source: trunk/src/datatree_browser.m @ 525

%'datatree_browser': function for scanning directories in a campaign 
%------------------------------------------------------------------------
% function varargout = series(varargin)
% associated with the GUI datatree_browser.fig

%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
%  Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org.
%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
%     This file is part of the toolbox UVMAT.
% 
%     UVMAT is free software; you can redistribute it and/or modify
%     it under the terms of the GNU General Public License as published by
%     the Free Software Foundation; either version 2 of the License, or
%     (at your option) any later version.
% 
%     UVMAT is distributed in the hope that it will be useful,
%     but WITHOUT ANY WARRANTY; without even the implied warranty of
%     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
%     GNU General Public License (file UVMAT/COPYING.txt) for more details.
%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

function varargout = datatree_browser(varargin)

% Last Modified by GUIDE v2.5 29-Jul-2012 08:49:20

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
                   'gui_Singleton',  gui_Singleton, ...
                   'gui_OpeningFcn', @datatree_browser_OpeningFcn, ...
                   'gui_OutputFcn',  @datatree_browser_OutputFcn, ...
                   'gui_LayoutFcn',  [] , ...
                   'gui_Callback',   []);
if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback','once'))              
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT

%------------------------------------------------------------------------
% --- Executes just before datatree_browser is made visible.
function datatree_browser_OpeningFcn(hObject, eventdata, handles, InputName)
%------------------------------------------------------------------------
% Choose default command line output for datatree_browser
handles.output = 'Cancel';

% Update handles structure
guidata(hObject, handles);
testCancel=1;
testinputstring=0;
icontype='quest';%default question icon (text input asked)

% Determine the position of the dialog - centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);

FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);

if exist('InputName','var')
    if isdir(InputName)% opening by uvmat/MenuSetProject
        set(handles.SourceDir,'String',InputName)% the input directory is considered as a project
        set(handles.LinkDir,'Visible','off')
        set(handles.UpdateLink,'String','create_link')
        set(handles.MarkupDir,'Visible','on')
        
    else% opening by uvmat/Open
        InputDir=regexprep(InputName,'.xml$','');
        if exist(InputDir,'dir')
            s=xml2struct(InputName);
            if isfield(s,'SourceDir')
                set(handles.SourceDir,'String',s.SourceDir)
                set(handles.LinkDir,'String',InputDir)
                set(handles.LinkDir,'Visible','on')
            else
                set(handles.SourceDir,'String',InputDir)
                set(handles.LinkDir,'Visible','off')
                set(handles.MarkupDir,'String','CreateLink')
            end
        end      
    end
    FillExperiments(handles)
    set(handles.OK,'Visible','on')
    drawnow
end


%------------------------------------------------------------------------
% --- Outputs from this function are returned to the command line.
function varargout = datatree_browser_OutputFcn(hObject, eventdata, handles)
%------------------------------------------------------------------------
% Get default command line output from handles structure
varargout{1} = handles.output;
%delete(handles.datatree_browser)

%------------------------------------------------------------------------
% --- Executes on button press in MarkupDir: create a xml file to mark SourceDir as project source
function MarkupDir_Callback(hObject, eventdata, handles)
%------------------------------------------------------------------------
SourceDir=get(handles.SourceDir,'String');
t=xmltree;
t=set(t,1,'name','Project');
try
save(t,[SourceDir '.xml'])
catch ME
    msgbox_uvmat('ERROR',ME.message)
end

%------------------------------------------------------------------------
% --- Executes on button press in UpdateLink: create a link dir or update it if it exists
function UpdateLink_Callback(hObject, eventdata, handles)
%------------------------------------------------------------------------
[SourcePath,ProjectName]=fileparts(get(handles.SourceDir,'String'));
LinkDir=get(handles.LinkDir,'String');
if isempty(LinkDir)||strcmp(get(handles.LinkDir,'Visible'),'off')
    LinkRoot=uigetdir(LinkDir,'pick up the path to the link directory'); %file browser
    if isempty(LinkRoot),return,end
    LinkDir=fullfile(LinkRoot,[ProjectName '.link']);
    set(handles.LinkDir,'Visible','on')
    set(handles.LinkDir,'String',LinkDir)
end

if ~exist(LinkDir,'dir')
    try
        mkdir(LinkDir)
    catch ME
        msgbox_uvmat('ERROR',ME.message)
    end
end
LinkDirXml=fullfile(fileparts(LinkDir),[ProjectName '.link.xml']);
if ~exist(LinkDirXml,'file')
    LinkDoc.SourceDir=get(handles.SourceDir,'String');
    t=struct2xml(LinkDoc);
    t=set(t,1,'name','Project');
    save(t,LinkDirXml)
    set(handles.UpdateLink,'String','update_link')
end

FillExperiments(handles)

%------------------------------------------------------------------------
% --- Fill the column 'Experiments' with the list of detected directries
function FillExperiments(handles)
%------------------------------------------------------------------------    
SourceDir=get(handles.SourceDir,'String');
LinkDir='';
if strcmp(get(handles.LinkDir,'Visible'),'on')
    LinkDir=get(handles.LinkDir,'String');
end

hdir=dir(SourceDir); %list files and dirs
idir=0;
ExpName=cell(length(hdir),1);
for ilist=1:length(hdir)
    if hdir(ilist).isdir
        dirname=hdir(ilist).name;
        if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')% do not list directories beginning by '0'
            idir=idir+1;
            ExpName{idir}=hdir(ilist).name;
            if ~isempty(LinkDir)
                link=fullfile(LinkDir,ExpName{idir});
                if ~exist(link,'dir')
                    mkdir(link)% create the directory containing links
                end
            end
        end
    end
end
set(handles.ListExperiments,'String',[{'*'};ExpName(1:idir)])
set(handles.ListExperiments,'Value',1)
ListExperiments_Callback([],[], handles)


%------------------------------------------------------------------------
% --- Executes on selection change in ListExperiments.
 function ListExperiments_Callback(hObject,eventdata,handles)
%------------------------------------------------------------------------
SourcePath=get(handles.SourceDir,'String');
MirrorPath='';
if strcmp(get(handles.LinkDir,'Visible'),'on')
    MirrorPath=get(handles.LinkDir,'String');
end
ListExperiments=get(handles.ListExperiments,'String');
if isequal(get(handles.ListExperiments,'Value'),1)
    ListExperiments=ListExperiments(2:end); %choose all experiments if the first line '*' has been selected
else
    ListExperiments=ListExperiments(get(handles.ListExperiments,'Value'));
end
ListDevices={};

%% loop on the list of selected experiments
for iexp=1:numel(ListExperiments)
    
    % update the directory of the sources and update the links in the case of a link dir
    hdir=dir(fullfile(SourcePath,ListExperiments{iexp})); %list files and folders in the source
    for ilist=1:length(hdir)
        Device=hdir(ilist).name;
        if ~isequal(Device(1),'.')
            if ~isempty(MirrorPath)% we list the links to the data directories of files
                link=fullfile(MirrorPath,ListExperiments{iexp},Device);
                if ~exist(link)% create a link if it does not exist
                    source=fullfile(SourcePath,ListExperiments{iexp},Device);
                    system(['ln -s ' source ' ' link])%TODO translate for DOS
                end
                Device=['@' Device];
            end
            if hdir(ilist).isdir
                Device=[Device '/'];
            end
            check_list=strcmp(Device,ListDevices);
            if isempty(find(check_list))
                ListDevices=[ListDevices;Device];
            end
        end
    end
    
    % check for dir and files in the link dir which do not exist in the source dir
    if ~isempty(MirrorPath)
        hdir=dir(fullfile(MirrorPath,ListExperiments{iexp})); %list files and folders in the link dir
        for ilist=1:length(hdir)
            Device=hdir(ilist).name;
            if ~isequal(Device(1),'.')
                if hdir(ilist).isdir
                    Device=[Device '/'];
                end
                check_list=strcmp(Device,ListDevices) | strcmp(['@' Device],ListDevices);
                if isempty(find(check_list))
                    ListDevices=[ListDevices;Device];
                end
            end
        end
    end
end

%% display the updated list, keeping track of the previously selected item
PreviousList=get(handles.ListDevices,'String');
NewValue=[];
if ~isempty(PreviousList)&&iscell(PreviousList)
    PreviousDevice=PreviousList{get(handles.ListDevices,'Value')};
    NewValue=find(strcmp(PreviousDevice,ListDevices));
end
if isempty(NewValue)
    NewValue=1;
end
set(handles.ListDevices,'Value',NewValue)
set(handles.ListDevices,'String',ListDevices)


%------------------------------------------------------------------------
% --- Executes on selection in column ListDevices
function ListDevices_Callback(hObject, eventdata, handles)
%------------------------------------------------------------------------    
list_val=get(handles.ListExperiments,'Value');
if isequal(list_val,1) || numel(list_val)~=1
    msgbox_uvmat('ERROR','select a single experiment in the column ''Experiments''')
    return
end
ListExperiments=get(handles.ListExperiments,'String');
Experiment=ListExperiments{list_val};
RootPath='';
if strcmp(get(handles.LinkDir,'Visible'),'on')
    RootPath=get(handles.LinkDir,'String');
end
if isempty(RootPath)
RootPath=get(handles.SourceDir,'String');
end
ListDevices=get(handles.ListDevices,'String');
Device=ListDevices{get(handles.ListDevices,'Value')};
Device=regexprep(Device,'^@','');

%% open the selected file
% case of a directory, open a file inside
if strcmp(Device(end),'/')
    DataDir=fullfile(RootPath,Experiment,Device(1:end-1));
    DirList=dir(DataDir);
    for ilist=1:numel(DirList)
        if ~DirList(ilist).isdir
            [tild,tild,FileExt]=fileparts(DirList(ilist).name);
            FileExt=regexprep(FileExt,'^.','');
            if ~isempty(FileExt) && (~isempty(imformats(FileExt))||strcmp(lower(FileExt),'avi')||strcmp(lower(FileExt),'nc'))
                uvmat(fullfile(DataDir,DirList(ilist).name))
                return
            end
        end
    end
    % open browser if no valid input file has been detected
    [FileName, PathName] = uigetfile( ...
            { '*.*', 'All Files (*.*)'}, ...
            'Pick a mask file *.png',DataDir);
    if ~isempty(FileName)
        uvmat(fullfile(PathName,FileName));
        return
    end
else %case of a file
    uvmat(fullfile(RootPath,Experiment,Device))
    return
end



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%



% %------------------------------------------------------------------------
% % --- Executes on selection change in ListRecords.
% function ListRecords_Callback(hObject, eventdata, handles)
% Value=get(handles.ListRecords,'Value');
% if isequal(Value(1),1)
%     set(handles.ListRecords,'Value',1);
% end

% %------------------------------------------------------------------------
% % --- Executes on button press in CampaignDoc.
% function CampaignDoc_Callback(hObject, eventdata, handles)
% %------------------------------------------------------------------------   
% answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file')
% if ~isequal(answer{1},'OK')
%     return
% end
% set(handles.ListExperiments,'Value',1)
% ListExperiments_Callback(handles)%update the overview of the experiment directories
% DataviewData=get(handles.datatree_browser,'UserData');
% List=DataviewData.List;
% Currentpath=get(handles.SourceDir,'String');
% [Currentpath,Campaign,DirExt]=fileparts(Currentpath);
% Campaign=[Campaign DirExt];
% t=xmltree;
% t=set(t,1,'name','CampaignDoc');
% t = attributes(t,'add',1,'source','directory');
% SubCampaignTest=get(handles.SubCampaignTest,'Value');
% root_uid=1;
% if SubCampaignTest
%     %TO DO open an exoiting xml doc
%     [t,root_uid]=add(t,1,'element','SubCampaign');
%     t =attributes(t,'add',root_uid,'DirName',Campaign);
% end
% for iexp=1:length(List.Experiment)
%     set(handles.ListExperiments,'Value',iexp+1)
%     drawnow
%     test_mod=0;
%     [t,uid_exp]=add(t,root_uid,'element','Experiment');
%     t = attributes(t,'add',uid_exp,'i',num2str(iexp));
%     ExpName=List.Experiment{iexp}.name;
%     t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name);
%    
%     if isfield(List.Experiment{iexp},'Device')
%         for idevice=1:length(List.Experiment{iexp}.Device)
%             [t,uid_device]=add(t,uid_exp,'element','Device');
%             DeviceName=List.Experiment{iexp}.Device{idevice}.name;
%             t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name);       
%             if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
%                 for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
%                     FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml};
%                     [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest);
%                     if test
%                         [List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated']
%                     end
%                     if isequal(Title,'ImaDoc')
%                         [t,uid_xml]=add(t,uid_device,'element','ImaDoc');
%                         t = attributes(t,'add',uid_xml,'source','file');
%                         [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml});                    
%                     end
%                 end
%              elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
%                 for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
%                     RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
%                     [t,uid_record]=add(t,uid_device,'element','Record');
%                     t = attributes(t,'add',uid_record,'DirName',RecordName);
%                     if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
%                         for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
%                             FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
%                             [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest);
%                             if test
%                                 [FileName ' , Heading updated']
%                             end
%                             [t,uid_xml]=add(t,uid_record,'element','ImaDoc');
%                             t = attributes(t,'add',uid_xml,'source','file');
%                             [t]=add(t,uid_xml,'chardata',FileName);
%                         end
%                     end
%                 end
%             end
%         end
%     end
% end
% set(handles.ListExperiments,'Value',1)
% outputdir=get(handles.SourceDir,'String');
% [path,dirname]=fileparts(outputdir);
% outputfile=fullfile(outputdir,[dirname '.xml']);
% %campaigndoc(t);
% save(t,outputfile)
% 
% %------------------------------------------------------------------------
% % --- Executes on button press in CampaignDoc.
% function edit_xml_Callback(hObject, eventdata, handles)
% %------------------------------------------------------------------------
% CurrentPath=get(handles.SourceDir,'String');
% %[CurrentPath,Name,Ext]=fileparts(CurrentDir);
% ListExperiments=get(handles.ListExperiments,'String');
% Value=get(handles.ListExperiments,'Value');
% if ~isequal(Value,1)
%     ListExperiments=ListExperiments(Value);
% end
% ListDevices=get(handles.ListDevices,'String');
% Value=get(handles.ListDevices,'Value');
% if ~isequal(Value,1)
%     ListDevices=ListDevices(Value);
% end
% ListRecords=get(handles.ListRecords,'String');
% Value=get(handles.ListRecords,'Value');
% if ~isequal(Value,1)
%     ListRecords=ListRecords(Value);
% end
% [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords);
% ListXml=get(handles.ListXml,'String');
% Value=get(handles.ListXml,'Value');
% set(handles.ListXml,'Value',Value(1));
% if isequal(Value(1),1)
%     msgbox_uvmat('ERROR','an xml file needs to be selected')
%    return
% else
%     XmlName=ListXml{Value(1)};
% end
% for iexp=1:length(List.Experiment)
%     ExpName=List.Experiment{iexp}.name;
%     if isfield(List.Experiment{iexp},'Device')
%         for idevice=1:length(List.Experiment{iexp}.Device)
%             DeviceName=List.Experiment{iexp}.Device{idevice}.name;
%             if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
%                 for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
%                     FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}
%                     if isequal(FileName,XmlName)
%                         editxml(fullfile(CurrentPath,ExpName,DeviceName,FileName));
%                         return
%                     end
%                 end
%              elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
%                 for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
%                     RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
%                     if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
%                         for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
%                             FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
%                             if isequal(FileName,XmlName)
%                                 editxml(fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName));
%                                 return
%                             end                          
%                         end
%                     end
%                 end
%             end
%         end
%     end
% end


% 
% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% % CurrentPath/Campaign: root directory 
% function  [Title,test_mod]=check_heading(Currentpath,Campaign,Experiment,Device,Record,xmlname,testSubCampaign)
% 
%  %Shema for Heading:
% %  Campaign             
% %  (SubCampaign)
% % Experiment
% %  Device
% %  (Record)
% %  ImageName
% %  DateExp
% %                 old: %Project: suppressed ( changed to Campaign)
%                        %Exp: suppressed (changed to experiment)
%                        %ImaNames: changed to ImageName
% if exist('Record','var') && ~isempty(Record)
%     xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,Record,xmlname);  
%     testrecord=1;
% else
%     xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,xmlname); 
%     testrecord=0;
% end
% if ~exist('testSubCampaign','var')
%     testSubCampaign=0;
% end
% if testSubCampaign
%    SubCampaign=Campaign;
%    [Currentpath,Campaign,DirExt]=fileparts(Currentpath);
%    Campaign=[Campaign DirExt];
% end
% test_mod=0; %test for the modification of the xml file
% t_device=xmltree(xmlfullname);
% Title=get(t_device,1,'name');
% uid_child=children(t_device,1);
% Heading_old=[];
% uidheading=0;
% for ilist=1:length(uid_child)
%     name=get(t_device,uid_child(ilist),'name');
%     if isequal(name,'Heading')
%         uidheading=uid_child(ilist);
%     end
% end
% if uidheading
%     subt=branch(t_device,uidheading);
%     Heading_old=convert(subt);
% else
%    return % do not edit xml files without element 'Heading'
% end
% if ~(isfield(Heading_old,'Campaign')&& isequal(Heading_old.Campaign,Campaign))
%     test_mod=1;
% end
% Heading.Campaign=Campaign;
% if testSubCampaign
%     if ~(isfield(Heading_old,'SubCampaign')&& isequal(Heading_old.SubCampaign,SubCampaign))
%         test_mod=1;
%     end
%     Heading.SubCampaign=SubCampaign;
% end
% if ~(isfield(Heading_old,'Experiment')&& isequal(Heading_old.Experiment,Experiment))
%     test_mod=1;
% end
% Heading.Experiment=Experiment;
% if ~(isfield(Heading_old,'Device')&& isequal(Heading_old.Device,Device))
%     test_mod=1;
% end
% Heading.Device=Device;
% if testrecord
%     if ~(isfield(Heading_old,'Record')&& isequal(Heading_old.Record,Record))
%         test_mod=1;
%     end
%     Heading.Record=Record;
% end
% if isfield(Heading_old,'ImaNames')
%     test_mod=1;
%     if  ~isempty(Heading_old.ImaNames)
%         Heading.ImageName=Heading_old.ImaNames;
%     end
% end
% if isfield(Heading_old,'ImageName')&& ~isempty(Heading_old.ImageName)
%     Heading.ImageName=Heading_old.ImageName;
% end
% if isfield(Heading_old,'DateExp')&& ~isempty(Heading_old.DateExp)
%     Heading.DateExp=Heading_old.DateExp;
% end
% if test_mod && uidheading
%      uid_child=children(t_device,uidheading);
%      t_device=delete(t_device,uid_child);
%     t_device=struct2xml(Heading,t_device,uidheading);
%     backupfile=xmlfullname;
%     testexist=2;
%     while testexist==2
%        backupfile=[backupfile '~'];
%        testexist=exist(backupfile,'file');
%     end
%     [success,message]=copyfile(xmlfullname,backupfile);%make backup
%     if isequal(success,1)
%         delete(xmlfullname)
%     else
%         return
%     end
%     save(t_device,xmlfullname)
% end

%------------------------------------------------------------------------
% --- Executes on button press in HELP.
function HELP_Callback(hObject, eventdata, handles)
path_to_uvmat=which ('uvmat')% check the path of uvmat
pathelp=fileparts(path_to_uvmat);
helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html');
if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC')
else
web([helpfile '#dataview'])    
end

% 
% 
% % --- Executes on selection change in ListXml.
% function ListXml_Callback(hObject, eventdata, handles)
% Value=get(handles.ListXml,'Value');
% if isequal(Value(1),1)
%     set(handles.ListXml,'Value',1);
% end


% --- Executes on button press in clean_civ_cmx.
function clean_civ_cmx_Callback(hObject, eventdata, handles)
message='this function will delete all files with extensions .log, .bat, .cmx,.cmx2,.errors in the input directory(ies)';
answer=msgbox_uvmat('INPUT_Y-N',message);
if ~isequal(answer,'Yes')
    return
end
set(handles.ListExperiments,'Value',1)
ListDataDir(hObject, eventdata, handles)%update the overview of the experiment directories
DataviewData=get(handles.datatree_browser,'UserData')
List=DataviewData.List;
Currentpath=get(handles.SourceDir,'String');
[Currentpath,Campaign,DirExt]=fileparts(Currentpath);
Campaign=[Campaign DirExt];
SubCampaignTest=get(handles.SubCampaignTest,'Value');
nbdelete_tot=0;
for iexp=1:length(List.Experiment)
    set(handles.ListExperiments,'Value',iexp+1)
    drawnow
    test_mod=0;
    ExpName=List.Experiment{iexp}.name;  
    nbdelete=0;
    if isfield(List.Experiment{iexp},'Device')
        for idevice=1:length(List.Experiment{iexp}.Device)
            DeviceName=List.Experiment{iexp}.Device{idevice}.name;     
            if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
                currentdir=fullfile(Currentpath,Campaign,ExpName,DeviceName);
                hdir=dir(currentdir); %list files and dirs
                idir=0;
                for ilist=1:length(hdir)
                    if hdir(ilist).isdir
                        dirname=hdir(ilist).name;
                        if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')
                            CivDir=fullfile(currentdir,dirname)
                            hCivDir=dir(CivDir);
                            for ilist=1:length(hCivDir)
                                FileName=hCivDir(ilist).name;
                                [dd,ff,Ext]=fileparts(FileName);
                                if isequal(Ext,'.log')||isequal(Ext,'.bat')||isequal(Ext,'.cmx')||isequal(Ext,'.cmx2')|| isequal(Ext,'.errors')
                                    delete(fullfile(CivDir,FileName))
                                    nbdelete=nbdelete+1;
                                end
                            end
                        end
                    end
                end
             elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
                for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
                    RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
                    if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
                        'look at subdirectories'
                    end
                end
            end
        end
    end
    display([num2str(nbdelete) ' files deleted'])
    nbdelete_tot=nbdelete_tot+nbdelete;
end
msgbox_uvmat('CONFIRMATION',['END: ' num2str(nbdelete_tot) ' files deleted by clean_civ_cmx'])
set(handles.ListExperiments,'Value',1)

% 
% % --- Executes on button press in OK.
% function OK_Callback(hObject, eventdata, handles)
% %------------------------------------------------------------------------
% CurrentPath=get(handles.SourceDir,'String');
% ListExperiments=get(handles.ListExperiments,'String');
% IndicesExp=get(handles.ListExperiments,'Value');
% if ~isequal(IndicesExp,1)
%     ListExperiments=ListExperiments(IndicesExp);
% end
% ListDevices=get(handles.ListDevices,'String');
% Value=get(handles.ListDevices,'Value');
% if isequal(Value,1)
%     msgbox_uvmat('ERROR','manually select in the GUI dataview the device being calibrated')
%     return
% else 
%     ListDevices=ListDevices(Value);
% end
% ListRecords=get(handles.ListRecords,'String');
% Value=get(handles.ListRecords,'Value');
% if ~isequal(Value,1)
%     ListRecords=ListRecords(Value);
% end
% [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords);
% ListXml=get(handles.ListXml,'String');
% Value=get(handles.ListXml,'Value');
% if isequal(Value,1)
%     msgbox_uvmat('ERROR','you need to select in the GUI dataview the xml files to edit')
%     return
% else
%     ListXml=ListXml(Value);
% end
% 
% %update all the selected xml files
% DataviewData=get(handles.datatree_browser,'UserData');
% % answer=msgbox_uvmat('INPUT_Y-N',[num2str(length(Value)) ' xml files for device ' ListDevices{1} ' will be refreshed with ' ...
% %     DataviewData.GeometryCalib.CalibrationType ' calibration data'])
% % if ~isequal(answer,'Yes')
% %     return
% % end
% %List.Experiment{1}.Device{1}
% %List.Experiment{2}.Device{1}
% for iexp=1:length(List.Experiment)
%     ExpName=List.Experiment{iexp}.name;
%     set(handles.ListExperiments,'Value',IndicesExp(iexp));
%     if isfield(List.Experiment{iexp},'Device')
%         for idevice=1:length(List.Experiment{iexp}.Device)
%             DeviceName=List.Experiment{iexp}.Device{idevice}.name;      
%             if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
%                 for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
%                     FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml};
%                     for ilistxml=1:length(ListXml)
%                         if isequal(FileName,ListXml{ilistxml})
%                             set(handles.ListXml,'Value',Value(ilistxml))
%                             drawnow
%                             xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,FileName);
%                             update_imadoc(DataviewData.GeometryCalib,xmlfullname)
%                             display([xmlfullname ' updated'])
%                             break
%                         end
%                     end
%                 end
%              elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
%                 for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
%                     RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
%                     if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
%                         for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
%                             FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
%                             for ilistxml=1:length(ListXml)
%                                 if isequal(FileName,ListXml{ilistxml})
%                                     set(handles.ListXml,'Value',Value(ilistxml))
%                                     drawnow
%                                     xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName);
%                                     update_imadoc(DataviewData.GeometryCalib,xmlfullname)
%                                     display([xmlfullname ' updated'])
%                                     break
%                                 end
%                             end
%                         end
%                     end
%                 end
%             end
%         end
%     end
% end
% set(handles.ListXml,'Value',Value)   
%     
%     
%     
%     
%     
%     
%     
% CurrentPath=get(handles.SourceDir,'String');%= get(hObject,'String');
% ListExperiments=get(handles.ListExperiments,'String');
% Value=get(handles.ListExperiments,'Value');
% if ~isequal(Value,1)
%     ListExperiments=ListExperiments(Value);
% end
% ListDevices=get(handles.ListDevices,'String');
% Value=get(handles.ListDevices,'Value');
% if isequal(Value,1)
%     msgbox_uvmat('ERROR','manually select in the GUI datatree_browser the device being calibrated')
%     return
% else 
%     ListDevices=ListDevices(Value);
% end
% ListRecords=get(handles.ListRecords,'String');
% Value=get(handles.ListRecords,'Value');
% if ~isequal(Value,1)
%     ListRecords=ListRecords(Value);
% end
% [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords);
% ListXml=get(handles.ListXml,'String');
% Value=get(handles.ListXml,'Value');
% if isequal(Value,1)
%     msgbox_uvmat('ERROR','you need to select in the GUI datatree_browser the xml files to edit')
%     return
% else
%     ListXml=ListXml(Value);
% end
% handles.output.CurrentPath=CurrentPath;
% handles.output.ListExperiments=ListExperiments;
% handles.output.ListDevices=ListDevices;
% handles.output.ListRecords=ListRecords;
% handles.output.ListXml=ListXml;
% handles.output.List=List;
handles.output ='OK, Calibration replicated';
guidata(hObject, handles);% Update handles structure
uiresume(handles.datatree_browser);
% 
% % --- Executes on button press in Cancel.
% function Cancel_Callback(hObject, eventdata, handles)
% handles.output = get(hObject,'String');
% guidata(hObject, handles); % Update handles structure
% % Use UIRESUME instead of delete because the OutputFcn needs
% uiresume(handles.datatree_browser);

% --- Executes when user attempts to close datatree_browser.
function datatree_browser_CloseRequestFcn(hObject, eventdata, handles)
% if isequal(get(handles.datatree_browser, 'waitstatus'), 'waiting')
%     % The GUI is still in UIWAIT, us UIRESUME
%     uiresume(handles.datatree_browser);
% else
%     % The GUI is no longer waiting, just close it
%     delete(handles.datatree_browser);
% end
delete(hObject)