source: trunk/src/dataview.m @ 42

Last change on this file since 42 was 42, checked in by sommeria, 11 years ago

-proj_field, plot_field, civ_3D: bug repair for 3D3C velocity fields (not finished)
-check_function: introduce try/catch for function datenum (error with french systems)
-cleaning of warndlg_uvmat in different fcts (replaced by msgbox_uvmat)

File size: 28.6 KB
Line 
1%'dataview': function for scanning directories in a campaign
2%------------------------------------------------------------------------
3% function varargout = series(varargin)
4% associated with the GUI dataview.fig
5%
6%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7%  Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org.
8%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9%     This file is part of the toolbox UVMAT.
10%
11%     UVMAT is free software; you can redistribute it and/or modify
12%     it under the terms of the GNU General Public License as published by
13%     the Free Software Foundation; either version 2 of the License, or
14%     (at your option) any later version.
15%
16%     UVMAT is distributed in the hope that it will be useful,
17%     but WITHOUT ANY WARRANTY; without even the implied warranty of
18%     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
19%     GNU General Public License (file UVMAT/COPYING.txt) for more details.
20%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21
22function varargout = dataview(varargin)
23
24% Last Modified by GUIDE v2.5 13-Jan-2010 07:28:19
25
26% Begin initialization code - DO NOT EDIT
27gui_Singleton = 1;
28gui_State = struct('gui_Name',       mfilename, ...
29                   'gui_Singleton',  gui_Singleton, ...
30                   'gui_OpeningFcn', @dataview_OpeningFcn, ...
31                   'gui_OutputFcn',  @dataview_OutputFcn, ...
32                   'gui_LayoutFcn',  [] , ...
33                   'gui_Callback',   []);
34if nargin & ischar(varargin{1})
35    gui_State.gui_Callback = str2func(varargin{1});
36end
37
38if nargout
39    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
40else
41    gui_mainfcn(gui_State, varargin{:});
42end
43% End initialization code - DO NOT EDIT
44
45%------------------------------------------------------------------------
46% --- Executes just before dataview is made visible.
47function dataview_OpeningFcn(hObject, eventdata, handles, RootDir, SubCampaignTst,GeometryCalib)
48%------------------------------------------------------------------------
49% Choose default command line output for dataview
50handles.output = 'Cancel';
51
52% Update handles structure
53guidata(hObject, handles);
54testCancel=1;
55testinputstring=0;
56icontype='quest';%default question icon (text input asked)
57
58% Determine the position of the dialog - centered on the screen
59FigPos=get(0,'DefaultFigurePosition');
60OldUnits = get(hObject, 'Units');
61set(hObject, 'Units', 'pixels');
62OldPos = get(hObject,'Position');
63FigWidth = OldPos(3);
64FigHeight = OldPos(4);
65ScreenUnits=get(0,'Units');
66set(0,'Units','pixels');
67ScreenSize=get(0,'ScreenSize');
68set(0,'Units',ScreenUnits);
69
70FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
71FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
72FigPos(3:4)=[FigWidth FigHeight];
73set(hObject, 'Position', FigPos);
74set(hObject, 'Units', OldUnits);
75
76% % Show a question icon from dialogicons.mat - variables questIconData and questIconMap
77% load dialogicons.mat
78% eval(['IconData=' icontype 'IconData;'])
79% eval(['IconCMap=' icontype 'IconMap;'])
80% questIconMap(256,:) = get(handles.figure1, 'Color');
81% Img=image(IconData, 'Parent', handles.axes1);
82% set(handles.figure1, 'Colormap', IconCMap);
83% set(handles.axes1, ...
84%     'Visible', 'off', ...
85%     'YDir'   , 'reverse'       , ...
86%     'XLim'   , get(Img,'XData'), ...
87%     'YLim'   , get(Img,'YData')  ...
88%     );
89if exist('GeometryCalib','var')
90    DataviewData.GeometryCalib=GeometryCalib;
91    set(hObject,'UserData',DataviewData)
92end
93if exist('SubCampaignTst','var') && isequal(SubCampaignTst,'y')
94   set(handles.SubCampaignTest,'Value',1);
95end
96if exist('RootDir','var')
97   set(handles.RootDirectory,'String',RootDir);
98   set(handles.clean_civ_cmx,'Visible','off')
99   set(handles.edit_xml,'Visible','off')
100   set(handles.HELP,'Visible','off')
101   set(handles.OK,'Visible','on')
102   set(handles.Cancel,'Visible','on')
103   set(handles.figure,'WindowStyle','modal')% Make% Make the GUI modal
104   RootDirectory_Callback(hObject, eventdata, handles)
105   % UIWAIT makes translate_points wait for user response (see UIRESUME)
106   uiwait(handles.figure);
107end
108
109%------------------------------------------------------------------------
110% --- Outputs from this function are returned to the command line.
111function varargout = dataview_OutputFcn(hObject, eventdata, handles)
112%------------------------------------------------------------------------
113% Get default command line output from handles structure
114varargout{1} = handles.output;
115delete(handles.figure)
116
117%------------------------------------------------------------------------
118% --- Executes on button press in browser.
119function browser_Callback(hObject, eventdata, handles)
120%------------------------------------------------------------------------
121CurrentFile='/raid/PROJETS';%get(handles.RootDirectory,'String');
122set(handles.SubCampaignTest,'Value',0)
123CampaignDir=uigetdir(CurrentFile,'Open the Campaign directory'); %file browser
124set(handles.RootDirectory,'String',CampaignDir)
125RootDirectory_Callback(hObject, eventdata, handles)
126
127%------------------------------------------------------------------------
128% --- Executes on button press in open_SubCampaign.
129function OpenSubCampaign_Callback(hObject, eventdata, handles)
130%------------------------------------------------------------------------
131CurrentFile='/coriolis/bigone/PROJETS';%get(handles.RootDirectory,'String');
132set(handles.SubCampaignTest,'Value',1)
133CampaignDir=uigetdir(CurrentFile,'Open the Campaign directory'); %file browser
134set(handles.RootDirectory,'String',CampaignDir)
135RootDirectory_Callback(hObject, eventdata, handles)
136
137%------------------------------------------------------------------------
138function RootDirectory_Callback(hObject, eventdata, handles)
139%------------------------------------------------------------------------
140CampaignDir=get(handles.RootDirectory,'String');
141ExpName={''};
142if exist(CampaignDir,'dir')
143    hdir=dir(CampaignDir); %list files and dirs
144    idir=0;
145    for ilist=1:length(hdir)
146        if hdir(ilist).isdir
147            dirname=hdir(ilist).name;
148            if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')
149                idir=idir+1;
150                ExpName{idir}=hdir(ilist).name;
151            end
152            % look for the list of 'devices'
153        else
154            %warning for isolated files
155        end
156    end
157    set(handles.ListExperiments,'String',[{'*'};ExpName'])
158    set(handles.ListExperiments,'Value',1)
159    ListExperiments_Callback(hObject, eventdata, handles)
160else
161    msgbox_uvmat('ERROR',['The input ' CampaignDir ' is not a directory'])
162end
163
164%------------------------------------------------------------------------
165% --- Executes on selection change in ListExperiments.
166 function ListExperiments_Callback(hObject, eventdata, handles)
167%------------------------------------------------------------------------
168CurrentPath=get(handles.RootDirectory,'String');
169ListExperiments=get(handles.ListExperiments,'String');
170list_val=get(handles.ListExperiments,'Value');
171if isequal(list_val(1),1)
172    ListExperiments=ListExperiments(2:end); %choose all experiments
173    testList=1;
174    set(handles.ListExperiments,'Value',1)
175else
176    ListExperiments=ListExperiments(list_val);%choose selected experiments
177    testList=0;
178end
179set(handles.ListDevices,'Value',1)
180set(handles.ListRecords,'Value',1)
181set(handles.ListXml,'Value',1)
182[ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,{},{});
183set(handles.ListRecords,'String',[{'*'};ListRecords'])
184set(handles.ListDevices,'String',[{'*'};ListDevices'])
185set(handles.ListXml,'String',[{'*'};ListXml'])
186if testList
187    DataviewData=get(handles.figure,'UserData');
188    DataView.List=List;
189    set(handles.figure,'UserData',DataviewData)
190end
191set(handles.CampaignDoc,'Visible','on')
192% set(handles.edit_xml,'Visible','on')
193
194%------------------------------------------------------------------------
195% --- Executes on button press in update_headings.
196function ListDevices_Callback(hObject, eventdata, handles)
197CurrentPath=get(handles.RootDirectory,'String');
198ListExperiments=get(handles.ListExperiments,'String');
199list_val=get(handles.ListExperiments,'Value');
200if isequal(list_val,1)
201    ListExperiments=ListExperiments(2:end);
202else
203    ListExperiments=ListExperiments(list_val);
204end
205set(handles.ListRecords,'Value',1)
206set(handles.ListXml,'Value',1)
207ListDevices=get(handles.ListDevices,'String');
208list_val=get(handles.ListDevices,'Value');
209if isequal(list_val,1)
210    ListDevices=ListDevices(2:end);
211else
212    ListDevices=ListDevices(list_val);
213end
214[ListDevices,ListRecords,ListXml]=ListDir(CurrentPath,ListExperiments,ListDevices,{});
215set(handles.ListRecords,'String',[{'*'};ListRecords'])
216set(handles.ListXml,'String',[{'*'};ListXml'])
217
218
219%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
220
221
222
223%------------------------------------------------------------------------
224% --- Executes on selection change in ListRecords.
225function ListRecords_Callback(hObject, eventdata, handles)
226Value=get(handles.ListRecords,'Value');
227if isequal(Value(1),1)
228    set(handles.ListRecords,'Value',1);
229end
230
231%------------------------------------------------------------------------
232% --- Executes on button press in CampaignDoc.
233function CampaignDoc_Callback(hObject, eventdata, handles)
234%------------------------------------------------------------------------   
235answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file')
236if ~isequal(answer{1},'OK')
237    return
238end
239set(handles.ListExperiments,'Value',1)
240ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories
241DataviewData=get(handles.figure,'UserData');
242List=DataviewData.List;
243Currentpath=get(handles.RootDirectory,'String');
244[Currentpath,Campaign,DirExt]=fileparts(Currentpath);
245Campaign=[Campaign DirExt];
246t=xmltree;
247t=set(t,1,'name','CampaignDoc');
248t = attributes(t,'add',1,'source','directory');
249SubCampaignTest=get(handles.SubCampaignTest,'Value');
250root_uid=1;
251if SubCampaignTest
252    %TO DO open an exoiting xml doc
253    [t,root_uid]=add(t,1,'element','SubCampaign');
254    t =attributes(t,'add',root_uid,'DirName',Campaign);
255end
256for iexp=1:length(List.Experiment)
257    set(handles.ListExperiments,'Value',iexp+1)
258    drawnow
259    test_mod=0;
260    [t,uid_exp]=add(t,root_uid,'element','Experiment');
261    t = attributes(t,'add',uid_exp,'i',num2str(iexp));
262    ExpName=List.Experiment{iexp}.name;
263    t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name);
264   
265    if isfield(List.Experiment{iexp},'Device')
266        for idevice=1:length(List.Experiment{iexp}.Device)
267            [t,uid_device]=add(t,uid_exp,'element','Device');
268            DeviceName=List.Experiment{iexp}.Device{idevice}.name;
269            t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name);       
270            if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
271                for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
272                    FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml};
273                    [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest);
274                    if test
275                        [List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated']
276                    end
277                    if isequal(Title,'ImaDoc')
278                        [t,uid_xml]=add(t,uid_device,'element','ImaDoc');
279                        t = attributes(t,'add',uid_xml,'source','file');
280                        [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml});                   
281                    end
282                end
283             elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
284                for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
285                    RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
286                    [t,uid_record]=add(t,uid_device,'element','Record');
287                    t = attributes(t,'add',uid_record,'DirName',RecordName);
288                    if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
289                        for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
290                            FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
291                            [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest);
292                            if test
293                                [FileName ' , Heading updated']
294                            end
295                            [t,uid_xml]=add(t,uid_record,'element','ImaDoc');
296                            t = attributes(t,'add',uid_xml,'source','file');
297                            [t]=add(t,uid_xml,'chardata',FileName);
298                        end
299                    end
300                end
301            end
302        end
303    end
304end
305set(handles.ListExperiments,'Value',1)
306outputdir=get(handles.RootDirectory,'String');
307[path,dirname]=fileparts(outputdir);
308outputfile=fullfile(outputdir,[dirname '.xml']);
309%campaigndoc(t);
310save(t,outputfile)
311
312%------------------------------------------------------------------------
313% --- Executes on button press in CampaignDoc.
314function edit_xml_Callback(hObject, eventdata, handles)
315%------------------------------------------------------------------------
316CurrentPath=get(handles.RootDirectory,'String');
317%[CurrentPath,Name,Ext]=fileparts(CurrentDir);
318ListExperiments=get(handles.ListExperiments,'String');
319Value=get(handles.ListExperiments,'Value');
320if ~isequal(Value,1)
321    ListExperiments=ListExperiments(Value);
322end
323ListDevices=get(handles.ListDevices,'String');
324Value=get(handles.ListDevices,'Value');
325if ~isequal(Value,1)
326    ListDevices=ListDevices(Value);
327end
328ListRecords=get(handles.ListRecords,'String');
329Value=get(handles.ListRecords,'Value');
330if ~isequal(Value,1)
331    ListRecords=ListRecords(Value);
332end
333[ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords);
334ListXml=get(handles.ListXml,'String');
335Value=get(handles.ListXml,'Value');
336set(handles.ListXml,'Value',Value(1));
337if isequal(Value(1),1)
338    msgbox_uvmat('ERROR','an xml file needs to be selected')
339   return
340else
341    XmlName=ListXml{Value(1)};
342end
343for iexp=1:length(List.Experiment)
344    ExpName=List.Experiment{iexp}.name;
345    if isfield(List.Experiment{iexp},'Device')
346        for idevice=1:length(List.Experiment{iexp}.Device)
347            DeviceName=List.Experiment{iexp}.Device{idevice}.name;
348            if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
349                for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
350                    FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}
351                    if isequal(FileName,XmlName)
352                        editxml(fullfile(CurrentPath,ExpName,DeviceName,FileName));
353                        return
354                    end
355                end
356             elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
357                for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
358                    RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
359                    if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
360                        for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
361                            FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
362                            if isequal(FileName,XmlName)
363                                editxml(fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName));
364                                return
365                            end                         
366                        end
367                    end
368                end
369            end
370        end
371    end
372end
373
374
375
376%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
377% CurrentPath/Campaign: root directory
378function  [Title,test_mod]=check_heading(Currentpath,Campaign,Experiment,Device,Record,xmlname,testSubCampaign)
379
380 %Shema for Heading:
381%  Campaign             
382%  (SubCampaign)
383% Experiment
384%  Device
385%  (Record)
386%  ImageName
387%  DateExp
388%                 old: %Project: suppressed ( changed to Campaign)
389                       %Exp: suppressed (changed to experiment)
390                       %ImaNames: changed to ImageName
391if exist('Record','var') && ~isempty(Record)
392    xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,Record,xmlname); 
393    testrecord=1;
394else
395    xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,xmlname);
396    testrecord=0;
397end
398if ~exist('testSubCampaign','var')
399    testSubCampaign=0;
400end
401if testSubCampaign
402   SubCampaign=Campaign;
403   [Currentpath,Campaign,DirExt]=fileparts(Currentpath);
404   Campaign=[Campaign DirExt];
405end
406test_mod=0; %test for the modification of the xml file
407t_device=xmltree(xmlfullname);
408Title=get(t_device,1,'name');
409uid_child=children(t_device,1);
410Heading_old=[];
411uidheading=0;
412for ilist=1:length(uid_child)
413    name=get(t_device,uid_child(ilist),'name');
414    if isequal(name,'Heading')
415        uidheading=uid_child(ilist);
416    end
417end
418if uidheading
419    subt=branch(t_device,uidheading);
420    Heading_old=convert(subt);
421else
422   return % do not edit xml files without element 'Heading'
423end
424if ~(isfield(Heading_old,'Campaign')&& isequal(Heading_old.Campaign,Campaign))
425    test_mod=1;
426end
427Heading.Campaign=Campaign;
428if testSubCampaign
429    if ~(isfield(Heading_old,'SubCampaign')&& isequal(Heading_old.SubCampaign,SubCampaign))
430        test_mod=1;
431    end
432    Heading.SubCampaign=SubCampaign;
433end
434if ~(isfield(Heading_old,'Experiment')&& isequal(Heading_old.Experiment,Experiment))
435    test_mod=1;
436end
437Heading.Experiment=Experiment;
438if ~(isfield(Heading_old,'Device')&& isequal(Heading_old.Device,Device))
439    test_mod=1;
440end
441Heading.Device=Device;
442if testrecord
443    if ~(isfield(Heading_old,'Record')&& isequal(Heading_old.Record,Record))
444        test_mod=1;
445    end
446    Heading.Record=Record;
447end
448if isfield(Heading_old,'ImaNames')
449    test_mod=1;
450    if  ~isempty(Heading_old.ImaNames)
451        Heading.ImageName=Heading_old.ImaNames;
452    end
453end
454if isfield(Heading_old,'ImageName')&& ~isempty(Heading_old.ImageName)
455    Heading.ImageName=Heading_old.ImageName;
456end
457if isfield(Heading_old,'DateExp')&& ~isempty(Heading_old.DateExp)
458    Heading.DateExp=Heading_old.DateExp;
459end
460if test_mod && uidheading
461     uid_child=children(t_device,uidheading);
462     t_device=delete(t_device,uid_child);
463    t_device=struct2xml(Heading,t_device,uidheading);
464    backupfile=xmlfullname;
465    testexist=2;
466    while testexist==2
467       backupfile=[backupfile '~'];
468       testexist=exist(backupfile,'file');
469    end
470    [success,message]=copyfile(xmlfullname,backupfile);%make backup
471    if isequal(success,1)
472        delete(xmlfullname)
473    else
474        return
475    end
476    save(t_device,xmlfullname)
477end
478
479%------------------------------------------------------------------------
480% --- Executes on button press in HELP.
481function HELP_Callback(hObject, eventdata, handles)
482path_to_uvmat=which ('uvmat')% check the path of uvmat
483pathelp=fileparts(path_to_uvmat);
484helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html');
485if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC')
486else
487web([helpfile '#dataview'])   
488end
489
490
491
492% --- Executes on selection change in ListXml.
493function ListXml_Callback(hObject, eventdata, handles)
494Value=get(handles.ListXml,'Value');
495if isequal(Value(1),1)
496    set(handles.ListXml,'Value',1);
497end
498
499
500% --- Executes on button press in clean_civ_cmx.
501function clean_civ_cmx_Callback(hObject, eventdata, handles)
502message='this function will delete all files with extensions .log, .bat, .cmx,.cmx2,.errors in the input directory(ies)';
503answer=msgbox_uvmat('INPUT_Y-N',message);
504if ~isequal(answer{1},'OK')
505    return
506end
507set(handles.ListExperiments,'Value',1)
508ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories
509DataviewData=get(handles.figure,'UserData');
510List=DataviewData.List;
511Currentpath=get(handles.RootDirectory,'String');
512[Currentpath,Campaign,DirExt]=fileparts(Currentpath);
513Campaign=[Campaign DirExt];
514SubCampaignTest=get(handles.SubCampaignTest,'Value');
515nbdelete_tot=0;
516for iexp=1:length(List.Experiment)
517    set(handles.ListExperiments,'Value',iexp+1)
518    drawnow
519    test_mod=0;
520    ExpName=List.Experiment{iexp}.name; 
521    nbdelete=0;
522    if isfield(List.Experiment{iexp},'Device')
523        for idevice=1:length(List.Experiment{iexp}.Device)
524            DeviceName=List.Experiment{iexp}.Device{idevice}.name;     
525            if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
526                currentdir=fullfile(Currentpath,Campaign,ExpName,DeviceName);
527                hdir=dir(currentdir); %list files and dirs
528                idir=0;
529                for ilist=1:length(hdir)
530                    if hdir(ilist).isdir
531                        dirname=hdir(ilist).name;
532                        if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')
533                            CivDir=fullfile(currentdir,dirname)
534                            hCivDir=dir(CivDir);
535                            for ilist=1:length(hCivDir)
536                                FileName=hCivDir(ilist).name;
537                                [dd,ff,Ext]=fileparts(FileName);
538                                if isequal(Ext,'.log')||isequal(Ext,'.bat')||isequal(Ext,'.cmx')||isequal(Ext,'.cmx2')|| isequal(Ext,'.errors')
539                                    delete(fullfile(CivDir,FileName))
540                                    nbdelete=nbdelete+1;
541                                end
542                            end
543                        end
544                    end
545                end
546             elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
547                for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
548                    RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
549                    if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
550                        'look at subdirectories'
551                    end
552                end
553            end
554        end
555    end
556    display([num2str(nbdelete) ' files deleted'])
557    nbdelete_tot=nbdelete_tot+nbdelete;
558end
559msgbox_uvmat('CONFIRMATION',['END: ' num2str(nbdelete_tot) ' files deleted by clean_civ_cmx'])
560set(handles.ListExperiments,'Value',1)
561
562
563% --- Executes on button press in OK.
564function OK_Callback(hObject, eventdata, handles)
565%------------------------------------------------------------------------
566CurrentPath=get(handles.RootDirectory,'String');
567ListExperiments=get(handles.ListExperiments,'String');
568IndicesExp=get(handles.ListExperiments,'Value');
569if ~isequal(IndicesExp,1)
570    ListExperiments=ListExperiments(IndicesExp);
571end
572ListDevices=get(handles.ListDevices,'String');
573Value=get(handles.ListDevices,'Value');
574if isequal(Value,1)
575    msgbox_uvmat('ERROR','manually select in the GUI dataview the device being calibrated')
576    return
577else
578    ListDevices=ListDevices(Value);
579end
580ListRecords=get(handles.ListRecords,'String');
581Value=get(handles.ListRecords,'Value');
582if ~isequal(Value,1)
583    ListRecords=ListRecords(Value);
584end
585[ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords);
586ListXml=get(handles.ListXml,'String');
587Value=get(handles.ListXml,'Value');
588if isequal(Value,1)
589    msgbox_uvmat('ERROR','you need to select in the GUI dataview the xml files to edit')
590    return
591else
592    ListXml=ListXml(Value);
593end
594
595%update all the selected xml files
596DataviewData=get(handles.figure,'UserData');
597% answer=msgbox_uvmat('INPUT_Y-N',[num2str(length(Value)) ' xml files for device ' ListDevices{1} ' will be refreshed with ' ...
598%     DataviewData.GeometryCalib.CalibrationType ' calibration data'])
599% if ~isequal(answer,'Yes')
600%     return
601% end
602%List.Experiment{1}.Device{1}
603%List.Experiment{2}.Device{1}
604for iexp=1:length(List.Experiment)
605    ExpName=List.Experiment{iexp}.name;
606    set(handles.ListExperiments,'Value',IndicesExp(iexp));
607    if isfield(List.Experiment{iexp},'Device')
608        for idevice=1:length(List.Experiment{iexp}.Device)
609            DeviceName=List.Experiment{iexp}.Device{idevice}.name;     
610            if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
611                for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
612                    FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml};
613                    for ilistxml=1:length(ListXml)
614                        if isequal(FileName,ListXml{ilistxml})
615                            set(handles.ListXml,'Value',Value(ilistxml))
616                            drawnow
617                            xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,FileName);
618                            update_imadoc(DataviewData.GeometryCalib,xmlfullname)
619                            display([xmlfullname ' updated'])
620                            break
621                        end
622                    end
623                end
624             elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
625                for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
626                    RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
627                    if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
628                        for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
629                            FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
630                            for ilistxml=1:length(ListXml)
631                                if isequal(FileName,ListXml{ilistxml})
632                                    set(handles.ListXml,'Value',Value(ilistxml))
633                                    drawnow
634                                    xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName);
635                                    update_imadoc(DataviewData.GeometryCalib,xmlfullname)
636                                    display([xmlfullname ' updated'])
637                                    break
638                                end
639                            end
640                        end
641                    end
642                end
643            end
644        end
645    end
646end
647set(handles.ListXml,'Value',Value)   
648%     
649%     
650%     
651%     
652%     
653%     
654%     
655% CurrentPath=get(handles.RootDirectory,'String');%= get(hObject,'String');
656% ListExperiments=get(handles.ListExperiments,'String');
657% Value=get(handles.ListExperiments,'Value');
658% if ~isequal(Value,1)
659%     ListExperiments=ListExperiments(Value);
660% end
661% ListDevices=get(handles.ListDevices,'String');
662% Value=get(handles.ListDevices,'Value');
663% if isequal(Value,1)
664%     msgbox_uvmat('ERROR','manually select in the GUI dataview the device being calibrated')
665%     return
666% else
667%     ListDevices=ListDevices(Value);
668% end
669% ListRecords=get(handles.ListRecords,'String');
670% Value=get(handles.ListRecords,'Value');
671% if ~isequal(Value,1)
672%     ListRecords=ListRecords(Value);
673% end
674% [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords);
675% ListXml=get(handles.ListXml,'String');
676% Value=get(handles.ListXml,'Value');
677% if isequal(Value,1)
678%     msgbox_uvmat('ERROR','you need to select in the GUI dataview the xml files to edit')
679%     return
680% else
681%     ListXml=ListXml(Value);
682% end
683% handles.output.CurrentPath=CurrentPath;
684% handles.output.ListExperiments=ListExperiments;
685% handles.output.ListDevices=ListDevices;
686% handles.output.ListRecords=ListRecords;
687% handles.output.ListXml=ListXml;
688% handles.output.List=List;
689handles.output ='OK, Calibration replicated';
690guidata(hObject, handles);% Update handles structure
691uiresume(handles.figure);
692
693% --- Executes on button press in Cancel.
694function Cancel_Callback(hObject, eventdata, handles)
695handles.output = get(hObject,'String');
696guidata(hObject, handles); % Update handles structure
697% Use UIRESUME instead of delete because the OutputFcn needs
698uiresume(handles.figure);
699
700% --- Executes when user attempts to close figure.
701function figure_CloseRequestFcn(hObject, eventdata, handles)
702if isequal(get(handles.figure, 'waitstatus'), 'waiting')
703    % The GUI is still in UIWAIT, us UIRESUME
704    uiresume(handles.figure);
705else
706    % The GUI is no longer waiting, just close it
707    delete(handles.figure);
708end
709
710% --- Executes on key press over figure1 with no controls selected.
711function figure_KeyPressFcn(hObject, eventdata, handles)
712% Check for "enter" or "escape"
713if isequal(get(hObject,'CurrentKey'),'escape')
714    % User said no by hitting escape
715    handles.output = 'Cancel';
716   
717    % Update handles structure
718    guidata(hObject, handles);
719   
720    uiresume(handles.figure);
721end
722if isequal(get(hObject,'CurrentKey'),'return')
723    uiresume(handles.figure);
724end
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