[8] | 1 | %'proj_field': projects the field on a projection object
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| 2 | %--------------------------------------------------------------------------
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| 3 | % function [ProjData,errormsg]=proj_field(FieldData,ObjectData,IndexObj)
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| 4 | %
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| 5 | % OUTPUT:
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| 6 | % ProjData structure containing the fields of the input field FieldData,
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| 7 | % transmitted or projected on the object, plus the additional fields
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| 8 | % .UMax, .UMin, .VMax, .VMin: min and max of velocity components in a domain
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| 9 | % .UMean,VMean: mean of the velocity components in a domain
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| 10 | % .AMin, AMax: min and max of a scalar
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| 11 | % .AMean: mean of a scalar in a domain
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| 12 | % .NbPix;
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| 13 | % .DimName= names of the matrix dimensions (matlab cell)
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| 14 | % .DimValue= values of the matricx dimensions (matlab vector, same length as .DimName);
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| 15 | % .VarName= names of the variables [ProjData.VarName {'A','AMean','AMin','AMax'}];
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| 16 | % .VarDimNameIndex= dimensions of the variables, indicated by indices in the list .DimName;
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| 17 | %
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| 18 | %INPUT
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| 19 | % ObjectData: structure characterizing the projection object
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| 20 | % .Style : style of projection object
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| 21 | % .ProjMode=type of projection ;
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| 22 | % .CoordType: 'px' or 'phys' type of coordinates defining the object position
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| 23 | % .Phi angle of rotation (=0 by default)
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| 24 | % .ProjAngle=angle of projection;
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| 25 | % .DX,.DY,.DZ=increments along each coordinate
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| 26 | % .Coord(nbpoints,3): set of coordinates defining the object position;
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| 27 |
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| 28 | %FieldData: data of the field to be projected on the projection object, with optional fields
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| 29 | % .Txt: error message, transmitted to the projection
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| 30 | % .CoordType: 'px' or 'phys' type of coordinates of the field, must be the same as for the projection object, transmitted
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| 31 | % .Mesh: typical distance between data points (used for mouse action or display), transmitted
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| 32 | % .CoordUnit, .TimeUnit, .dt: transmitted
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| 33 | % standardised description of fields, nc-formated Matlab structure with fields:
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| 34 | % .ListGlobalAttribute: cell listing the names of the global attributes
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| 35 | % .Att_1,Att_2... : values of the global attributes
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| 36 | % .ListDimName: cell listing the names of the array dimensions
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| 37 | % .DimValue: array dimension values (Matlab vector with the same length as .ListDimName
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| 38 | % .ListVarName: cell listing the names of the variables
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| 39 | % .VarDimIndex: cell containing the set of dimension indices (in list .ListDimName) for each variable of .ListVarName
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| 40 | % .VarAttribute: cell of structures s containing names and values of variable attributes (s.name=value) for each variable of .ListVarName
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| 41 | % .Var1, .Var2....: variables (Matlab arrays) with names listed in .ListVarName
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| 42 | % The variables are grouped in 'fields', made of a set of variables with common dimensions (using the function find_field_indices)
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| 43 | % The variable attribute 'Role' is used to define the role for plotting:
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| 44 | % Role = 'scalar': (default) represents a scalar field
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| 45 | % = 'coord': represents a set of unstructured coordinates, whose
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| 46 | % space dimension is given by the last array dimension (called 'nb_dim').
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| 47 | % = 'coord_x', 'coord_y', 'coord_z': represents a separate set of
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| 48 | % unstructured coordinate x, y or z
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| 49 | % = 'vector': represents a vector field whose number of components
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| 50 | % is given by the last dimension (called 'nb_dim')
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| 51 | % = 'vector_x', 'vector_y', 'vector_z' :represents the x, y or z component of a vector
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| 52 | % = 'warnflag' : provides a warning flag about the quality of data in a 'Field', default=0, no warning
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| 53 | % = 'errorflag': provides an error flag marking false data,
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| 54 | % default=0, no error. Different non zero values can represent different criteria of elimination.
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| 55 | %
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| 56 | % Default role of variables (by name)
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| 57 | % vector field:
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| 58 | % .X,.Y: position of the velocity vectors, projected on the object
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| 59 | % .U, .V, .W: velocity components, projected on the object
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| 60 | % .C, .CName: scalar associated to the vector
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| 61 | % .F : equivalent to 'warnflag'
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| 62 | % .FF: equivalent to 'errorflag'
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| 63 | % scalar field or image:
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| 64 | % .AName: name of a scalar (to be calculated from velocity fields after projection), transmitted
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| 65 | % .A: scalar, projected on the object
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| 66 | % .AX, .AY: positions for the scalar
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| 67 | % case of a structured grid: A is a dim 2 matrix and .AX=[first last] (length 2 vector) represents the first and last abscissa of the grid
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| 68 | % case of an unstructured scalar: A is a vector, AX and AY the corresponding coordinates
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| 69 | %
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| 70 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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| 71 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org.
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| 72 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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| 73 | % This file is part of the toolbox UVMAT.
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| 74 | %
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| 75 | % UVMAT is free software; you can redistribute it and/or modify
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| 76 | % it under the terms of the GNU General Public License as published by
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| 77 | % the Free Software Foundation; either version 2 of the License, or
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| 78 | % (at your option) any later version.
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| 79 | %
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| 80 | % UVMAT is distributed in the hope that it will be useful,
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| 81 | % but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 82 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 83 | % GNU General Public License (file UVMAT/COPYING.txt) for more details.
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| 84 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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| 85 |
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| 86 | function [ProjData,errormsg]=proj_field(FieldData,ObjectData,IndexObj)
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| 87 |
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| 88 | if isfield(ObjectData,'ProjMode') && (isequal(ObjectData.ProjMode,'none')||isequal(ObjectData.ProjMode,'mask_inside')||isequal(ObjectData.ProjMode,'mask_outside'))
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| 89 | ProjData=[];
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| 90 | return
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| 91 | end
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| 92 | %introduce default field properties (reading old standards)
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| 93 | if ~isfield(ObjectData,'Style')||~isfield(ObjectData,'Coord')||~isfield(ObjectData,'ProjMode')
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| 94 | ProjData=FieldData;
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| 95 | return
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| 96 | end
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| 97 |
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| 98 | % OBSOLETE
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| 99 | if isfield(ObjectData,'XMax') && ~isempty(ObjectData.XMax)
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| 100 | ObjectData.RangeX(1)=ObjectData.XMax;
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| 101 | end
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| 102 | if isfield(ObjectData,'XMin') && ~isempty(ObjectData.XMin)
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| 103 | ObjectData.RangeX(2)=ObjectData.XMin;
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| 104 | end
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| 105 | if isfield(ObjectData,'YMax') && ~isempty(ObjectData.YMax)
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| 106 | ObjectData.RangeY(1)=ObjectData.YMax;
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| 107 | end
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| 108 | if isfield(ObjectData,'YMin') && ~isempty(ObjectData.YMin)
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| 109 | ObjectData.RangeY(2)=ObjectData.YMin;
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| 110 | end
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| 111 | if isfield(ObjectData,'ZMax') && ~isempty(ObjectData.ZMax)
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| 112 | ObjectData.RangeZ(1)=ObjectData.ZMax;
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| 113 | end
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| 114 | if isfield(ObjectData,'ZMin') && ~isempty(ObjectData.ZMin)
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| 115 | ObjectData.RangeZ(2)=ObjectData.ZMin;
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| 116 | end
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| 117 | %%%%%%%%%%
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| 118 |
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| 119 | % FieldData=document_field(FieldData);%transform FieldData to the standard format
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| 120 | % if ~isfield(FieldData,'VarAttribute')
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| 121 | % FieldData.VarAttribute={};
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| 122 | % end
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[77] | 123 | switch ObjectData.Style
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| 124 | case 'points'
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[8] | 125 | [ProjData,errormsg]=proj_points(FieldData,ObjectData);
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[77] | 126 | case {'line','polyline'}
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[8] | 127 | [ProjData,errormsg] = proj_line(FieldData,ObjectData);
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[77] | 128 | case {'polygon','rectangle','ellipse'}
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| 129 | if isequal(ObjectData.ProjMode,'inside')||isequal(ObjectData.ProjMode,'outside')
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| 130 | [ProjData,errormsg] = proj_patch(FieldData,ObjectData);
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| 131 | else
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| 132 | [ProjData,errormsg] = proj_line(FieldData,ObjectData);
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| 133 | end
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[8] | 134 | %A FAIRE : GERER MASK
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[77] | 135 | case 'plane'
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[8] | 136 | % if isfield(FieldData,'NbDim') & isequal(FieldData.NbDim,3)
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| 137 | % ProjData= proj_plane3D(FieldData,ObjectData);%
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| 138 | % else
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| 139 | [ProjData,errormsg] = proj_plane(FieldData,ObjectData);
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| 140 | % end
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[77] | 141 | case 'volume'
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| 142 | [ProjData,errormsg] = proj_volume(FieldData,ObjectData);
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[8] | 143 | end
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| 144 | if exist('IndexObj','var')
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| 145 | ProjData.IndexObj=IndexObj;%transfer object index
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| 146 | end
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| 147 |
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| 148 | %-----------------------------------------------------------------
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| 149 | %project on a set of points
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| 150 | function [ProjData,errormsg]=proj_points(FieldData,ObjectData)%%
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| 151 | %-------------------------------------------------------------------
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| 152 |
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| 153 | siz=size(ObjectData.Coord);
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| 154 | width=0;
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| 155 | if isfield(ObjectData,'Range')
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| 156 | width=ObjectData.Range(1,2);
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| 157 | end
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[77] | 158 | if isfield(ObjectData,'RangeX')&&~isempty(ObjectData.RangeX)
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[8] | 159 | width=max(ObjectData.RangeX);
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| 160 | end
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[77] | 161 | if isfield(ObjectData,'RangeY')&&~isempty(ObjectData.RangeY)
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[8] | 162 | width=max(width,max(ObjectData.RangeY));
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| 163 | end
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[77] | 164 | if isfield(ObjectData,'RangeZ')&&~isempty(ObjectData.RangeZ)
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[8] | 165 | width=max(width,max(ObjectData.RangeZ));
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| 166 | end
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| 167 | if isequal(ObjectData.ProjMode,'projection')
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| 168 | if width==0
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| 169 | errormsg='projection range around points needed';
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| 170 | return
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| 171 | end
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| 172 | elseif ~isequal(ObjectData.ProjMode,'interp')
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| 173 | errormsg=(['ProjMode option ' ObjectData.ProjMode ' not available in proj_field']);
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| 174 | return
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| 175 | end
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| 176 | ProjData=proj_heading(FieldData,ObjectData);
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| 177 | ProjData.NbDim=0;
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| 178 | %ProjData.ListDimName= {'nb_points'};
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| 179 | %ProjData.DimValue=siz(1); %nbre of projection points
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| 180 |
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| 181 |
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| 182 | % idimvar=0;
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| 183 | [CellVarIndex,NbDim,VarTypeCell,errormsg]=find_field_indices(FieldData);
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| 184 | if ~isempty(errormsg)
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| 185 | errormsg=['error in proj_field/proj_points:' errormsg];
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| 186 | return
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| 187 | end
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| 188 | %LOOP ON GROUPS OF VARIABLES SHARING THE SAME DIMENSIONS
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| 189 | % CellVarIndex=cells of variable index arrays
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| 190 | % ivar_new=0; % index of the current variable in the projected field
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| 191 | % icoord=0;
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| 192 | for icell=1:length(CellVarIndex)
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| 193 | if NbDim(icell)==1
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| 194 | continue
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| 195 | end
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| 196 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName
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| 197 | VarType=VarTypeCell{icell};
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| 198 | ivar_X=VarType.coord_x;
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| 199 | ivar_Y=VarType.coord_y;
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| 200 | ivar_Z=VarType.coord_z;
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| 201 | % ivar_U=VarType.vector_x;
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| 202 | % ivar_V=VarType.vector_y;
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| 203 | % ivar_W=VarType.vector_z;
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| 204 | % ivar_C=VarType.scalar ;
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| 205 | ivar_Anc=VarType.ancillary;
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| 206 | % test_anc=zeros(size(VarIndex));
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| 207 | test_anc(ivar_Anc)=ones(size(ivar_Anc));
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| 208 | ivar_F=VarType.warnflag;
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| 209 | ivar_FF=VarType.errorflag;
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| 210 | VarIndex([ivar_X ivar_Y ivar_Z ivar_Anc ivar_F ivar_FF])=[];% not projected variables removed frlom list
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| 211 | if isempty(ivar_X)
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| 212 | test_grid=1;%test for input data on regular grid (e.g. image)coordinates
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| 213 |
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| 214 | else
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| 215 | if length(ivar_X)>1 | length(ivar_Y)>1 | length(ivar_Z)>1
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| 216 | errormsg='multiple coordinate input in proj_field.m';
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| 217 | return
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| 218 | end
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| 219 | if length(ivar_Y)~=1
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| 220 | errormsg='y coordinate not defined in proj_field.m';
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| 221 | return
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| 222 | end
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| 223 | test_grid=0;
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| 224 | end
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| 225 | ProjData.ListVarName={'Y','X','NbVal'};
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| 226 | ProjData.VarDimName={'nb_points','nb_points','nb_points'};
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| 227 | %ProjData.VarDimIndex={[1],[1],[1]};
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| 228 | ProjData.VarAttribute{1}.Role='ancillary';
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| 229 | ProjData.VarAttribute{2}.Role='ancillary';
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| 230 | ProjData.VarAttribute{3}.Role='ancillary';
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| 231 | for ivar=VarIndex
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| 232 | VarName=FieldData.ListVarName{ivar};
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| 233 | ProjData.ListVarName=[ProjData.ListVarName {VarName}];
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| 234 | %ProjData.VarDimIndex=[ProjData.VarDimIndex {[1]}];
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| 235 | ProjData.VarDimName=[ProjData.VarDimName {'nb_points'}];
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| 236 | end
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| 237 | if ~test_grid
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| 238 | eval(['coord_x=FieldData.' FieldData.ListVarName{ivar_X} ';'])
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| 239 | eval(['coord_y=FieldData.' FieldData.ListVarName{ivar_Y} ';'])
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| 240 | test3D=0;% TEST 3D CASE : NOT COMPLETED , 3D CASE : NOT COMPLETED
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| 241 | if length(ivar_Z)==1
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| 242 | eval(['coord_z=FieldData.' FieldData.ListVarName{ivar_Z} ';'])
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| 243 | test3D=1;
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| 244 | end
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| 245 | if length(ivar_F)>1 | length(ivar_FF)>1
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[38] | 246 | msgbox_uvmat('ERROR','multiple flag input in proj_field.m')
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[8] | 247 | return
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[38] | 248 | end
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[8] | 249 | for ipoint=1:siz(1)
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| 250 | Xpoint=ObjectData.Coord(ipoint,:);
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| 251 | distX=coord_x-Xpoint(1);
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| 252 | distY=coord_y-Xpoint(2);
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| 253 | dist=distX.*distX+distY.*distY;
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| 254 | indsel=find(dist<width*width);
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| 255 | ProjData.X(ipoint,1)=Xpoint(1);
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| 256 | ProjData.Y(ipoint,1)=Xpoint(2);
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| 257 | if isequal(length(ivar_FF),1)
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| 258 | FFName=FieldData.ListVarName{ivar_FF};
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| 259 | eval(['FF=FieldData.' FFName '(indsel);'])
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| 260 | ind_indsel=find(~FF);
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| 261 | indsel=indsel(ind_indsel);
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| 262 | end
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| 263 | ProjData.NbVal(ipoint,1)=length(indsel);
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| 264 | for ivar=VarIndex
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| 265 | VarName=FieldData.ListVarName{ivar};
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| 266 | if isempty(indsel)
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| 267 | eval(['ProjData.' VarName '(ipoint,1)=NaN;'])
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| 268 | else
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| 269 | eval(['Var=FieldData.' VarName '(indsel);'])
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| 270 | eval(['ProjData.' VarName '(ipoint,1)=mean(Var);'])
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| 271 | if isequal(ObjectData.ProjMode,'interp')
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| 272 | eval(['ProjData.' VarName '(ipoint,1)=griddata_uvmat(coord_x(indsel),coord_y(indsel),Var,Xpoint(1),Xpoint(2)))';])
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| 273 | end
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| 274 | end
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| 275 | end
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| 276 | end
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| 277 | else
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| 278 | %DimIndices=FieldData.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell)
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| 279 | %case of structured coordinates
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| 280 | if numel(VarType.coord)>=2 & VarType.coord(1:2) > 0;
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| 281 | AYName=FieldData.ListVarName{VarType.coord(1)};
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| 282 | AXName=FieldData.ListVarName{VarType.coord(2)};
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| 283 | eval(['AX=FieldData.' AXName ';']);% set of x positions
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| 284 | eval(['AY=FieldData.' AYName ';']);% set of y positions
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| 285 | AName=FieldData.ListVarName{VarIndex(1)};
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| 286 | eval(['A=FieldData.' AName ';']);% scalar
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| 287 | npxy=size(A);
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| 288 |
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| 289 | % % nbcolor=1; %default
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| 290 | % for idim=1:length(ListDimName)
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| 291 | % DimName=ListDimName{idim};
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| 292 | % if isequal(DimName,'rgb')|isequal(DimName,'nb_coord')|isequal(DimName,'nb_coord_i')
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| 293 | % nbcolor=npxy(idim);
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| 294 | % DimIndices(idim)=[];
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| 295 | % npxy(idim)=[];
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| 296 | % end
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| 297 | % if isequal(DimName,'nb_coord_j')% NOTE: CASE OF TENSOR NOT TREATED
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| 298 | % DimIndices(idim)=[];
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| 299 | % npxy(idim)=[];
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| 300 | % end
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| 301 | % end
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| 302 | ind_1=find(npxy==1);
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| 303 | %DimIndices(ind_1)=[]; %suppress singleton dimensions
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| 304 | % indxy=find(DimVarIndex(DimIndices));%select dimension variables (DimIndices non zero)
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| 305 | %nb_dim=length(DimIndices)%number of space dimensions
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| 306 | nb_dim=numel(VarType.coord);
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| 307 | Coord_z=[];
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| 308 | Coord_y=[];
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| 309 | Coord_x=[];
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| 310 | for idim=1:nb_dim %loop on space dimensions
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| 311 | test_interp(idim)=0;%test for coordiate interpolation (non regular grid), =0 by default
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| 312 | test_coord(idim)=0;%test for defined coordinates, =0 by default
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| 313 | %ivar=DimVarIndex(DimIndices(idim));% index of the variable corresponding to the current dimension
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| 314 | ivar=VarType.coord(idim);
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| 315 | % if ~isequal(ivar,0)% a variable corresponds to the current dimension
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| 316 | eval(['Coord{idim}=FieldData.' FieldData.ListVarName{ivar} ';']) ;% position for the first index
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| 317 | if numel(Coord{idim})==2
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| 318 | DCoord_min(idim)= (Coord{idim}(2)-Coord{idim}(1))/(npxy(idim)-1);
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| 319 | else
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| 320 | DCoord=diff(Coord{idim});
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| 321 | DCoord_min(idim)=min(DCoord);
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| 322 | DCoord_max=max(DCoord);
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| 323 | test_direct(idim)=DCoord_max>0;% =1 for increasing values, 0 otherwise
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| 324 | test_direct_min=DCoord_min(idim)>0;% =1 for increasing values, 0 otherwise
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| 325 | if ~isequal(test_direct(idim),test_direct_min)
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| 326 | errormsg=['non monotonic dimension variable # ' num2str(idim) ' in proj_field.m'];
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| 327 | return
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| 328 | end
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| 329 | test_interp(idim)=(DCoord_max-DCoord_min(idim))> 0.0001*abs(DCoord_max);% test grid regularity
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| 330 | test_coord(idim)=1;
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| 331 | end
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| 332 | % else % no variable associated with the first dimension, look fo variable attributes Coord_1, _2 or _3
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| 333 | % Coord_i_str=['Coord_' num2str(idim)];
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| 334 | % DCoord_min(idim)=1;%default
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| 335 | % Coord{idim}=[0.5 npxy(idim)];
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| 336 | % test_direct(idim)=1;
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| 337 | % end
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| 338 | end
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| 339 | DX=DCoord_min(2);
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| 340 | DY=DCoord_min(1);
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| 341 | for ipoint=1:siz(1)
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| 342 | xwidth=width/(abs(DX));
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| 343 | ywidth=width/(abs(DY));
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| 344 | i_min=round((ObjectData.Coord(ipoint,1)-Coord{2}(1))/DX+0.5-xwidth); %minimum index of the selected region
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| 345 | i_min=max(1,i_min);%restrict to field limit
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| 346 | i_plus=round((ObjectData.Coord(ipoint,1)-Coord{2}(1))/DX+0.5+xwidth);
|
---|
| 347 | i_plus=min(npxy(2),i_plus); %restrict to field limit
|
---|
| 348 | j_min=round((ObjectData.Coord(ipoint,2)-Coord{1}(1))/DY-ywidth+0.5);
|
---|
| 349 | j_min=max(1,j_min);
|
---|
| 350 | j_plus=round((ObjectData.Coord(ipoint,2)-Coord{1}(1))/DY+ywidth+0.5);
|
---|
| 351 | j_plus=min(npxy(1),j_plus);
|
---|
| 352 | ProjData.X(ipoint,1)=ObjectData.Coord(ipoint,1);
|
---|
| 353 | ProjData.Y(ipoint,1)=ObjectData.Coord(ipoint,2);
|
---|
| 354 | i_int=[i_min:i_plus];
|
---|
| 355 | j_int=[j_min:j_plus];
|
---|
| 356 | ProjData.NbVal(ipoint,1)=length(j_int)*length(i_int);
|
---|
| 357 | if isempty(i_int) | isempty(j_int)
|
---|
| 358 | for ivar=VarIndex
|
---|
| 359 | eval(['ProjData.' FieldData.ListVarName{ivar} '(ipoint,:)=NaN;']);
|
---|
| 360 | end
|
---|
| 361 | errormsg=['no data points in the selected projection range ' num2str(width) ];
|
---|
| 362 | else
|
---|
| 363 | %TODO: introduce circle in the selected subregion
|
---|
| 364 | %[I,J]=meshgrid([1:j_int],[1:i_int]);
|
---|
| 365 | for ivar=VarIndex
|
---|
| 366 | eval(['Avalue=FieldData.' FieldData.ListVarName{ivar} '(j_int,i_int,:);']);
|
---|
| 367 | eval(['ProjData.' FieldData.ListVarName{ivar} '(ipoint,:)=mean(mean(Avalue));']);
|
---|
| 368 | end
|
---|
| 369 | end
|
---|
| 370 | end
|
---|
| 371 | end
|
---|
| 372 | end
|
---|
| 373 | end
|
---|
| 374 |
|
---|
| 375 | %-----------------------------------------------------------------
|
---|
| 376 | %project in a patch
|
---|
| 377 | function [ProjData,errormsg]=proj_patch(FieldData,ObjectData)%%
|
---|
| 378 | %-------------------------------------------------------------------
|
---|
| 379 | ProjData=proj_heading(FieldData,ObjectData);
|
---|
| 380 |
|
---|
| 381 | objectfield=fieldnames(ObjectData);
|
---|
| 382 | widthx=0;
|
---|
| 383 | widthy=0;
|
---|
| 384 | if isfield(ObjectData,'RangeX')&~isempty(ObjectData.RangeX)
|
---|
| 385 | widthx=max(ObjectData.RangeX);
|
---|
| 386 | end
|
---|
| 387 | if isfield(ObjectData,'RangeY')&~isempty(ObjectData.RangeY)
|
---|
| 388 | widthy=max(ObjectData.RangeY);
|
---|
| 389 | end
|
---|
| 390 |
|
---|
| 391 | %A REVOIR, GENERALISER: UTILISER proj_line
|
---|
| 392 | ProjData.NbDim=1;
|
---|
| 393 | ProjData.ListDimName={};%name of dimension
|
---|
| 394 | ProjData.DimValue=[];%values of dimension (nbre of vectors)
|
---|
| 395 | ProjData.ListVarName={};
|
---|
| 396 | %ProjData.VarDimIndex={};
|
---|
| 397 | ProjData.VarDimName={};
|
---|
| 398 | if isfield (FieldData,'ListVarAttribute')
|
---|
| 399 | ProjData.ListVarAttribute=FieldData.ListVarAttribute;%list of variable attribute names
|
---|
| 400 | for iattr=1:length(ProjData.ListVarAttribute)%initialization of variable attribute values
|
---|
| 401 | AttrName=ProjData.ListVarAttribute{iattr};
|
---|
| 402 | eval(['ProjData.' AttrName '={};'])
|
---|
| 403 | end;
|
---|
| 404 | end
|
---|
| 405 |
|
---|
| 406 | %group the variables (fields of 'FieldData') in cells of variables with the same dimensions
|
---|
| 407 | testfalse=0;
|
---|
| 408 | ListIndex={};
|
---|
| 409 | % DimVarIndex=0;%initilise list of indices for dimension variables
|
---|
| 410 | idimvar=0;
|
---|
| 411 | [CellVarIndex,NbDim,VarTypeCell,errormsg]=find_field_indices(FieldData);
|
---|
| 412 | if ~isempty(errormsg)
|
---|
| 413 | errormsg=['error in proj_field/proj_patch:' errormsg];
|
---|
| 414 | return
|
---|
| 415 | end
|
---|
| 416 |
|
---|
| 417 | %LOOP ON GROUPS OF VARIABLES SHARING THE SAME DIMENSIONS
|
---|
| 418 | dimcounter=0;
|
---|
| 419 | for icell=1:length(CellVarIndex)
|
---|
| 420 | testX=0;
|
---|
| 421 | testY=0;
|
---|
| 422 | test_Amat=0;
|
---|
| 423 | testfalse=0;
|
---|
| 424 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName
|
---|
| 425 | VarType=VarTypeCell{icell};
|
---|
| 426 | % DimIndices=FieldData.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell)
|
---|
| 427 | if NbDim(icell)~=2% proj_patch acts only on fields of space dimension 2
|
---|
| 428 | continue
|
---|
| 429 | end
|
---|
| 430 | testX=~isempty(VarType.coord_x) && ~isempty(VarType.coord_y);
|
---|
| 431 | testfalse=~isempty(VarType.errorflag);
|
---|
| 432 | testproj(VarIndex)=zeros(size(VarIndex));%default
|
---|
| 433 | testproj(VarType.scalar)=1;
|
---|
| 434 | testproj(VarType.vector_x)=1;
|
---|
| 435 | testproj(VarType.vector_y)=1;
|
---|
| 436 | testproj(VarType.vector_z)=1;
|
---|
| 437 | testproj(VarType.image)=1;
|
---|
| 438 | testproj(VarType.color)=1;
|
---|
| 439 | VarIndex=VarIndex(find(testproj(VarIndex)));%select only the projected variables
|
---|
| 440 | if testX %case of unstructured coordinates
|
---|
| 441 | eval(['nbpoint=numel(FieldData.' FieldData.ListVarName{VarIndex(1)} ');'])
|
---|
| 442 | for ivar=[VarIndex VarType.coord_x VarType.coord_y VarType.errorflag]
|
---|
| 443 | VarName=FieldData.ListVarName{ivar};
|
---|
| 444 | eval(['FieldData.' VarName '=reshape(FieldData.' VarName ',nbpoint,1);'])
|
---|
| 445 | end
|
---|
| 446 | XName=FieldData.ListVarName{VarType.coord_x};
|
---|
| 447 | YName=FieldData.ListVarName{VarType.coord_y};
|
---|
| 448 | eval(['coord_x=FieldData.' XName ';'])
|
---|
| 449 | eval(['coord_y=FieldData.' YName ';'])
|
---|
| 450 | end
|
---|
| 451 | if testfalse
|
---|
| 452 | FFName=FieldData.ListVarName{VarType.errorflag};
|
---|
| 453 | eval(['errorflag=FieldData.' FFName ';'])
|
---|
| 454 | end
|
---|
| 455 | % image or 2D matrix
|
---|
| 456 | if numel(VarType.coord)>=2 & VarType.coord(1:2) > 0;
|
---|
| 457 | test_Amat=1;%image or 2D matrix
|
---|
| 458 | AYName=FieldData.ListVarName{VarType.coord(1)};
|
---|
| 459 | AXName=FieldData.ListVarName{VarType.coord(2)};
|
---|
| 460 | eval(['AX=FieldData.' AXName ';'])% x coordinate
|
---|
| 461 | eval(['AY=FieldData.' AYName ';'])% y coordinate
|
---|
| 462 | VarName=FieldData.ListVarName{VarIndex(1)};
|
---|
| 463 | eval(['DimValue=size(FieldData.' VarName ');'])
|
---|
| 464 | testcolor=find(numel(DimValue)==3);
|
---|
| 465 | % errormsg='multicomponent field not projected';
|
---|
| 466 |
|
---|
| 467 | for idim=1:length(DimValue)
|
---|
| 468 | Coord_i_str=['Coord_' num2str(idim)];
|
---|
| 469 | DCoord_min(idim)=1;%default
|
---|
| 470 | Coord{idim}=[0.5 DimValue(idim)];
|
---|
| 471 | test_direct(idim)=1;
|
---|
| 472 | end
|
---|
| 473 | AX=linspace(Coord{2}(1),Coord{2}(2),DimValue(2));
|
---|
| 474 | AY=linspace(Coord{1}(1),Coord{1}(2),DimValue(1)); %TODO : 3D case
|
---|
| 475 | if length(DimValue)==3
|
---|
| 476 | testcolor=1;
|
---|
| 477 | npxy(3)=3;
|
---|
| 478 | else
|
---|
| 479 | testcolor=0;
|
---|
| 480 | npxy(3)=1;
|
---|
| 481 | end
|
---|
| 482 | [Xi,Yi]=meshgrid(AX,AY);
|
---|
| 483 | npxy(1)=length(AY);
|
---|
| 484 | npxy(2)=length(AX);
|
---|
| 485 | Xi=reshape(Xi,npxy(1)*npxy(2),1);
|
---|
| 486 | Yi=reshape(Yi,npxy(1)*npxy(2),1);
|
---|
| 487 | for ivar=1:length(VarIndex)
|
---|
| 488 | VarName=FieldData.ListVarName{VarIndex(ivar)};
|
---|
| 489 | eval(['FieldData.' VarName '=reshape(FieldData.' VarName ',npxy(1)*npxy(2),npxy(3));']); % keep only non false vectors
|
---|
| 490 | end
|
---|
| 491 | end
|
---|
| 492 | %select the indices in the range of action
|
---|
| 493 | testin=[];%default
|
---|
| 494 | if isequal(ObjectData.Style,'rectangle')
|
---|
| 495 | % if ~isfield(ObjectData,'RangeX')|~isfield(ObjectData,'RangeY')
|
---|
| 496 | % errormsg='rectangle half sides RangeX and RangeY needed'
|
---|
| 497 | % return
|
---|
| 498 | % end
|
---|
| 499 | if testX
|
---|
| 500 | distX=abs(coord_x-ObjectData.Coord(1,1));
|
---|
| 501 | distY=abs(coord_y-ObjectData.Coord(1,2));
|
---|
| 502 | testin=distX<widthx & distY<widthy;
|
---|
| 503 | elseif test_Amat
|
---|
| 504 | distX=abs(Xi-ObjectData.Coord(1,1));
|
---|
| 505 | distY=abs(Yi-ObjectData.Coord(1,2));
|
---|
| 506 | testin=distX<widthx & distY<widthy;
|
---|
| 507 | end
|
---|
| 508 | elseif isequal(ObjectData.Style,'polygon')
|
---|
| 509 | if testX
|
---|
| 510 | testin=inpolygon(coord_x,coord_y,ObjectData.Coord(:,1),ObjectData.Coord(:,2));
|
---|
| 511 | elseif test_Amat
|
---|
| 512 | testin=inpolygon(Xi,Yi,ObjectData.Coord(:,1),ObjectData.Coord(:,2));
|
---|
| 513 | else%calculate the scalar
|
---|
| 514 | testin=[]; %A REVOIR
|
---|
| 515 | end
|
---|
| 516 | elseif isequal(ObjectData.Style,'ellipse')
|
---|
| 517 | X2Max=widthx*widthx;
|
---|
| 518 | Y2Max=(widthy)*(widthy);
|
---|
| 519 | if testX
|
---|
| 520 | distX=(coord_x-ObjectData.Coord(1,1));
|
---|
| 521 | distY=(coord_y-ObjectData.Coord(1,2));
|
---|
| 522 | testin=(distX.*distX/X2Max+distY.*distY/Y2Max)<1;
|
---|
| 523 | elseif test_Amat %case of usual 2x2 matrix
|
---|
| 524 | distX=(Xi-ObjectData.Coord(1,1));
|
---|
| 525 | distY=(Yi-ObjectData.Coord(1,2));
|
---|
| 526 | testin=(distX.*distX/X2Max+distY.*distY/Y2Max)<1;
|
---|
| 527 | end
|
---|
| 528 | end
|
---|
| 529 | %selected indices
|
---|
| 530 | if isequal(ObjectData.ProjMode,'outside')
|
---|
| 531 | testin=~testin;
|
---|
| 532 | end
|
---|
| 533 | if testfalse
|
---|
| 534 | testin=testin & (errorflag==0); % keep only non false vectors
|
---|
| 535 | end
|
---|
| 536 | indsel=find(testin);
|
---|
| 537 | for ivar=VarIndex
|
---|
| 538 | if testproj(ivar)
|
---|
| 539 | VarName=FieldData.ListVarName{ivar};
|
---|
| 540 | eval(['ProjData.' VarName 'Mean=mean(mean(double(FieldData.' VarName '(indsel,:))));']); % keep only non false vectors
|
---|
| 541 | eval(['[ProjData.' VarName 'Histo,ProjData.' VarName ']=hist(double(FieldData.' VarName '(indsel,:)),100);']); % keep only non false vectors
|
---|
| 542 | ProjData.ListVarName=[ProjData.ListVarName {VarName} {[VarName 'Histo']} {[VarName 'Mean']}];
|
---|
| 543 | if test_Amat && testcolor
|
---|
| 544 | ProjData.VarDimName=[ProjData.VarDimName {VarName} {{VarName,'rgb'}} {'rgb'}];%{{'nb_point','rgb'}};
|
---|
| 545 | else
|
---|
| 546 | ProjData.VarDimName=[ProjData.VarDimName {VarName} {VarName} {'nbpoint'}];
|
---|
| 547 | end
|
---|
| 548 | end
|
---|
| 549 | end
|
---|
| 550 | % if test_Amat & testcolor
|
---|
| 551 | % %ProjData.ListDimName=[ProjData.ListDimName {'rgb'}];
|
---|
| 552 | % % ProjData.DimValue=[ProjData.DimValue 3];
|
---|
| 553 | % % ProjData.VarDimIndex={[1 2]};
|
---|
| 554 | % ProjData.VarDimName=[ProjData.VarDimName {VarName} {VarName,'rgb'}];%{{'nb_point','rgb'}};
|
---|
| 555 | % ProjData.VarDimName
|
---|
| 556 | % end
|
---|
| 557 | end
|
---|
| 558 |
|
---|
| 559 |
|
---|
| 560 |
|
---|
| 561 | %-----------------------------------------------------------------
|
---|
| 562 | %project on a line
|
---|
| 563 | % AJOUTER flux,circul,error
|
---|
| 564 | function [ProjData,errormsg] = proj_line(FieldData, ObjectData)
|
---|
| 565 | %-----------------------------------------------------------------
|
---|
| 566 | ProjData=proj_heading(FieldData,ObjectData);%transfer global attributes
|
---|
| 567 | ProjData.NbDim=1;
|
---|
| 568 |
|
---|
| 569 | %initialisation of the input parameters and defaultoutput
|
---|
| 570 | ProjMode='projection';%direct projection on the line by default
|
---|
| 571 | if isfield(ObjectData,'ProjMode'),ProjMode=ObjectData.ProjMode; end;
|
---|
| 572 | ProjAngle=90; %90 degrees projection by default
|
---|
| 573 | if isfield(FieldData,'ProjAngle'),ProjAngle=ObjectData.ProjAngle; end;
|
---|
| 574 | width=0;%default width of the projection band
|
---|
| 575 | if isfield(ObjectData,'Range')&size(ObjectData.Range,2)>=2
|
---|
| 576 | width=abs(ObjectData.Range(1,2));
|
---|
| 577 | end
|
---|
| 578 | if isfield(ObjectData,'RangeY')
|
---|
| 579 | width=max(ObjectData.RangeY);
|
---|
| 580 | end
|
---|
| 581 |
|
---|
| 582 | % default output
|
---|
| 583 | errormsg=[];%default
|
---|
| 584 | Xline=[];
|
---|
| 585 | flux=0;
|
---|
| 586 | circul=0;
|
---|
| 587 | liny=ObjectData.Coord(:,2);
|
---|
| 588 | siz_line=size(ObjectData.Coord);
|
---|
| 589 | if siz_line(1)<2
|
---|
| 590 | return% line needs at least 2 points to be defined
|
---|
| 591 | end
|
---|
| 592 | testfalse=0;
|
---|
| 593 | ListIndex={};
|
---|
| 594 |
|
---|
| 595 | %angles of the polyline and boundaries of action
|
---|
| 596 | dlinx=diff(ObjectData.Coord(:,1));
|
---|
| 597 | dliny=diff(ObjectData.Coord(:,2));
|
---|
| 598 | theta=angle(dlinx+i*dliny);%angle of each segment
|
---|
| 599 | theta(siz_line(1))=theta(siz_line(1)-1);
|
---|
| 600 | % determine a rectangles at +-width from the line (only used for the ProjMode='projection or 'filter')
|
---|
| 601 | if isequal(ProjMode,'projection') || isequal(ProjMode,'filter')
|
---|
| 602 | xsup(1)=ObjectData.Coord(1,1)-width*sin(theta(1));
|
---|
| 603 | xinf(1)=ObjectData.Coord(1,1)+width*sin(theta(1));
|
---|
| 604 | ysup(1)=ObjectData.Coord(1,2)+width*cos(theta(1));
|
---|
| 605 | yinf(1)=ObjectData.Coord(1,2)-width*cos(theta(1));
|
---|
| 606 | for ip=2:siz_line(1)
|
---|
| 607 | xsup(ip)=ObjectData.Coord(ip,1)-width*sin((theta(ip)+theta(ip-1))/2)/cos((theta(ip-1)-theta(ip))/2);
|
---|
| 608 | xinf(ip)=ObjectData.Coord(ip,1)+width*sin((theta(ip)+theta(ip-1))/2)/cos((theta(ip-1)-theta(ip))/2);
|
---|
| 609 | ysup(ip)=ObjectData.Coord(ip,2)+width*cos((theta(ip)+theta(ip-1))/2)/cos((theta(ip-1)-theta(ip))/2);
|
---|
| 610 | yinf(ip)=ObjectData.Coord(ip,2)-width*cos((theta(ip)+theta(ip-1))/2)/cos((theta(ip-1)-theta(ip))/2);
|
---|
| 611 | end
|
---|
| 612 | end
|
---|
| 613 |
|
---|
| 614 | %group the variables (fields of 'FieldData') in cells of variables with the same dimensions
|
---|
| 615 | [CellVarIndex,NbDim,VarTypeCell,errormsg]=find_field_indices(FieldData);
|
---|
| 616 | if ~isempty(errormsg)
|
---|
| 617 | errormsg=['error in proj_field/proj_line:' errormsg];
|
---|
| 618 | return
|
---|
| 619 | end
|
---|
| 620 |
|
---|
| 621 | % loop on variable cells with the same space dimension
|
---|
| 622 | ProjData.ListVarName={};
|
---|
| 623 | ProjData.VarDimName={};
|
---|
| 624 | for icell=1:length(CellVarIndex)
|
---|
| 625 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName
|
---|
| 626 | VarType=VarTypeCell{icell}; %types of variables
|
---|
| 627 | if NbDim(icell)~=2% proj_line acts only on fields of space dimension 2, TODO: check 3D case
|
---|
| 628 | continue
|
---|
| 629 | end
|
---|
| 630 | testX=~isempty(VarType.coord_x) && ~isempty(VarType.coord_y);% test for unstructured coordinates
|
---|
| 631 | testU=~isempty(VarType.vector_x) && ~isempty(VarType.vector_y);% test for vectors
|
---|
| 632 | testfalse=~isempty(VarType.errorflag);% test for error flag
|
---|
| 633 | testproj(VarIndex)=zeros(size(VarIndex));% test =1 for simply projected variables, default =0
|
---|
| 634 | %=0 for vector components, treated separately
|
---|
| 635 | testproj(VarType.scalar)=1;
|
---|
| 636 | testproj(VarType.image)=1;
|
---|
| 637 | testproj(VarType.color)=1;
|
---|
| 638 | VarIndex=VarIndex(find(testproj(VarIndex)));%select only the projected variables
|
---|
| 639 | if testU
|
---|
| 640 | VarIndex=[VarIndex VarType.vector_x VarType.vector_y];%append u and v at the end of the list of variables
|
---|
| 641 | end
|
---|
| 642 | %identify vector components
|
---|
| 643 | if testU
|
---|
| 644 | UName=FieldData.ListVarName{VarType.vector_x};
|
---|
| 645 | VName=FieldData.ListVarName{VarType.vector_y};
|
---|
| 646 | eval(['vector_x=FieldData.' UName ';'])
|
---|
| 647 | eval(['vector_y=FieldData.' VName ';'])
|
---|
| 648 | end
|
---|
| 649 | %identify error flag
|
---|
| 650 | if testfalse
|
---|
| 651 | FFName=FieldData.ListVarName{VarType.errorflag};
|
---|
| 652 | eval(['errorflag=FieldData.' FFName ';'])
|
---|
| 653 | end
|
---|
| 654 | % check needed object properties for unstructured positions (position given by the variables with role coord_x, coord_y
|
---|
| 655 | if testX
|
---|
| 656 | if ~isequal(ProjMode,'interp')
|
---|
| 657 | if width==0
|
---|
| 658 | errormsg='range of the projection object is missing';
|
---|
| 659 | return
|
---|
| 660 | else
|
---|
| 661 | lambda=2/(width*width); %smoothing factor used for filter: weight exp(-2) at distance width from the line
|
---|
| 662 | end
|
---|
| 663 | end
|
---|
| 664 | if ~isequal(ProjMode,'projection')
|
---|
| 665 | if isfield(ObjectData,'DX')&~isempty(ObjectData.DX)
|
---|
| 666 | DX=abs(ObjectData.DX);%mesh of interpolation points along the line
|
---|
| 667 | else
|
---|
| 668 | errormsg='DX missing';
|
---|
| 669 | return
|
---|
| 670 | end
|
---|
| 671 | end
|
---|
| 672 | XName= FieldData.ListVarName{VarType.coord_x};
|
---|
| 673 | YName= FieldData.ListVarName{VarType.coord_y};
|
---|
| 674 | eval(['coord_x=FieldData.' XName ';'])
|
---|
| 675 | eval(['coord_y=FieldData.' YName ';'])
|
---|
| 676 | end
|
---|
| 677 | %initiate projection
|
---|
| 678 | for ivar=1:length(VarIndex)
|
---|
| 679 | ProjLine{ivar}=[];
|
---|
| 680 | end
|
---|
| 681 | XLine=[];
|
---|
| 682 | linelengthtot=0;
|
---|
| 683 |
|
---|
| 684 | % circul=0;
|
---|
| 685 | % flux=0;
|
---|
| 686 | %%%%%%% % A FAIRE CALCULER MEAN DES QUANTITES %%%%%%
|
---|
| 687 | %case of unstructured coordinates
|
---|
| 688 | if testX
|
---|
| 689 | for ip=1:siz_line(1)-1 %Loop on the segments of the polyline
|
---|
| 690 | linelength=sqrt(dlinx(ip)*dlinx(ip)+dliny(ip)*dliny(ip));
|
---|
| 691 | %select the vector indices in the range of action
|
---|
| 692 | if testfalse
|
---|
| 693 | flagsel=(errorflag==0); % keep only non false vectors
|
---|
| 694 | else
|
---|
| 695 | flagsel=ones(size(coord_x));
|
---|
| 696 | end
|
---|
| 697 | if isequal(ProjMode,'projection') | isequal(ProjMode,'filter')
|
---|
| 698 | flagsel=flagsel & ((coord_y -yinf(ip))*(xinf(ip+1)-xinf(ip))>(coord_x-xinf(ip))*(yinf(ip+1)-yinf(ip))) ...
|
---|
| 699 | & ((coord_y -ysup(ip))*(xsup(ip+1)-xsup(ip))<(coord_x-xsup(ip))*(ysup(ip+1)-ysup(ip))) ...
|
---|
| 700 | & ((coord_y -yinf(ip+1))*(xsup(ip+1)-xinf(ip+1))>(coord_x-xinf(ip+1))*(ysup(ip+1)-yinf(ip+1))) ...
|
---|
| 701 | & ((coord_y -yinf(ip))*(xsup(ip)-xinf(ip))<(coord_x-xinf(ip))*(ysup(ip)-yinf(ip)));
|
---|
| 702 | end
|
---|
| 703 | indsel=find(flagsel);%indsel =indices of good vectors
|
---|
| 704 | X_sel=coord_x(indsel);
|
---|
| 705 | Y_sel=coord_y(indsel);
|
---|
| 706 | nbvar=0;
|
---|
| 707 | for iselect=1:numel(VarIndex)-2*testU
|
---|
| 708 | VarName=FieldData.ListVarName{VarIndex(iselect)};
|
---|
| 709 | eval(['ProjVar{iselect}=FieldData.' VarName '(indsel);']);%scalar value
|
---|
| 710 | end
|
---|
| 711 | if testU
|
---|
| 712 | ProjVar{numel(VarIndex)-1}=cos(theta(ip))*vector_x(indsel)+sin(theta(ip))*vector_y(indsel);% longitudinal component
|
---|
| 713 | ProjVar{numel(VarIndex)}=-sin(theta(ip))*vector_x(indsel)+cos(theta(ip))*vector_y(indsel);%transverse component
|
---|
| 714 | end
|
---|
| 715 | if isequal(ProjMode,'projection')
|
---|
| 716 | sintheta=sin(theta(ip));
|
---|
| 717 | costheta=cos(theta(ip));
|
---|
| 718 | Xproj=(X_sel-ObjectData.Coord(ip,1))*costheta + (Y_sel-ObjectData.Coord(ip,2))*sintheta; %projection on the line
|
---|
| 719 | [Xproj,indsort]=sort(Xproj);
|
---|
| 720 | for ivar=1:numel(ProjVar)
|
---|
| 721 | if ~isempty(ProjVar{ivar})
|
---|
| 722 | ProjVar{ivar}=ProjVar{ivar}(indsort);
|
---|
| 723 | end
|
---|
| 724 | end
|
---|
| 725 | elseif isequal(ProjMode,'interp') %linear interpolation:
|
---|
| 726 | npoint=floor(linelength/DX)+1;% nbre of points in the profile (interval DX)
|
---|
| 727 | Xproj=[linelength/(2*npoint):linelength/npoint:linelength-linelength/(2*npoint)];
|
---|
| 728 | xreg=cos(theta(ip))*Xproj+ObjectData.Coord(ip,1);
|
---|
| 729 | yreg=sin(theta(ip))*Xproj+ObjectData.Coord(ip,2);
|
---|
| 730 | for ivar=1:numel(ProjVar)
|
---|
| 731 | if ~isempty(ProjVar{ivar})
|
---|
| 732 | ProjVar{ivar}=griddata_uvmat(X_sel,Y_sel,ProjVar{ivar},xreg,yreg);
|
---|
| 733 | end
|
---|
| 734 | end
|
---|
| 735 | elseif isequal(ProjMode,'filter') %filtering
|
---|
| 736 | npoint=floor(linelength/DX)+1;% nbre of points in the profile (interval DX)
|
---|
| 737 | Xproj=[linelength/(2*npoint):linelength/npoint:linelength-linelength/(2*npoint)];
|
---|
| 738 | siz=size(X_sel);
|
---|
| 739 | xregij=cos(theta(ip))*Xproj'*ones(1,siz(2))+ObjectData.Coord(ip,1);
|
---|
| 740 | yregij=sin(theta(ip))*Xproj'*ones(1,siz(2))+ObjectData.Coord(ip,2);
|
---|
| 741 | xij=ones(npoint,1)*X_sel;
|
---|
| 742 | yij=ones(npoint,1)*Y_sel;
|
---|
| 743 | Aij=exp(-lambda*((xij-xregij).*(xij-xregij)+(yij-yregij).*(yij-yregij)));
|
---|
| 744 | norm=ones(1,siz(2))*Aij';
|
---|
| 745 | for ivar=1:numel(ProjVar)
|
---|
| 746 | if ~isempty(ProjVar{ivar})
|
---|
| 747 | ProjVar{ivar}=ProjVar{ivar}*Aij'./norm;
|
---|
| 748 | end
|
---|
| 749 | end
|
---|
| 750 | end
|
---|
| 751 | %prolongate the total record
|
---|
| 752 | for ivar=1:numel(ProjVar)
|
---|
| 753 | if ~isempty(ProjVar{ivar})
|
---|
| 754 | ProjLine{ivar}=[ProjLine{ivar}; ProjVar{ivar}];
|
---|
| 755 | end
|
---|
| 756 | end
|
---|
| 757 | XLine=[XLine ;(Xproj+linelengthtot)];%along line abscissa
|
---|
| 758 | linelengthtot=linelengthtot+linelength;
|
---|
| 759 | % circul=circul+(sum(U_sel))*linelength/npoint;
|
---|
| 760 | % flux=flux+(sum(V_sel))*linelength/npoint;
|
---|
| 761 | end
|
---|
| 762 | ProjData.X=XLine';
|
---|
| 763 | cur_index=1;
|
---|
| 764 | ProjData.ListVarName=[ProjData.ListVarName {XName}];
|
---|
| 765 | ProjData.VarDimName=[ProjData.VarDimName {XName}];
|
---|
| 766 | ProjData.VarAttribute{1}.long_name='abscissa along line';
|
---|
| 767 | for iselect=1:numel(VarIndex)
|
---|
| 768 | VarName=FieldData.ListVarName{VarIndex(iselect)};
|
---|
| 769 | eval(['ProjData.' VarName '=ProjLine{iselect};'])
|
---|
| 770 | ProjData.ListVarName=[ProjData.ListVarName {VarName}];
|
---|
| 771 | ProjData.VarDimName=[ProjData.VarDimName {XName}];
|
---|
| 772 | ProjData.VarAttribute{iselect}=FieldData.VarAttribute{VarIndex(iselect)};
|
---|
[71] | 773 | if strcmp(ProjMode,'projection')
|
---|
| 774 | ProjData.VarAttribute{iselect}.Role='discrete';
|
---|
| 775 | else
|
---|
| 776 | ProjData.VarAttribute{iselect}.Role='continuous';
|
---|
| 777 | end
|
---|
[8] | 778 | end
|
---|
| 779 |
|
---|
| 780 | %case of structured coordinates
|
---|
| 781 | elseif numel(VarType.coord)>=2 & VarType.coord(1:2) > 0;
|
---|
| 782 | if ~isequal(ObjectData.Style,'line')% exclude polyline
|
---|
| 783 | errormsg=['no projection available on ' ObjectData.Style 'for structured coordinates']; %
|
---|
| 784 | else
|
---|
| 785 | test_Amat=1;%image or 2D matrix
|
---|
| 786 | test_interp2=0;%default
|
---|
| 787 | % if ~isempty(VarType.coord_y)
|
---|
| 788 | AYName=FieldData.ListVarName{VarType.coord(1)};
|
---|
| 789 | AXName=FieldData.ListVarName{VarType.coord(2)};
|
---|
| 790 | eval(['AX=FieldData.' AXName ';']);% set of x positions
|
---|
| 791 | eval(['AY=FieldData.' AYName ';']);% set of y positions
|
---|
| 792 | AName=FieldData.ListVarName{VarIndex(1)};
|
---|
| 793 | eval(['A=FieldData.' AName ';']);% scalar
|
---|
| 794 | npxy=size(A);
|
---|
| 795 | npx=npxy(2);
|
---|
| 796 | npy=npxy(1);
|
---|
| 797 | if numel(AX)==2
|
---|
| 798 | DX=(AX(2)-AX(1))/(npx-1);
|
---|
| 799 | else
|
---|
| 800 | DX_vec=diff(AX);
|
---|
| 801 | DX=max(DX_vec);
|
---|
| 802 | DX_min=min(DX_vec);
|
---|
| 803 | if (DX-DX_min)>0.0001*abs(DX)
|
---|
| 804 | test_interp2=1;
|
---|
| 805 | DX=DX_min;
|
---|
| 806 | end
|
---|
| 807 | end
|
---|
| 808 | if numel(AY)==2
|
---|
| 809 | DY=(AY(2)-AY(1))/(npy-1);
|
---|
| 810 | else
|
---|
| 811 | DY_vec=diff(AY);
|
---|
| 812 | DY=max(DY_vec);
|
---|
| 813 | DY_min=min(DY_vec);
|
---|
| 814 | if (DY-DY_min)>0.0001*abs(DY)
|
---|
| 815 | test_interp2=1;
|
---|
| 816 | DY=DY_min;
|
---|
| 817 | end
|
---|
| 818 | end
|
---|
| 819 | AXI=linspace(AX(1),AX(end), npx);%set of x positions for the interpolated input data
|
---|
| 820 | AYI=linspace(AY(1),AY(end), npy);%set of x positions for the interpolated input data
|
---|
| 821 | if isfield(ObjectData,'DX')
|
---|
| 822 | DXY_line=ObjectData.DX;%mesh on the projection line
|
---|
| 823 | else
|
---|
| 824 | DXY_line=sqrt(abs(DX*DY));% mesh on the projection line
|
---|
| 825 | end
|
---|
| 826 | dlinx=ObjectData.Coord(2,1)-ObjectData.Coord(1,1);
|
---|
| 827 | dliny=ObjectData.Coord(2,2)-ObjectData.Coord(1,2);
|
---|
| 828 | linelength=sqrt(dlinx*dlinx+dliny*dliny);
|
---|
| 829 | theta=angle(dlinx+i*dliny);%angle of the line
|
---|
| 830 | if isfield(FieldData,'RangeX')
|
---|
| 831 | XMin=min(FieldData.RangeX);%shift of the origin on the line
|
---|
| 832 | else
|
---|
| 833 | XMin=0;
|
---|
| 834 | end
|
---|
| 835 | eval(['ProjData.' AXName '=linspace(XMin,XMin+linelength,linelength/DXY_line+1);'])%abscissa of the new pixels along the line
|
---|
| 836 | y=linspace(-width,width,2*width/DXY_line+1);%ordintes of the new pixels (coordinate across the line)
|
---|
| 837 | eval(['npX=length(ProjData.' AXName ');'])
|
---|
| 838 | npY=length(y); %TODO: utiliser proj_grid
|
---|
| 839 | eval(['[X,Y]=meshgrid(ProjData.' AXName ',y);'])%grid in the line coordinates
|
---|
| 840 | XIMA=ObjectData.Coord(1,1)+(X-XMin)*cos(theta)-Y*sin(theta);
|
---|
| 841 | YIMA=ObjectData.Coord(1,2)+(X-XMin)*sin(theta)+Y*cos(theta);
|
---|
| 842 | XIMA=(XIMA-AX(1))/DX+1;% index of the original image along x
|
---|
| 843 | YIMA=(YIMA-AY(1))/DY+1;% index of the original image along y
|
---|
| 844 | XIMA=reshape(round(XIMA),1,npX*npY);%indices reorganized in 'line'
|
---|
| 845 | YIMA=reshape(round(YIMA),1,npX*npY);
|
---|
| 846 | flagin=XIMA>=1 & XIMA<=npx & YIMA >=1 & YIMA<=npy;%flagin=1 inside the original image
|
---|
| 847 | ind_in=find(flagin);
|
---|
| 848 | ind_out=find(~flagin);
|
---|
| 849 | ICOMB=(XIMA-1)*npy+YIMA;
|
---|
| 850 | ICOMB=ICOMB(flagin);%index corresponding to XIMA and YIMA in the aligned original image vec_A
|
---|
| 851 | nbcolor=1; %color images
|
---|
| 852 | if numel(npxy)==2
|
---|
| 853 | nbcolor=1;
|
---|
| 854 | elseif length(npxy)==3
|
---|
| 855 | nbcolor=npxy(3);
|
---|
| 856 | else
|
---|
| 857 | errormsg='multicomponent field not projected';
|
---|
| 858 | display(errormsg)
|
---|
| 859 | return
|
---|
| 860 | end
|
---|
| 861 | nbvar=length(ProjData.ListVarName);% number of var from previous cells
|
---|
| 862 | ProjData.ListVarName=[ProjData.ListVarName {AXName}];
|
---|
| 863 | ProjData.VarDimName=[ProjData.VarDimName {AXName}];
|
---|
| 864 | for ivar=VarIndex
|
---|
| 865 | VarName{ivar}=FieldData.ListVarName{ivar};
|
---|
| 866 | if test_interp2% interpolate on new grid
|
---|
| 867 | eval(['FieldData.' VarName{ivar} '=interp2(FieldData.' AXName ',FieldData.' AYName ',FieldData.' VarName{ivar} ',AXI,AYI'');']) %TO TEST
|
---|
| 868 | end
|
---|
| 869 | eval(['vec_A=reshape(squeeze(FieldData.' VarName{ivar} '),npx*npy,nbcolor);']) %put the original image in colum
|
---|
| 870 | if nbcolor==1
|
---|
| 871 | vec_B(ind_in)=vec_A(ICOMB);
|
---|
| 872 | vec_B(ind_out)=zeros(size(ind_out));
|
---|
| 873 | A_out=reshape(vec_B,npY,npX);
|
---|
| 874 | eval(['ProjData.' VarName{ivar} '=((sum(A_out,1)/npY))'';']);
|
---|
| 875 | elseif nbcolor==3
|
---|
| 876 | vec_B(ind_in,[1:3])=vec_A(ICOMB,:);
|
---|
| 877 | vec_B(ind_out,1)=zeros(size(ind_out));
|
---|
| 878 | vec_B(ind_out,2)=zeros(size(ind_out));
|
---|
| 879 | vec_B(ind_out,3)=zeros(size(ind_out));
|
---|
| 880 | A_out=reshape(vec_B,npY,npX,nbcolor);
|
---|
| 881 | eval(['ProjData.' VarName{ivar} '=squeeze(sum(A_out,1)/npY);']);
|
---|
| 882 | end
|
---|
| 883 | ProjData.ListVarName=[ProjData.ListVarName VarName{ivar} ];
|
---|
| 884 | ProjData.VarDimName=[ProjData.VarDimName {AXName}];%to generalize with the initial name of the x coordinate
|
---|
[71] | 885 | ProjData.VarAttribute{ivar}.Role='continuous';% for plot with continuous line
|
---|
[8] | 886 | end
|
---|
| 887 | if testU
|
---|
| 888 | eval(['vector_x =ProjData.' VarName{VarType.vector_x} ';'])
|
---|
| 889 | eval(['vector_y =ProjData.' VarName{VarType.vector_y} ';'])
|
---|
| 890 | eval(['ProjData.' VarName{VarType.vector_x} '=cos(theta)*vector_x+sin(theta)*vector_y;'])
|
---|
| 891 | eval(['ProjData.' VarName{VarType.vector_y} '=-sin(theta)*vector_x+cos(theta)*vector_y;'])
|
---|
| 892 | end
|
---|
| 893 | ProjData.VarAttribute{nbvar+1}.long_name='abscissa along line';
|
---|
| 894 | if nbcolor==3
|
---|
[46] | 895 | ProjData.VarDimName{end}={AXName,'rgb'};
|
---|
[8] | 896 | end
|
---|
| 897 | end
|
---|
| 898 | end
|
---|
| 899 | end
|
---|
| 900 |
|
---|
| 901 | % %shotarter case for horizontal or vertical line (A FAIRE
|
---|
| 902 | % % Rangx=[0.5 npx-0.5];%image coordiantes of corners
|
---|
| 903 | % % Rangy=[npy-0.5 0.5];
|
---|
| 904 | % % if isfield(Calib,'Pxcmx')&isfield(Calib,'Pxcmy')%old calib
|
---|
| 905 | % % Rangx=Rangx/Calib.Pxcmx;
|
---|
| 906 | % % Rangy=Rangy/Calib.Pxcmy;
|
---|
| 907 | % % else
|
---|
| 908 | % % [Rangx]=phys_XYZ(Calib,Rangx,[0.5 0.5],[0 0]);%case of translations without rotation and quadratic deformation
|
---|
| 909 | % % [xx,Rangy]=phys_XYZ(Calib,[0.5 0.5],Rangy,[0 0]);
|
---|
| 910 | % % end
|
---|
| 911 | %
|
---|
| 912 | % % test_scal=0;%default% 3- 'UserData':(get(handles.Tag,'UserData')
|
---|
| 913 |
|
---|
| 914 |
|
---|
| 915 | %-----------------------------------------------------------------
|
---|
| 916 | %project on a plane
|
---|
| 917 | % AJOUTER flux,circul,error
|
---|
| 918 | function [ProjData,errormsg] = proj_plane(FieldData, ObjectData)
|
---|
| 919 | %-----------------------------------------------------------------
|
---|
| 920 |
|
---|
| 921 | %initialisation of the input parameters of the projection plane
|
---|
| 922 | %-----------------------------------------------------------------
|
---|
| 923 | ProjMode='projection';%direct projection by default
|
---|
| 924 | if isfield(ObjectData,'ProjMode'),ProjMode=ObjectData.ProjMode; end;
|
---|
| 925 |
|
---|
| 926 | %axis origin
|
---|
| 927 | if isempty(ObjectData.Coord)
|
---|
| 928 | ObjectData.Coord(1,1)=0;%origin of the plane set to [0 0] by default
|
---|
| 929 | ObjectData.Coord(1,2)=0;
|
---|
| 930 | ObjectData.Coord(1,3)=0;
|
---|
| 931 | end
|
---|
| 932 |
|
---|
| 933 | %rotation angles
|
---|
| 934 | Phi=0;%default
|
---|
| 935 | Theta=0;
|
---|
| 936 | Psi=0;
|
---|
| 937 | if isfield(ObjectData,'Phi')&& ~isempty(ObjectData.Phi)
|
---|
| 938 | Phi=(pi/180)*ObjectData.Phi;%first Euler angle in radian
|
---|
| 939 | end
|
---|
| 940 | if isfield(ObjectData,'Theta')&& ~isempty(ObjectData.Theta)
|
---|
| 941 | Theta=(pi/180)*ObjectData.Theta;%second Euler angle in radian
|
---|
| 942 | end
|
---|
| 943 | if isfield(ObjectData,'Psi')&& ~isempty(ObjectData.Psi)
|
---|
| 944 | Psi=(pi/180)*ObjectData.Psi;%third Euler angle in radian
|
---|
| 945 | end
|
---|
| 946 |
|
---|
| 947 | %components of the unity vector normal to the projection plane
|
---|
| 948 | NormVec_X=-sin(Phi)*sin(Theta);
|
---|
| 949 | NormVec_Y=cos(Phi)*sin(Theta);
|
---|
| 950 | NormVec_Z=cos(Theta);
|
---|
| 951 |
|
---|
| 952 | % test for 3D fields
|
---|
| 953 | test3D=0;
|
---|
[72] | 954 | if isfield(FieldData,'nb_dim')
|
---|
[77] | 955 | test3D=isequal(FieldData.nb_dim,3);
|
---|
[8] | 956 | end
|
---|
| 957 | test3C=test3D; %default 3 vel components
|
---|
| 958 |
|
---|
| 959 | %mesh sizes DX and DY
|
---|
| 960 | DX=0;
|
---|
| 961 | DY=0; %default
|
---|
| 962 | if isfield(ObjectData,'DX')&~isempty(ObjectData.DX)
|
---|
| 963 | DX=abs(ObjectData.DX);%mesh of interpolation points
|
---|
| 964 | end
|
---|
| 965 | if isfield(ObjectData,'DY')&~isempty(ObjectData.DY)
|
---|
| 966 | DY=abs(ObjectData.DY);%mesh of interpolation points
|
---|
| 967 | end
|
---|
| 968 | if ~isequal(ProjMode,'projection') & (DX==0|DY==0)
|
---|
| 969 | errormsg='DX or DY missing';
|
---|
| 970 | display(errormsg)
|
---|
| 971 | return
|
---|
| 972 | end
|
---|
| 973 |
|
---|
| 974 | %extrema along each axis
|
---|
| 975 | testXMin=0;
|
---|
| 976 | testXMax=0;
|
---|
| 977 | testYMin=0;
|
---|
| 978 | testYMax=0;
|
---|
| 979 | if isfield(ObjectData,'RangeX')
|
---|
| 980 | XMin=min(ObjectData.RangeX);
|
---|
| 981 | XMax=max(ObjectData.RangeX);
|
---|
| 982 | testXMin=XMax>XMin;
|
---|
| 983 | testXMax=1;
|
---|
| 984 | end
|
---|
| 985 | if isfield(ObjectData,'RangeY')
|
---|
| 986 | YMin=min(ObjectData.RangeY);
|
---|
| 987 | YMax=max(ObjectData.RangeY);
|
---|
| 988 | testYMin=YMax>YMin;
|
---|
| 989 | testYMax=1;
|
---|
| 990 | end
|
---|
| 991 | width=0;%default width of the projection band
|
---|
| 992 | if isfield(ObjectData,'RangeZ')
|
---|
| 993 | width=max(ObjectData.RangeZ);
|
---|
| 994 | end
|
---|
| 995 |
|
---|
| 996 | % initiate Matlab structure for physical field
|
---|
| 997 | ProjData=proj_heading(FieldData,ObjectData);
|
---|
| 998 | ProjData.NbDim=2;
|
---|
| 999 | ProjData.ListDimName={};%name of dimension
|
---|
| 1000 | ProjData.DimValue=[];%values of dimension (nbre of vectors)
|
---|
| 1001 | ProjData.ListVarName={};
|
---|
| 1002 | ProjData.VarDimName={};
|
---|
| 1003 |
|
---|
| 1004 | error=0;%default
|
---|
| 1005 | flux=0;
|
---|
| 1006 | testfalse=0;
|
---|
| 1007 | ListIndex={};
|
---|
| 1008 |
|
---|
| 1009 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
---|
| 1010 | %group the variables (fields of 'FieldData') in cells of variables with the same dimensions
|
---|
| 1011 | %-----------------------------------------------------------------
|
---|
| 1012 | idimvar=0;
|
---|
| 1013 | [CellVarIndex,NbDim,VarTypeCell,errormsg]=find_field_indices(FieldData);
|
---|
| 1014 | if ~isempty(errormsg)
|
---|
| 1015 | errormsg=['error in proj_field/proj_plane:' errormsg];
|
---|
| 1016 | return
|
---|
| 1017 | end
|
---|
| 1018 | %LOOP ON GROUPS OF VARIABLES SHARING THE SAME DIMENSIONS
|
---|
| 1019 | % CellVarIndex=cells of variable index arrays
|
---|
| 1020 | ivar_new=0; % index of the current variable in the projected field
|
---|
| 1021 | icoord=0;
|
---|
| 1022 | nbcoord=0;%number of added coordinate variables brought by projection
|
---|
| 1023 | for icell=1:length(CellVarIndex)
|
---|
| 1024 | if NbDim(icell)<2
|
---|
| 1025 | continue
|
---|
| 1026 | end
|
---|
| 1027 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName
|
---|
| 1028 | VarType=VarTypeCell{icell};
|
---|
| 1029 | ivar_X=VarType.coord_x;
|
---|
| 1030 | ivar_Y=VarType.coord_y;
|
---|
| 1031 | ivar_Z=VarType.coord_z;
|
---|
| 1032 | ivar_U=VarType.vector_x;
|
---|
| 1033 | ivar_V=VarType.vector_y;
|
---|
| 1034 | ivar_W=VarType.vector_z;
|
---|
| 1035 | ivar_C=VarType.scalar ;
|
---|
| 1036 | ivar_Anc=VarType.ancillary;
|
---|
| 1037 | test_anc=zeros(size(VarIndex));
|
---|
| 1038 | test_anc(ivar_Anc)=ones(size(ivar_Anc));
|
---|
| 1039 | ivar_F=VarType.warnflag;
|
---|
| 1040 | ivar_FF=VarType.errorflag;
|
---|
| 1041 | testX=~isempty(ivar_X) && ~isempty(ivar_Y);
|
---|
| 1042 | %DimIndices=FieldData.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell)
|
---|
| 1043 | DimCell=FieldData.VarDimName{VarIndex(1)};
|
---|
| 1044 | if ischar(DimCell)
|
---|
| 1045 | DimCell={DimCell};%name of dimensions
|
---|
| 1046 | end
|
---|
| 1047 |
|
---|
| 1048 | %case of input fields with unstructured coordinates
|
---|
| 1049 | if testX
|
---|
[77] | 1050 | XName=FieldData.ListVarName{ivar_X};
|
---|
| 1051 | YName=FieldData.ListVarName{ivar_Y};
|
---|
[8] | 1052 | eval(['coord_x=FieldData.' XName ';'])
|
---|
| 1053 | eval(['coord_y=FieldData.' YName ';'])
|
---|
| 1054 | if length(ivar_Z)==1
|
---|
[77] | 1055 | ZName=FieldData.ListVarName{ivar_Z};
|
---|
[8] | 1056 | eval(['coord_z=FieldData.' ZName ';'])
|
---|
| 1057 | end
|
---|
| 1058 |
|
---|
| 1059 | % translate initial coordinates
|
---|
| 1060 | coord_x=coord_x-ObjectData.Coord(1,1);
|
---|
| 1061 | coord_y=coord_y-ObjectData.Coord(1,2);
|
---|
| 1062 | if ~isempty(ivar_Z)
|
---|
| 1063 | coord_z=coord_z-ObjectData.Coord(1,3);
|
---|
| 1064 | end
|
---|
| 1065 |
|
---|
| 1066 | % selection of the vectors in the projection range (3D case)
|
---|
| 1067 | if length(ivar_Z)==1 && width > 0
|
---|
| 1068 | %components of the unitiy vector normal to the projection plane
|
---|
| 1069 | fieldZ=NormVec_X*coord_x + NormVec_Y*coord_y+ NormVec_Z*coord_z;% distance to the plane
|
---|
| 1070 | indcut=find(abs(fieldZ) <= width);
|
---|
| 1071 | for ivar=VarIndex
|
---|
[77] | 1072 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1073 | % eval(['size(FieldData.' VarName ')'])
|
---|
[8] | 1074 | eval(['FieldData.' VarName '=FieldData.' VarName '(indcut);'])
|
---|
| 1075 | % end
|
---|
| 1076 | % A VOIR : CAS DE VAR STRUCTUREE MAIS PAS GRILLE REGULIERE : INTERPOLER SUR GRILLE REGULIERE
|
---|
| 1077 | end
|
---|
| 1078 | coord_x=coord_x(indcut);
|
---|
| 1079 | coord_y=coord_y(indcut);
|
---|
| 1080 | coord_z=coord_z(indcut);
|
---|
| 1081 | end
|
---|
| 1082 |
|
---|
| 1083 | %rotate coordinates if needed
|
---|
| 1084 | if isequal(Phi,0)
|
---|
| 1085 | coord_X=coord_x;
|
---|
| 1086 | coord_Y=coord_y;
|
---|
| 1087 | if ~isequal(Theta,0)
|
---|
| 1088 | coord_Y=coord_Y *cos(Theta);
|
---|
| 1089 | end
|
---|
| 1090 | else
|
---|
| 1091 | coord_X=(coord_x *cos(Phi) + coord_y* sin(Phi));
|
---|
| 1092 | coord_Y=(-coord_x *sin(Phi) + coord_y *cos(Phi))*cos(Theta);
|
---|
| 1093 | end
|
---|
| 1094 | if ~isempty(ivar_Z)
|
---|
| 1095 | coord_Y=coord_Y+coord_z *sin(Theta);
|
---|
| 1096 | end
|
---|
| 1097 | if ~isequal(Psi,0)
|
---|
| 1098 | coord_X=(coord_X *cos(Psi) - coord_Y* sin(Psi));%A VERIFIER
|
---|
| 1099 | coord_Y=(coord_X *sin(Psi) + coord_Y* cos(Psi));
|
---|
| 1100 | end
|
---|
| 1101 |
|
---|
| 1102 | %restriction to the range of x and y if imposed
|
---|
| 1103 | testin=ones(size(coord_X)); %default
|
---|
| 1104 | testbound=0;
|
---|
| 1105 | if testXMin
|
---|
| 1106 | testin=testin & (coord_X >= XMin);
|
---|
| 1107 | testbound=1;
|
---|
| 1108 | end
|
---|
| 1109 | if testXMax
|
---|
| 1110 | testin=testin & (coord_X <= XMax);
|
---|
| 1111 | testbound=1;
|
---|
| 1112 | end
|
---|
| 1113 | if testYMin
|
---|
| 1114 | testin=testin & (coord_Y >= YMin);
|
---|
| 1115 | testbound=1;
|
---|
| 1116 | end
|
---|
| 1117 | if testYMin
|
---|
| 1118 | testin=testin & (coord_Y <= YMax);
|
---|
| 1119 | testbound=1;
|
---|
| 1120 | end
|
---|
| 1121 | if testbound
|
---|
| 1122 | indcut=find(testin);
|
---|
| 1123 | for ivar=VarIndex
|
---|
| 1124 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1125 | eval(['FieldData.' VarName '=FieldData.' VarName '(indcut);'])
|
---|
| 1126 | end
|
---|
| 1127 | coord_X=coord_X(indcut);
|
---|
| 1128 | coord_Y=coord_Y(indcut);
|
---|
| 1129 | if length(ivar_Z)==1
|
---|
| 1130 | coord_Z=coord_Z(indcut);
|
---|
| 1131 | end
|
---|
| 1132 | end
|
---|
| 1133 | % different cases of projection
|
---|
| 1134 | if isequal(ObjectData.ProjMode,'projection')
|
---|
[42] | 1135 | %the list of dimension
|
---|
| 1136 | ProjData.ListDimName=[ProjData.ListDimName FieldData.VarDimName(VarIndex(1))];%add the point index to the list of dimensions
|
---|
[8] | 1137 | ProjData.DimValue=[ProjData.DimValue length(coord_X)];
|
---|
| 1138 | nbvar=0;
|
---|
| 1139 | for ivar=VarIndex %transfer variables to the projection plane
|
---|
| 1140 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1141 | if ivar==ivar_X %x coordinate
|
---|
| 1142 | eval(['ProjData.' VarName '=coord_X;'])
|
---|
| 1143 | elseif ivar==ivar_Y % y coordinate
|
---|
| 1144 | eval(['ProjData.' VarName '=coord_Y;'])
|
---|
| 1145 | elseif isempty(ivar_Z) || ivar~=ivar_Z % other variables (except Z coordinate wyhich is not reproduced)
|
---|
| 1146 | eval(['ProjData.' VarName '=FieldData.' VarName ';'])
|
---|
| 1147 | end
|
---|
| 1148 | if isempty(ivar_Z) || ivar~=ivar_Z
|
---|
| 1149 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
[42] | 1150 | ProjData.VarDimName=[ProjData.VarDimName DimCell];
|
---|
[8] | 1151 | nbvar=nbvar+1;
|
---|
| 1152 | if isfield(FieldData,'VarAttribute') & length(FieldData.VarAttribute) >=ivar
|
---|
| 1153 | ProjData.VarAttribute{nbvar}=FieldData.VarAttribute{ivar};
|
---|
| 1154 | end
|
---|
| 1155 | end
|
---|
| 1156 | end
|
---|
| 1157 | elseif isequal(ObjectData.ProjMode,'interp')||isequal(ObjectData.ProjMode,'filter')%interpolate data on a regular grid
|
---|
| 1158 | coord_x_proj=[XMin:DX:XMax];
|
---|
| 1159 | coord_y_proj=[YMin:DY:YMax];
|
---|
| 1160 | DimCell={'coord_y','coord_x'};
|
---|
| 1161 | ProjData.ListVarName={'coord_y','coord_x'};
|
---|
| 1162 | ProjData.VarDimName={'coord_y','coord_x'};
|
---|
[77] | 1163 | nbcoord=2;
|
---|
[8] | 1164 | ProjData.coord_y=[YMin YMax];
|
---|
| 1165 | ProjData.coord_x=[XMin XMax];
|
---|
| 1166 | if isempty(ivar_X), ivar_X=0; end;
|
---|
| 1167 | if isempty(ivar_Y), ivar_Y=0; end;
|
---|
| 1168 | if isempty(ivar_Z), ivar_Z=0; end;
|
---|
| 1169 | if isempty(ivar_U), ivar_U=0; end;
|
---|
| 1170 | if isempty(ivar_V), ivar_V=0; end;
|
---|
| 1171 | if isempty(ivar_W), ivar_W=0; end;
|
---|
| 1172 | if isempty(ivar_F), ivar_F=0; end;
|
---|
| 1173 | if isempty(ivar_FF), ivar_FF=0; end;
|
---|
| 1174 | if ~isequal(ivar_FF,0)
|
---|
| 1175 | VarName_FF=FieldData.ListVarName{ivar_FF};
|
---|
| 1176 | eval(['indsel=find(FieldData.' VarName_FF '==0);'])
|
---|
| 1177 | coord_X=coord_X(indsel);
|
---|
| 1178 | coord_Y=coord_Y(indsel);
|
---|
| 1179 | end
|
---|
| 1180 | FF=zeros(1,length(coord_y_proj)*length(coord_x_proj));
|
---|
| 1181 | testFF=0;
|
---|
| 1182 | for ivar=VarIndex
|
---|
| 1183 | VarName=FieldData.ListVarName{ivar};
|
---|
[46] | 1184 | if ~( ivar==ivar_X || ivar==ivar_Y || ivar==ivar_Z || ivar==ivar_F || ivar==ivar_FF || test_anc(ivar)==1)
|
---|
[8] | 1185 | ivar_new=ivar_new+1;
|
---|
| 1186 | ProjData.ListVarName=[ProjData.ListVarName {VarName}];
|
---|
| 1187 | ProjData.VarDimName=[ProjData.VarDimName {DimCell}];
|
---|
[46] | 1188 | if isfield(FieldData,'VarAttribute') && length(FieldData.VarAttribute) >=ivar
|
---|
[8] | 1189 | ProjData.VarAttribute{ivar_new+nbcoord}=FieldData.VarAttribute{ivar};
|
---|
| 1190 | end
|
---|
| 1191 | if ~isequal(ivar_FF,0)
|
---|
| 1192 | eval(['FieldData.' VarName '=FieldData.' VarName '(indsel);'])
|
---|
| 1193 | end
|
---|
[46] | 1194 | eval(['ProjData.' VarName '=griddata_uvmat(double(coord_X),double(coord_Y),double(FieldData.' VarName '),coord_x_proj,coord_y_proj'');'])
|
---|
[8] | 1195 | eval(['varline=reshape(ProjData.' VarName ',1,length(coord_y_proj)*length(coord_x_proj));'])
|
---|
| 1196 | FFlag= isnan(varline); %detect undefined values NaN
|
---|
| 1197 | indnan=find(FFlag);
|
---|
| 1198 | if~isempty(indnan)
|
---|
| 1199 | varline(indnan)=zeros(size(indnan));
|
---|
| 1200 | eval(['ProjData.' VarName '=reshape(varline,length(coord_y_proj),length(coord_x_proj));'])
|
---|
| 1201 | FF(indnan)=ones(size(indnan));
|
---|
| 1202 | testFF=1;
|
---|
| 1203 | end
|
---|
| 1204 | if ivar==ivar_U
|
---|
| 1205 | ivar_U=ivar_new;
|
---|
| 1206 | end
|
---|
| 1207 | if ivar==ivar_V
|
---|
| 1208 | ivar_V=ivar_new;
|
---|
| 1209 | end
|
---|
| 1210 | if ivar==ivar_W
|
---|
| 1211 | ivar_W=ivar_new;
|
---|
| 1212 | end
|
---|
| 1213 | end
|
---|
| 1214 | end
|
---|
| 1215 | if testFF
|
---|
| 1216 | ProjData.FF=reshape(FF,length(coord_y_proj),length(coord_x_proj));
|
---|
| 1217 | ProjData.ListVarName=[ProjData.ListVarName {'FF'}];
|
---|
| 1218 | ProjData.VarDimName=[ProjData.VarDimName {DimCell}];
|
---|
| 1219 | ProjData.VarAttribute{ivar_new+1+nbcoord}.Role='errorflag';
|
---|
| 1220 | end
|
---|
| 1221 | end
|
---|
| 1222 | %case of fields defined on a structured grid
|
---|
| 1223 | else
|
---|
| 1224 | AYName=FieldData.ListVarName{VarType.coord(1)};
|
---|
| 1225 | AXName=FieldData.ListVarName{VarType.coord(2)};
|
---|
| 1226 | eval(['AX=FieldData.' AXName ';'])
|
---|
| 1227 | eval(['AY=FieldData.' AYName ';'])
|
---|
| 1228 | VarName=FieldData.ListVarName{VarIndex(1)};
|
---|
| 1229 | eval(['DimValue=size(FieldData.' VarName ');'])
|
---|
[42] | 1230 | ListDimName=FieldData.VarDimName{VarIndex(1)};
|
---|
[8] | 1231 | ProjData.ListVarName=[{AYName} {AXName} ProjData.ListVarName]; %TODO: check if it already exists in Projdata (several cells)
|
---|
| 1232 | ProjData.VarDimName=[{AYName} {AXName} ProjData.VarDimName];
|
---|
| 1233 | nbcolor=1; %default
|
---|
| 1234 | for idim=1:length(ListDimName)
|
---|
| 1235 | DimName=ListDimName{idim};
|
---|
| 1236 | if isequal(DimName,'rgb')|isequal(DimName,'nb_coord')|isequal(DimName,'nb_coord_i')
|
---|
| 1237 | nbcolor=DimValue(idim);
|
---|
| 1238 | DimIndices(idim)=[];
|
---|
| 1239 | DimValue(idim)=[];
|
---|
| 1240 | end
|
---|
| 1241 | if isequal(DimName,'nb_coord_j')% NOTE: CASE OF TENSOR NOT TREATED
|
---|
| 1242 | DimIndices(idim)=[];
|
---|
| 1243 | DimValue(idim)=[];
|
---|
| 1244 | end
|
---|
| 1245 | end
|
---|
| 1246 | ind_1=find(DimValue==1);
|
---|
| 1247 | DimIndices(ind_1)=[]; %suppress singleton dimensions
|
---|
| 1248 | % indxy=find(DimVarIndex(DimIndices));%select dimension variables (DimIndices non zero)
|
---|
| 1249 | nb_dim=length(DimIndices);%number of space dimensions
|
---|
| 1250 | Coord_z=[];
|
---|
| 1251 | Coord_y=[];
|
---|
| 1252 | Coord_x=[];
|
---|
| 1253 |
|
---|
| 1254 | for idim=1:nb_dim %loop on space dimensions
|
---|
| 1255 | test_interp(idim)=0;%test for coordiate interpolation (non regular grid), =0 by default
|
---|
| 1256 | test_coord(idim)=0;%test for defined coordinates, =0 by default
|
---|
| 1257 | ivar=DimVarIndex(DimIndices(idim));% index of the variable corresponding to the current dimension
|
---|
| 1258 | if ~isequal(ivar,0)% a variable corresponds to the current dimension
|
---|
| 1259 | eval(['Coord{idim}=FieldData.' FieldData.ListVarName{ivar} ';']) ;% position for the first index
|
---|
| 1260 | DCoord=diff(Coord{idim});
|
---|
| 1261 | DCoord_min(idim)=min(DCoord);
|
---|
| 1262 | DCoord_max=max(DCoord);
|
---|
| 1263 | test_direct(idim)=DCoord_max>0;% =1 for increasing values, 0 otherwise
|
---|
| 1264 | test_direct_min=DCoord_min(idim)>0;% =1 for increasing values, 0 otherwise
|
---|
| 1265 | if ~isequal(test_direct(idim),test_direct_min)
|
---|
[38] | 1266 | msgbox_uvmat('ERROR',['non monotonic dimension variable # ' num2str(idim) ' in proj_field.m'])
|
---|
[8] | 1267 | return
|
---|
| 1268 | end
|
---|
| 1269 | test_interp(idim)=(DCoord_max-DCoord_min(idim))> 0.0001*abs(DCoord_max);% test grid regularity
|
---|
| 1270 | test_coord(idim)=1;
|
---|
| 1271 |
|
---|
| 1272 | else % no variable associated with the first dimension, look for variable attributes Coord_1, _2 or _3
|
---|
| 1273 | Coord_i_str=['Coord_' num2str(idim)];
|
---|
| 1274 | DCoord_min(idim)=1;%default
|
---|
| 1275 | Coord{idim}=[0.5 DimValue(idim)-0.5];
|
---|
| 1276 | test_direct(idim)=1;
|
---|
| 1277 | end
|
---|
| 1278 | end
|
---|
| 1279 | if nb_dim==2
|
---|
| 1280 | if DY==0
|
---|
| 1281 | DY=abs(DCoord_min(1));
|
---|
| 1282 | end
|
---|
| 1283 | npY=1+round(abs(Coord{1}(end)-Coord{1}(1))/DY);%nbre of points after interpolation
|
---|
| 1284 | npy=1+round(abs(Coord{1}(end)-Coord{1}(1))/abs(DCoord_min(1)));%nbre of points after possible interpolation on a regular grid
|
---|
| 1285 | if DX==0
|
---|
| 1286 | DX=abs(DCoord_min(2));
|
---|
| 1287 | end
|
---|
| 1288 | npX=1+round(abs(Coord{2}(end)-Coord{2}(1))/DX);%nbre of points after interpol
|
---|
| 1289 | npx=1+round(abs(Coord{2}(end)-Coord{2}(1))/abs(DCoord_min(2)));%nbre of points after possible interpolation on a regular grid
|
---|
| 1290 | Coord_y=linspace(Coord{1}(1),Coord{1}(end),npY);
|
---|
| 1291 | test_direct_y=test_direct(1);
|
---|
| 1292 | Coord_x=linspace(Coord{2}(1),Coord{2}(end),npX);
|
---|
| 1293 | test_direct_x=test_direct(2);
|
---|
| 1294 | DAX=DCoord_min(2);
|
---|
| 1295 | DAY=DCoord_min(1);
|
---|
| 1296 | elseif nb_dim==3
|
---|
| 1297 | DZ=abs(DCoord_min(1));
|
---|
| 1298 | npz=1+round(abs(Coord{1}(end)-Coord{1}(1))/DZ);%nbre of points after interpolation
|
---|
| 1299 | if DY==0
|
---|
| 1300 | DY=abs(DCoord_min(2));
|
---|
| 1301 | end
|
---|
| 1302 | npY=1+round(abs(Coord{2}(end)-Coord{2}(1))/DY);%nbre of points after interpol
|
---|
| 1303 | npy=1+round(abs(Coord{2}(end)-Coord{2}(1))/abs(DCoord_min(2)));%nbre of points before interpol
|
---|
| 1304 | if DX==0
|
---|
| 1305 | DX=abs(DCoord_min(3));
|
---|
| 1306 | end
|
---|
| 1307 | npX=1+round(abs(Coord{3}(end)-Coord{3}(1))/DX);%nbre of points after interpol
|
---|
| 1308 | npx=1+round(abs(Coord{3}(end)-Coord{3}(1))/abs(DCoord_min(3)));%nbre of points before interpol
|
---|
| 1309 | Coord_z=linspace(Coord{1}(1),Coord{1}(end),npz);
|
---|
| 1310 | test_direct_z=test_direct(1);
|
---|
| 1311 | Coord_y=linspace(Coord{2}(1),Coord{2}(end),npY);
|
---|
| 1312 | test_direct_y=test_direct(2);
|
---|
| 1313 | Coord_x=linspace(Coord{3}(1),Coord{3}(end),npX);
|
---|
| 1314 | test_direct_x=test_direct(3);
|
---|
| 1315 | end
|
---|
| 1316 | minAX=min(Coord_x);
|
---|
| 1317 | maxAX=max(Coord_x);
|
---|
| 1318 | minAY=min(Coord_y);
|
---|
| 1319 | maxAY=max(Coord_y);
|
---|
| 1320 | xcorner=[minAX maxAX minAX maxAX]-ObjectData.Coord(1,1);
|
---|
| 1321 | ycorner=[maxAY maxAY minAY minAY]-ObjectData.Coord(1,2);
|
---|
| 1322 | xcor_new=xcorner*cos(Phi)+ycorner*sin(Phi);%coord new frame
|
---|
| 1323 | ycor_new=-xcorner*sin(Phi)+ycorner*cos(Phi);
|
---|
| 1324 | if ~testXMax
|
---|
| 1325 | XMax=max(xcor_new);
|
---|
| 1326 | end
|
---|
| 1327 | if ~testXMin
|
---|
| 1328 | XMin=min(xcor_new);
|
---|
| 1329 | end
|
---|
| 1330 | if ~testYMax
|
---|
| 1331 | YMax=max(ycor_new);
|
---|
| 1332 | end
|
---|
| 1333 | if ~testYMin
|
---|
| 1334 | YMin=min(ycor_new);
|
---|
| 1335 | end
|
---|
| 1336 | DXinit=(maxAX-minAX)/(npx-1);
|
---|
| 1337 | DYinit=(maxAY-minAY)/(npy-1);
|
---|
| 1338 | if DX==0
|
---|
| 1339 | DX=DXinit;
|
---|
| 1340 | end
|
---|
| 1341 | if DY==0
|
---|
| 1342 | DY=DYinit;
|
---|
| 1343 | end
|
---|
| 1344 | npX=floor((XMax-XMin)/DX+1);
|
---|
| 1345 | npY=floor((YMax-YMin)/DY+1);
|
---|
| 1346 | if test_direct_y
|
---|
| 1347 | coord_y_proj=linspace(YMin,YMax,npY);%abscissa of the new pixels along the line
|
---|
| 1348 | else
|
---|
| 1349 | coord_y_proj=linspace(YMax,YMin,npY);%abscissa of the new pixels along the line
|
---|
| 1350 | end
|
---|
| 1351 | if test_direct_x
|
---|
| 1352 | coord_x_proj=linspace(XMin,XMax,npX);%abscissa of the new pixels along the line
|
---|
| 1353 | else
|
---|
| 1354 | coord_x_proj=linspace(XMax,XMin,npX);%abscissa of the new pixels along the line
|
---|
| 1355 | end
|
---|
| 1356 |
|
---|
| 1357 | % case with no rotation and interpolation
|
---|
| 1358 | if isequal(ProjMode,'projection') && isequal(Phi,0) && isequal(Theta,0) && isequal(Psi,0)
|
---|
| 1359 | if test_direct(1)
|
---|
| 1360 | min_ind1=ceil((YMin-Coord{1}(1))/DYinit)+1;
|
---|
| 1361 | max_ind1=floor((YMax-Coord{1}(1))/DYinit)+1;
|
---|
| 1362 | Ybound(1)=Coord{1}(1)+DYinit*(min_ind1-1);
|
---|
| 1363 | Ybound(2)=Coord{1}(1)+DYinit*(max_ind1-1);
|
---|
| 1364 | else
|
---|
| 1365 | min_ind1=ceil((Coord{1}(1)-YMax)/DYinit)+1;
|
---|
| 1366 | max_ind1=floor((Coord{1}(1)-YMin)/DYinit)+1;
|
---|
| 1367 | Ybound(2)=Coord{1}(1)-DYinit*(max_ind1-1);
|
---|
| 1368 | Ybound(1)=Coord{1}(1)-DYinit*(min_ind1-1);
|
---|
| 1369 | end
|
---|
| 1370 | if test_direct(2)==1
|
---|
| 1371 | min_ind2=ceil((XMin-Coord{2}(1))/DXinit)+1;
|
---|
| 1372 | max_ind2=floor((XMax-Coord{2}(1))/DXinit)+1;
|
---|
| 1373 | Xbound(1)=Coord{2}(1)+DXinit*(min_ind2-1);
|
---|
| 1374 | Xbound(2)=Coord{2}(1)+DXinit*(max_ind2-1);
|
---|
| 1375 | else
|
---|
| 1376 | min_ind2=ceil((Coord{2}(1)-XMax)/DXinit)+1;
|
---|
| 1377 | max_ind2=floor((Coord{2}(1)-XMin)/DXinit)+1;
|
---|
| 1378 | Xbound(2)=Coord{2}(1)+DXinit*(max_ind2-1);
|
---|
| 1379 | Xbound(1)=Coord{2}(1)+DXinit*(min_ind2-1);
|
---|
| 1380 | end
|
---|
| 1381 | min_ind1=max(min_ind1,1);% deals with margin (bound lower than the first index)
|
---|
| 1382 | min_ind2=max(min_ind2,1);
|
---|
| 1383 | max_ind1=min(max_ind1,npy);
|
---|
| 1384 | max_ind2=min(max_ind2,npx);
|
---|
| 1385 | for ivar=VarIndex
|
---|
| 1386 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1387 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
| 1388 | ProjData.VarDimIndex=[ProjData.VarDimIndex [nb_dim-1 nb_dim]];
|
---|
| 1389 | if length(FieldData.VarAttribute)>=ivar
|
---|
| 1390 | ProjData.VarAttribute{length(ProjData.ListVarName)}=FieldData.VarAttribute{ivar};
|
---|
| 1391 | end
|
---|
| 1392 | eval(['ProjData.' VarName '=FieldData.' VarName '(min_ind1:max_ind1,min_ind2:max_ind2) ;']);
|
---|
| 1393 | end
|
---|
| 1394 | else
|
---|
| 1395 | % case with rotation and/or interpolation
|
---|
| 1396 | if isempty(Coord_z) %2D case
|
---|
| 1397 | [X,Y]=meshgrid(coord_x_proj,coord_y_proj);%grid in the new coordinates
|
---|
| 1398 | XIMA=ObjectData.Coord(1,1)+(X)*cos(Phi)-Y*sin(Phi);%corresponding coordinates in the original image
|
---|
| 1399 | YIMA=ObjectData.Coord(1,2)+(X)*sin(Phi)+Y*cos(Phi);
|
---|
| 1400 | XIMA=(XIMA-minAX)/DXinit+1;% image index along x
|
---|
| 1401 | YIMA=(-YIMA+maxAY)/DYinit+1;% image index along y
|
---|
| 1402 | XIMA=reshape(round(XIMA),1,npX*npY);%indices reorganized in 'line'
|
---|
| 1403 | YIMA=reshape(round(YIMA),1,npX*npY);
|
---|
| 1404 | flagin=XIMA>=1 & XIMA<=npx & YIMA >=1 & YIMA<=npy;%flagin=1 inside the original image
|
---|
| 1405 | if isequal(ObjectData.ProjMode,'filter')
|
---|
| 1406 | npx_filter=ceil(abs(DX/DAX));
|
---|
| 1407 | npy_filter=ceil(abs(DY/DAY));
|
---|
| 1408 | Mfilter=ones(npy_filter,npx_filter)/(npx_filter*npy_filter);
|
---|
| 1409 | test_filter=1;
|
---|
| 1410 | else
|
---|
| 1411 | test_filter=0;
|
---|
| 1412 | end
|
---|
| 1413 | for ivar=VarIndex
|
---|
| 1414 | VarName=FieldData.ListVarName{ivar} ;
|
---|
| 1415 | if test_interp(1) | test_interp(2)%interpolate on a regular grid
|
---|
| 1416 | eval(['FieldData.' VarName '=interp2(Coord{2},Coord{1},FieldData.' VarName ',Coord_x,Coord_y'');']) %TO TEST
|
---|
| 1417 | end
|
---|
| 1418 | %filter the field (image) if option 'filter' is used
|
---|
| 1419 | if test_filter
|
---|
| 1420 | Aclass=class(FieldData.A);
|
---|
| 1421 | eval(['FieldData.' VarName '=filter2(Mfilter,FieldData.' VarName ',''valid'');'])
|
---|
| 1422 | if ~isequal(Aclass,'double')
|
---|
| 1423 | eval(['FieldData.' VarName '=' Aclass '(FieldData.' VarName ');'])%revert to integer values
|
---|
| 1424 | end
|
---|
| 1425 | end
|
---|
| 1426 | eval(['vec_A=reshape(FieldData.' VarName ',npx*npy,nbcolor);'])%put the original image in line
|
---|
| 1427 | ind_in=find(flagin);
|
---|
| 1428 | ind_out=find(~flagin);
|
---|
| 1429 | ICOMB=(XIMA-1)*npy+YIMA;
|
---|
| 1430 | ICOMB=ICOMB(flagin);%index corresponding to XIMA and YIMA in the aligned original image vec_A
|
---|
| 1431 | vec_B(ind_in,[1:nbcolor])=vec_A(ICOMB,:);
|
---|
| 1432 | for icolor=1:nbcolor
|
---|
| 1433 | vec_B(ind_out,icolor)=zeros(size(ind_out));
|
---|
| 1434 | end
|
---|
| 1435 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
| 1436 | if length(FieldData.VarAttribute)>=ivar
|
---|
| 1437 | ProjData.VarAttribute{length(ProjData.ListVarName)+nbcoord}=FieldData.VarAttribute{ivar};
|
---|
[77] | 1438 | end
|
---|
| 1439 | eval(['ProjData.' VarName '=reshape(vec_B,npY,npX,nbcolor);']);
|
---|
| 1440 | end
|
---|
| 1441 | ProjData.FF=reshape(~flagin,npY,npX);%false flag A FAIRE: tenir compte d'un flga antérieur
|
---|
| 1442 | ProjData.ListVarName=[ProjData.ListVarName 'FF'];
|
---|
| 1443 | ProjData.VarAttribute{length(ProjData.ListVarName)}.Role='errorflag';
|
---|
| 1444 | else %3D case
|
---|
| 1445 | if isequal(Theta,0) & isequal(Phi,0)
|
---|
| 1446 | test_sup=(Coord{1}>=ObjectData.Coord(1,3));
|
---|
| 1447 | iz_sup=find(test_sup);
|
---|
| 1448 | iz=iz_sup(1);
|
---|
| 1449 | if iz>=1 & iz<=npz
|
---|
| 1450 | ProjData.ListDimName=[ProjData.ListDimName ListDimName(2:end)];
|
---|
| 1451 | ProjData.DimValue=[ProjData.DimValue npY npX];
|
---|
| 1452 | for ivar=VarIndex
|
---|
| 1453 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1454 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
| 1455 | ProjData.VarAttribute{length(ProjData.ListVarName)}=FieldData.VarAttribute{ivar}; %reproduce the variable attributes
|
---|
| 1456 | eval(['ProjData.' VarName '=squeeze(FieldData.' VarName '(iz,:,:));'])% select the z index iz
|
---|
| 1457 | %TODO : do a vertical average for a thick plane
|
---|
| 1458 | if test_interp(2) | test_interp(3)
|
---|
| 1459 | eval(['ProjData.' VarName '=interp2(Coord{3},Coord{2},ProjData.' VarName ',Coord_x,Coord_y'');'])
|
---|
| 1460 | end
|
---|
| 1461 | end
|
---|
[8] | 1462 | end
|
---|
[77] | 1463 | else
|
---|
| 1464 | errormsg='projection of structured coordinates on oblique plane not yet implemented';
|
---|
| 1465 | %TODO: use interp3
|
---|
| 1466 | return
|
---|
| 1467 | end
|
---|
| 1468 | end
|
---|
| 1469 | end
|
---|
| 1470 | end
|
---|
| 1471 | %projection of velocity components in the rotated coordinates
|
---|
| 1472 | if ~isequal(Phi,0) && length(ivar_U)==1
|
---|
| 1473 | if isempty(ivar_V)
|
---|
| 1474 | msgbox_uvmat('ERROR','v velocity component missing in proj_field.m')
|
---|
| 1475 | return
|
---|
| 1476 | end
|
---|
| 1477 | UName=FieldData.ListVarName{ivar_U};
|
---|
| 1478 | VName=FieldData.ListVarName{ivar_V};
|
---|
| 1479 | eval(['ProjData.' UName '=cos(Phi)*ProjData.' UName '+ sin(Phi)*ProjData.' VName ';'])
|
---|
| 1480 | eval(['ProjData.' VName '=cos(Theta)*(-sin(Phi)*ProjData.' UName '+ cos(Phi)*ProjData.' VName ');'])
|
---|
| 1481 | if ~isempty(ivar_W)
|
---|
| 1482 | WName=FieldData.ListVarName{ivar_W};
|
---|
| 1483 | eval(['ProjData.' VName '=ProjData.' VName '+ ProjData.' WName '*sin(Theta);'])%
|
---|
| 1484 | eval(['ProjData.' WName '=NormVec_X*ProjData.' UName '+ NormVec_Y*ProjData.' VName '+ NormVec_Z* ProjData.' WName ';']);
|
---|
| 1485 | end
|
---|
| 1486 | if ~isequal(Psi,0)
|
---|
| 1487 | eval(['ProjData.' UName '=cos(Psi)* ProjData.' UName '- sin(Psi)*ProjData.' VName ';']);
|
---|
| 1488 | eval(['ProjData.' VName '=sin(Psi)* ProjData.' UName '+ cos(Psi)*ProjData.' VName ';']);
|
---|
| 1489 | end
|
---|
| 1490 | end
|
---|
| 1491 | end
|
---|
| 1492 |
|
---|
| 1493 | %-----------------------------------------------------------------
|
---|
| 1494 | %project in a volume
|
---|
| 1495 | % A FAIRE ....(copie de proj_plane)
|
---|
| 1496 | function [ProjData,errormsg] = proj_volume(FieldData, ObjectData)
|
---|
| 1497 | %-----------------------------------------------------------------
|
---|
| 1498 |
|
---|
| 1499 | %initialisation of the input parameters of the projection plane
|
---|
| 1500 | %-----------------------------------------------------------------
|
---|
| 1501 | ProjMode='projection';%direct projection by default
|
---|
| 1502 | if isfield(ObjectData,'ProjMode'),ProjMode=ObjectData.ProjMode; end;
|
---|
| 1503 |
|
---|
| 1504 | %axis origin
|
---|
| 1505 | if isempty(ObjectData.Coord)
|
---|
| 1506 | ObjectData.Coord(1,1)=0;%origin of the volume set to [0 0] by default
|
---|
| 1507 | ObjectData.Coord(1,2)=0;
|
---|
| 1508 | ObjectData.Coord(1,3)=0;
|
---|
| 1509 | end
|
---|
| 1510 |
|
---|
| 1511 | %rotation angles
|
---|
| 1512 | Phi=0;%default
|
---|
| 1513 | Theta=0;
|
---|
| 1514 | Psi=0;
|
---|
| 1515 | if isfield(ObjectData,'Phi')&& ~isempty(ObjectData.Phi)
|
---|
| 1516 | Phi=(pi/180)*ObjectData.Phi;%first Euler angle in radian
|
---|
| 1517 | end
|
---|
| 1518 | if isfield(ObjectData,'Theta')&& ~isempty(ObjectData.Theta)
|
---|
| 1519 | Theta=(pi/180)*ObjectData.Theta;%second Euler angle in radian
|
---|
| 1520 | end
|
---|
| 1521 | if isfield(ObjectData,'Psi')&& ~isempty(ObjectData.Psi)
|
---|
| 1522 | Psi=(pi/180)*ObjectData.Psi;%third Euler angle in radian
|
---|
| 1523 | end
|
---|
| 1524 |
|
---|
| 1525 | %components of the unity vector normal to the projection plane
|
---|
| 1526 | NormVec_X=-sin(Phi)*sin(Theta);
|
---|
| 1527 | NormVec_Y=cos(Phi)*sin(Theta);
|
---|
| 1528 | NormVec_Z=cos(Theta);
|
---|
| 1529 |
|
---|
| 1530 | % test for 3D fields
|
---|
| 1531 | test3D=0;
|
---|
| 1532 | if isfield(FieldData,'nb_dim')
|
---|
| 1533 | test3D=isequal(FieldData.nb_dim,3);
|
---|
| 1534 | end
|
---|
| 1535 | test3C=test3D; %default 3 vel components
|
---|
| 1536 |
|
---|
| 1537 | %mesh sizes DX and DY
|
---|
| 1538 | DX=0;
|
---|
| 1539 | DY=0; %default
|
---|
| 1540 | if isfield(ObjectData,'DX')&~isempty(ObjectData.DX)
|
---|
| 1541 | DX=abs(ObjectData.DX);%mesh of interpolation points
|
---|
| 1542 | end
|
---|
| 1543 | if isfield(ObjectData,'DY')&~isempty(ObjectData.DY)
|
---|
| 1544 | DY=abs(ObjectData.DY);%mesh of interpolation points
|
---|
| 1545 | end
|
---|
| 1546 | if ~isequal(ProjMode,'projection') & (DX==0|DY==0)
|
---|
| 1547 | errormsg='DX or DY missing';
|
---|
| 1548 | display(errormsg)
|
---|
| 1549 | return
|
---|
| 1550 | end
|
---|
| 1551 | if isfield(ObjectData,'DZ')&~isempty(ObjectData.DZ)
|
---|
| 1552 | DZ=abs(ObjectData.DZ);%mesh of interpolation points
|
---|
| 1553 | end
|
---|
| 1554 |
|
---|
| 1555 | %extrema along each axis
|
---|
| 1556 | testXMin=0;
|
---|
| 1557 | testXMax=0;
|
---|
| 1558 | testYMin=0;
|
---|
| 1559 | testYMax=0;
|
---|
| 1560 | if isfield(ObjectData,'RangeX')
|
---|
| 1561 | XMin=min(ObjectData.RangeX);
|
---|
| 1562 | XMax=max(ObjectData.RangeX);
|
---|
| 1563 | testXMin=XMax>XMin;
|
---|
| 1564 | testXMax=1;
|
---|
| 1565 | end
|
---|
| 1566 | if isfield(ObjectData,'RangeY')
|
---|
| 1567 | YMin=min(ObjectData.RangeY);
|
---|
| 1568 | YMax=max(ObjectData.RangeY);
|
---|
| 1569 | testYMin=YMax>YMin;
|
---|
| 1570 | testYMax=1;
|
---|
| 1571 | end
|
---|
| 1572 | width=0;%default width of the projection band
|
---|
| 1573 | if isfield(ObjectData,'RangeZ')
|
---|
| 1574 | ZMin=min(ObjectData.RangeZ);
|
---|
| 1575 | ZMax=max(ObjectData.RangeZ);
|
---|
| 1576 | testZMin=YMax>YMin;
|
---|
| 1577 | testZMax=1;
|
---|
| 1578 | % width=max(ObjectData.RangeZ);
|
---|
| 1579 | end
|
---|
| 1580 |
|
---|
| 1581 | % initiate Matlab structure for physical field
|
---|
| 1582 | ProjData=proj_heading(FieldData,ObjectData);
|
---|
| 1583 | ProjData.NbDim=3;
|
---|
| 1584 | ProjData.ListDimName={};%name of dimension
|
---|
| 1585 | ProjData.DimValue=[];%values of dimension (nbre of vectors)
|
---|
| 1586 | ProjData.ListVarName={};
|
---|
| 1587 | ProjData.VarDimName={};
|
---|
| 1588 |
|
---|
| 1589 | error=0;%default
|
---|
| 1590 | flux=0;
|
---|
| 1591 | testfalse=0;
|
---|
| 1592 | ListIndex={};
|
---|
| 1593 |
|
---|
| 1594 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
---|
| 1595 | %group the variables (fields of 'FieldData') in cells of variables with the same dimensions
|
---|
| 1596 | %-----------------------------------------------------------------
|
---|
| 1597 | idimvar=0;
|
---|
| 1598 | [CellVarIndex,NbDim,VarTypeCell,errormsg]=find_field_indices(FieldData);
|
---|
| 1599 | if ~isempty(errormsg)
|
---|
| 1600 | errormsg=['error in proj_field/proj_plane:' errormsg];
|
---|
| 1601 | return
|
---|
| 1602 | end
|
---|
| 1603 | %LOOP ON GROUPS OF VARIABLES SHARING THE SAME DIMENSIONS
|
---|
| 1604 | % CellVarIndex=cells of variable index arrays
|
---|
| 1605 | ivar_new=0; % index of the current variable in the projected field
|
---|
| 1606 | icoord=0;
|
---|
| 1607 | nbcoord=0;%number of added coordinate variables brought by projection
|
---|
| 1608 | for icell=1:length(CellVarIndex)
|
---|
| 1609 | if NbDim(icell)<2
|
---|
| 1610 | continue
|
---|
| 1611 | end
|
---|
| 1612 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName
|
---|
| 1613 | VarType=VarTypeCell{icell};
|
---|
| 1614 | ivar_X=VarType.coord_x;
|
---|
| 1615 | ivar_Y=VarType.coord_y;
|
---|
| 1616 | ivar_Z=VarType.coord_z;
|
---|
| 1617 | ivar_U=VarType.vector_x;
|
---|
| 1618 | ivar_V=VarType.vector_y;
|
---|
| 1619 | ivar_W=VarType.vector_z;
|
---|
| 1620 | ivar_C=VarType.scalar ;
|
---|
| 1621 | ivar_Anc=VarType.ancillary;
|
---|
| 1622 | test_anc=zeros(size(VarIndex));
|
---|
| 1623 | test_anc(ivar_Anc)=ones(size(ivar_Anc));
|
---|
| 1624 | ivar_F=VarType.warnflag;
|
---|
| 1625 | ivar_FF=VarType.errorflag;
|
---|
| 1626 | testX=~isempty(ivar_X) && ~isempty(ivar_Y);
|
---|
| 1627 | DimCell=FieldData.VarDimName{VarIndex(1)};
|
---|
| 1628 | if ischar(DimCell)
|
---|
| 1629 | DimCell={DimCell};%name of dimensions
|
---|
| 1630 | end
|
---|
| 1631 |
|
---|
| 1632 | %case of input fields with unstructured coordinates
|
---|
| 1633 | if testX
|
---|
| 1634 | XName=FieldData.ListVarName{ivar_X};
|
---|
| 1635 | YName=FieldData.ListVarName{ivar_Y};
|
---|
| 1636 | eval(['coord_x=FieldData.' XName ';'])
|
---|
| 1637 | eval(['coord_y=FieldData.' YName ';'])
|
---|
| 1638 | if length(ivar_Z)==1
|
---|
| 1639 | ZName=FieldData.ListVarName{ivar_Z};
|
---|
| 1640 | eval(['coord_z=FieldData.' ZName ';'])
|
---|
| 1641 | end
|
---|
| 1642 |
|
---|
| 1643 | % translate initial coordinates
|
---|
| 1644 | coord_x=coord_x-ObjectData.Coord(1,1);
|
---|
| 1645 | coord_y=coord_y-ObjectData.Coord(1,2);
|
---|
| 1646 | if ~isempty(ivar_Z)
|
---|
| 1647 | coord_z=coord_z-ObjectData.Coord(1,3);
|
---|
| 1648 | end
|
---|
| 1649 |
|
---|
| 1650 | % selection of the vectors in the projection range (3D case)
|
---|
| 1651 | if length(ivar_Z)==1 && width > 0
|
---|
| 1652 | %components of the unitiy vector normal to the projection plane
|
---|
| 1653 | fieldZ=NormVec_X*coord_x + NormVec_Y*coord_y+ NormVec_Z*coord_z;% distance to the plane
|
---|
| 1654 | indcut=find(abs(fieldZ) <= width);
|
---|
| 1655 | for ivar=VarIndex
|
---|
| 1656 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1657 | eval(['FieldData.' VarName '=FieldData.' VarName '(indcut);'])
|
---|
| 1658 | % end
|
---|
| 1659 | % A VOIR : CAS DE VAR STRUCTUREE MAIS PAS GRILLE REGULIERE : INTERPOLER SUR GRILLE REGULIERE
|
---|
| 1660 | end
|
---|
| 1661 | coord_x=coord_x(indcut);
|
---|
| 1662 | coord_y=coord_y(indcut);
|
---|
| 1663 | coord_z=coord_z(indcut);
|
---|
| 1664 | end
|
---|
| 1665 |
|
---|
| 1666 | %rotate coordinates if needed
|
---|
| 1667 | if isequal(Phi,0)
|
---|
| 1668 | coord_X=coord_x;
|
---|
| 1669 | coord_Y=coord_y;
|
---|
| 1670 | if ~isequal(Theta,0)
|
---|
| 1671 | coord_Y=coord_Y *cos(Theta);
|
---|
| 1672 | end
|
---|
| 1673 | else
|
---|
| 1674 | coord_X=(coord_x *cos(Phi) + coord_y* sin(Phi));
|
---|
| 1675 | coord_Y=(-coord_x *sin(Phi) + coord_y *cos(Phi))*cos(Theta);
|
---|
| 1676 | end
|
---|
| 1677 | if ~isempty(ivar_Z)
|
---|
| 1678 | coord_Y=coord_Y+coord_z *sin(Theta);
|
---|
| 1679 | end
|
---|
| 1680 | if ~isequal(Psi,0)
|
---|
| 1681 | coord_X=(coord_X *cos(Psi) - coord_Y* sin(Psi));%A VERIFIER
|
---|
| 1682 | coord_Y=(coord_X *sin(Psi) + coord_Y* cos(Psi));
|
---|
| 1683 | end
|
---|
| 1684 | coord_Z=coord_z; %TO UPDATE
|
---|
| 1685 | %restriction to the range of x and y if imposed
|
---|
| 1686 | testin=ones(size(coord_X)); %default
|
---|
| 1687 | testbound=0;
|
---|
| 1688 | if testXMin
|
---|
| 1689 | testin=testin & (coord_X >= XMin);
|
---|
| 1690 | testbound=1;
|
---|
| 1691 | end
|
---|
| 1692 | if testXMax
|
---|
| 1693 | testin=testin & (coord_X <= XMax);
|
---|
| 1694 | testbound=1;
|
---|
| 1695 | end
|
---|
| 1696 | if testYMin
|
---|
| 1697 | testin=testin & (coord_Y >= YMin);
|
---|
| 1698 | testbound=1;
|
---|
| 1699 | end
|
---|
| 1700 | if testYMin
|
---|
| 1701 | testin=testin & (coord_Y <= YMax);
|
---|
| 1702 | testbound=1;
|
---|
| 1703 | end
|
---|
| 1704 | if testbound
|
---|
| 1705 | indcut=find(testin);
|
---|
| 1706 | for ivar=VarIndex
|
---|
| 1707 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1708 | eval(['FieldData.' VarName '=FieldData.' VarName '(indcut);'])
|
---|
| 1709 | end
|
---|
| 1710 | coord_X=coord_X(indcut);
|
---|
| 1711 | coord_Y=coord_Y(indcut);
|
---|
| 1712 | if length(ivar_Z)==1
|
---|
| 1713 | coord_Z=coord_Z(indcut);
|
---|
| 1714 | end
|
---|
| 1715 | end
|
---|
| 1716 | % different cases of projection
|
---|
| 1717 | if isequal(ObjectData.ProjMode,'projection')
|
---|
| 1718 | %the list of dimension
|
---|
| 1719 | ProjData.ListDimName=[ProjData.ListDimName FieldData.VarDimName(VarIndex(1))];%add the point index to the list of dimensions
|
---|
| 1720 | ProjData.DimValue=[ProjData.DimValue length(coord_X)];
|
---|
| 1721 | nbvar=0;
|
---|
| 1722 | for ivar=VarIndex %transfer variables to the projection plane
|
---|
| 1723 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1724 | if ivar==ivar_X %x coordinate
|
---|
| 1725 | eval(['ProjData.' VarName '=coord_X;'])
|
---|
| 1726 | elseif ivar==ivar_Y % y coordinate
|
---|
| 1727 | eval(['ProjData.' VarName '=coord_Y;'])
|
---|
| 1728 | elseif isempty(ivar_Z) || ivar~=ivar_Z % other variables (except Z coordinate wyhich is not reproduced)
|
---|
| 1729 | eval(['ProjData.' VarName '=FieldData.' VarName ';'])
|
---|
| 1730 | end
|
---|
| 1731 | if isempty(ivar_Z) || ivar~=ivar_Z
|
---|
| 1732 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
| 1733 | ProjData.VarDimName=[ProjData.VarDimName DimCell];
|
---|
| 1734 | nbvar=nbvar+1;
|
---|
| 1735 | if isfield(FieldData,'VarAttribute') & length(FieldData.VarAttribute) >=ivar
|
---|
| 1736 | ProjData.VarAttribute{nbvar}=FieldData.VarAttribute{ivar};
|
---|
| 1737 | end
|
---|
| 1738 | end
|
---|
| 1739 | end
|
---|
| 1740 | elseif isequal(ObjectData.ProjMode,'interp')||isequal(ObjectData.ProjMode,'filter')%interpolate data on a regular grid
|
---|
| 1741 | coord_x_proj=[XMin:DX:XMax];
|
---|
| 1742 | coord_y_proj=[YMin:DY:YMax];
|
---|
| 1743 | coord_z_proj=[ZMin:DZ:ZMax];
|
---|
| 1744 | [XI,YI,ZI]=meshgrid(coord_x_proj,coord_y_proj,coord_z_proj);
|
---|
| 1745 | DimCell={'coord_y','coord_x'};
|
---|
| 1746 | ProjData.ListVarName={'coord_z','coord_y','coord_x'};
|
---|
| 1747 | ProjData.VarDimName={'coord_z','coord_y','coord_x'};
|
---|
| 1748 | nbcoord=3;
|
---|
| 1749 | ProjData.coord_z=[ZMin ZMax];
|
---|
| 1750 | ProjData.coord_y=[YMin YMax];
|
---|
| 1751 | ProjData.coord_x=[XMin XMax];
|
---|
| 1752 | if isempty(ivar_X), ivar_X=0; end;
|
---|
| 1753 | if isempty(ivar_Y), ivar_Y=0; end;
|
---|
| 1754 | if isempty(ivar_Z), ivar_Z=0; end;
|
---|
| 1755 | if isempty(ivar_U), ivar_U=0; end;
|
---|
| 1756 | if isempty(ivar_V), ivar_V=0; end;
|
---|
| 1757 | if isempty(ivar_W), ivar_W=0; end;
|
---|
| 1758 | if isempty(ivar_F), ivar_F=0; end;
|
---|
| 1759 | if isempty(ivar_FF), ivar_FF=0; end;
|
---|
| 1760 | if ~isequal(ivar_FF,0)
|
---|
| 1761 | VarName_FF=FieldData.ListVarName{ivar_FF};
|
---|
| 1762 | eval(['indsel=find(FieldData.' VarName_FF '==0);'])
|
---|
| 1763 | coord_X=coord_X(indsel);
|
---|
| 1764 | coord_Y=coord_Y(indsel);
|
---|
| 1765 | end
|
---|
| 1766 | FF=zeros(1,length(coord_y_proj)*length(coord_x_proj));
|
---|
| 1767 | testFF=0;
|
---|
| 1768 | size(XI)
|
---|
| 1769 | size(YI)
|
---|
| 1770 | size(ZI)
|
---|
| 1771 | for ivar=VarIndex
|
---|
| 1772 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1773 | if ~( ivar==ivar_X || ivar==ivar_Y || ivar==ivar_Z || ivar==ivar_F || ivar==ivar_FF || test_anc(ivar)==1)
|
---|
| 1774 | ivar_new=ivar_new+1;
|
---|
| 1775 | ProjData.ListVarName=[ProjData.ListVarName {VarName}];
|
---|
| 1776 | ProjData.VarDimName=[ProjData.VarDimName {DimCell}];
|
---|
| 1777 | if isfield(FieldData,'VarAttribute') && length(FieldData.VarAttribute) >=ivar
|
---|
| 1778 | ProjData.VarAttribute{ivar_new+nbcoord}=FieldData.VarAttribute{ivar};
|
---|
| 1779 | end
|
---|
| 1780 | if ~isequal(ivar_FF,0)
|
---|
| 1781 | eval(['FieldData.' VarName '=FieldData.' VarName '(indsel);'])
|
---|
| 1782 | end
|
---|
| 1783 | eval(['ProjData.' VarName '=griddata3(double(coord_X),double(coord_Y),double(coord_Z),double(FieldData.' VarName '),XI,YI,ZI);'])
|
---|
| 1784 | % eval(['varline=reshape(ProjData.' VarName ',1,length(coord_y_proj)*length(coord_x_proj));'])
|
---|
| 1785 | % FFlag= isnan(varline); %detect undefined values NaN
|
---|
| 1786 | % indnan=find(FFlag);
|
---|
| 1787 | % if~isempty(indnan)
|
---|
| 1788 | % varline(indnan)=zeros(size(indnan));
|
---|
| 1789 | % eval(['ProjData.' VarName '=reshape(varline,length(coord_y_proj),length(coord_x_proj));'])
|
---|
| 1790 | % FF(indnan)=ones(size(indnan));
|
---|
| 1791 | % testFF=1;
|
---|
[8] | 1792 | % end
|
---|
[77] | 1793 | % if ivar==ivar_U
|
---|
| 1794 | % ivar_U=ivar_new;
|
---|
| 1795 | % end
|
---|
| 1796 | % if ivar==ivar_V
|
---|
| 1797 | % ivar_V=ivar_new;
|
---|
| 1798 | % end
|
---|
| 1799 | % if ivar==ivar_W
|
---|
| 1800 | % ivar_W=ivar_new;
|
---|
| 1801 | % end
|
---|
| 1802 | end
|
---|
| 1803 | end
|
---|
| 1804 | if testFF
|
---|
| 1805 | ProjData.FF=reshape(FF,length(coord_y_proj),length(coord_x_proj));
|
---|
| 1806 | ProjData.ListVarName=[ProjData.ListVarName {'FF'}];
|
---|
| 1807 | ProjData.VarDimName=[ProjData.VarDimName {DimCell}];
|
---|
| 1808 | ProjData.VarAttribute{ivar_new+1+nbcoord}.Role='errorflag';
|
---|
| 1809 | end
|
---|
| 1810 | end
|
---|
| 1811 | %case of fields defined on a structured grid
|
---|
| 1812 | else
|
---|
| 1813 | AYName=FieldData.ListVarName{VarType.coord(1)};
|
---|
| 1814 | AXName=FieldData.ListVarName{VarType.coord(2)};
|
---|
| 1815 | eval(['AX=FieldData.' AXName ';'])
|
---|
| 1816 | eval(['AY=FieldData.' AYName ';'])
|
---|
| 1817 | VarName=FieldData.ListVarName{VarIndex(1)};
|
---|
| 1818 | eval(['DimValue=size(FieldData.' VarName ');'])
|
---|
| 1819 | ListDimName=FieldData.VarDimName{VarIndex(1)};
|
---|
| 1820 | ProjData.ListVarName=[{AYName} {AXName} ProjData.ListVarName]; %TODO: check if it already exists in Projdata (several cells)
|
---|
| 1821 | ProjData.VarDimName=[{AYName} {AXName} ProjData.VarDimName];
|
---|
| 1822 | nbcolor=1; %default
|
---|
| 1823 | for idim=1:length(ListDimName)
|
---|
| 1824 | DimName=ListDimName{idim};
|
---|
| 1825 | if isequal(DimName,'rgb')|isequal(DimName,'nb_coord')|isequal(DimName,'nb_coord_i')
|
---|
| 1826 | nbcolor=DimValue(idim);
|
---|
| 1827 | DimIndices(idim)=[];
|
---|
| 1828 | DimValue(idim)=[];
|
---|
| 1829 | end
|
---|
| 1830 | if isequal(DimName,'nb_coord_j')% NOTE: CASE OF TENSOR NOT TREATED
|
---|
| 1831 | DimIndices(idim)=[];
|
---|
| 1832 | DimValue(idim)=[];
|
---|
| 1833 | end
|
---|
| 1834 | end
|
---|
| 1835 | ind_1=find(DimValue==1);
|
---|
| 1836 | DimIndices(ind_1)=[]; %suppress singleton dimensions
|
---|
| 1837 | % indxy=find(DimVarIndex(DimIndices));%select dimension variables (DimIndices non zero)
|
---|
| 1838 | nb_dim=length(DimIndices);%number of space dimensions
|
---|
| 1839 | Coord_z=[];
|
---|
| 1840 | Coord_y=[];
|
---|
| 1841 | Coord_x=[];
|
---|
| 1842 |
|
---|
| 1843 | for idim=1:nb_dim %loop on space dimensions
|
---|
| 1844 | test_interp(idim)=0;%test for coordiate interpolation (non regular grid), =0 by default
|
---|
| 1845 | test_coord(idim)=0;%test for defined coordinates, =0 by default
|
---|
| 1846 | ivar=DimVarIndex(DimIndices(idim));% index of the variable corresponding to the current dimension
|
---|
| 1847 | if ~isequal(ivar,0)% a variable corresponds to the current dimension
|
---|
| 1848 | eval(['Coord{idim}=FieldData.' FieldData.ListVarName{ivar} ';']) ;% position for the first index
|
---|
| 1849 | DCoord=diff(Coord{idim});
|
---|
| 1850 | DCoord_min(idim)=min(DCoord);
|
---|
| 1851 | DCoord_max=max(DCoord);
|
---|
| 1852 | test_direct(idim)=DCoord_max>0;% =1 for increasing values, 0 otherwise
|
---|
| 1853 | test_direct_min=DCoord_min(idim)>0;% =1 for increasing values, 0 otherwise
|
---|
| 1854 | if ~isequal(test_direct(idim),test_direct_min)
|
---|
| 1855 | msgbox_uvmat('ERROR',['non monotonic dimension variable # ' num2str(idim) ' in proj_field.m'])
|
---|
| 1856 | return
|
---|
| 1857 | end
|
---|
| 1858 | test_interp(idim)=(DCoord_max-DCoord_min(idim))> 0.0001*abs(DCoord_max);% test grid regularity
|
---|
| 1859 | test_coord(idim)=1;
|
---|
| 1860 |
|
---|
| 1861 | else % no variable associated with the first dimension, look for variable attributes Coord_1, _2 or _3
|
---|
| 1862 | Coord_i_str=['Coord_' num2str(idim)];
|
---|
| 1863 | DCoord_min(idim)=1;%default
|
---|
| 1864 | Coord{idim}=[0.5 DimValue(idim)-0.5];
|
---|
| 1865 | test_direct(idim)=1;
|
---|
| 1866 | end
|
---|
| 1867 | end
|
---|
| 1868 | if nb_dim==2
|
---|
| 1869 | if DY==0
|
---|
| 1870 | DY=abs(DCoord_min(1));
|
---|
| 1871 | end
|
---|
| 1872 | npY=1+round(abs(Coord{1}(end)-Coord{1}(1))/DY);%nbre of points after interpolation
|
---|
| 1873 | npy=1+round(abs(Coord{1}(end)-Coord{1}(1))/abs(DCoord_min(1)));%nbre of points after possible interpolation on a regular grid
|
---|
| 1874 | if DX==0
|
---|
| 1875 | DX=abs(DCoord_min(2));
|
---|
| 1876 | end
|
---|
| 1877 | npX=1+round(abs(Coord{2}(end)-Coord{2}(1))/DX);%nbre of points after interpol
|
---|
| 1878 | npx=1+round(abs(Coord{2}(end)-Coord{2}(1))/abs(DCoord_min(2)));%nbre of points after possible interpolation on a regular grid
|
---|
| 1879 | Coord_y=linspace(Coord{1}(1),Coord{1}(end),npY);
|
---|
| 1880 | test_direct_y=test_direct(1);
|
---|
| 1881 | Coord_x=linspace(Coord{2}(1),Coord{2}(end),npX);
|
---|
| 1882 | test_direct_x=test_direct(2);
|
---|
| 1883 | DAX=DCoord_min(2);
|
---|
| 1884 | DAY=DCoord_min(1);
|
---|
| 1885 | elseif nb_dim==3
|
---|
| 1886 | DZ=abs(DCoord_min(1));
|
---|
| 1887 | npz=1+round(abs(Coord{1}(end)-Coord{1}(1))/DZ);%nbre of points after interpolation
|
---|
| 1888 | if DY==0
|
---|
| 1889 | DY=abs(DCoord_min(2));
|
---|
| 1890 | end
|
---|
| 1891 | npY=1+round(abs(Coord{2}(end)-Coord{2}(1))/DY);%nbre of points after interpol
|
---|
| 1892 | npy=1+round(abs(Coord{2}(end)-Coord{2}(1))/abs(DCoord_min(2)));%nbre of points before interpol
|
---|
| 1893 | if DX==0
|
---|
| 1894 | DX=abs(DCoord_min(3));
|
---|
| 1895 | end
|
---|
| 1896 | npX=1+round(abs(Coord{3}(end)-Coord{3}(1))/DX);%nbre of points after interpol
|
---|
| 1897 | npx=1+round(abs(Coord{3}(end)-Coord{3}(1))/abs(DCoord_min(3)));%nbre of points before interpol
|
---|
| 1898 | Coord_z=linspace(Coord{1}(1),Coord{1}(end),npz);
|
---|
| 1899 | test_direct_z=test_direct(1);
|
---|
| 1900 | Coord_y=linspace(Coord{2}(1),Coord{2}(end),npY);
|
---|
| 1901 | test_direct_y=test_direct(2);
|
---|
| 1902 | Coord_x=linspace(Coord{3}(1),Coord{3}(end),npX);
|
---|
| 1903 | test_direct_x=test_direct(3);
|
---|
| 1904 | end
|
---|
| 1905 | minAX=min(Coord_x);
|
---|
| 1906 | maxAX=max(Coord_x);
|
---|
| 1907 | minAY=min(Coord_y);
|
---|
| 1908 | maxAY=max(Coord_y);
|
---|
| 1909 | xcorner=[minAX maxAX minAX maxAX]-ObjectData.Coord(1,1);
|
---|
| 1910 | ycorner=[maxAY maxAY minAY minAY]-ObjectData.Coord(1,2);
|
---|
| 1911 | xcor_new=xcorner*cos(Phi)+ycorner*sin(Phi);%coord new frame
|
---|
| 1912 | ycor_new=-xcorner*sin(Phi)+ycorner*cos(Phi);
|
---|
| 1913 | if ~testXMax
|
---|
| 1914 | XMax=max(xcor_new);
|
---|
| 1915 | end
|
---|
| 1916 | if ~testXMin
|
---|
| 1917 | XMin=min(xcor_new);
|
---|
| 1918 | end
|
---|
| 1919 | if ~testYMax
|
---|
| 1920 | YMax=max(ycor_new);
|
---|
| 1921 | end
|
---|
| 1922 | if ~testYMin
|
---|
| 1923 | YMin=min(ycor_new);
|
---|
| 1924 | end
|
---|
| 1925 | DXinit=(maxAX-minAX)/(npx-1);
|
---|
| 1926 | DYinit=(maxAY-minAY)/(npy-1);
|
---|
| 1927 | if DX==0
|
---|
| 1928 | DX=DXinit;
|
---|
| 1929 | end
|
---|
| 1930 | if DY==0
|
---|
| 1931 | DY=DYinit;
|
---|
| 1932 | end
|
---|
| 1933 | npX=floor((XMax-XMin)/DX+1);
|
---|
| 1934 | npY=floor((YMax-YMin)/DY+1);
|
---|
| 1935 | if test_direct_y
|
---|
| 1936 | coord_y_proj=linspace(YMin,YMax,npY);%abscissa of the new pixels along the line
|
---|
| 1937 | else
|
---|
| 1938 | coord_y_proj=linspace(YMax,YMin,npY);%abscissa of the new pixels along the line
|
---|
| 1939 | end
|
---|
| 1940 | if test_direct_x
|
---|
| 1941 | coord_x_proj=linspace(XMin,XMax,npX);%abscissa of the new pixels along the line
|
---|
| 1942 | else
|
---|
| 1943 | coord_x_proj=linspace(XMax,XMin,npX);%abscissa of the new pixels along the line
|
---|
| 1944 | end
|
---|
| 1945 |
|
---|
| 1946 | % case with no rotation and interpolation
|
---|
| 1947 | if isequal(ProjMode,'projection') && isequal(Phi,0) && isequal(Theta,0) && isequal(Psi,0)
|
---|
| 1948 | if test_direct(1)
|
---|
| 1949 | min_ind1=ceil((YMin-Coord{1}(1))/DYinit)+1;
|
---|
| 1950 | max_ind1=floor((YMax-Coord{1}(1))/DYinit)+1;
|
---|
| 1951 | Ybound(1)=Coord{1}(1)+DYinit*(min_ind1-1);
|
---|
| 1952 | Ybound(2)=Coord{1}(1)+DYinit*(max_ind1-1);
|
---|
| 1953 | else
|
---|
| 1954 | min_ind1=ceil((Coord{1}(1)-YMax)/DYinit)+1;
|
---|
| 1955 | max_ind1=floor((Coord{1}(1)-YMin)/DYinit)+1;
|
---|
| 1956 | Ybound(2)=Coord{1}(1)-DYinit*(max_ind1-1);
|
---|
| 1957 | Ybound(1)=Coord{1}(1)-DYinit*(min_ind1-1);
|
---|
| 1958 | end
|
---|
| 1959 | if test_direct(2)==1
|
---|
| 1960 | min_ind2=ceil((XMin-Coord{2}(1))/DXinit)+1;
|
---|
| 1961 | max_ind2=floor((XMax-Coord{2}(1))/DXinit)+1;
|
---|
| 1962 | Xbound(1)=Coord{2}(1)+DXinit*(min_ind2-1);
|
---|
| 1963 | Xbound(2)=Coord{2}(1)+DXinit*(max_ind2-1);
|
---|
| 1964 | else
|
---|
| 1965 | min_ind2=ceil((Coord{2}(1)-XMax)/DXinit)+1;
|
---|
| 1966 | max_ind2=floor((Coord{2}(1)-XMin)/DXinit)+1;
|
---|
| 1967 | Xbound(2)=Coord{2}(1)+DXinit*(max_ind2-1);
|
---|
| 1968 | Xbound(1)=Coord{2}(1)+DXinit*(min_ind2-1);
|
---|
| 1969 | end
|
---|
| 1970 | min_ind1=max(min_ind1,1);% deals with margin (bound lower than the first index)
|
---|
| 1971 | min_ind2=max(min_ind2,1);
|
---|
| 1972 | max_ind1=min(max_ind1,npy);
|
---|
| 1973 | max_ind2=min(max_ind2,npx);
|
---|
| 1974 | for ivar=VarIndex
|
---|
| 1975 | VarName=FieldData.ListVarName{ivar};
|
---|
| 1976 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
| 1977 | ProjData.VarDimIndex=[ProjData.VarDimIndex [nb_dim-1 nb_dim]];
|
---|
| 1978 | if length(FieldData.VarAttribute)>=ivar
|
---|
| 1979 | ProjData.VarAttribute{length(ProjData.ListVarName)}=FieldData.VarAttribute{ivar};
|
---|
| 1980 | end
|
---|
| 1981 | eval(['ProjData.' VarName '=FieldData.' VarName '(min_ind1:max_ind1,min_ind2:max_ind2) ;']);
|
---|
| 1982 | end
|
---|
| 1983 | else
|
---|
| 1984 | % case with rotation and/or interpolation
|
---|
| 1985 | if isempty(Coord_z) %2D case
|
---|
| 1986 | [X,Y]=meshgrid(coord_x_proj,coord_y_proj);%grid in the new coordinates
|
---|
| 1987 | XIMA=ObjectData.Coord(1,1)+(X)*cos(Phi)-Y*sin(Phi);%corresponding coordinates in the original image
|
---|
| 1988 | YIMA=ObjectData.Coord(1,2)+(X)*sin(Phi)+Y*cos(Phi);
|
---|
| 1989 | XIMA=(XIMA-minAX)/DXinit+1;% image index along x
|
---|
| 1990 | YIMA=(-YIMA+maxAY)/DYinit+1;% image index along y
|
---|
| 1991 | XIMA=reshape(round(XIMA),1,npX*npY);%indices reorganized in 'line'
|
---|
| 1992 | YIMA=reshape(round(YIMA),1,npX*npY);
|
---|
| 1993 | flagin=XIMA>=1 & XIMA<=npx & YIMA >=1 & YIMA<=npy;%flagin=1 inside the original image
|
---|
| 1994 | if isequal(ObjectData.ProjMode,'filter')
|
---|
| 1995 | npx_filter=ceil(abs(DX/DAX));
|
---|
| 1996 | npy_filter=ceil(abs(DY/DAY));
|
---|
| 1997 | Mfilter=ones(npy_filter,npx_filter)/(npx_filter*npy_filter);
|
---|
| 1998 | test_filter=1;
|
---|
| 1999 | else
|
---|
| 2000 | test_filter=0;
|
---|
| 2001 | end
|
---|
| 2002 | for ivar=VarIndex
|
---|
| 2003 | VarName=FieldData.ListVarName{ivar} ;
|
---|
| 2004 | if test_interp(1) | test_interp(2)%interpolate on a regular grid
|
---|
| 2005 | eval(['FieldData.' VarName '=interp2(Coord{2},Coord{1},FieldData.' VarName ',Coord_x,Coord_y'');']) %TO TEST
|
---|
| 2006 | end
|
---|
| 2007 | %filter the field (image) if option 'filter' is used
|
---|
| 2008 | if test_filter
|
---|
| 2009 | Aclass=class(FieldData.A);
|
---|
| 2010 | eval(['FieldData.' VarName '=filter2(Mfilter,FieldData.' VarName ',''valid'');'])
|
---|
| 2011 | if ~isequal(Aclass,'double')
|
---|
| 2012 | eval(['FieldData.' VarName '=' Aclass '(FieldData.' VarName ');'])%revert to integer values
|
---|
| 2013 | end
|
---|
| 2014 | end
|
---|
| 2015 | eval(['vec_A=reshape(FieldData.' VarName ',npx*npy,nbcolor);'])%put the original image in line
|
---|
| 2016 | ind_in=find(flagin);
|
---|
| 2017 | ind_out=find(~flagin);
|
---|
| 2018 | ICOMB=(XIMA-1)*npy+YIMA;
|
---|
| 2019 | ICOMB=ICOMB(flagin);%index corresponding to XIMA and YIMA in the aligned original image vec_A
|
---|
| 2020 | vec_B(ind_in,[1:nbcolor])=vec_A(ICOMB,:);
|
---|
| 2021 | for icolor=1:nbcolor
|
---|
| 2022 | vec_B(ind_out,icolor)=zeros(size(ind_out));
|
---|
| 2023 | end
|
---|
| 2024 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
| 2025 | if length(FieldData.VarAttribute)>=ivar
|
---|
| 2026 | ProjData.VarAttribute{length(ProjData.ListVarName)+nbcoord}=FieldData.VarAttribute{ivar};
|
---|
| 2027 | end
|
---|
[8] | 2028 | eval(['ProjData.' VarName '=reshape(vec_B,npY,npX,nbcolor);']);
|
---|
| 2029 | end
|
---|
| 2030 | ProjData.FF=reshape(~flagin,npY,npX);%false flag A FAIRE: tenir compte d'un flga antérieur
|
---|
| 2031 | ProjData.ListVarName=[ProjData.ListVarName 'FF'];
|
---|
| 2032 | ProjData.VarAttribute{length(ProjData.ListVarName)}.Role='errorflag';
|
---|
| 2033 | else %3D case
|
---|
| 2034 | if isequal(Theta,0) & isequal(Phi,0)
|
---|
| 2035 | test_sup=(Coord{1}>=ObjectData.Coord(1,3));
|
---|
| 2036 | iz_sup=find(test_sup);
|
---|
| 2037 | iz=iz_sup(1);
|
---|
| 2038 | if iz>=1 & iz<=npz
|
---|
| 2039 | ProjData.ListDimName=[ProjData.ListDimName ListDimName(2:end)];
|
---|
| 2040 | ProjData.DimValue=[ProjData.DimValue npY npX];
|
---|
| 2041 | for ivar=VarIndex
|
---|
| 2042 | VarName=FieldData.ListVarName{ivar};
|
---|
| 2043 | ProjData.ListVarName=[ProjData.ListVarName VarName];
|
---|
[77] | 2044 | ProjData.VarAttribute{length(ProjData.ListVarName)}=FieldData.VarAttribute{ivar}; %reproduce the variable attributes
|
---|
[8] | 2045 | eval(['ProjData.' VarName '=squeeze(FieldData.' VarName '(iz,:,:));'])% select the z index iz
|
---|
| 2046 | %TODO : do a vertical average for a thick plane
|
---|
| 2047 | if test_interp(2) | test_interp(3)
|
---|
| 2048 | eval(['ProjData.' VarName '=interp2(Coord{3},Coord{2},ProjData.' VarName ',Coord_x,Coord_y'');'])
|
---|
| 2049 | end
|
---|
| 2050 | end
|
---|
| 2051 | end
|
---|
| 2052 | else
|
---|
| 2053 | errormsg='projection of structured coordinates on oblique plane not yet implemented';
|
---|
| 2054 | %TODO: use interp3
|
---|
| 2055 | return
|
---|
| 2056 | end
|
---|
| 2057 | end
|
---|
| 2058 | end
|
---|
| 2059 | end
|
---|
| 2060 | %projection of velocity components in the rotated coordinates
|
---|
[46] | 2061 | if ~isequal(Phi,0) && length(ivar_U)==1
|
---|
[8] | 2062 | if isempty(ivar_V)
|
---|
[38] | 2063 | msgbox_uvmat('ERROR','v velocity component missing in proj_field.m')
|
---|
[8] | 2064 | return
|
---|
| 2065 | end
|
---|
| 2066 | UName=FieldData.ListVarName{ivar_U};
|
---|
| 2067 | VName=FieldData.ListVarName{ivar_V};
|
---|
| 2068 | eval(['ProjData.' UName '=cos(Phi)*ProjData.' UName '+ sin(Phi)*ProjData.' VName ';'])
|
---|
| 2069 | eval(['ProjData.' VName '=cos(Theta)*(-sin(Phi)*ProjData.' UName '+ cos(Phi)*ProjData.' VName ');'])
|
---|
| 2070 | if ~isempty(ivar_W)
|
---|
| 2071 | WName=FieldData.ListVarName{ivar_W};
|
---|
| 2072 | eval(['ProjData.' VName '=ProjData.' VName '+ ProjData.' WName '*sin(Theta);'])%
|
---|
| 2073 | eval(['ProjData.' WName '=NormVec_X*ProjData.' UName '+ NormVec_Y*ProjData.' VName '+ NormVec_Z* ProjData.' WName ';']);
|
---|
| 2074 | end
|
---|
| 2075 | if ~isequal(Psi,0)
|
---|
| 2076 | eval(['ProjData.' UName '=cos(Psi)* ProjData.' UName '- sin(Psi)*ProjData.' VName ';']);
|
---|
| 2077 | eval(['ProjData.' VName '=sin(Psi)* ProjData.' UName '+ cos(Psi)*ProjData.' VName ';']);
|
---|
| 2078 | end
|
---|
| 2079 | end
|
---|
| 2080 | end
|
---|
| 2081 |
|
---|
| 2082 | %-----------------------------------------------------------------
|
---|
| 2083 | %transmit the global attributes
|
---|
| 2084 | function [ProjData,errormsg]=proj_heading(FieldData,ObjectData)
|
---|
| 2085 | %-----------------------------------------------------------------
|
---|
| 2086 | % ProjData=FieldData;
|
---|
| 2087 | ProjData=[];%default
|
---|
| 2088 | if ~isfield(FieldData,'ListGlobalAttribute')
|
---|
| 2089 | ProjData.ListGlobalAttribute={};
|
---|
| 2090 | else
|
---|
| 2091 | ProjData.ListGlobalAttribute=FieldData.ListGlobalAttribute;
|
---|
| 2092 | end
|
---|
| 2093 | if isfield(FieldData,'Txt')
|
---|
| 2094 | errormsg=FieldData.Txt; %transmit erreur message
|
---|
| 2095 | return;
|
---|
| 2096 | end
|
---|
| 2097 | for iattr=1:length(ProjData.ListGlobalAttribute)
|
---|
| 2098 | AttrName=ProjData.ListGlobalAttribute{iattr};
|
---|
| 2099 | if isfield(FieldData,AttrName)
|
---|
| 2100 | eval(['ProjData.' AttrName '=FieldData.' AttrName ';']);
|
---|
| 2101 | end
|
---|
| 2102 | end
|
---|
| 2103 | if isfield(FieldData,'CoordType')
|
---|
| 2104 | if isfield(ObjectData,'CoordType')&~isequal(FieldData.CoordType,ObjectData.CoordType)
|
---|
| 2105 | errormsg=[ObjectData.Style ' in ' ObjectData.CoordType ' coordinates, while field in ' FieldData.CoordType ' coordinates'];
|
---|
| 2106 | return
|
---|
| 2107 | else
|
---|
| 2108 | ProjData.CoordType=FieldData.CoordType;
|
---|
| 2109 | end
|
---|
| 2110 | end
|
---|
| 2111 |
|
---|
| 2112 | ListObject={'Style','ProjMode','RangeX','RangeY','RangeZ','Phi','Theta','Psi','Coord'};
|
---|
| 2113 | for ilist=1:length(ListObject)
|
---|
| 2114 | if isfield(ObjectData,ListObject{ilist})
|
---|
| 2115 | eval(['val=ObjectData.' ListObject{ilist} ';'])
|
---|
| 2116 | if ~isempty(val)
|
---|
| 2117 | eval(['ProjData.Object' ListObject{ilist} '=val;']);
|
---|
| 2118 | ProjData.ListGlobalAttribute=[ProjData.ListGlobalAttribute {['Object' ListObject{ilist}]}];
|
---|
| 2119 | end
|
---|
| 2120 | end
|
---|
| 2121 | end
|
---|