1 | %'read_xls': function for reading and displaying Excel files
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2 | %------------------------------------------------------------------------
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3 | % function [hfig_xls]=read_xls(fileinput,hfig)
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4 | %
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5 | % OUTPUT:
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6 | % hfig_xls: figure handle for display
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7 | %
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8 | % INPUT:
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9 | % fileinput: name of the input file (char string)
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10 | % hfig: handle of the display figure (a new display figure hfig_xls is created if hfig undefined)
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11 |
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12 | %=======================================================================
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13 | % Copyright 2008-2017, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France
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14 | % http://www.legi.grenoble-inp.fr
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15 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr
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16 | %
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17 | % This file is part of the toolbox UVMAT.
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18 | %
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19 | % UVMAT is free software; you can redistribute it and/or modify
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20 | % it under the terms of the GNU General Public License as published
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21 | % by the Free Software Foundation; either version 2 of the license,
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22 | % or (at your option) any later version.
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23 | %
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24 | % UVMAT is distributed in the hope that it will be useful,
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25 | % but WITHOUT ANY WARRANTY; without even the implied warranty of
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26 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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27 | % GNU General Public License (see LICENSE.txt) for more details.
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28 | %=======================================================================
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29 |
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30 | function [hfig_xls]=read_xls(fileinput,hfig)
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31 | [Tabnum,Tabtext]=xlsread(fileinput);
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32 | [textnx,textny]=size(Tabtext);
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33 | [numnx,numny]=size(Tabnum);
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34 | ilastxt=textnx-numnx;%index of last text row
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35 | jlastxt=textny-numny;%index of last text column
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36 | for jtab=1:textny%read line
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37 | for itab=1:textnx% read column
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38 | textlu=cell2mat(Tabtext(itab,jtab));
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39 | if isequal(textlu,[])& itab > ilastxt & jtab > jlastxt %replace txt by number
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40 | textlu=num2str(Tabnum(itab-ilastxt,jtab-jlastxt));
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41 | end
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42 | Tabdisplay(itab,jtab)={textlu};
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43 | lengthtext(itab)=length(textlu);
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44 | end
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45 | widthcolumn(jtab)=max(lengthtext);
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46 | end
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47 | Tabchar={};%default
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48 | for itab=1:textnx %justify table
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49 | charchain=[];
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50 | for jtab=1:textny% read line
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51 | textlu=Tabdisplay{itab,jtab};
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52 | if widthcolumn(jtab)>length(textlu)
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53 | blankstr=char(46*ones(1,widthcolumn(jtab)-length(textlu)));
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54 | textlu=[textlu blankstr ];
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55 | end
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56 | charchain=[charchain textlu char(9) ' | '];
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57 | end
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58 | Tabchar(itab)={charchain};
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59 | end
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60 | if exist('hfig','var') & ishandle(hfig)
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61 | figure(hfig);
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62 | hfig_xls=hfig;
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63 | else
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64 | hfig_xls=figure;
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65 | end
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66 | set(hfig_xls,'Name',fileinput)
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67 | set(hfig_xls,'MenuBar','none')
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68 | hpos=get(hfig_xls,'Pos');
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69 | ExpName.cell=Tabtext([2:textnx],1);%first column (dir name)
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70 | ExpName.Num=Tabnum;
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71 | % ExpName.Units=Tabtext(2,[2:textny]);%look for the units line (needs to be the second line)
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72 | iparam=0;
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73 | for icol=2:textny
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74 | % Tabtext(2,icol)
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75 | if ~isempty(Tabtext{2,icol})&~isequal(Tabtext{2,icol},'')
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76 | iparam=iparam+1;
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77 | ExpName.Param{iparam}=Tabtext{1,icol};
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78 | ExpName.Units{iparam}=Tabtext{2,icol};
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79 | ExpName.Column(iparam)=icol;
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80 | end
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81 | end
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82 |
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83 | ExpName.path=fileparts(fileinput);
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84 | h=uicontrol('Style','listbox', 'Position', [5 5 0.9*hpos(3) 0.9*hpos(4)], 'String', Tabchar, ...
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85 | 'FontName','Monospaced','Callback',@link2file,'UserData',ExpName,'Tag','listbox');
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86 | % hh=uicontrol('Style','Pushbutton', 'Position', [0.93*hpos(1) 0.93*hpos(2) 0.05*hpos(3) 0.05*hpos(4)], 'String', 'Update','Callback',@project_update);
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87 | % set(h,'HorizontalAlignment','left')
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88 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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89 | %called by xlsdisplay to navigate from a .xls file or create the
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90 | % the experiment directories
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91 | function link2file(obj,event,fileinput)
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92 | global t
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93 | bla=get(gcbo,'String');
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94 | ind=get(gcbo,'Value')
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95 | if (ind==1|ind==2),return,end; %no action on the first line
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96 | ExpNameStruct=get(gcbo,'UserData')
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97 | ExpName=ExpNameStruct.cell{ind-1}
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98 | ProjectFullName=ExpNameStruct.path;%full name of the project (including path)
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99 | [Pth,ProjectName]=fileparts(ProjectFullName);
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100 | ExpPath=fullfile(ProjectFullName,ExpName);% full name of the experiment directory
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101 | ExpDocName=fullfile(ExpPath,[ExpName '.xml']);% full name of the .xml file ExpDoc
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102 | if exist(ExpDocName,'file')
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103 | hh=editxml({ExpDocName})
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104 | % [FileName, PathName, filterindex] = uigetfile( ...
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105 | % {'*.xml','(*.xml)';
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106 | % '*.xml', '.xml files ';
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107 | % '*.*', 'All Files (*.*)'}, ...
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108 | % 'Pick a file',ExpDocName);
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109 | % fileinput=[PathName FileName];%complete file name
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110 | % sizf=size(fileinput);
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111 | % if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end
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112 | % [path,name,ext]=fileparts(fileinput);
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113 | % if isequal(ext,'.civ') | isequal(ext,'.log') | isequal(ext,'.cmx') isequal(ext,'.txt')
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114 | % edit(fileinput)
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115 | % elseif isequal(ext,'.xml')
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116 | % varargin{1}=fileinput;
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117 | % editxml(varargin)
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118 | % elseif isequal(ext,'.fig')
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119 | % open(fileinput)
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120 | % elseif isequal(ext,'.xls')
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121 | % xlsdisplay(fileinput)
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122 | % else
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123 | % uvmat({fileinput})
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124 | % end
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125 | else
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126 | answer=questdlg({['ExpDoc file ' ExpDocName ' does not exist, create the experiment?'];''})
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127 | if isequal(answer,'Yes')
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128 | if exist(ExpPath,'dir')~=7 %create a directory if it does not exist
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129 | dircur=pwd; %current working directory
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130 | cd(ProjectFullName);
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131 | [m1,m2,m3]=mkdir(ExpName);
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132 | cd(pwd);%come back to the initial working dir
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133 | end
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134 | % %copy exp parameters
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135 | ParamNames=ExpNameStruct.Param;
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136 | ParamValues=ExpNameStruct.Num(ind-1,ExpNameStruct.Column-1);
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137 | ParamUnits=ExpNameStruct.Units;
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138 | t=xmltree;%new xmltree
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139 | t=set(t,1,'name','ExpDoc');
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140 | t=attributes(t,'add',1,'xmlns:xsi','none');
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141 | [t,ExpElement]=add(t,1,'element','Exp');
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142 | [t]=add(t,ExpElement,'chardata',ExpName);
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143 | for iparam=1:length(ParamNames)
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144 | [t,ParamElement]=add(t,1,'element',ParamNames{iparam});
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145 | t=add(t,ParamElement,'chardata',num2str(ParamValues(iparam)));
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146 | t=attributes(t,'add',ParamElement,'unit',ParamUnits{iparam}); %ADD UNIT ATTRIBUTE
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147 | end
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148 | list_dir=dir(ExpPath);%list of the Exp directory, detect sub-directories,.xml and image files
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149 | nbdir_exp=0;
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150 | %scan the Exp directory
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151 | for idir_exp=3:length(list_dir)
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152 | %detect subdirectories
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153 | if list_dir(idir_exp).isdir% 'device' subdirectories
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154 | nbdir_exp=nbdir_exp+1;
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155 | ExpData.Device{nbdir_exp}=list_dir(idir_exp).name;
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156 | [t,DeviceElement]=add(t,1,'element',list_dir(idir_exp).name);
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157 | t=attributes(t,'add',DeviceElement,'type','DEVICE_DIR');
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158 | t=attributes(t,'add',DeviceElement,'source','dir');
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159 | list_subdir=dir(fullfile(ExpPath,list_dir(idir_exp).name));
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160 | nbsubdir=0;
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161 | testrecord=1;
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162 | RootIma='';
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163 | RootNc='';
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164 | nbfile=0;
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165 | % nbfile={};
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166 | %scan the Device subdirectory
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167 | for isubdir=3:length(list_subdir)
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168 | if list_subdir(isubdir).isdir
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169 | nbsubdir=nbsubdir+1;
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170 | Device.Record{nbsubdir}=list_subdir(isubdir).name;
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171 | else
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172 | nbfile=nbfile+1;
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173 | fname{nbfile}=list_subdir(isubdir).name;
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174 | end
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175 | end
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176 | if isunix%sort by root names and indices , change the separator '_' so that 1_1 come as the first name
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177 | fname_mod=regexprep(fname,'_','/');
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178 | fname_mod=sort(fname_mod); %sort by name
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179 | fname=regexprep(fname_mod,'/','_');
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180 | end
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181 | for ifile=1:nbfile;
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182 | [Path,Name,Ext]=fileparts(fname{ifile});
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183 | if isequal(Ext,'.xml')
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184 | [t,ImaDocElement]=add(t,DeviceElement,'element','ImaDoc');
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185 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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186 | t=attributes(t,'add',ImaDocElement,'source','file');
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187 | testrecord=0;%we have an image series without 'record' subdir
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188 | elseif isequal(Ext,'.png')
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189 | %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile});
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190 | [~,~,Root]=fileparts_uvmat(fname{ifile});
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191 | if ~isequal(Root,RootIma)%only one image recorded for each root name
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192 | [t,ImaDocElement]=add(t,DeviceElement,'element','Image');
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193 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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194 | t=attributes(t,'add',ImaDocElement,'source','file');
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195 | RootIma=Root;
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196 | end
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197 | testrecord=0;%we have an image series without 'record' subdir
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198 | elseif isequal(Ext,'.nc')
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199 | %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile});
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200 | [~,~,Root]=fileparts_uvmat(fname{ifile});
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201 | if ~isequal(Root,RootNc)%only one image recorded for each root name
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202 | [t,ImaDocElement]=add(t,DeviceElement,'element','Ncdata');
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203 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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204 | t=attributes(t,'add',ImaDocElement,'source','file');
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205 | RootNc=Root;
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206 | end
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207 | testrecord=0;%we have an image series without 'record' subdir
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208 | end
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209 | end
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210 | if testrecord
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211 | %the subdevice directory is 'record' (no images detected at this level)
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212 | for idir_s=1:nbsubdir
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213 | [t,RecordElement]=add(t,DeviceElement,'element',Device.Record{idir_s});
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214 | t=attributes(t,'add',RecordElement,'type','RECORD_DIR');
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215 | t=attributes(t,'add',RecordElement,'source','dir');
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216 | list_subdir=dir(fullfile(ExpPath,list_dir(idir_exp).name,Device.Record{idir_s}));
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217 | nbsubdir=0;
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218 | RootIma='';
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219 | RootNc='';
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220 | nbfile=0;
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221 | fname={};
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222 | for isubdir=3:length(list_subdir)
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223 | if list_subdir(isubdir).isdir
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224 | nbsubdir=nbsubdir+1;
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225 | [t,RecordElement]=add(t,DeviceElement,'element',Device.Record{idir_exp});
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226 | t=attributes(t,'add',RecordElement,'type','RECORD_DIR');
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227 | t=attributes(t,'add',RecordElement,'source','dir');
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228 | %VOIR les .netcdf a l'interieur
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229 | else
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230 | nbfile=nbfile+1;
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231 | fname{nbfile}=list_subdir(isubdir).name;
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232 | end
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233 | end
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234 | if isunix
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235 | fname_mod=regexprep(fname,'_','/');
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236 | fname_mod=sort(fname_mod); %sort by name
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237 | fname=regexprep(fname_mod,'/','_');
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238 | end
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239 | for ifile=1:nbfile;
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240 | [Path,Name,Ext]=fileparts(fname{ifile});
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241 | if isequal(Ext,'.xml')
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242 | [t,ImaDocElement]=add(t,DeviceElement,'element','ImaDoc');
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243 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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244 | t=attributes(t,'add',ImaDocElement,'source','file');
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245 | elseif isequal(Ext,'.png')
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246 | % [Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile});
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247 | [~,~,Root]=fileparts_uvmat(fname{ifile});
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248 | if ~isequal(Root,RootIma)
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249 | [t,ImaDocElement]=add(t,DeviceElement,'element','Image');
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250 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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251 | t=attributes(t,'add',ImaDocElement,'source','file');
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252 | RootIma=Root;
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253 | end
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254 | elseif isequal(Ext,'.nc')
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255 | %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile});
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256 | [~,~,Root]=fileparts_uvmat(fname{ifile});
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257 | if ~isequal(Root,RootNc)%only one image recorded for each root name
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258 | [t,ImaDocElement]=add(t,DeviceElement,'element','Ncdata');
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259 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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260 | t=attributes(t,'add',ImaDocElement,'source','file');
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261 | RootNc=Root;
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262 | end
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263 | end
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264 | end
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265 | end
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266 | else%the subdevice directory is a civ directory (coexist with images)
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267 | for idir_s=1:nbsubdir
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268 | [t,RecordElement]=add(t,DeviceElement,'element',Device.Record{idir_s});
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269 | t=attributes(t,'add',RecordElement,'type','CIV_DIR');
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270 | t=attributes(t,'add',RecordElement,'source','dir');
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271 | %list files under the civ directory
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272 | list_subdir=dir(fullfile(ExpPath,list_dir(idir_exp).name,Device.Record{idir_s}));
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273 |
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274 | nbsubdir=0;
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275 | nbfile=0;
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276 | RootXml='';
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277 | RootNc='';
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278 | fname={};
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279 | for isubdir=3:length(list_subdir)
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280 | if list_subdir(isubdir).isdir
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281 | nbsubdir=nbsubdir+1;
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282 | [t,SubElement]=add(t,RecordElement,'element',list_subdir(isubdir).name);
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283 | t=attributes(t,'add',SubElement,'type','UNKNOWN_DIR');
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284 | t=attributes(t,'add',SubElement,'source','dir');
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285 | else
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286 | nbfile=nbfile+1;
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287 | fname{nbfile}=list_subdir(isubdir).name;
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288 | end
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289 | end
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290 | if isunix
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291 | fname_mod=regexprep(fname,'_','/');
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292 | fname_mod=sort(fname_mod); %sort by name
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293 | fname=regexprep(fname_mod,'/','_');
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294 | end
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295 | for ifile=1:nbfile;
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296 | [Path,Name,Ext]=fileparts(fname{ifile});
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297 | if isequal(Ext,'.xml')
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298 | %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile});
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299 | [~,~,Root]=fileparts_uvmat(fname{ifile});
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300 | if ~isequal(Root,RootXml)%only one image recorded for each root name
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301 | [t,ImaDocElement]=add(t,RecordElement,'element','CivDoc');
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302 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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303 | t=attributes(t,'add',ImaDocElement,'source','file');
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304 | RootXml=Root;
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305 | end
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306 | elseif isequal(Ext,'.nc')
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307 | %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile});
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308 | [~,~,Root]=fileparts_uvmat(fname{ifile});
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309 | if ~isequal(Root,RootNc)%only one image recorded for each root name
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310 | [t,ImaDocElement]=add(t,RecordElement,'element','Ncdata');
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311 | t=add(t,ImaDocElement,'chardata',fname{ifile});
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312 | t=attributes(t,'add',ImaDocElement,'source','file');
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313 | RootNc=Root;
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314 | end
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315 | end
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316 | end
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317 | end
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318 | end
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319 | end
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320 | end
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321 | save(t);%display xml file on the screen
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322 | save(t,ExpDocName);
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323 | end
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324 | end
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325 | % [erread,message]=fileattrib('./DATA');
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326 | % if ~isempty(message) & ~isequal(message.UserWrite,1)
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327 | % errordlg(['Need writting access to ' message.Name])
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328 | % return
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329 | % end
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330 |
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331 |
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332 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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333 | function project_update(obj,event,fileinput)
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334 | hchild=get(gcbf,'children');
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335 | h=findobj(gcbf,'Tag','listbox')
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336 |
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