[376] | 1 | %'get_file_series': determine the list of file names and file indices for functions called by 'series'. |
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| 2 | %------------------------------------------------------------------------ |
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| 3 | % [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param) |
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| 4 | % |
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| 5 | % OUTPUT: |
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[446] | 6 | % filecell{iview,fileindex}: cell array representing the list of file names |
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| 7 | % iview: line in the table corresponding to a given file series |
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| 8 | % fileindex: file index within the file series, |
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[453] | 9 | % i1_series{iview}(ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j |
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| 10 | % i1_series{iview}(fileindex) expresses the same indices as a 1D array in file indices |
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[446] | 11 | |
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[376] | 12 | % INPUT: |
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| 13 | % Param: structure of input parameters as read from the GUI series (by the function read_GUI) |
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| 14 | |
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[373] | 15 | function [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param) |
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[376] | 16 | |
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[591] | 17 | filecell={};i1_series={};i2_series={};j1_series={};j2_series={}; |
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[373] | 18 | InputTable=Param.InputTable; |
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| 19 | first_i=Param.IndexRange.first_i; |
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| 20 | incr_i=Param.IndexRange.incr_i; |
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| 21 | last_i=Param.IndexRange.last_i; |
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[635] | 22 | % ref_i=first_i:incr_i:last_i; |
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| 23 | %ref_j=[]; |
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| 24 | first_j=[];last_j=[];incr_j=1;%default |
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[400] | 25 | if isfield(Param.IndexRange,'first_j') |
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[373] | 26 | first_j=Param.IndexRange.first_j; |
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| 27 | incr_j=Param.IndexRange.incr_j; |
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| 28 | last_j=Param.IndexRange.last_j; |
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| 29 | end |
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[391] | 30 | |
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[373] | 31 | %% determine the list of input file names |
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| 32 | nbmissing=0; |
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[635] | 33 | NbView=size(InputTable,1); |
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| 34 | i1_series=cell(NbView,1);% initiate index series with empty cells |
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| 35 | i2_series=cell(NbView,1); |
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| 36 | j1_series=cell(NbView,1); |
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| 37 | j2_series=cell(NbView,1); |
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| 38 | for iview=1:NbView |
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[408] | 39 | r.mode=''; |
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| 40 | if isfield (Param.IndexRange,'PairString') |
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[450] | 41 | if ischar(Param.IndexRange.PairString) |
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| 42 | Param.IndexRange.PairString={Param.IndexRange.PairString}; |
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| 43 | end |
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[635] | 44 | r=regexp(Param.IndexRange.PairString{iview,1},'(?<mode>(Di=)|(Dj=)) -*(?<num1>\d+)\|(?<num2>\d+)','names');%look for mode=Dj or Di |
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[408] | 45 | if isempty(r) |
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[635] | 46 | r=regexp(Param.IndexRange.PairString{iview,1},'(?<num1>\d+)(?<mode>-)(?<num2>\d+)','names');%look for burst pairs |
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[537] | 47 | end |
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[408] | 48 | % TODO case of free pairs: |
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| 49 | %r=regexp(pair_string,'.*\D(?<num1>[\d+|*])(?<delim>[-||])(?<num2>[\d+|*])','names'); |
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| 50 | end |
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[440] | 51 | if isempty(r)||isempty(r.mode) |
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| 52 | r(1).num1=''; |
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| 53 | r(1).num2=''; |
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[540] | 54 | if isfield (Param.IndexRange,'PairString') && strcmp(Param.IndexRange.PairString{iview,1},'j=*-*') |
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[537] | 55 | r(1).mode='*-*'; |
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| 56 | else |
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[635] | 57 | r(1).mode=''; |
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[537] | 58 | end |
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[408] | 59 | end |
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[639] | 60 | |
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| 61 | if isempty(incr_i) || isempty(incr_j) || isequal(r(1).mode,'*-*')|| isequal(r(1).mode,'*|*')% free pairs or increment |
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[537] | 62 | FilePath=fullfile(InputTable{iview,1},InputTable{iview,2}); |
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| 63 | fileinput=[InputTable{iview,3} InputTable{iview,4} InputTable{iview,5}]; |
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[635] | 64 | [tild,tild,tild,i1_series{iview},i2_series{iview},j1_series{iview},j2_series{iview},NomType,FileType,FileInfo,MovieObject,... |
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| 65 | i1_input,i2_input,j1_input,j2_input]=find_file_series(FilePath,fileinput); |
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| 66 | i1_series{iview}=squeeze(i1_series{iview}(1,:,:)); %select first pair index as ordered by find_file_series |
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[639] | 67 | i2_series{iview}=squeeze(i2_series{iview}(1,:,:)); %select first pair index as ordered by find_file_series |
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[537] | 68 | j1_series{iview}=squeeze(j1_series{iview}(1,:,:)); %first pair index |
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[635] | 69 | j2_series{iview}=squeeze(j2_series{iview}(1,:,:)); %second pair index |
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| 70 | if isempty(incr_i) |
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[639] | 71 | if isempty(first_j) || isempty(incr_j) % no j index or no defined increment for j |
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[643] | 72 | ref_j=find(max(i1_series{iview},[],2)); |
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| 73 | ref_i=find(max(i1_series{iview},[],1)); |
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[635] | 74 | ref_i=ref_i-1; |
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| 75 | ref_j=ref_j-1; |
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| 76 | ref_i=ref_i(ref_i>=first_i & ref_i<=last_i); |
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| 77 | ref_j=ref_j(ref_j>=first_j & ref_j<=last_j); |
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| 78 | else |
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| 79 | ref_j=first_j:incr_j:last_j; |
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[643] | 80 | ref_i=find(max(i1_series{iview}(:,ref_j),[],1)); |
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[635] | 81 | ref_i=ref_i-1; |
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| 82 | ref_i=ref_i(ref_i>=first_i & ref_i<=last_i); |
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| 83 | end |
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| 84 | else |
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| 85 | ref_i=first_i:incr_i:last_i;%default |
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[639] | 86 | if isempty(first_j) ||isempty(incr_j)% no j index or no defined increment for j |
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[643] | 87 | ref_j=find(max(i1_series{iview},[],2)); |
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[635] | 88 | ref_j=ref_j-1; |
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| 89 | ref_j=ref_j(ref_j>=first_j & ref_j<=last_j); |
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| 90 | else |
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| 91 | ref_j=first_j:incr_j:last_j; |
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| 92 | end |
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| 93 | end |
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[639] | 94 | if isempty(ref_j) |
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| 95 | i1_series{iview}=i1_series{iview}(2,ref_i+1); |
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| 96 | if ~isempty(i2_series{iview}) |
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| 97 | i2_series{iview}=i2_series{iview}(2,ref_i+1); |
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| 98 | end |
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| 99 | else |
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| 100 | i1_series{iview}=i1_series{iview}(ref_j+1,ref_i+1); |
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| 101 | if ~isempty(i2_series{iview}) |
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| 102 | i2_series{iview}=i2_series{iview}(ref_j+1,ref_i+1); |
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| 103 | end |
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[635] | 104 | end |
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[639] | 105 | if ~isempty(j1_series{iview}) |
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| 106 | j1_series{iview}=j1_series{iview}(ref_j+1,ref_i+1); |
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| 107 | if ~isempty(j2_series{iview}) |
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| 108 | j2_series{iview}=j2_series{iview}(ref_j+1,ref_i+1); |
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| 109 | end |
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| 110 | end |
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[537] | 111 | else |
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[635] | 112 | ref_i=first_i:incr_i:last_i;%default |
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| 113 | ref_j=first_j:incr_j:last_j;%default |
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[537] | 114 | [i1_series{iview},i2_series{iview},j1_series{iview},j2_series{iview}]=find_file_indices(ref_i,ref_j,str2num(r.num1),str2num(r.num2),r.mode); |
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| 115 | end |
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[639] | 116 | % if ~isequal(r(1).mode,'*-*')% imposed pairs or single i and/or j index |
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| 117 | % [i1_series{iview},i2_series{iview},j1_series{iview},j2_series{iview}]=find_file_indices(ref_i,ref_j,str2num(r.num1),str2num(r.num2),r.mode); |
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| 118 | % end |
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[635] | 119 | |
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[639] | 120 | %list of files |
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[373] | 121 | i2=[];j1=[];j2=[]; |
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[453] | 122 | for ifile=1:numel(i1_series{iview}) |
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| 123 | i1=i1_series{iview}(ifile); |
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| 124 | if ~isempty(i2_series{iview}) |
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| 125 | i2=i2_series{iview}(ifile); |
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[373] | 126 | end |
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[453] | 127 | if ~isempty(j1_series{iview}) |
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| 128 | j1=j1_series{iview}(ifile); |
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[373] | 129 | end |
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[453] | 130 | if ~isempty(j2_series{iview}) |
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| 131 | j2=j2_series{iview}(ifile); |
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[373] | 132 | end |
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[635] | 133 | filecell{iview,ifile}=fullfile_uvmat(InputTable{iview,1},InputTable{iview,2},InputTable{iview,3},InputTable{iview,5},InputTable{iview,4},i1,i2,j1,j2); |
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[373] | 134 | end |
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| 135 | end |
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| 136 | |
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| 137 | |
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| 138 | function [i1_series,i2_series,j1_series,j2_series]=find_file_indices(ref_i,ref_j,num1,num2,mode) |
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| 139 | i1_series=ref_i;%default |
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| 140 | j1_series=[]; |
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| 141 | if ~isempty(ref_j) |
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[400] | 142 | [i1_series,j1_series]=meshgrid(ref_i,ref_j); |
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[373] | 143 | end |
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[393] | 144 | i2_series=i1_series; |
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| 145 | j2_series=j1_series; |
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[391] | 146 | |
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[373] | 147 | switch mode |
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[393] | 148 | case 'Di=' % case 'series(Di)') |
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[373] | 149 | i1_series=i1_series-num1; |
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| 150 | i2_series=i2_series+num2; |
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[393] | 151 | case 'Dj=' % case 'series(Dj)' |
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| 152 | j1_series=j1_series-num1; |
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| 153 | j2_series=j2_series+num2; |
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| 154 | case '-' % case 'bursts' |
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| 155 | j1_series=num1*ones(size(i1_series)); |
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| 156 | j2_series=num2*ones(size(i1_series)); |
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[373] | 157 | end |
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