[242] | 1 | %------------------------------------------------------------------------ |
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| 2 | %'phys_XYZ':transforms image (px) to real world (phys) coordinates using geometric calibration parameters |
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| 3 | % function [Xphys,Yphys]=phys_XYZ(Calib,X,Y,Z) |
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| 4 | % |
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| 5 | %OUTPUT: |
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| 6 | % |
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| 7 | %INPUT: |
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| 8 | %Z: index of plane |
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[809] | 9 | |
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| 10 | %======================================================================= |
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[924] | 11 | % Copyright 2008-2016, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France |
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[809] | 12 | % http://www.legi.grenoble-inp.fr |
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| 13 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
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| 14 | % |
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| 15 | % This file is part of the toolbox UVMAT. |
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| 16 | % |
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| 17 | % UVMAT is free software; you can redistribute it and/or modify |
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| 18 | % it under the terms of the GNU General Public License as published |
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| 19 | % by the Free Software Foundation; either version 2 of the license, |
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| 20 | % or (at your option) any later version. |
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| 21 | % |
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| 22 | % UVMAT is distributed in the hope that it will be useful, |
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| 23 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 24 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 25 | % GNU General Public License (see LICENSE.txt) for more details. |
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| 26 | %======================================================================= |
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| 27 | |
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[242] | 28 | function [Xphys,Yphys,Zphys]=phys_XYZ(Calib,X,Y,Zindex) |
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| 29 | %------------------------------------------------------------------------ |
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| 30 | testangle=0; |
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| 31 | test_refraction=0; |
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| 32 | if exist('Zindex','var')&& isequal(Zindex,round(Zindex))&& Zindex>0 && isfield(Calib,'SliceCoord')&&length(Calib.SliceCoord)>=Zindex |
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[745] | 33 | if isfield(Calib, 'SliceAngle') && ~isequal(Calib.SliceAngle,[0 0 0]) && ~isequal(Calib.SliceAngle(Zindex,:),[0 0 0]) |
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[242] | 34 | testangle=1; |
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| 35 | om=norm(Calib.SliceAngle(Zindex,:));%norm of rotation angle in radians |
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| 36 | OmAxis=Calib.SliceAngle(Zindex,:)/om; %unit vector marking the rotation axis |
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| 37 | cos_om=cos(pi*om/180); |
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| 38 | sin_om=sin(pi*om/180); |
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| 39 | coeff=OmAxis(3)*(1-cos_om); |
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| 40 | norm_plane(1)=OmAxis(1)*coeff+OmAxis(2)*sin_om; |
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| 41 | norm_plane(2)=OmAxis(2)*coeff-OmAxis(1)*sin_om; |
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| 42 | norm_plane(3)=OmAxis(3)*coeff+cos_om; |
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[972] | 43 | % Z0=norm_plane*Calib.SliceCoord(Zindex,:)'/norm_plane(3); |
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| 44 | end |
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[242] | 45 | Z0=Calib.SliceCoord(Zindex,3);%horizontal plane z=cte |
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[972] | 46 | % end |
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[242] | 47 | Z0virt=Z0; |
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| 48 | if isfield(Calib,'InterfaceCoord') && isfield(Calib,'RefractionIndex') |
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| 49 | H=Calib.InterfaceCoord(3); |
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| 50 | if H>Z0 |
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| 51 | Z0virt=H-(H-Z0)/Calib.RefractionIndex; %corrected z (virtual object) |
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| 52 | test_refraction=1; |
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| 53 | end |
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| 54 | end |
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| 55 | else |
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| 56 | Z0=0; |
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| 57 | Z0virt=0; |
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| 58 | end |
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| 59 | if ~exist('X','var')||~exist('Y','var') |
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| 60 | Xphys=[]; |
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| 61 | Yphys=[];%default |
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| 62 | return |
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| 63 | end |
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| 64 | %coordinate transform |
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| 65 | if ~isfield(Calib,'fx_fy') |
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| 66 | Calib.fx_fy=[1 1]; |
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| 67 | end |
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| 68 | if ~isfield(Calib,'Tx_Ty_Tz') |
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| 69 | Calib.Tx_Ty_Tz=[0 0 1]; |
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| 70 | end |
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| 71 | if ~isfield(Calib,'Cx_Cy') |
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| 72 | Calib.Cx_Cy=[0 0]; |
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| 73 | end |
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| 74 | if ~isfield(Calib,'kc') |
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| 75 | Calib.kc=0; |
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| 76 | end |
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| 77 | if isfield(Calib,'R') |
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| 78 | R=(Calib.R)'; |
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| 79 | if testangle |
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| 80 | a=-norm_plane(1)/norm_plane(3); |
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| 81 | b=-norm_plane(2)/norm_plane(3); |
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| 82 | if test_refraction |
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| 83 | a=a/Calib.RefractionIndex; |
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| 84 | b=b/Calib.RefractionIndex; |
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| 85 | end |
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| 86 | R(1)=R(1)+a*R(3); |
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| 87 | R(2)=R(2)+b*R(3); |
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| 88 | R(4)=R(4)+a*R(6); |
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| 89 | R(5)=R(5)+b*R(6); |
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| 90 | R(7)=R(7)+a*R(9); |
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| 91 | R(8)=R(8)+b*R(9); |
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| 92 | end |
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| 93 | Tx=Calib.Tx_Ty_Tz(1); |
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| 94 | Ty=Calib.Tx_Ty_Tz(2); |
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| 95 | Tz=Calib.Tx_Ty_Tz(3); |
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| 96 | f=Calib.fx_fy(1);%dpy=1; sx=1 |
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| 97 | %dpx=Calib.fx_fy(2)/Calib.fx_fy(1); |
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| 98 | Dx=R(5)*R(7)-R(4)*R(8); |
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| 99 | Dy=R(1)*R(8)-R(2)*R(7); |
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| 100 | D0=(R(2)*R(4)-R(1)*R(5)); |
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| 101 | Z11=R(6)*R(8)-R(5)*R(9); |
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| 102 | Z12=R(2)*R(9)-R(3)*R(8); |
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| 103 | Z21=R(4)*R(9)-R(6)*R(7); |
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| 104 | Z22=R(3)*R(7)-R(1)*R(9); |
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| 105 | Zx0=R(3)*R(5)-R(2)*R(6); |
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| 106 | Zy0=R(1)*R(6)-R(3)*R(4); |
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| 107 | A11=R(8)*Ty-R(5)*Tz+Z11*Z0virt; |
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| 108 | A12=R(2)*Tz-R(8)*Tx+Z12*Z0virt; |
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| 109 | A21=-R(7)*Ty+R(4)*Tz+Z21*Z0virt; |
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| 110 | A22=-R(1)*Tz+R(7)*Tx+Z22*Z0virt; |
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| 111 | % X0=Calib.fx_fy(1)*(R(5)*Tx-R(2)*Ty+Zx0*Z0virt); |
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| 112 | % Y0=Calib.fx_fy(2)*(-R(4)*Tx+R(1)*Ty+Zy0*Z0virt); |
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| 113 | X0=(R(5)*Tx-R(2)*Ty+Zx0*Z0virt); |
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| 114 | Y0=(-R(4)*Tx+R(1)*Ty+Zy0*Z0virt); |
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| 115 | %px to camera: |
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| 116 | % Xd=dpx*(X-Calib.Cx_Cy(1)); % sensor coordinates |
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| 117 | % Yd=(Y-Calib.Cx_Cy(2)); |
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| 118 | Xd=(X-Calib.Cx_Cy(1))/Calib.fx_fy(1); % sensor coordinates |
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| 119 | Yd=(Y-Calib.Cx_Cy(2))/Calib.fx_fy(2); |
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| 120 | dist_fact=1+Calib.kc*(Xd.*Xd+Yd.*Yd);%/(f*f); %distortion factor |
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| 121 | Xu=Xd./dist_fact;%undistorted sensor coordinates |
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| 122 | Yu=Yd./dist_fact; |
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| 123 | denom=Dx*Xu+Dy*Yu+D0; |
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| 124 | Xphys=(A11.*Xu+A12.*Yu+X0)./denom;%world coordinates |
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| 125 | Yphys=(A21.*Xu+A22.*Yu+Y0)./denom; |
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| 126 | if testangle |
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| 127 | Zphys=Z0+a*Xphys+b*Yphys; |
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| 128 | else |
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| 129 | Zphys=Z0; |
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| 130 | end |
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| 131 | else |
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| 132 | Xphys=-Calib.Tx_Ty_Tz(1)+X/Calib.fx_fy(1); |
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| 133 | Yphys=-Calib.Tx_Ty_Tz(2)+Y/Calib.fx_fy(2); |
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| 134 | end |
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| 135 | |
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| 136 | %'px_XYZ': transform phys coordinates to image coordinates (px) |
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| 137 | % |
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[811] | 138 | % OUTPUT: |
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[242] | 139 | % X,Y: array of coordinates in the image cooresponding to the input physical positions |
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| 140 | % (origin at lower leftcorner, unit=pixel) |
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| 141 | |
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| 142 | % INPUT: |
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| 143 | % Calib: structure containing the calibration parameters (read from the ImaDoc .xml file) |
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| 144 | % Xphys, Yphys: array of x,y physical coordinates |
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| 145 | % [Z0]: corresponding array of z physical coordinates (0 by default) |
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