source: trunk/src/plot_field.m @ 88

Last change on this file since 88 was 88, checked in by sommeria, 14 years ago

plot_field: test for multicomponent image (-> errormsg)
creat_grid: possibility of changing the figure name (for detect_grid)
geometry_calib: detect_grid improved (range of search adjusted from grid mesh)

bug repaired in translate points

uvmat: bug repair: dela with the case with several get_field GUI opened

File size: 48.8 KB
Line 
1%'plot_field': plot any field with the structure defined in the uvmat package
2%------------------------------------------------------------------------
3%
4%  This function is used by uvmat to plot fields. It automatically chooses the representation
5% appropriate to the input field structure:
6%     2D vector fields are represented by arrows, 2D scalar fiedlds by grey scale images or contour plots, 1D fields are represented by usual plot with (abscissa, ordinate).
7%  The input field structure is first tested by check_field_structure.m,
8%  then split into blocks of related variables  by find_field_indices.m.
9%  The dimensionality of each block is obtained  by this fuction
10%  considering the presence of variables with the attribute .Role='coord_x'
11%  and/or coord_y and/or coord_z (case of unstructured coordinates), or
12%  dimension variables (case of matrices).
13%
14% function [PlotType,PlotParamOut,haxes]= plot_field(Data,haxes,PlotParam,htext,PosColorbar)
15%
16% OUPUT:
17% PlotType: type of plot: 'text','line'(curve plot),'plane':2D view,'volume'
18% PlotParamOut: structure, representing the updated  plotting parameters, in case of automatic scaling
19% haxes: handle of the plotting axis, when a new figure is created.
20%
21%INPUT
22%    Data:   structure describing the field to plot
23%         (optional) .ListGlobalAttribute: cell listing the names of the global attributes
24%                    .Att_1,Att_2... : values of the global attributes
25%         (requested)  .ListVarName: list of variable names to select (cell array of  char strings {'VarName1', 'VarName2',...} )
26%         (requested)  .VarDimName: list of dimension names for each element of .ListVarName (cell array of string cells)
27%                      .VarAttribute: cell of attributes for each element of .ListVarName (cell array of structures of the form VarAtt.key=value)
28%         (requested) .Var1, .Var2....: variables (Matlab arrays) with names listed in .ListVarName
29
30%            Variable attribute .Role :
31%    The only variable attribute used for plotting purpose is .Role which can take
32%    the values
33        %       Role = 'scalar':  (default) represents a scalar field
34        %            = 'coord_x', 'coord_y',  'coord_z': represents a separate set of
35        %                        unstructured coordinate x, y  or z
36        %            = 'vector': represents a vector field whose number of components
37        %                is given by the last dimension (called 'nb_dim')
38        %            = 'vector_x', 'vector_y', 'vector_z'  :represents the x, y or z  component of a vector 
39        %            = 'warnflag' : provides a warning flag about the quality of data in a 'Field', default=0, no warning
40        %            = 'errorflag': provides an error flag marking false data,
41        %                   default=0, no error. Different non zero values can represent different criteria of elimination.
42
43
44%         additional elements characterizing the projection object (should not be necessary)--
45%            Data.Style : style of projection object
46%            Data.XObject,.YObject: set of coordinates defining the object position;
47%            Data.ProjMode=type of projection ;
48%            Data.ProjAngle=angle of projection;
49%            Data.DX,.DY,.DZ=increments;
50%            Data.MaxY,MinY: min and max Y
51
52%   haxes: handle of the plotting axes to update with the new plot. If this input is absent or not a valid axes handle, a new figure is created.
53%
54%   PlotParam: parameters for plotting, as read on the uvmat interface (by function 'read_plot_param.m')
55%     .FixedLimits:=0 (default) adjust axes limit to the X,Y data, =1: preserves the previous axes limits
56%     .Auto_xy: =0 (default): kepp 1 to 1 aspect ratio for x and y scales, =1: automatic adjustment of the graph
57%            --scalars--
58%    .Scalar.MaxA: upper bound (saturation color) for the scalar representation, max(field) by default
59%    .Scalar.MinA: lower bound (saturation) for the scalar representation, min(field) by default
60%    .Scalar.AutoScal: =1 (default) lower and upper bounds of the scalar representation set to the min and max of the field
61%               =0 lower and upper bound imposed by .AMax and .MinA
62%    .Scalar.BW= 1 black and white representation imposed, =0 by default.
63%    .Scalar.Contours= 1: represent scalars by contour plots (Matlab function 'contour'); =0 by default
64%    .IncrA : contour interval
65%            -- vectors--
66%    .Vectors.VecScale: scale for the vector representation
67%    .Vectors.AutoVec: =0 (default) automatic length for vector representation, =1: length set by .VecScale
68%    .Vectors.HideFalse= 0 (default) false vectors represented in magenta, =1: false vectors not represented;
69%    .Vectors.HideWarning= 0 (default) vectors marked by warnflag~=0 marked in black, 1: no warning representation;
70%    .Vectors.decimate4 = 0 (default) all vectors reprtesented, =1: half of  the vectors represented along each coordinate
71%         -- vector color--
72%    .Vectors.ColorCode= 'black','white': imposed color  (default ='blue')
73%                        'rgb', : three colors red, blue, green depending
74%                        on thresholds .colcode1 and .colcode2 on the input  scalar value (C)
75%                        'brg': like rgb but reversed color order (blue, green, red)
76%                        '64 colors': continuous color from blue to red (multijet)
77%    .Vectors.colcode1 : first threshold for rgb, first value for'continuous'
78%    .Vectors.colcode2 : second threshold for rgb, last value (saturation) for 'continuous'
79%    .Vectors.FixedCbounds;  =0 (default): the bounds on C representation are min and max, =1: they are fixed by .Minc and .MaxC
80%    .Vectors.MinC = imposed minimum of the scalar field used for vector color;
81%    .Vectors.MaxC = imposed maximum of the scalar field used for vector color;
82%
83%
84% PosColorbar: if not empty, display a colorbar for B&W images
85%               imposed position of the colorbar (ex [0.821 0.471 0.019 0.445])
86%
87%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
88%  Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org.
89%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
90%     This file is part of the toolbox UVMAT.
91%
92%     UVMAT is free software; you can redistribute it and/or modify
93%     it under the terms of the GNU General Public License as published by
94%     the Free Software Foundation; either version 2 of the License, or
95%     (at your option) any later version.
96%
97%     UVMAT is distributed in the hope that it will be useful,
98%     but WITHOUT ANY WARRANTY; without even the implied warranty of
99%     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
100%     GNU General Public License (file UVMAT/COPYING.txt) for more details.
101%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
102
103function [PlotType,PlotParamOut,haxes]= plot_field(Data,haxes,PlotParam,htext,PosColorbar)
104% TODO:
105% use htext: handles of the text edit box (uicontrol)
106% introduce PlotParam.Hold: 'on' or 'off' (for curves)
107 
108%default output
109if ~exist('PlotParam','var'),PlotParam=[];end;
110if ~exist('htext','var'),htext=[];end;
111if ~exist('PosColorbar','var'),PosColorbar=[];end;
112PlotType='text'; %default
113PlotParamOut=PlotParam;%default
114
115% check input structure
116[Data,errormsg]=check_field_structure(Data);
117
118if ~isempty(errormsg)
119    msgbox_uvmat('ERROR',['input of plot_field/check_field_structure: ' errormsg])
120    display(['input of plot_field/check_field_structure:: ' errormsg])
121    return
122end
123
124testnewfig=1;%test to create a new figure (default)
125testzoomaxes=0;%test for the existence of a zoom secondary figure attached to the plotting axes
126if exist('haxes','var')
127    if ishandle(haxes)
128        if isequal(get(haxes,'Type'),'axes')
129            axes(haxes)
130            testnewfig=0;
131            AxeData=get(haxes,'UserData');
132            if isfield(AxeData,'ZoomAxes')&& ishandle(AxeData.ZoomAxes)
133                if isequal(get(AxeData.ZoomAxes,'Type'),'axes')
134                    testzoomaxes=1;
135                    zoomaxes=AxeData.ZoomAxes;
136                end
137            end
138        end
139    end
140end
141if testnewfig% create a new figure and axes if the plotting axes does not exist
142    hfig=figure;
143    if isfield(Data,'IndexObj')&isfield(Data,'Style')&isfield(Data,'ProjMode')
144        figname=[num2str(Data.IndexObj) '-' Data.Style];
145        set(hfig,'Name',figname)
146    end
147    testhandle=0;
148    if isfield(PlotParam,'text_display_1')& ishandle(PlotParam.text_display_1)
149        set(hfig,'UserData',PlotParam)
150        testhandle=1;
151    end
152    set(hfig,'Units','normalized')
153    set(hfig,'WindowButtonDownFcn','mouse_down')
154    %set(hfig,'WindowButtonMotionFcn',{'mouse_motion',PlotParam})%set mouse action function
155    set(hfig,'WindowButtonMotionFcn','mouse_motion')%set mouse action function
156    set(hfig,'WindowButtonUpFcn','mouse_up')%set mouse action function
157    haxes=axes;
158    set(haxes,'position',[0.13,0.2,0.775,0.73])
159else
160    hstack=findobj(allchild(0),'Type','figure');%current stack order of figures in matlab
161end
162if isfield(PlotParam,'text_display_1')& ishandle(PlotParam.text_display_1)
163    PlotParam=read_plot_param(PlotParam);   
164end
165if testnewfig
166  PlotParam.NextPlot='add'; %parameter for plot_profile and plot_hist
167end
168if isfield(PlotParam,'Auto_xy') && isequal(PlotParam.Auto_xy,1)
169    set(haxes,'DataAspectRatioMode','auto')%automatic aspect ratio
170end
171
172% check the cells of fields :
173testnbdim=1;
174[CellVarIndex,NbDim,VarType,errormsg]=find_field_indices(Data);
175
176if ~isempty(errormsg)
177    msgbox_uvmat('ERROR',['input of plot_field/find_field_indices: ' errormsg])
178    display(['input of plot_field: ' errormsg])
179    return
180end
181if ~isfield(Data,'NbDim') %& ~isfield(Data,'Style')%determine the space dimensionb if not defined: choose the kind of plot
182    [Data.NbDim,imax]=max(NbDim);
183end
184if isequal(Data.NbDim,0)
185        AxeData=plot_text(Data,htext);
186        PlotType='text';
187elseif isequal(Data.NbDim,1)
188    [AxeData,haxes]=plot_profile(Data,CellVarIndex,VarType,haxes,PlotParam);%
189    if testzoomaxes
190        [AxeData,zoomaxes,PlotParamOut]=plot_profile(Data,CellVarIndex,VarType,zoomaxes,PlotParam);
191        AxeData.ZoomAxes=zoomaxes;
192    end
193    PlotType='line';
194elseif isequal(Data.NbDim,2)
195    ind_select=find(NbDim>=2);
196    if numel(ind_select)>2
197        msgbox_uvmat('ERROR','more than two fields to map')
198        display('more than two fields to map')
199        return
200    end
201    [AxeData,haxes,PlotParamOut,PlotType]=plot_plane(Data,CellVarIndex(ind_select),VarType(ind_select),haxes,PlotParam,htext,PosColorbar);
202    if testzoomaxes
203        [AxeData,zoomaxes,PlotParamOut]=plot_plane(Data,CellVarIndex(ind_select),VarType(ind_select),zoomaxes,PlotParam,1,PosColorbar);
204        AxeData.ZoomAxes=zoomaxes;
205    end
206elseif isequal(Data.NbDim,3)
207    msgbox_uvmat('ERROR','volume plot not implemented yet')
208    return
209else
210    testnbdim=0;
211end
212
213%display (or delete) error message
214htext=findobj(haxes,'Tag','hTxt');
215if isfield(Data,'Txt')
216    if isempty(htext)
217        Xlim=get(haxes,'XLim');
218        Ylim=get(haxes,'YLim');
219        htext=text(Xlim(1),(Ylim(1)+Ylim(2))/2,Data.Txt,'Tag','hTxt','Color','r');
220        set(htext,'Interpreter','none')
221    else
222        set(htext,'String',Data.Txt)
223    end
224elseif ~isempty(htext)
225    delete(htext)
226end
227
228% set graph aspect ratio
229
230
231set(haxes,'UserData',AxeData)
232if ~testnewfig
233set(0,'Children',hstack);%put back the initial figure stack after plot creation
234%set(haxes,'Tag','uvmat');
235end
236
237
238%-------------------------------------------------------------------
239function hdisplay=plot_text(FieldData,hdisplay_in)
240%-------------------------------------------------------------------
241if exist('hdisplay_in','var') & ishandle(hdisplay_in) & isequal(get(hdisplay_in,'Type'),'uicontrol')
242    hdisplay=hdisplay_in;
243else
244    figure;%create new figure
245    hdisplay=uicontrol('Style','edit', 'Units','normalized','Position', [0 0 1 1],'Max',2,'FontName','monospaced');
246end
247   
248ff=fields(FieldData);%list of field names
249vv=struct2cell(FieldData);%list of field values
250
251for icell=1:length(vv)
252    Tabcell{icell,1}=ff{icell};
253    ss=vv{icell};
254    sizss=size(ss);
255    if isnumeric(ss)
256        if sizss(1)<=1 & length(ss)<5
257            displ{icell}=num2str(ss);
258        else
259            displ{icell}=[class(ss) ', size ' num2str(size(ss))];
260        end
261    elseif ischar(ss)
262        displ{icell}=ss;
263    elseif iscell(ss)
264        sizcell=size(ss);
265        if sizcell(1)==1 & length(sizcell)==2 %line cell
266           ssline='{''';
267           for icolumn=1:sizcell(2)
268               if isnumeric(ss{icolumn})
269                   if size(ss{icolumn},1)<=1 & length(ss{icolumn})<5
270                      sscolumn=num2str(ss{icolumn});%line vector
271                   else
272                      sscolumn=[class(ss{icolumn}) ', size ' num2str(size(ss{icolumn}))];
273                   end
274               elseif ischar(ss{icolumn})
275                   sscolumn=ss{icolumn};
276               else
277                   sscolumn=class(ss{icolumn});
278               end
279               if icolumn==1
280                   ssline=[ssline sscolumn];
281               else
282                   ssline=[ssline ''',''' sscolumn];
283               end
284           end
285           displ{icell}=[ssline '''}'];
286        else
287           displ{icell}=[class(ss) ', size ' num2str(sizcell)];
288        end
289    else
290        displ{icell}=class(ss);
291    end
292    Tabcell{icell,2}=displ{icell};
293end
294Tabchar=cell2tab(Tabcell,': ');
295set(hdisplay,'String', Tabchar)
296
297
298%-------------------------------------------------------------------
299function [AxeData,haxes]=plot_profile(data,CellVarIndex,VarType,haxes,PlotParam)
300%-------------------------------------------------------------------
301%axes(haxes)
302hfig=get(haxes,'parent');
303AxeData=data;
304
305ColorOrder=[1 0 0;0 0.5 0;0 0 1;0 0.75 0.75;0.75 0 0.75;0.75 0.75 0;0.25 0.25 0.25];
306set(haxes,'ColorOrder',ColorOrder)
307if isfield(PlotParam,'NextPlot')
308    set(haxes,'NextPlot',PlotParam.NextPlot)
309end
310% adjust the size of the plot to include the whole field,
311if isfield(PlotParam,'FixedLimits') && isequal(PlotParam.FixedLimits,1)  %adjust the graph limits*
312    set(haxes,'XLimMode', 'manual')
313    set(haxes,'YLimMode', 'manual')
314else
315    set(haxes,'XLimMode', 'auto')
316    set(haxes,'YLimMode', 'auto')
317end
318legend_str={};
319
320%initiates string of the plot command
321plotstr='hhh=plot(';
322textmean={};
323abscissa_name='';
324coord_x_index=[];
325test_newplot=1;
326hh=findobj(haxes,'tag','plot_line');
327num_curve=numel(hh);
328icurve=0;
329for icell=1:length(CellVarIndex)
330    testfalse=0;
331    VarIndex=CellVarIndex{icell};%  indices of the selected variables in the list data.ListVarName
332    DimCell=data.VarDimName{VarIndex(1)};
333    if ischar(DimCell)
334        DimCell={DimCell};
335    end
336    XName=DimCell{1}; %first dimension considered as abscissa
337    if ~isempty(VarType{icell}.coord_x)
338        coord_x_index=VarType{icell}.coord_x;
339    else
340        coord_x_index_cell=VarType{icell}.coord(1);
341        if isequal(coord_x_index_cell,0)
342            continue  % the cell has no abscissa, skip it
343        end
344        if ~isempty(coord_x_index)&&~isequal(coord_x_index_cell,coord_x_index)
345            continue %all the selected variables must have the same first dimension
346        else
347            coord_x_index=coord_x_index_cell;
348        end
349    end
350    testplot=ones(size(data.ListVarName));%default test for plotted variables
351    testcoordvar=0;
352    charplot_0='''-''';%default
353    if isfield(data,'ObjectProjMode')& isequal(data.ObjectProjMode,'projection')
354        charplot_0='+';
355    end
356    xtitle=''; 
357   
358    xtitle=data.ListVarName{coord_x_index};
359    eval(['coord_x{icell}=data.' data.ListVarName{coord_x_index} ';']);%coordinate variable set as coord_x
360    if isfield(data,'VarAttribute')&& numel(data.VarAttribute)>=coord_x_index && isfield(data.VarAttribute{coord_x_index},'units')
361         xtitle=[xtitle '(' data.VarAttribute{coord_x_index}.units ')'];
362    end
363    eval(['coord_x{icell}=data.' data.ListVarName{coord_x_index} ';']);%coordinate variable set as coord_x
364    testcoordvar=1;
365    testplot(coord_x_index)=0;
366    if ~isempty(VarType{icell}.ancillary')
367            testplot(VarType{icell}.ancillary)=0;
368    end
369    if ~isempty(VarType{icell}.warnflag')
370            testplot(VarType{icell}.warnflag)=0;
371    end
372 
373    if isfield(data,'VarAttribute')
374        VarAttribute=data.VarAttribute;
375        for ivar=1:length(VarIndex)
376             if length(VarAttribute)>=VarIndex(ivar) & isfield(VarAttribute{VarIndex(ivar)},'long_name')
377                 plotname{VarIndex(ivar)}=VarAttribute{VarIndex(ivar)}.long_name;
378             else
379                 plotname{VarIndex(ivar)}=data.ListVarName{VarIndex(ivar)};%name for display in plot A METTRE
380             end
381        end
382    end 
383%     test_newplot=0;%default
384%     if num_curve>=icurve+numel(find(testplot(VarIndex)))%update existing curves
385%         if ~isempty(VarType{icell}.discrete')
386%             charplot_0='+';
387%             LineStyle='none';
388%         else
389%             charplot_0='none';
390%             LineStyle='-';
391%         end
392%         for ivar=1:length(VarIndex)
393%             if testplot(VarIndex(ivar))
394%                 icurve=icurve+1;
395%                 VarName=data.ListVarName{VarIndex(ivar)};
396%                 eval(['data.' VarName '=squeeze(data.' VarName ');'])
397%                 set(hh(icurve),'LineStyle',LineStyle)
398%                 set(hh(icurve),'Marker',charplot_0)
399%                 set(hh(icurve),'XData',coord_x{icell})
400%                 eval(['yy=data.' VarName ';'])
401%                 set(hh(icurve),'YData',yy);
402%             end
403%         end
404%     else% new plot
405        if ~isempty(VarType{icell}.discrete')
406            charplot_0='''+''';
407        else
408            charplot_0='''-''';
409        end
410        for ivar=1:length(VarIndex)
411            if testplot(VarIndex(ivar))
412                VarName=data.ListVarName{VarIndex(ivar)};
413                eval(['data.' VarName '=squeeze(data.' VarName ');'])
414%                 if isequal(VarName,'A')
415%                     charplot='''-''';
416%                 else
417%                     charplot=charplot_0;
418%                 end
419                plotstr=[plotstr 'coord_x{' num2str(icell) '},data.' VarName ',' charplot_0 ','];
420                eval(['nbcomponent2=size(data.' VarName ',2);']);
421                eval(['nbcomponent1=size(data.' VarName ',1);']);
422                if numel(coord_x{icell})==2
423                    coord_x{icell}=linspace(coord_x{icell}(1),coord_x{icell}(2),nbcomponent1);
424                end
425                eval(['varmean=mean(double(data.' VarName '));']);%mean value
426                textmean=[textmean; {[VarName 'mean= ' num2str(varmean,4)]}];
427                if nbcomponent1==1| nbcomponent2==1
428                    legend_str=[legend_str {VarName}]; %variable with one component
429                else  %variable with severals  components
430                    for ic=1:min(nbcomponent1,nbcomponent2)
431                        legend_str=[legend_str [VarName '_' num2str(ic)]]; %variable with severals  components
432                    end                                                   % labeled by their index (e.g. color component)
433                end
434            end
435        end
436%     end
437end
438if test_newplot && ~isequal(plotstr,'hhh=plot(')
439    plotstr=[plotstr '''tag'',''plot_line'');'];
440                %execute plot (instruction  plotstr) 
441    eval(plotstr)
442   
443                %%%%%
444    grid(haxes, 'on')
445    hxlabel=xlabel(xtitle);
446    set(hxlabel,'Interpreter','none')% desable tex interpreter
447    if length(legend_str)>=1
448        hylabel=ylabel(legend_str{end});
449        set(hylabel,'Interpreter','none')% desable tex interpreter
450    end
451    if ~isempty(legend_str)
452        hlegend=findobj(hfig,'Tag','legend');
453        if isempty(hlegend)
454            hlegend=legend(legend_str);
455            txt=ver;
456            Release=txt(1).Release;
457            relnumb=str2num(Release(3:4));
458            if relnumb >= 14
459                set(hlegend,'Interpreter','none')% desable tex interpreter
460            end
461        else
462            legend_old=get(hlegend,'String');
463            if isequal(size(legend_old,1),size(legend_str,1))&~isequal(legend_old,legend_str)
464                set(hlegend,'String',[legend_old legend_str]);
465            end
466        end
467    end
468    title_str='';
469    if isfield(data,'filename')
470       [Path, title_str, ext]=fileparts(data.filename);
471       title_str=[title_str ext];
472    end
473    if isfield(data,'Action')
474        if ~isequal(title_str,'')
475            title_str=[title_str ', '];
476        end
477        title_str=[title_str data.Action];
478    end
479    htitle=title(title_str);
480    txt=ver;
481    Release=txt(1).Release;
482    relnumb=str2num(Release(3:4));
483    if relnumb >= 14
484        set(htitle,'Interpreter','none')% desable tex interpreter
485    end
486    % A REPRENDRE Mean
487%         hlist=findobj(gcf,'Style','listbox','Tag','liststat');
488%         if isempty(hlist)
489%             'text'
490%             textmean
491%             set(gca,'position',[0.13,0.2,0.775,0.73])
492%             uicontrol('Style','popupmenu','Position',[20 20 200 20],'String',textmean,'Tag','liststat');
493%         else
494%             set(hlist(1),'String',textmean)
495%         end
496end
497
498
499%-------------------------------------------------------------------
500function [AxeData,haxes,PlotParamOut,PlotType]=plot_plane(Data,CellVarIndex,VarTypeCell,haxes,PlotParam,htext,PosColorbar)
501%-------------------------------------------------------------------
502grid(haxes, 'off')
503%default plotting parameters
504PlotType='plane';%default
505if ~exist('PlotParam','var')
506    PlotParam=[];
507end
508if ~isfield(PlotParam,'Scalar')
509    PlotParam.Scalar=[];
510end
511if ~isfield(PlotParam,'Vectors')
512    PlotParam.Vectors=[];
513end
514PlotParamOut=PlotParam;%default
515
516%plotting axes
517hfig=get(haxes,'parent');
518hcol=findobj(hfig,'Tag','Colorbar'); %look for colorbar axes
519hima=findobj(haxes,'Tag','ima');% search existing image in the current axes
520AxeData=get(haxes,'UserData'); %default
521if ~isstruct(AxeData)% AxeData must be a structure
522    AxeData=[];
523end
524AxeData.NbDim=2;
525if isfield(Data,'ObjectCoord')
526    AxeData.ObjectCoord=Data.ObjectCoord;
527end
528
529test_ima=0; %default: test for image or map plot
530test_vec=0; %default: test for vector plots
531test_black=0;
532test_false=0;
533test_C=0;
534XName='';
535x_units='';
536YName='';
537y_units='';
538for icell=1:length(CellVarIndex) % length(CellVarIndex) =1 or 2 (from the calling function)
539%     VarIndex=CellVarIndex{icell};
540    VarType=VarTypeCell{icell};
541    ivar_X=VarType.coord_x; % defines (unique) index for the variable representing unstructured x coordinate (default =[])
542    ivar_Y=VarType.coord_y; % defines (unique)index for the variable representing unstructured y coordinate (default =[])
543    ivar_U=VarType.vector_x; % defines (unique) index for the variable representing x vector component (default =[])
544    ivar_V=VarType.vector_y; % defines (unique) index for the variable representing y vector component (default =[])
545    ivar_C=[VarType.scalar VarType.image VarType.color VarType.ancillary]; %defines index (indices) for the scalar or ancillary fields
546    if numel(ivar_C)>1
547        msgbox_uvmat('ERROR','error in plot_field: too many scalar inputs')
548        return
549    end
550    ivar_F=VarType.warnflag; %defines index (unique) for warning flag variable
551    ivar_FF=VarType.errorflag; %defines index (unique) for error flag variable
552    ind_coord=find(VarType.coord);
553    if numel(ind_coord)==2
554        VarType.coord=VarType.coord(ind_coord);
555    end
556    idim_Y=[]; 
557    test_grid=0;
558    if ~isempty(ivar_U) && ~isempty(ivar_V)% vector components detected
559        if test_vec
560            msgbox_uvmat('ERROR','error in plot_field: attempt to plot two vector fields')
561            return
562        else
563            test_vec=1;
564            eval(['vec_U=Data.' Data.ListVarName{ivar_U} ';'])
565            eval(['vec_V=Data.' Data.ListVarName{ivar_V} ';'])
566            if ~isempty(ivar_X) && ~isempty(ivar_Y)% 2D field (with unstructured coordinates or structured ones (then ivar_X and ivar_Y empty)     
567                eval(['vec_X=Data.' Data.ListVarName{ivar_X} ';'])
568                eval(['vec_Y=Data.' Data.ListVarName{ivar_Y} ';'])
569            elseif numel(VarType.coord)==2 & VarType.coord~=[0 0];%coordinates defines by dimension variables
570                eval(['y=Data.' Data.ListVarName{VarType.coord(1)} ';'])
571                eval(['x=Data.' Data.ListVarName{VarType.coord(2)} ';'])
572                if numel(y)==2 % y defined by first and last values on aregular mesh
573                    y=linspace(y(1),y(2),size(vec_U,1));
574                end
575                if numel(x)==2 % y defined by first and last values on aregular mesh
576                    x=linspace(x(1),x(2),size(vec_U,2));
577                end
578                [vec_X,vec_Y]=meshgrid(x,y); 
579            else
580                msgbox_uvmat('ERROR','error in plot_field: invalid coordinate definition for vector field')
581                return
582            end
583            if ~isempty(ivar_C)
584                 eval(['vec_C=Data.' Data.ListVarName{ivar_C} ';']) ;
585                 vec_C=reshape(vec_C,1,numel(vec_C));
586                 test_C=1;
587            end
588            if ~isempty(ivar_F)%~(isfield(PlotParam.Vectors,'HideWarning')&& isequal(PlotParam.Vectors.HideWarning,1))
589                if test_vec
590                    eval(['vec_F=Data.' Data.ListVarName{ivar_F} ';']) % warning flags for  dubious vectors
591                    if  ~(isfield(PlotParam.Vectors,'HideWarning') && isequal(PlotParam.Vectors.HideWarning,1))
592                        test_black=1;
593                    end
594                end
595            end
596            if ~isempty(ivar_FF) %&& ~test_false
597                if test_vec% TODO: deal with FF for structured coordinates
598                    eval(['vec_FF=Data.' Data.ListVarName{ivar_FF} ';']) % flags for false vectors
599                end
600            end
601        end
602    elseif ~isempty(ivar_C) %scalar or image
603        if test_ima
604             msgbox_uvmat('ERROR','attempt to plot two scalar fields or images')
605            return
606        end
607        eval(['A=squeeze(Data.' Data.ListVarName{ivar_C} ');']) ;% scalar represented as color image
608        test_ima=1;
609        if ~isempty(ivar_X) && ~isempty(ivar_Y)% 2D field (with unstructured coordinates or structured ones (then ivar_X and ivar_Y empty)
610            XName=Data.ListVarName{ivar_X};
611            YName=Data.ListVarName{ivar_Y};
612            eval(['AX=Data.' XName ';'])
613            eval(['AY=Data.' YName ';'])
614            [A,AX,AY]=proj_grid(AX',AY',A',[],[],'np>256');  % interpolate on a grid 
615            if isfield(Data,'VarAttribute')
616                if numel(Data.VarAttribute)>=ivar_X & isfield(Data.VarAttribute{ivar_X},'units')
617                    x_units=['(' Data.VarAttribute{ivar_X}.units ')'];
618                end
619                if numel(Data.VarAttribute)>=ivar_Y & isfield(Data.VarAttribute{ivar_Y},'units')
620                    y_units=['(' Data.VarAttribute{ivar_Y}.units ')'];
621                end
622            end       
623        elseif numel(VarType.coord)==2 %structured coordinates
624            XName=Data.ListVarName{VarType.coord(2)};
625            YName=Data.ListVarName{VarType.coord(1)};
626            eval(['AY=Data.' Data.ListVarName{VarType.coord(1)} ';'])
627            eval(['AX=Data.' Data.ListVarName{VarType.coord(2)} ';'])
628            test_interp_X=0; %default, regularly meshed X coordinate
629            test_interp_Y=0; %default, regularly meshed Y coordinate
630            if isfield(Data,'VarAttribute')
631                if numel(Data.VarAttribute)>=VarType.coord(2) & isfield(Data.VarAttribute{VarType.coord(2)},'units')
632                    x_units=['(' Data.VarAttribute{VarType.coord(2)}.units ')'];
633                end
634                if numel(Data.VarAttribute)>=VarType.coord(1) & isfield(Data.VarAttribute{VarType.coord(1)},'units')
635                    y_units=['(' Data.VarAttribute{VarType.coord(1)}.units ')'];
636                end
637            end 
638            if numel(AY)>2
639                DAY=diff(AY);
640                DAY_min=min(DAY);
641                DAY_max=max(DAY);
642                if sign(DAY_min)~=sign(DAY_max);% =1 for increasing values, 0 otherwise
643                     errormsg=['errror in plot_field.m: non monotonic dimension variable # ' ListVarName{VarType.coord(1)} ];
644                      return
645                end
646                test_interp_Y=(DAY_max-DAY_min)> 0.0001*abs(DAY_max);
647            end
648            if numel(AX)>2
649                DAX=diff(AX);
650                DAX_min=min(DAX);
651                DAX_max=max(DAX);
652                if sign(DAX_min)~=sign(DAX_max);% =1 for increasing values, 0 otherwise
653                     errormsg=['errror in plot_field.m: non monotonic dimension variable # ' ListVarName{VarType.coord(2)} ];
654                      return
655                end
656                test_interp_X=(DAX_max-DAX_min)> 0.0001*abs(DAX_max);
657            end 
658            if test_interp_Y         
659                npxy(1)=max([256 floor((AY(end)-AY(1))/DAY_min) floor((AY(end)-AY(1))/DAY_max)]);
660                yI=linspace(AY(1),AY(end),npxy(1));
661                if ~test_interp_X
662                    xI=linspace(AX(1),AX(end),size(A,2));%default
663                    AX=xI;
664                end
665            end
666            if test_interp_X 
667                npxy(1)=max([256 floor((AX(end)-AX(1))/DAX_min) floor((AX(end)-AX(1))/DAX_max)]);
668                xI=linspace(AX(1),AX(end),npxy(2));   
669                if ~test_interp_Y
670                   yI=linspace(AY(1),AY(end),size(A,1));
671                   AY=yI;
672                end
673            end
674            if test_interp_X || test_interp_Y               
675                [AX2D,AY2D]=meshgrid(AX,AY);
676                A=interp2(AX2D,AY2D,double(A),xI,yI');
677            end
678            AX=[AX(1) AX(end)];% keep only the lower and upper bounds for image represnetation
679            AY=[AY(1) AY(end)];
680        else
681            msgbox_uvmat('ERROR','error in plot_field: invalid coordinate definition ')
682            return
683        end
684          x_label=[Data.ListVarName{ivar_X} '(' x_units ')'];
685    end       
686%     if isfield(Data,'VarAttribute')
687%         VarAttribute=Data.VarAttribute;
688%     end   
689end
690
691%%%%%%%%%%%%%%%%%%%%%   image or scalar plot %%%%%%%%%%%%%%%%%%%%%%%%%%
692
693if ~isfield(PlotParam.Scalar,'Contours')
694    PlotParam.Scalar.Contours=0; %default
695end
696PlotParamOut=PlotParam; %default
697if test_ima
698    % distinguish B/W and color images
699    np=size(A);%size of image
700    siz=numel(np);
701    if siz>3
702        msgbox_uvmat('ERROR','unrecognized scalar type ')
703            return
704    end
705    if siz==3
706        if np(3)==1
707            siz=2;%B W image
708        elseif np(3)==3
709            siz=3;%color image
710        else
711             msgbox_uvmat('ERROR',['unrecognized scalar type: ' num2str(np(3)) ' color components'])
712            return
713        end
714    end
715    %set the color map
716    if siz==2 %for black and white images
717        if ~isfield(PlotParam.Scalar,'AutoScal')
718            PlotParam.Scalar.AutoScal=0;%default
719        end
720        if ~isfield(PlotParam.Scalar,'MinA')
721            PlotParam.Scalar.MinA=[];%default
722        end
723        if ~isfield(PlotParam.Scalar,'MaxA')
724            PlotParam.Scalar.MaxA=[];%default
725        end
726        if isequal(PlotParam.Scalar.AutoScal,0)|isempty(PlotParam.Scalar.MinA)|~isa(PlotParam.Scalar.MinA,'double')  %correct if there is no numerical data in edit box
727            MinA=double(min(min(A)));
728        else
729            MinA=PlotParam.Scalar.MinA; 
730        end;
731        if isequal(PlotParam.Scalar.AutoScal,0)|isempty(PlotParam.Scalar.MaxA)|~isa(PlotParam.Scalar.MaxA,'double') %correct if there is no numerical data in edit box
732            MaxA=double(max(max(A)));
733        else
734            MaxA=PlotParam.Scalar.MaxA; 
735        end;
736        PlotParamOut.Scalar.MinA=MinA;
737        PlotParamOut.Scalar.MaxA=MaxA;
738        axes(haxes)
739        if isequal(PlotParam.Scalar.Contours,1)
740            if ~isempty(hima) & ishandle(hima)
741                delete(hima)
742            end
743            if ~isfield(PlotParam.Scalar,'IncrA')
744                PlotParam.Scalar.IncrA=[];
745            end
746            if isempty(PlotParam.Scalar.IncrA)% | PlotParam.Scalar.AutoScal==0
747                cont=colbartick(MinA,MaxA);
748                intercont=cont(2)-cont(1);%default
749                PlotParamOut.Scalar.IncrA=intercont;
750            else
751               intercont=PlotParam.Scalar.IncrA;
752            end
753            B=A;           
754            abscontmin=intercont*floor(MinA/intercont);
755            abscontmax=intercont*ceil(MaxA/intercont);
756            contmin=intercont*floor(min(min(B))/intercont);
757            contmax=intercont*ceil(max(max(B))/intercont);
758            cont_pos_plus=[0:intercont:contmax];
759            cont_pos_min=[double(contmin):intercont:-intercont];
760            cont_pos=[cont_pos_min cont_pos_plus];
761            sizpx=(AX(end)-AX(1))/(np(2)-1);
762            sizpy=(AY(1)-AY(end))/(np(1)-1);
763            x_cont=[AX(1):sizpx:AX(end)]; % pixel x coordinates for image display
764            y_cont=[AY(1):-sizpy:AY(end)]; % pixel x coordinates for image display
765            txt=ver;%version of Matlab
766            Release=txt(1).Release;
767            relnumb=str2num(Release(3:4));
768            if relnumb >= 14
769                    vec=linspace(0,1,(abscontmax-abscontmin)/intercont);%define a greyscale colormap with steps intercont
770                map=[vec' vec' vec'];
771                colormap(map);
772                [var,hcontour]=contour(x_cont,y_cont,B,cont_pos);       
773                set(hcontour,'Fill','on')
774                set(hcontour,'LineStyle','none')
775                hold on
776            end
777            [var_p,hcontour_p]=contour(x_cont,y_cont,B,cont_pos_plus,'k-');
778            hold on
779            [var_m,hcontour_m]=contour(x_cont,y_cont,B,cont_pos_min,':');
780            set(hcontour_m,'LineColor',[1 1 1])
781            hold off
782            caxis([abscontmin abscontmax])
783            colormap(map);
784        end
785        if ~isequal(PlotParam.Scalar.Contours,1)       
786            % rescale the grey levels with min and max, put a grey scale colorbar
787            if (isfield(PlotParam.Scalar,'BW')& (isequal(PlotParam.Scalar.BW,1))|isa(A,'uint8')| isa(A,'uint16'))%images
788                B=A;
789                vec=linspace(0,1,255);%define a linear greyscale colormap
790                map=[vec' vec' vec'];
791                colormap(map);  %grey scale color map
792            else
793                B=A;
794                colormap('default'); % standard faulse colors for div, vort , scalar fields
795            end
796        end
797    else %color images
798        axes(haxes)
799        B=uint8(A);
800        MinA=0;
801        MaxA=255;
802    end
803    if ~isequal(PlotParam.Scalar.Contours,1)
804        %interpolate to increase resolution
805        test_interp=1;
806        if max(np) <= 64
807            npxy=8*np;% increase the resolution 8 times
808        elseif max(np) <= 128
809            npxy=4*np;% increase the resolution 4 times
810        elseif max(np) <= 256
811            npxy=2*np;% increase the resolution 2 times
812        else
813            npxy=np;
814            test_interp=0; % no interpolation done
815        end
816        if test_interp==1%if we interpolate   
817            x=linspace(AX(1),AX(2),np(2));
818            y=linspace(AY(1),AY(2),np(1));
819            [X,Y]=meshgrid(x,y);
820            xi=linspace(AX(1),AX(2),npxy(2));
821            yi=linspace(AY(1),AY(2),npxy(1));
822            B = interp2(X,Y,double(B),xi,yi');
823        end       
824        if isempty(hima)
825            tag=get(haxes,'Tag');
826            hima=imagesc(AX,AY,B,[MinA MaxA]);
827            set(hima,'Tag','ima','HitTest','off')
828            set(haxes,'Tag',tag);%preserve the axes tag (removed by image fct !!!)       
829        else
830            set(hima,'CData',B);
831            if MinA<MaxA
832                caxis([MinA MaxA])
833            else
834                caxis([MinA MinA+1])
835            end
836            set(hima,'XData',AX);
837            set(hima,'YData',AY);
838        end
839    end
840    if ~isstruct(AxeData)
841        AxeData=[];
842    end
843    AxeData.A=A;
844    AxeData.AX=[AX(1) AX(end)];
845    AxeData.AY=[AY(1) AY(end)];
846    test_ima=1;
847    %display the colorbar code for B/W images if Poscolorbar not empty
848    if siz==2 & exist('PosColorbar','var')& ~isempty(PosColorbar)
849        if isempty(hcol)|~ishandle(hcol)
850             hcol=colorbar;%create new colorbar
851        end
852        if length(PosColorbar)==4
853                 set(hcol,'Position',PosColorbar)           
854        end
855        YTick=0;%default
856        if MaxA>MinA
857            if isequal(PlotParam.Scalar.Contours,1)
858                colbarlim=get(hcol,'YLim');
859                scale_bar=(colbarlim(2)-colbarlim(1))/(abscontmax-abscontmin);               
860                YTick=cont_pos(2:end-1);
861                YTick_scaled=colbarlim(1)+scale_bar*(YTick-abscontmin);
862                set(hcol,'YTick',YTick_scaled);
863            elseif (isfield(PlotParam.Scalar,'BW') & isequal(PlotParam.Scalar.BW,1))|isa(A,'uint8')| isa(A,'uint16')%images
864                hi=get(hcol,'children');
865                if iscell(hi)%multiple images in colorbar
866                    hi=hi{1};
867                end
868                set(hi,'YData',[MinA MaxA])
869                set(hi,'CData',[1:256]')
870                set(hcol,'YLim',[MinA MaxA])
871                YTick=colbartick(MinA,MaxA);
872                set(hcol,'YTick',YTick)               
873            else
874                hi=get(hcol,'children');
875                if iscell(hi)%multiple images in colorbar
876                    hi=hi{1};
877                end
878                set(hi,'YData',[MinA MaxA])
879                set(hi,'CData',[1:64]')
880                YTick=colbartick(MinA,MaxA);
881                set(hcol,'YLim',[MinA MaxA])
882                set(hcol,'YTick',YTick)
883            end
884            set(hcol,'Yticklabel',num2str(YTick'));
885        end
886    elseif ishandle(hcol)
887        delete(hcol); %erase existing colorbar if not needed
888    end
889else%no scalar plot
890    if ~isempty(hima) && ishandle(hima)
891        delete(hima)
892    end
893    if ~isempty(hcol)&& ishandle(hcol)
894       delete(hcol)
895    end
896    AxeData.A=[];
897    AxeData.AX=[];
898    AxeData.AY=[];
899    PlotParamOut=rmfield(PlotParamOut,'Scalar');
900end
901
902%%%%%%%%%%%%%%%%%%%%%   vector plot %%%%%%%%%%%%%%%%%%%%%%%%%%
903if test_vec
904   %vector scale representation
905    if size(vec_U,1)==numel(vec_Y) && size(vec_U,2)==numel(vec_X); % x, y  coordinate variables
906        [vec_X,vec_Y]=meshgrid(vec_X,vec_Y);
907    end   
908    vec_X=reshape(vec_X,1,numel(vec_X));%reshape in matlab vectors
909    vec_Y=reshape(vec_Y,1,numel(vec_Y));
910    vec_U=reshape(vec_U,1,numel(vec_U));
911    vec_V=reshape(vec_V,1,numel(vec_V));
912    MinMaxX=max(vec_X)-min(vec_X);
913    MinMaxY=max(vec_Y)-min(vec_Y);
914    AxeData.Mesh=sqrt((MinMaxX*MinMaxY)/length(vec_X));
915    if  ~isfield(PlotParam.Vectors,'AutoVec') || isequal(PlotParam.Vectors.AutoVec,0)|| ~isfield(PlotParam.Vectors,'VecScale')...
916               ||isempty(PlotParam.Vectors.VecScale)||~isa(PlotParam.Vectors.VecScale,'double') %automatic vector scale
917        scale=[];
918        if test_false %remove false vectors
919            indsel=find(AxeData.FF==0);%indsel =indices of good vectors
920        else     
921            indsel=[1:numel(vec_X)];%
922        end
923        if isempty(vec_U)
924            scale=1;
925        else
926            if isempty(indsel)
927                MaxU=max(abs(vec_U));
928                MaxV=max(abs(vec_V));
929            else
930                MaxU=max(abs(vec_U(indsel)));
931                MaxV=max(abs(vec_V(indsel)));
932            end
933            scale=MinMaxX/(max(MaxU,MaxV)*50);
934            PlotParam.Vectors.VecScale=scale;%update the 'scale' display
935        end
936    else
937        scale=PlotParam.Vectors.VecScale;  %impose the length of vector representation
938    end;
939   
940    %record vectors on the plotting axes
941    if test_C==0
942        vec_C=ones(1,numel(vec_X));
943    end
944    AxeData.X=vec_X';
945    AxeData.Y=vec_Y';
946    AxeData.U=vec_U';
947    AxeData.V=vec_V';
948    AxeData.C=vec_C';
949    if isempty(ivar_F)
950        AxeData.F=[];
951    else
952        AxeData.F=vec_F';
953    end
954    if isempty(ivar_FF)
955        AxeData.FF=[];
956    else
957        AxeData.FF=vec_FF';
958    end
959%     if isfield(Data,'W')
960%         AxeData.W=Data.W;
961%     end
962   
963    %decimate by a factor 2 in vector mesh(4 in nbre of vectors)
964    if isfield(PlotParam.Vectors,'decimate4')&isequal(PlotParam.Vectors.decimate4,1)
965        diffy=diff(vec_Y); %difference dy=vec_Y(i+1)-vec_Y(i)
966        dy_thresh=max(abs(diffy))/2;
967        ind_jump=find(abs(diffy) > dy_thresh); %indices with diff(vec_Y)> max/2, detect change of line
968        ind_sel=[1:ind_jump(1)];%select the first line
969        for i=2:2:length(ind_jump)-1
970            ind_sel=[ind_sel [ind_jump(i)+1:ind_jump(i+1)]];% select the odd lines
971        end
972        nb_sel=length(ind_sel);
973        ind_sel=ind_sel([1:2:nb_sel]);% take half the points on a line
974        vec_X=vec_X(ind_sel);
975        vec_Y=vec_Y(ind_sel);
976        vec_U=vec_U(ind_sel);
977        vec_V=vec_V(ind_sel);
978        vec_C=vec_C(ind_sel);
979        if ~isempty(ivar_F)
980           vec_F=vec_F(ind_sel);
981        end
982        if ~isempty(ivar_FF)
983           vec_FF=vec_FF(ind_sel);
984        end
985    end
986   
987    %get main level color code
988    [colorlist,col_vec,PlotParamOut.Vectors]=set_col_vec(PlotParam.Vectors,vec_C);
989    % take flags into account: add flag colors to the list of colors
990    sizlist=size(colorlist);
991    nbcolor=sizlist(1);
992    if test_black
993       nbcolor=nbcolor+1;
994       colorlist(nbcolor,:)=[0 0 0]; %add black to the list of colors
995       if ~isempty(ivar_FF)
996            ind_flag=find(vec_F~=1 & vec_F~=0 & vec_FF==0);  %flag warning but not false
997       else
998            ind_flag=find(vec_F~=1 & vec_F~=0);
999       end
1000       col_vec(ind_flag)=nbcolor;   
1001    end
1002    nbcolor=nbcolor+1;
1003    if ~isempty(ivar_FF)
1004        ind_flag=find(vec_FF~=0);
1005        if isfield(PlotParam.Vectors,'HideFalse') && PlotParam.Vectors.HideFalse==1
1006            colorlist(nbcolor,:)=[NaN NaN NaN];% no plot of false vectors
1007        else
1008            colorlist(nbcolor,:)=[1 0 1];% magenta color
1009        end
1010        col_vec(ind_flag)=nbcolor;
1011    end
1012    %plot vectors:
1013    quiresetn(haxes,vec_X,vec_Y,vec_U,vec_V,scale,colorlist,col_vec);   
1014else
1015    hvec=findobj(haxes,'Tag','vel');
1016    if ~isempty(hvec)
1017        delete(hvec);
1018    end
1019    AxeData.X=[];
1020    AxeData.Y=[];
1021    AxeData.U=[];
1022    AxeData.V=[];
1023    AxeData.C=[];
1024    AxeData.W=[];
1025    AxeData.F=[];
1026     AxeData.FF=[];
1027    AxeData.Mesh=[];
1028    PlotParamOut=rmfield(PlotParamOut,'Vectors');
1029end
1030if isfield(Data,'Z')
1031    AxeData.Z=Data.Z;% A REVOIR
1032end
1033listfields={'AY','AX','A','X','Y','U','V','C','W','F','FF'};
1034listdim={'AY','AX',{'AY','AX'},'nb_vectors','nb_vectors','nb_vectors','nb_vectors','nb_vectors','nb_vectors','nb_vectors','nb_vectors'};
1035Role={'coord_y','coord_x','scalar','coord_x','coord_y','vector_x','vector_y','scalar','vector_z','warnflag','errorflag'};
1036ind_select=[];
1037nbvar=0;
1038AxeData.ListVarName={};
1039AxeData.VarDimName={};
1040AxeData.VarAttribute={};
1041for ilist=1:numel(listfields)
1042    eval(['testvar=isfield(AxeData,listfields{ilist}) && ~isempty(AxeData.' listfields{ilist} ');'])
1043    if testvar
1044        nbvar=nbvar+1;
1045        AxeData.ListVarName{nbvar}=listfields{ilist};
1046        AxeData.VarDimName{nbvar}=listdim{ilist};
1047        AxeData.VarAttribute{nbvar}.Role=Role{ilist};
1048    end
1049end
1050%store the coordinate extrema occupied by the field
1051test_lim=0;
1052if test_vec
1053    Xlim=[min(vec_X) max(vec_X)];
1054    Ylim=[min(vec_Y) max(vec_Y)];
1055    test_lim=1;
1056    if test_ima%both background image and vectors coexist, take the wider bound
1057        Xlim(1)=min(AX(1),Xlim(1));
1058        Xlim(2)=max(AX(end),Xlim(2));
1059        Ylim(1)=min(AY(end),Ylim(1));
1060        Ylim(2)=max(AY(1),Ylim(2));
1061    end
1062elseif test_ima %only image plot
1063    Xlim(1)=min(AX(1),AX(end));
1064    Xlim(2)=max(AX(1),AX(end));
1065    Ylim(1)=min(AY(1),AY(end));
1066    Ylim(2)=max(AY(1),AY(end));
1067    test_lim=1;
1068end
1069AxeData.RangeX=Xlim;
1070AxeData.RangeY=Ylim;
1071% adjust the size of the plot to include the whole field, except if PlotParam.FixedLimits=1
1072if ~(isfield(PlotParam,'FixedLimits') && PlotParam.FixedLimits) && test_lim
1073        if Xlim(2)>Xlim(1)
1074            set(haxes,'XLim',Xlim);% set x limits of frame in axes coordinates
1075        end
1076        if Ylim(2)>Ylim(1)
1077            set(haxes,'YLim',Ylim);% set y limits of frame in axes coordinate
1078        end
1079end
1080if ~(isfield(PlotParam,'Auto_xy') && isequal(PlotParam.Auto_xy,1))
1081     set(haxes,'DataAspectRatio',[1 1 1])
1082end
1083set(haxes,'YDir','normal')
1084set(get(haxes,'XLabel'),'String',[XName x_units]);
1085set(get(haxes,'YLabel'),'String',[YName y_units]);
1086
1087%-------------------------------------------------------------------
1088% --- function for plotting vectors
1089%INPUT:
1090% haxes: handles of the plotting axes
1091%x,y,u,v: vectors coordinates and vector components to plot, arrays withb the same dimension
1092% scale: scaling factor for vector length representation
1093%colorlist(icolor,:): list of vector colors, dim (nbcolor,3), depending on color #i
1094%col_vec: matlab vector setting the color number #i for each velocity vector
1095function quiresetn(haxes,x,y,u,v,scale,colorlist,col_vec)
1096%-------------------------------------------------------------------
1097%define arrows
1098theta=0.5 ;%angle arrow
1099alpha=0.3 ;%length arrow
1100rot=alpha*[cos(theta) -sin(theta); sin(theta) cos(theta)]';
1101%find the existing lines
1102%h=findobj(gca,'Type','Line');% search existing lines in the current axes
1103h=findobj(haxes,'Tag','vel');% search existing lines in the current axes
1104sizh=size(h);
1105set(h,'EraseMode','xor');
1106set(haxes,'NextPlot','replacechildren');
1107%htext=findobj('Tag','scalevec');
1108     
1109%drawnow
1110%create lines (if no lines) or modify them
1111if ~isequal(size(col_vec),size(x))
1112    col_vec=ones(size(x));% case of error in col_vec input
1113end
1114sizlist=size(colorlist);
1115ncolor=sizlist(1);
1116
1117for icolor=1:ncolor
1118    %determine the line positions for each color icolor
1119    ind=find(col_vec==icolor);
1120    xc=x(ind);
1121    yc=y(ind);
1122    uc=u(ind)*scale;
1123    vc=v(ind)*scale;
1124    n=size(xc);
1125    xN=NaN*ones(size(xc));
1126    matx=[xc(:) xc(:)+uc(:) xN(:)]';
1127    matx=reshape(matx,1,3*n(2));
1128    maty=[yc(:) yc(:)+vc(:) xN(:)]';
1129    maty=reshape(maty,1,3*n(2));
1130   
1131    %determine arrow heads
1132    arrowplus=rot*[uc;vc];
1133    arrowmoins=rot'*[uc;vc];
1134    x1=xc+uc-arrowplus(1,:);
1135    x2=xc+uc;
1136    x3=xc+uc-arrowmoins(1,:);
1137    y1=yc+vc-arrowplus(2,:);
1138    y2=yc+vc;
1139    y3=yc+vc-arrowmoins(2,:);
1140    matxar=[x1(:) x2(:) x3(:) xN(:)]';
1141    matxar=reshape(matxar,1,4*n(2));
1142    matyar=[y1(:) y2(:) y3(:) xN(:)]';
1143    matyar=reshape(matyar,1,4*n(2));
1144    %draw the line or modify the existing ones
1145    isn=isnan(colorlist(icolor,:));%test if color NaN
1146    if 2*icolor > sizh(1) %if icolor exceeds the number of existing ones
1147        axes(haxes)
1148        if ~isn(1) %if the vectors are visible color not nan
1149            if n(2)>0
1150                hold on
1151                line(matx,maty,'Color',colorlist(icolor,:),'Tag','vel');% plot new lines
1152                line(matxar,matyar,'Color',colorlist(icolor,:),'Tag','vel');% plot arrows
1153            end
1154        end
1155    else
1156        if isn(1)
1157            delete(h(2*icolor-1))
1158            delete(h(2*icolor))
1159        else
1160            set(h(2*icolor-1),'Xdata',matx,'Ydata',maty);
1161            set(h(2*icolor-1),'Color',colorlist(icolor,:));
1162            set(h(2*icolor-1),'EraseMode','xor');
1163            set(h(2*icolor),'Xdata',matxar,'Ydata',matyar);
1164            set(h(2*icolor),'Color',colorlist(icolor,:));
1165            set(h(2*icolor),'EraseMode','xor');
1166        end
1167     end
1168end
1169if sizh(1) > 2*ncolor
1170    for icolor=ncolor+1 : sizh(1)/2%delete additional objects
1171        delete(h(2*icolor-1))
1172        delete(h(2*icolor))
1173    end
1174end
1175
1176%-------------------------------------------------------------------
1177% ---- determine tick positions for colorbar
1178function YTick=colbartick(MinA,MaxA)
1179%-------------------------------------------------------------------
1180%determine tick positions with "simple" values between MinA and MaxA
1181YTick=0;%default
1182maxabs=max([abs(MinA) abs(MaxA)]);
1183if maxabs>0
1184ord=10^(floor(log10(maxabs)));%order of magnitude
1185div=1;
1186siz2=1;
1187while siz2<2
1188%     values=[-9:div:9];
1189    values=-10:div:10;
1190    ind=find((ord*values-MaxA)<0 & (ord*values-MinA)>0);%indices of 'values' such that MinA<ord*values<MaxA
1191    siz=size(ind);
1192    if siz(2)<4%if there are less than 4 selected values (4 levels)
1193        values=[-9:0.5*div:9];
1194        ind=find((ord*values-MaxA)<0 & (ord*values-MinA)>0);
1195    end
1196    siz2=size(ind,2);
1197%     siz2=siz(2)
1198    div=div/10;
1199end
1200YTick=ord*values(ind);
1201end
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