct(projectxml); |
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101 | set(handles.SourceDir,'String',XmlContent.SourceDir) |
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102 | set(handles.UpdateLink,'String','UpdateLink') |
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103 | % datatree_browser(regexprep(fileinput,'.project.xml$','.link')) |
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104 | |
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105 | elseif exist(regexprep(projectxml,'.project.xml$',''),'dir') |
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106 | set(handles.SourceDir,'String',regexprep(projectxml,'.project.xml$','')) |
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107 | set(handles.LinkDir,'Visible','off') |
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108 | set(handles.UpdateLink,'String','CreateLink') |
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109 | end |
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110 | set(handles.OK,'Visible','on') |
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111 | set(handles.Cancel,'Visible','on') |
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112 | set(handles.figure,'WindowStyle','modal')% Make% Make the GUI modal |
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113 | drawnow |
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114 | uiwait(handles.figure); |
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115 | end |
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116 | % if exist('RootDir','var') |
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117 | % set(handles.SourceDir,'String',RootDir); |
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118 | % % set(handles.clean_civ_cmx,'Visible','off') |
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119 | % set(handles.edit_xml,'Visible','off') |
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120 | % set(handles.HELP,'Visible','off') |
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121 | % set(handles.OK,'Visible','on') |
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122 | % set(handles.Cancel,'Visible','on') |
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123 | % set(handles.figure,'WindowStyle','modal')% Make% Make the GUI modal |
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124 | % set(hObject,'Visible','on') |
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125 | % drawnow |
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126 | % %RootDirectory_Callback(hObject, eventdata, handles) |
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127 | % % UIWAIT makes translate_points wait for user response (see UIRESUME) |
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128 | % uiwait(handles.figure); |
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129 | % end |
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130 | |
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131 | %------------------------------------------------------------------------ |
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132 | % --- Outputs from this function are returned to the command line. |
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133 | function varargout = datatree_browser_OutputFcn(hObject, eventdata, handles) |
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134 | %------------------------------------------------------------------------ |
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135 | % Get default command line output from handles structure |
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136 | varargout{1} = handles.output; |
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137 | %delete(handles.figure) |
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138 | |
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139 | %------------------------------------------------------------------------ |
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140 | % --- Executes on button press in UpdateLink. |
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141 | function UpdateLink_Callback(hObject, eventdata, handles) |
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142 | %------------------------------------------------------------------------ |
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143 | InputString=get(handles.UpdateLink,'String') |
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144 | switch InputString |
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145 | case 'CreateLink' |
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146 | CurrentDir=fileparts(get(handles.SourceDir,'String')); |
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147 | if ~exist(CurrentDir,'dir') |
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148 | CurrentDir=''; |
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149 | end |
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150 | SourceDir=uigetdir(CurrentDir,'pick up the source project directory'); %file browser |
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151 | if isequal(SourceDir,0) |
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152 | return |
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153 | else |
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154 | set(handles.SourceDir,'String',SourceDir) |
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155 | end |
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156 | drawnow |
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157 | [SourcePath,ProjectName]=fileparts(SourceDir); |
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158 | MirrorRoot=uigetdir(CurrentDir,'path to the link directory'); %file browser |
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159 | if isempty(MirrorRoot) |
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160 | return |
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161 | else |
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162 | MirrorDir=fullfile(MirrorRoot,[ProjectName '.link']); |
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163 | end |
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164 | if ~exist(MirrorDir,'dir') |
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165 | mkdir(MirrorDir) |
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166 | end |
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167 | MirrorDoc.SourceDir=SourceDir; |
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168 | t=struct2xml(MirrorDoc); |
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169 | set(t,1,'name','DataTree'); |
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170 | save(t,fullfile(MirrorDir,[ProjectName '.xml'])) |
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171 | set(handles.LinkDir,'String',MirrorDir) |
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172 | |
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173 | %update_link(SourceDir,LinkDir) |
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174 | SourceDir_Callback([],[], handles) |
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175 | case 'UpDateLink' |
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176 | % MirrorDir=get(handles.LinkDir,'String'); |
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177 | % menu={'*.xml', ' (*.xml)'; |
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178 | % '*.xml', '.xml files '; ... |
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179 | % '*.*', 'All Files (*.*)'}; |
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180 | % [MirrorXml, PathName] = uigetfile( menu, 'Pick the head xml file in the link directory',MirrorDir); |
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181 | [MirrorXml, PathName]=fileparts(get(handles.LinkDir,'String')); |
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182 | %set(handles.LinkDir,'String',fullfile(PathName,regexprep(MirrorXml,'.xml$','.link'))) |
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183 | LinkDir_Callback(hObject, eventdata, handles) |
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184 | end |
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185 | |
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186 | % RootDirectory_Callback(hObject, eventdata, handles) |
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187 | %------------------------------------------------------------------------ |
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188 | % --- Executes on button press in open_SubCampaign. |
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189 | function UpdateMirror_Callback(hObject, eventdata, handles) |
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190 | %------------------------------------------------------------------------ |
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191 | % MirrorDir=get(handles.LinkDir,'String'); |
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192 | % menu={'*.xml', ' (*.xml)'; |
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193 | % '*.xml', '.xml files '; ... |
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194 | % '*.*', 'All Files (*.*)'}; |
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195 | % [MirrorXml, PathName] = uigetfile( menu, 'Pick the head xml file in the link directory',MirrorDir); |
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196 | % set(handles.LinkDir,'String',fullfile(PathName,regexprep(MirrorXml,'.xml$','.link'))) |
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197 | % MirrorDir_Callback(hObject, eventdata, handles) |
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198 | |
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199 | |
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200 | %------------------------------------------------------------------------ |
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201 | function LinkDir_Callback(hObject, eventdata, handles) |
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202 | %------------------------------------------------------------------------ |
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203 | MirrorDir=get(handles.LinkDir,'String'); |
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204 | [tild,MirrorName]=fileparts(MirrorDir); |
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205 | s=xml2struct(fullfile(MirrorDir,[MirrorName '.xml'])); |
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206 | set(handles.SourceDir,'String',s.SourceDir) |
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207 | SourceDir_Callback([],[], handles) |
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208 | %update_link(s.SourceDir, LinkDir) |
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209 | |
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210 | |
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211 | % %------------------------------------------------------------------------ |
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212 | % function update_link(SourceDir,LinkDir,handles) |
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213 | % %------------------------------------------------------------------------ |
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214 | % SourceDir_Callback([],[], handles) |
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215 | |
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216 | %------------------------------------------------------------------------ |
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217 | function SourceDir_Callback(hObject, eventdata, handles) |
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218 | %------------------------------------------------------------------------ |
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219 | set(handles.SourceDir,'BackgroundColor',[1 1 0]) |
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220 | drawnow |
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221 | SourceDir=get(handles.SourceDir,'String'); |
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222 | MirrorDir=get(handles.LinkDir,'String'); |
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223 | ExpName={''}; |
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224 | if exist(SourceDir,'dir') |
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225 | hdir=dir(SourceDir); %list files and dirs |
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226 | idir=0; |
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227 | for ilist=1:length(hdir) |
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228 | if hdir(ilist).isdir |
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229 | dirname=hdir(ilist).name; |
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230 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') |
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231 | idir=idir+1; |
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232 | ExpName{idir}=hdir(ilist).name; |
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233 | link=fullfile(MirrorDir,ExpName{idir}) |
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234 | if ~exist(link,'dir') |
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235 | mkdir(link) |
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236 | end |
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237 | end |
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238 | % look for the list of 'devices' |
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239 | else |
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240 | %warning for isolated files |
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241 | end |
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242 | end |
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243 | set(handles.ListExperiments,'String',[{'*'};ExpName']) |
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244 | set(handles.ListExperiments,'Value',1) |
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245 | ListExperiments_Callback(hObject, eventdata, handles) |
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246 | else |
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247 | msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) |
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248 | end |
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249 | set(handles.SourceDir,'BackgroundColor',[1 1 1]) |
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250 | |
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251 | |
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252 | %------------------------------------------------------------------------ |
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253 | % --- Executes on selection change in ListExperiments. |
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254 | function ListExperiments_Callback(hObject, eventdata, handles) |
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255 | %------------------------------------------------------------------------ |
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256 | SourcePath=get(handles.SourceDir,'String'); |
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257 | MirrorPath=get(handles.LinkDir,'String'); |
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258 | ListExperiments=get(handles.ListExperiments,'String'); |
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259 | ListDevices={}; |
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260 | list_val=get(handles.ListExperiments,'Value'); |
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261 | if isequal(list_val(1),1) |
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262 | ListExperiments=ListExperiments(2:end); %choose all experiments |
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263 | testList=1; |
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264 | set(handles.ListExperiments,'Value',1) |
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265 | else |
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266 | ListExperiments=ListExperiments(list_val);%choose selected experiments |
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267 | testList=0; |
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268 | end |
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269 | for iexp=1:numel(ListExperiments) |
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270 | hdir=dir(fullfile(SourcePath,ListExperiments{iexp})); %list files and dirs |
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271 | idir=0; |
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272 | for ilist=1:length(hdir) |
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273 | if ~isequal(hdir(ilist).name(1),'.') |
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274 | source=fullfile(SourcePath,ListExperiments{iexp},hdir(ilist).name); |
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275 | link=fullfile(MirrorPath,ListExperiments{iexp},hdir(ilist).name); |
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276 | if ~exist(link) |
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277 | system(['ln -s ' source ' ' link]) |
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278 | end |
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279 | check_list=strcmp(hdir(ilist).name,ListDevices); |
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280 | if isempty(find(check_list)) |
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281 | ListDevices=[ListDevices;hdir(ilist).name]; |
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282 | end |
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283 | end |
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284 | end |
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285 | end |
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286 | set(handles.ListDevices,'String',ListDevices) |
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287 | % if hdir(ilist).isdir |
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288 | % dirname=hdir(ilist).name; |
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289 | % if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') |
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290 | % idir=idir+1; |
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291 | % ExpName{idir}=hdir(ilist).name; |
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292 | % link=fullfile(LinkDir,ExpName{idir}); |
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293 | % if ~exist(link,'dir') |
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294 | % mkdir(link) |
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295 | % end |
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296 | % end |
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297 | % % look for the list of 'devices' |
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298 | % else |
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299 | % %warning for isolated files |
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300 | % end |
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301 | % end |
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302 | % set(handles.ListExperiments,'String',[{'*'};ExpName']) |
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303 | % set(handles.ListExperiments,'Value',1) |
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304 | % ListExperiments_Callback(hObject, eventdata, handles) |
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305 | |
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306 | |
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307 | % set(handles.ListDevices,'Value',1) |
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308 | % set(handles.ListRecords,'Value',1) |
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309 | % set(handles.ListXml,'Value',1) |
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310 | % [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,{},{}); |
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311 | % set(handles.ListRecords,'String',[{'*'};ListRecords']) |
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312 | % set(handles.ListDevices,'String',[{'*'};ListDevices']) |
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313 | % set(handles.ListXml,'String',[{'*'};ListXml']) |
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314 | % if testList |
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315 | % DataviewData=get(handles.figure,'UserData'); |
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316 | % DataviewData.List=List; |
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317 | % set(handles.figure,'UserData',DataviewData) |
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318 | % end |
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319 | % set(handles.CampaignDoc,'Visible','on') |
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320 | % set(handles.edit_xml,'Visible','on') |
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321 | |
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322 | %------------------------------------------------------------------------ |
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323 | % --- Executes on button press in update_headings. |
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324 | function ListDevices_Callback(hObject, eventdata, handles) |
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325 | CurrentPath=get(handles.SourceDir,'String'); |
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326 | ListExperiments=get(handles.ListExperiments,'String'); |
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327 | list_val=get(handles.ListExperiments,'Value'); |
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328 | if isequal(list_val,1) |
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329 | ListExperiments=ListExperiments(2:end); |
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330 | else |
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331 | ListExperiments=ListExperiments(list_val); |
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332 | end |
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333 | set(handles.ListRecords,'Value',1) |
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334 | set(handles.ListXml,'Value',1) |
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335 | ListDevices=get(handles.ListDevices,'String'); |
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336 | list_val=get(handles.ListDevices,'Value'); |
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337 | if isequal(list_val,1) |
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338 | ListDevices=ListDevices(2:end); |
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339 | else |
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340 | ListDevices=ListDevices(list_val); |
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341 | end |
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342 | [ListDevices,ListRecords,ListXml]=ListDir(CurrentPath,ListExperiments,ListDevices,{}); |
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343 | set(handles.ListRecords,'String',[{'*'};ListRecords']) |
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344 | set(handles.ListXml,'String',[{'*'};ListXml']) |
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345 | |
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346 | |
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347 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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348 | |
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349 | |
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350 | |
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351 | %------------------------------------------------------------------------ |
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352 | % --- Executes on selection change in ListRecords. |
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353 | function ListRecords_Callback(hObject, eventdata, handles) |
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354 | Value=get(handles.ListRecords,'Value'); |
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355 | if isequal(Value(1),1) |
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356 | set(handles.ListRecords,'Value',1); |
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357 | end |
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358 | |
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359 | %------------------------------------------------------------------------ |
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360 | % --- Executes on button press in CampaignDoc. |
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361 | function CampaignDoc_Callback(hObject, eventdata, handles) |
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362 | %------------------------------------------------------------------------ |
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363 | answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file') |
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364 | if ~isequal(answer{1},'OK') |
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365 | return |
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366 | end |
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367 | set(handles.ListExperiments,'Value',1) |
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368 | ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories |
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369 | DataviewData=get(handles.figure,'UserData'); |
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370 | List=DataviewData.List; |
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371 | Currentpath=get(handles.SourceDir,'String'); |
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372 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
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373 | Campaign=[Campaign DirExt]; |
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374 | t=xmltree; |
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375 | t=set(t,1,'name','CampaignDoc'); |
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376 | t = attributes(t,'add',1,'source','directory'); |
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377 | SubCampaignTest=get(handles.SubCampaignTest,'Value'); |
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378 | root_uid=1; |
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379 | if SubCampaignTest |
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380 | %TO DO open an exoiting xml doc |
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381 | [t,root_uid]=add(t,1,'element','SubCampaign'); |
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382 | t =attributes(t,'add',root_uid,'DirName',Campaign); |
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383 | end |
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384 | for iexp=1:length(List.Experiment) |
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385 | set(handles.ListExperiments,'Value',iexp+1) |
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386 | drawnow |
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387 | test_mod=0; |
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388 | [t,uid_exp]=add(t,root_uid,'element','Experiment'); |
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389 | t = attributes(t,'add',uid_exp,'i',num2str(iexp)); |
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390 | ExpName=List.Experiment{iexp}.name; |
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391 | t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name); |
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392 | |
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393 | if isfield(List.Experiment{iexp},'Device') |
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394 | for idevice=1:length(List.Experiment{iexp}.Device) |
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395 | [t,uid_device]=add(t,uid_exp,'element','Device'); |
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396 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
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397 | t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name); |
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398 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
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399 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
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400 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; |
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401 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest); |
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402 | if test |
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403 | [List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated'] |
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404 | end |
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405 | if isequal(Title,'ImaDoc') |
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406 | [t,uid_xml]=add(t,uid_device,'element','ImaDoc'); |
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407 | t = attributes(t,'add',uid_xml,'source','file'); |
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408 | [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}); |
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409 | end |
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410 | end |
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411 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
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412 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
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413 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
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414 | [t,uid_record]=add(t,uid_device,'element','Record'); |
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415 | t = attributes(t,'add',uid_record,'DirName',RecordName); |
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416 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
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417 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
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418 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
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419 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest); |
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420 | if test |
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421 | [FileName ' , Heading updated'] |
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422 | end |
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423 | [t,uid_xml]=add(t,uid_record,'element','ImaDoc'); |
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424 | t = attributes(t,'add',uid_xml,'source','file'); |
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425 | [t]=add(t,uid_xml,'chardata',FileName); |
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426 | end |
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427 | end |
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428 | end |
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429 | end |
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430 | end |
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431 | end |
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432 | end |
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433 | set(handles.ListExperiments,'Value',1) |
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434 | outputdir=get(handles.SourceDir,'String'); |
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435 | [path,dirname]=fileparts(outputdir); |
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436 | outputfile=fullfile(outputdir,[dirname '.xml']); |
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437 | %campaigndoc(t); |
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438 | save(t,outputfile) |
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439 | |
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440 | %------------------------------------------------------------------------ |
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441 | % --- Executes on button press in CampaignDoc. |
---|
442 | function edit_xml_Callback(hObject, eventdata, handles) |
---|
443 | %------------------------------------------------------------------------ |
---|
444 | CurrentPath=get(handles.SourceDir,'String'); |
---|
445 | %[CurrentPath,Name,Ext]=fileparts(CurrentDir); |
---|
446 | ListExperiments=get(handles.ListExperiments,'String'); |
---|
447 | Value=get(handles.ListExperiments,'Value'); |
---|
448 | if ~isequal(Value,1) |
---|
449 | ListExperiments=ListExperiments(Value); |
---|
450 | end |
---|
451 | ListDevices=get(handles.ListDevices,'String'); |
---|
452 | Value=get(handles.ListDevices,'Value'); |
---|
453 | if ~isequal(Value,1) |
---|
454 | ListDevices=ListDevices(Value); |
---|
455 | end |
---|
456 | ListRecords=get(handles.ListRecords,'String'); |
---|
457 | Value=get(handles.ListRecords,'Value'); |
---|
458 | if ~isequal(Value,1) |
---|
459 | ListRecords=ListRecords(Value); |
---|
460 | end |
---|
461 | [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); |
---|
462 | ListXml=get(handles.ListXml,'String'); |
---|
463 | Value=get(handles.ListXml,'Value'); |
---|
464 | set(handles.ListXml,'Value',Value(1)); |
---|
465 | if isequal(Value(1),1) |
---|
466 | msgbox_uvmat('ERROR','an xml file needs to be selected') |
---|
467 | return |
---|
468 | else |
---|
469 | XmlName=ListXml{Value(1)}; |
---|
470 | end |
---|
471 | for iexp=1:length(List.Experiment) |
---|
472 | ExpName=List.Experiment{iexp}.name; |
---|
473 | if isfield(List.Experiment{iexp},'Device') |
---|
474 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
475 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
476 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
477 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
---|
478 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} |
---|
479 | if isequal(FileName,XmlName) |
---|
480 | editxml(fullfile(CurrentPath,ExpName,DeviceName,FileName)); |
---|
481 | return |
---|
482 | end |
---|
483 | end |
---|
484 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
485 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
486 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
487 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
488 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
---|
489 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
---|
490 | if isequal(FileName,XmlName) |
---|
491 | editxml(fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName)); |
---|
492 | return |
---|
493 | end |
---|
494 | end |
---|
495 | end |
---|
496 | end |
---|
497 | end |
---|
498 | end |
---|
499 | end |
---|
500 | end |
---|
501 | |
---|
502 | |
---|
503 | |
---|
504 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
505 | % CurrentPath/Campaign: root directory |
---|
506 | function [Title,test_mod]=check_heading(Currentpath,Campaign,Experiment,Device,Record,xmlname,testSubCampaign) |
---|
507 | |
---|
508 | %Shema for Heading: |
---|
509 | % Campaign |
---|
510 | % (SubCampaign) |
---|
511 | % Experiment |
---|
512 | % Device |
---|
513 | % (Record) |
---|
514 | % ImageName |
---|
515 | % DateExp |
---|
516 | % old: %Project: suppressed ( changed to Campaign) |
---|
517 | %Exp: suppressed (changed to experiment) |
---|
518 | %ImaNames: changed to ImageName |
---|
519 | if exist('Record','var') && ~isempty(Record) |
---|
520 | xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,Record,xmlname); |
---|
521 | testrecord=1; |
---|
522 | else |
---|
523 | xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,xmlname); |
---|
524 | testrecord=0; |
---|
525 | end |
---|
526 | if ~exist('testSubCampaign','var') |
---|
527 | testSubCampaign=0; |
---|
528 | end |
---|
529 | if testSubCampaign |
---|
530 | SubCampaign=Campaign; |
---|
531 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
---|
532 | Campaign=[Campaign DirExt]; |
---|
533 | end |
---|
534 | test_mod=0; %test for the modification of the xml file |
---|
535 | t_device=xmltree(xmlfullname); |
---|
536 | Title=get(t_device,1,'name'); |
---|
537 | uid_child=children(t_device,1); |
---|
538 | Heading_old=[]; |
---|
539 | uidheading=0; |
---|
540 | for ilist=1:length(uid_child) |
---|
541 | name=get(t_device,uid_child(ilist),'name'); |
---|
542 | if isequal(name,'Heading') |
---|
543 | uidheading=uid_child(ilist); |
---|
544 | end |
---|
545 | end |
---|
546 | if uidheading |
---|
547 | subt=branch(t_device,uidheading); |
---|
548 | Heading_old=convert(subt); |
---|
549 | else |
---|
550 | return % do not edit xml files without element 'Heading' |
---|
551 | end |
---|
552 | if ~(isfield(Heading_old,'Campaign')&& isequal(Heading_old.Campaign,Campaign)) |
---|
553 | test_mod=1; |
---|
554 | end |
---|
555 | Heading.Campaign=Campaign; |
---|
556 | if testSubCampaign |
---|
557 | if ~(isfield(Heading_old,'SubCampaign')&& isequal(Heading_old.SubCampaign,SubCampaign)) |
---|
558 | test_mod=1; |
---|
559 | end |
---|
560 | Heading.SubCampaign=SubCampaign; |
---|
561 | end |
---|
562 | if ~(isfield(Heading_old,'Experiment')&& isequal(Heading_old.Experiment,Experiment)) |
---|
563 | test_mod=1; |
---|
564 | end |
---|
565 | Heading.Experiment=Experiment; |
---|
566 | if ~(isfield(Heading_old,'Device')&& isequal(Heading_old.Device,Device)) |
---|
567 | test_mod=1; |
---|
568 | end |
---|
569 | Heading.Device=Device; |
---|
570 | if testrecord |
---|
571 | if ~(isfield(Heading_old,'Record')&& isequal(Heading_old.Record,Record)) |
---|
572 | test_mod=1; |
---|
573 | end |
---|
574 | Heading.Record=Record; |
---|
575 | end |
---|
576 | if isfield(Heading_old,'ImaNames') |
---|
577 | test_mod=1; |
---|
578 | if ~isempty(Heading_old.ImaNames) |
---|
579 | Heading.ImageName=Heading_old.ImaNames; |
---|
580 | end |
---|
581 | end |
---|
582 | if isfield(Heading_old,'ImageName')&& ~isempty(Heading_old.ImageName) |
---|
583 | Heading.ImageName=Heading_old.ImageName; |
---|
584 | end |
---|
585 | if isfield(Heading_old,'DateExp')&& ~isempty(Heading_old.DateExp) |
---|
586 | Heading.DateExp=Heading_old.DateExp; |
---|
587 | end |
---|
588 | if test_mod && uidheading |
---|
589 | uid_child=children(t_device,uidheading); |
---|
590 | t_device=delete(t_device,uid_child); |
---|
591 | t_device=struct2xml(Heading,t_device,uidheading); |
---|
592 | backupfile=xmlfullname; |
---|
593 | testexist=2; |
---|
594 | while testexist==2 |
---|
595 | backupfile=[backupfile '~']; |
---|
596 | testexist=exist(backupfile,'file'); |
---|
597 | end |
---|
598 | [success,message]=copyfile(xmlfullname,backupfile);%make backup |
---|
599 | if isequal(success,1) |
---|
600 | delete(xmlfullname) |
---|
601 | else |
---|
602 | return |
---|
603 | end |
---|
604 | save(t_device,xmlfullname) |
---|
605 | end |
---|
606 | |
---|
607 | %------------------------------------------------------------------------ |
---|
608 | % --- Executes on button press in HELP. |
---|
609 | function HELP_Callback(hObject, eventdata, handles) |
---|
610 | path_to_uvmat=which ('uvmat')% check the path of uvmat |
---|
611 | pathelp=fileparts(path_to_uvmat); |
---|
612 | helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); |
---|
613 | if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') |
---|
614 | else |
---|
615 | web([helpfile '#dataview']) |
---|
616 | end |
---|
617 | |
---|
618 | |
---|
619 | |
---|
620 | % --- Executes on selection change in ListXml. |
---|
621 | function ListXml_Callback(hObject, eventdata, handles) |
---|
622 | Value=get(handles.ListXml,'Value'); |
---|
623 | if isequal(Value(1),1) |
---|
624 | set(handles.ListXml,'Value',1); |
---|
625 | end |
---|
626 | |
---|
627 | |
---|
628 | % --- Executes on button press in clean_civ_cmx. |
---|
629 | function clean_civ_cmx_Callback(hObject, eventdata, handles) |
---|
630 | message='this function will delete all files with extensions .log, .bat, .cmx,.cmx2,.errors in the input directory(ies)'; |
---|
631 | answer=msgbox_uvmat('INPUT_Y-N',message); |
---|
632 | if ~isequal(answer,'Yes') |
---|
633 | return |
---|
634 | end |
---|
635 | set(handles.ListExperiments,'Value',1) |
---|
636 | ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories |
---|
637 | DataviewData=get(handles.figure,'UserData') |
---|
638 | List=DataviewData.List; |
---|
639 | Currentpath=get(handles.SourceDir,'String'); |
---|
640 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
---|
641 | Campaign=[Campaign DirExt]; |
---|
642 | SubCampaignTest=get(handles.SubCampaignTest,'Value'); |
---|
643 | nbdelete_tot=0; |
---|
644 | for iexp=1:length(List.Experiment) |
---|
645 | set(handles.ListExperiments,'Value',iexp+1) |
---|
646 | drawnow |
---|
647 | test_mod=0; |
---|
648 | ExpName=List.Experiment{iexp}.name; |
---|
649 | nbdelete=0; |
---|
650 | if isfield(List.Experiment{iexp},'Device') |
---|
651 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
652 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
653 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
654 | currentdir=fullfile(Currentpath,Campaign,ExpName,DeviceName); |
---|
655 | hdir=dir(currentdir); %list files and dirs |
---|
656 | idir=0; |
---|
657 | for ilist=1:length(hdir) |
---|
658 | if hdir(ilist).isdir |
---|
659 | dirname=hdir(ilist).name; |
---|
660 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') |
---|
661 | CivDir=fullfile(currentdir,dirname) |
---|
662 | hCivDir=dir(CivDir); |
---|
663 | for ilist=1:length(hCivDir) |
---|
664 | FileName=hCivDir(ilist).name; |
---|
665 | [dd,ff,Ext]=fileparts(FileName); |
---|
666 | if isequal(Ext,'.log')||isequal(Ext,'.bat')||isequal(Ext,'.cmx')||isequal(Ext,'.cmx2')|| isequal(Ext,'.errors') |
---|
667 | delete(fullfile(CivDir,FileName)) |
---|
668 | nbdelete=nbdelete+1; |
---|
669 | end |
---|
670 | end |
---|
671 | end |
---|
672 | end |
---|
673 | end |
---|
674 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
675 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
676 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
677 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
678 | 'look at subdirectories' |
---|
679 | end |
---|
680 | end |
---|
681 | end |
---|
682 | end |
---|
683 | end |
---|
684 | display([num2str(nbdelete) ' files deleted']) |
---|
685 | nbdelete_tot=nbdelete_tot+nbdelete; |
---|
686 | end |
---|
687 | msgbox_uvmat('CONFIRMATION',['END: ' num2str(nbdelete_tot) ' files deleted by clean_civ_cmx']) |
---|
688 | set(handles.ListExperiments,'Value',1) |
---|
689 | |
---|
690 | |
---|
691 | % --- Executes on button press in OK. |
---|
692 | function OK_Callback(hObject, eventdata, handles) |
---|
693 | %------------------------------------------------------------------------ |
---|
694 | CurrentPath=get(handles.SourceDir,'String'); |
---|
695 | ListExperiments=get(handles.ListExperiments,'String'); |
---|
696 | IndicesExp=get(handles.ListExperiments,'Value'); |
---|
697 | if ~isequal(IndicesExp,1) |
---|
698 | ListExperiments=ListExperiments(IndicesExp); |
---|
699 | end |
---|
700 | ListDevices=get(handles.ListDevices,'String'); |
---|
701 | Value=get(handles.ListDevices,'Value'); |
---|
702 | if isequal(Value,1) |
---|
703 | msgbox_uvmat('ERROR','manually select in the GUI dataview the device being calibrated') |
---|
704 | return |
---|
705 | else |
---|
706 | ListDevices=ListDevices(Value); |
---|
707 | end |
---|
708 | ListRecords=get(handles.ListRecords,'String'); |
---|
709 | Value=get(handles.ListRecords,'Value'); |
---|
710 | if ~isequal(Value,1) |
---|
711 | ListRecords=ListRecords(Value); |
---|
712 | end |
---|
713 | [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); |
---|
714 | ListXml=get(handles.ListXml,'String'); |
---|
715 | Value=get(handles.ListXml,'Value'); |
---|
716 | if isequal(Value,1) |
---|
717 | msgbox_uvmat('ERROR','you need to select in the GUI dataview the xml files to edit') |
---|
718 | return |
---|
719 | else |
---|
720 | ListXml=ListXml(Value); |
---|
721 | end |
---|
722 | |
---|
723 | %update all the selected xml files |
---|
724 | DataviewData=get(handles.figure,'UserData'); |
---|
725 | % answer=msgbox_uvmat('INPUT_Y-N',[num2str(length(Value)) ' xml files for device ' ListDevices{1} ' will be refreshed with ' ... |
---|
726 | % DataviewData.GeometryCalib.CalibrationType ' calibration data']) |
---|
727 | % if ~isequal(answer,'Yes') |
---|
728 | % return |
---|
729 | % end |
---|
730 | %List.Experiment{1}.Device{1} |
---|
731 | %List.Experiment{2}.Device{1} |
---|
732 | for iexp=1:length(List.Experiment) |
---|
733 | ExpName=List.Experiment{iexp}.name; |
---|
734 | set(handles.ListExperiments,'Value',IndicesExp(iexp)); |
---|
735 | if isfield(List.Experiment{iexp},'Device') |
---|
736 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
737 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
738 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
739 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
---|
740 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; |
---|
741 | for ilistxml=1:length(ListXml) |
---|
742 | if isequal(FileName,ListXml{ilistxml}) |
---|
743 | set(handles.ListXml,'Value',Value(ilistxml)) |
---|
744 | drawnow |
---|
745 | xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,FileName); |
---|
746 | update_imadoc(DataviewData.GeometryCalib,xmlfullname) |
---|
747 | display([xmlfullname ' updated']) |
---|
748 | break |
---|
749 | end |
---|
750 | end |
---|
751 | end |
---|
752 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
753 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
754 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
755 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
756 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
---|
757 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
---|
758 | for ilistxml=1:length(ListXml) |
---|
759 | if isequal(FileName,ListXml{ilistxml}) |
---|
760 | set(handles.ListXml,'Value',Value(ilistxml)) |
---|
761 | drawnow |
---|
762 | xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName); |
---|
763 | update_imadoc(DataviewData.GeometryCalib,xmlfullname) |
---|
764 | display([xmlfullname ' updated']) |
---|
765 | break |
---|
766 | end |
---|
767 | end |
---|
768 | end |
---|
769 | end |
---|
770 | end |
---|
771 | end |
---|
772 | end |
---|
773 | end |
---|
774 | end |
---|
775 | set(handles.ListXml,'Value',Value) |
---|
776 | % |
---|
777 | % |
---|
778 | % |
---|
779 | % |
---|
780 | % |
---|
781 | % |
---|
782 | % |
---|
783 | % CurrentPath=get(handles.SourceDir,'String');%= get(hObject,'String'); |
---|
784 | % ListExperiments=get(handles.ListExperiments,'String'); |
---|
785 | % Value=get(handles.ListExperiments,'Value'); |
---|
786 | % if ~isequal(Value,1) |
---|
787 | % ListExperiments=ListExperiments(Value); |
---|
788 | % end |
---|
789 | % ListDevices=get(handles.ListDevices,'String'); |
---|
790 | % Value=get(handles.ListDevices,'Value'); |
---|
791 | % if isequal(Value,1) |
---|
792 | % msgbox_uvmat('ERROR','manually select in the GUI datatree_browser the device being calibrated') |
---|
793 | % return |
---|
794 | % else |
---|
795 | % ListDevices=ListDevices(Value); |
---|
796 | % end |
---|
797 | % ListRecords=get(handles.ListRecords,'String'); |
---|
798 | % Value=get(handles.ListRecords,'Value'); |
---|
799 | % if ~isequal(Value,1) |
---|
800 | % ListRecords=ListRecords(Value); |
---|
801 | % end |
---|
802 | % [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); |
---|
803 | % ListXml=get(handles.ListXml,'String'); |
---|
804 | % Value=get(handles.ListXml,'Value'); |
---|
805 | % if isequal(Value,1) |
---|
806 | % msgbox_uvmat('ERROR','you need to select in the GUI datatree_browser the xml files to edit') |
---|
807 | % return |
---|
808 | % else |
---|
809 | % ListXml=ListXml(Value); |
---|
810 | % end |
---|
811 | % handles.output.CurrentPath=CurrentPath; |
---|
812 | % handles.output.ListExperiments=ListExperiments; |
---|
813 | % handles.output.ListDevices=ListDevices; |
---|
814 | % handles.output.ListRecords=ListRecords; |
---|
815 | % handles.output.ListXml=ListXml; |
---|
816 | % handles.output.List=List; |
---|
817 | handles.output ='OK, Calibration replicated'; |
---|
818 | guidata(hObject, handles);% Update handles structure |
---|
819 | uiresume(handles.figure); |
---|
820 | |
---|
821 | % --- Executes on button press in Cancel. |
---|
822 | function Cancel_Callback(hObject, eventdata, handles) |
---|
823 | handles.output = get(hObject,'String'); |
---|
824 | guidata(hObject, handles); % Update handles structure |
---|
825 | % Use UIRESUME instead of delete because the OutputFcn needs |
---|
826 | uiresume(handles.figure); |
---|
827 | |
---|
828 | % --- Executes when user attempts to close figure. |
---|
829 | function figure_CloseRequestFcn(hObject, eventdata, handles) |
---|
830 | % if isequal(get(handles.figure, 'waitstatus'), 'waiting') |
---|
831 | % % The GUI is still in UIWAIT, us UIRESUME |
---|
832 | % uiresume(handles.figure); |
---|
833 | % else |
---|
834 | % % The GUI is no longer waiting, just close it |
---|
835 | % delete(handles.figure); |
---|
836 | % end |
---|
837 | |
---|
838 | % --- Executes on key press over figure1 with no controls selected. |
---|
839 | function figure_KeyPressFcn(hObject, eventdata, handles) |
---|
840 | % Check for "enter" or "escape" |
---|
841 | if isequal(get(hObject,'CurrentKey'),'escape') |
---|
842 | % User said no by hitting escape |
---|
843 | handles.output = 'Cancel'; |
---|
844 | |
---|
845 | % Update handles structure |
---|
846 | guidata(hObject, handles); |
---|
847 | |
---|
848 | uiresume(handles.figure); |
---|
849 | end |
---|
850 | if isequal(get(hObject,'CurrentKey'),'return') |
---|
851 | uiresume(handles.figure); |
---|
852 | end |
---|