source: trunk/src/get_file_series.m @ 1060

Last change on this file since 1060 was 1027, checked in by g7moreau, 3 years ago
  • Update Copyright 2017 -> 2018
File size: 7.7 KB
Line 
1%'get_file_series': determine the list of input file names and file indices for functions called by 'series'.
2%------------------------------------------------------------------------
3% [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param)
4%
5% OUTPUT:
6% filecell{iview,fileindex}: cell array representing the list of file names
7%        iview: line in the table corresponding to a given file series
8%        fileindex: file index within  the file series,
9% i1_series{iview}(ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j
10% i1_series{iview}(fileindex) expresses the same indices as a 1D array in file indices
11%
12% INPUT:
13% Param: structure of input parameters as read from the GUI series (by the function read_GUI)
14
15%=======================================================================
16% Copyright 2008-2018, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France
17%   http://www.legi.grenoble-inp.fr
18%   Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr
19%
20%     This file is part of the toolbox UVMAT.
21%
22%     UVMAT is free software; you can redistribute it and/or modify
23%     it under the terms of the GNU General Public License as published
24%     by the Free Software Foundation; either version 2 of the license,
25%     or (at your option) any later version.
26%
27%     UVMAT is distributed in the hope that it will be useful,
28%     but WITHOUT ANY WARRANTY; without even the implied warranty of
29%     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
30%     GNU General Public License (see LICENSE.txt) for more details.
31%=======================================================================
32
33function [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param)
34
35filecell={};
36InputTable=Param.InputTable;
37first_i=Param.IndexRange.first_i;
38incr_i=Param.IndexRange.incr_i;
39last_i=Param.IndexRange.last_i;
40first_j=[];last_j=[];incr_j=1;%default
41if isfield(Param.IndexRange,'first_j')&& isfield(Param.IndexRange,'last_j')
42    first_j=Param.IndexRange.first_j;
43    last_j=Param.IndexRange.last_j;
44end
45if isfield(Param.IndexRange,'incr_j')
46    incr_j=Param.IndexRange.incr_j;
47end
48
49%% determine the list of input file names
50% nbmissing=0;
51NbView=size(InputTable,1);
52i1_series=cell(NbView,1);% initiate index series with empty cells
53i2_series=cell(NbView,1);
54j1_series=cell(NbView,1);
55j2_series=cell(NbView,1);
56for iview=1:NbView
57    r.mode='';
58    if isfield (Param.IndexRange,'PairString')
59        if ischar(Param.IndexRange.PairString)
60            Param.IndexRange.PairString={Param.IndexRange.PairString};
61        end
62        if size(Param.IndexRange.PairString,1)>=iview && ~isempty(Param.IndexRange.PairString{iview,1})
63            r=regexp(Param.IndexRange.PairString{iview,1},'(?<mode>(Di=)|(Dj=)) -*(?<num1>\d+)\|(?<num2>\d+)','names');%look for mode=Dj or Di
64            if isempty(r)
65                r=regexp(Param.IndexRange.PairString{iview,1},'(?<num1>\d+)(?<mode>-)(?<num2>\d+)','names');%look for burst pairs
66            end
67        end
68        % TODO case of free pairs:
69        %r=regexp(pair_string,'.*\D(?<num1>[\d+|*])(?<delim>[-||])(?<num2>[\d+|*])','names');
70    end
71    if isempty(r)||isempty(r.mode)
72        r(1).num1='';
73        r(1).num2='';
74        if isfield (Param.IndexRange,'PairString') && size(Param.IndexRange.PairString,1)>=iview &&...
75                                                           strcmp(Param.IndexRange.PairString{iview,1},'j=*-*')
76            r(1).mode='*-*';
77        else
78            r(1).mode='';
79        end
80    end
81   
82    if isempty(incr_i) || isempty(incr_j) || isequal(r(1).mode,'*-*')|| isequal(r(1).mode,'*|*')% free pairs or increment
83        FilePath=fullfile(InputTable{iview,1},InputTable{iview,2});
84        fileinput=[InputTable{iview,3} InputTable{iview,4} InputTable{iview,5}];
85        [tild,tild,tild,i1_series{iview},i2_series{iview},j1_series{iview},j2_series{iview},NomType,FileInfo,MovieObject,...
86            i1_input,i2_input,j1_input,j2_input]=find_file_series(FilePath,fileinput);
87        i1_series{iview}=squeeze(i1_series{iview}(1,:,:)); %select first  pair index as ordered by find_file_series
88        i2_series{iview}=squeeze(i2_series{iview}(1,:,:)); %select first  pair index as ordered by find_file_series
89        j1_series{iview}=squeeze(j1_series{iview}(1,:,:)); %first  pair index
90        j2_series{iview}=squeeze(j2_series{iview}(1,:,:)); %second  pair index
91        if isempty(incr_i)
92            if isempty(first_j) || isempty(incr_j) % no j index or no defined increment for j
93                ref_j=find(max(i1_series{iview},[],2));
94                ref_i=find(max(i1_series{iview},[],1));
95                ref_i=ref_i-1;
96                ref_j=ref_j-1;
97                ref_i=ref_i(ref_i>=first_i & ref_i<=last_i);
98                ref_j=ref_j(ref_j>=first_j & ref_j<=last_j);
99            else
100                ref_j=first_j:incr_j:last_j;
101                ref_i=find(max(i1_series{iview}(:,ref_j),[],1));
102                ref_i=ref_i-1;
103                ref_i=ref_i(ref_i>=first_i & ref_i<=last_i);
104            end
105        else
106            ref_i=first_i:incr_i:last_i;%default
107            if isempty(first_j) ||isempty(incr_j)% no j index or no defined increment for j
108                ref_j=find(max(i1_series{iview},[],2));
109                ref_j=ref_j-1;
110                ref_j=ref_j(ref_j>=first_j & ref_j<=last_j);
111            else
112                ref_j=first_j:incr_j:last_j;
113            end
114        end
115        if isempty(ref_j)
116            i1_series{iview}=i1_series{iview}(2,ref_i+1);
117            if ~isempty(i2_series{iview})
118                i2_series{iview}=i2_series{iview}(2,ref_i+1);
119            end
120        else
121            i1_series{iview}=i1_series{iview}(ref_j+1,ref_i+1);
122            if ~isempty(i2_series{iview})
123                i2_series{iview}=i2_series{iview}(ref_j+1,ref_i+1);
124            end
125        end
126        if ~isempty(j1_series{iview})
127            j1_series{iview}=j1_series{iview}(ref_j+1,ref_i+1);
128            if ~isempty(j2_series{iview})
129                j2_series{iview}=j2_series{iview}(ref_j+1,ref_i+1);
130            end
131        end
132    else
133        ref_i=first_i:incr_i:last_i;%default
134        ref_j=first_j:incr_j:last_j;%default
135        [i1_series{iview},i2_series{iview},j1_series{iview},j2_series{iview}]=find_file_indices(ref_i,ref_j,str2num(r.num1),str2num(r.num2),r.mode);
136    end
137    %     if ~isequal(r(1).mode,'*-*')% imposed pairs or single i and/or j index
138    %         [i1_series{iview},i2_series{iview},j1_series{iview},j2_series{iview}]=find_file_indices(ref_i,ref_j,str2num(r.num1),str2num(r.num2),r.mode);
139    %     end
140   
141    %list of files
142    i2=[];j1=[];j2=[];
143    for ifile=1:numel(i1_series{iview})
144        i1=i1_series{iview}(ifile);
145        if ~isempty(i2_series{iview})
146            i2=i2_series{iview}(ifile);
147        end
148        if ~isempty(j1_series{iview})
149            j1=j1_series{iview}(ifile);
150        end
151        if ~isempty(j2_series{iview})
152            j2=j2_series{iview}(ifile);
153        end
154        filecell{iview,ifile}=fullfile_uvmat(InputTable{iview,1},InputTable{iview,2},InputTable{iview,3},InputTable{iview,5},InputTable{iview,4},i1,i2,j1,j2);
155    end
156end
157
158
159function [i1_series,i2_series,j1_series,j2_series]=find_file_indices(ref_i,ref_j,num1,num2,mode)
160i1_series=ref_i;%default
161j1_series=[];
162if ~isempty(ref_j)
163    [i1_series,j1_series]=meshgrid(ref_i,ref_j);
164end
165i2_series=i1_series;
166j2_series=j1_series;
167
168switch mode
169    case 'Di='  %  case 'series(Di)')
170        i1_series=i1_series-num1;
171        i2_series=i2_series+num2;
172    case 'Dj='  %  case 'series(Dj)'
173        j1_series=j1_series-num1;
174        j2_series=j2_series+num2;
175    case '-'  % case 'bursts'
176        j1_series=num1*ones(size(i1_series));
177        j2_series=num2*ones(size(i1_series));
178end
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