%'read_xls': function for reading and displaying Excel files %------------------------------------------------------------------------ % function [hfig_xls]=read_xls(fileinput,hfig) % % OUTPUT: % hfig_xls: figure handle for display % % INPUT: % fileinput: name of the input file (char string) % hfig: handle of the display figure (a new display figure hfig_xls is created if hfig undefined) % %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA % This file is part of the toolbox UVMAT. % % UVMAT is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published by % the Free Software Foundation; either version 2 of the License, or % (at your option) any later version. % % UVMAT is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License (file UVMAT/COPYING.txt) for more details. %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA function [hfig_xls]=read_xls(fileinput,hfig) [Tabnum,Tabtext]=xlsread(fileinput); [textnx,textny]=size(Tabtext); [numnx,numny]=size(Tabnum); ilastxt=textnx-numnx;%index of last text row jlastxt=textny-numny;%index of last text column for jtab=1:textny%read line for itab=1:textnx% read column textlu=cell2mat(Tabtext(itab,jtab)); if isequal(textlu,[])& itab > ilastxt & jtab > jlastxt %replace txt by number textlu=num2str(Tabnum(itab-ilastxt,jtab-jlastxt)); end Tabdisplay(itab,jtab)={textlu}; lengthtext(itab)=length(textlu); end widthcolumn(jtab)=max(lengthtext); end Tabchar={};%default for itab=1:textnx %justify table charchain=[]; for jtab=1:textny% read line textlu=Tabdisplay{itab,jtab}; if widthcolumn(jtab)>length(textlu) blankstr=char(46*ones(1,widthcolumn(jtab)-length(textlu))); textlu=[textlu blankstr ]; end charchain=[charchain textlu char(9) ' | ']; end Tabchar(itab)={charchain}; end if exist('hfig','var') & ishandle(hfig) figure(hfig); hfig_xls=hfig; else hfig_xls=figure; end set(hfig_xls,'Name',fileinput) set(hfig_xls,'MenuBar','none') hpos=get(hfig_xls,'Pos'); ExpName.cell=Tabtext([2:textnx],1);%first column (dir name) ExpName.Num=Tabnum; % ExpName.Units=Tabtext(2,[2:textny]);%look for the units line (needs to be the second line) iparam=0; for icol=2:textny % Tabtext(2,icol) if ~isempty(Tabtext{2,icol})&~isequal(Tabtext{2,icol},'') iparam=iparam+1; ExpName.Param{iparam}=Tabtext{1,icol}; ExpName.Units{iparam}=Tabtext{2,icol}; ExpName.Column(iparam)=icol; end end ExpName.path=fileparts(fileinput); h=uicontrol('Style','listbox', 'Position', [5 5 0.9*hpos(3) 0.9*hpos(4)], 'String', Tabchar, ... 'FontName','Monospaced','Callback',@link2file,'UserData',ExpName,'Tag','listbox'); % hh=uicontrol('Style','Pushbutton', 'Position', [0.93*hpos(1) 0.93*hpos(2) 0.05*hpos(3) 0.05*hpos(4)], 'String', 'Update','Callback',@project_update); % set(h,'HorizontalAlignment','left') %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %called by xlsdisplay to navigate from a .xls file or create the % the experiment directories function link2file(obj,event,fileinput) global t bla=get(gcbo,'String'); ind=get(gcbo,'Value') if (ind==1|ind==2),return,end; %no action on the first line ExpNameStruct=get(gcbo,'UserData') ExpName=ExpNameStruct.cell{ind-1} ProjectFullName=ExpNameStruct.path;%full name of the project (including path) [Pth,ProjectName]=fileparts(ProjectFullName); ExpPath=fullfile(ProjectFullName,ExpName);% full name of the experiment directory ExpDocName=fullfile(ExpPath,[ExpName '.xml']);% full name of the .xml file ExpDoc if exist(ExpDocName,'file') hh=editxml({ExpDocName}) % [FileName, PathName, filterindex] = uigetfile( ... % {'*.xml','(*.xml)'; % '*.xml', '.xml files '; % '*.*', 'All Files (*.*)'}, ... % 'Pick a file',ExpDocName); % fileinput=[PathName FileName];%complete file name % sizf=size(fileinput); % if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end % [path,name,ext]=fileparts(fileinput); % if isequal(ext,'.civ') | isequal(ext,'.log') | isequal(ext,'.cmx') isequal(ext,'.txt') % edit(fileinput) % elseif isequal(ext,'.xml') % varargin{1}=fileinput; % editxml(varargin) % elseif isequal(ext,'.fig') % open(fileinput) % elseif isequal(ext,'.xls') % xlsdisplay(fileinput) % else % uvmat({fileinput}) % end else answer=questdlg({['ExpDoc file ' ExpDocName ' does not exist, create the experiment?'];''}) if isequal(answer,'Yes') if exist(ExpPath,'dir')~=7 %create a directory if it does not exist dircur=pwd; %current working directory cd(ProjectFullName); [m1,m2,m3]=mkdir(ExpName); cd(pwd);%come back to the initial working dir end % %copy exp parameters ParamNames=ExpNameStruct.Param; ParamValues=ExpNameStruct.Num(ind-1,ExpNameStruct.Column-1); ParamUnits=ExpNameStruct.Units; t=xmltree;%new xmltree t=set(t,1,'name','ExpDoc'); t=attributes(t,'add',1,'xmlns:xsi','none'); [t,ExpElement]=add(t,1,'element','Exp'); [t]=add(t,ExpElement,'chardata',ExpName); for iparam=1:length(ParamNames) [t,ParamElement]=add(t,1,'element',ParamNames{iparam}); t=add(t,ParamElement,'chardata',num2str(ParamValues(iparam))); t=attributes(t,'add',ParamElement,'unit',ParamUnits{iparam}); %ADD UNIT ATTRIBUTE end list_dir=dir(ExpPath);%list of the Exp directory, detect sub-directories,.xml and image files nbdir_exp=0; %scan the Exp directory for idir_exp=3:length(list_dir) %detect subdirectories if list_dir(idir_exp).isdir% 'device' subdirectories nbdir_exp=nbdir_exp+1; ExpData.Device{nbdir_exp}=list_dir(idir_exp).name; [t,DeviceElement]=add(t,1,'element',list_dir(idir_exp).name); t=attributes(t,'add',DeviceElement,'type','DEVICE_DIR'); t=attributes(t,'add',DeviceElement,'source','dir'); list_subdir=dir(fullfile(ExpPath,list_dir(idir_exp).name)); nbsubdir=0; testrecord=1; RootIma=''; RootNc=''; nbfile=0; % nbfile={}; %scan the Device subdirectory for isubdir=3:length(list_subdir) if list_subdir(isubdir).isdir nbsubdir=nbsubdir+1; Device.Record{nbsubdir}=list_subdir(isubdir).name; else nbfile=nbfile+1; fname{nbfile}=list_subdir(isubdir).name; end end if isunix%sort by root names and indices , change the separator '_' so that 1_1 come as the first name fname_mod=regexprep(fname,'_','/'); fname_mod=sort(fname_mod); %sort by name fname=regexprep(fname_mod,'/','_'); end for ifile=1:nbfile; [Path,Name,Ext]=fileparts(fname{ifile}); if isequal(Ext,'.xml') [t,ImaDocElement]=add(t,DeviceElement,'element','ImaDoc'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); testrecord=0;%we have an image series without 'record' subdir elseif isequal(Ext,'.png') %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile}); [~,~,Root]=fileparts_uvmat(fname{ifile}); if ~isequal(Root,RootIma)%only one image recorded for each root name [t,ImaDocElement]=add(t,DeviceElement,'element','Image'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); RootIma=Root; end testrecord=0;%we have an image series without 'record' subdir elseif isequal(Ext,'.nc') %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile}); [~,~,Root]=fileparts_uvmat(fname{ifile}); if ~isequal(Root,RootNc)%only one image recorded for each root name [t,ImaDocElement]=add(t,DeviceElement,'element','Ncdata'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); RootNc=Root; end testrecord=0;%we have an image series without 'record' subdir end end if testrecord %the subdevice directory is 'record' (no images detected at this level) for idir_s=1:nbsubdir [t,RecordElement]=add(t,DeviceElement,'element',Device.Record{idir_s}); t=attributes(t,'add',RecordElement,'type','RECORD_DIR'); t=attributes(t,'add',RecordElement,'source','dir'); list_subdir=dir(fullfile(ExpPath,list_dir(idir_exp).name,Device.Record{idir_s})); nbsubdir=0; RootIma=''; RootNc=''; nbfile=0; fname={}; for isubdir=3:length(list_subdir) if list_subdir(isubdir).isdir nbsubdir=nbsubdir+1; [t,RecordElement]=add(t,DeviceElement,'element',Device.Record{idir_exp}); t=attributes(t,'add',RecordElement,'type','RECORD_DIR'); t=attributes(t,'add',RecordElement,'source','dir'); %VOIR les .netcdf a l'interieur else nbfile=nbfile+1; fname{nbfile}=list_subdir(isubdir).name; end end if isunix fname_mod=regexprep(fname,'_','/'); fname_mod=sort(fname_mod); %sort by name fname=regexprep(fname_mod,'/','_'); end for ifile=1:nbfile; [Path,Name,Ext]=fileparts(fname{ifile}); if isequal(Ext,'.xml') [t,ImaDocElement]=add(t,DeviceElement,'element','ImaDoc'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); elseif isequal(Ext,'.png') % [Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile}); [~,~,Root]=fileparts_uvmat(fname{ifile}); if ~isequal(Root,RootIma) [t,ImaDocElement]=add(t,DeviceElement,'element','Image'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); RootIma=Root; end elseif isequal(Ext,'.nc') %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile}); [~,~,Root]=fileparts_uvmat(fname{ifile}); if ~isequal(Root,RootNc)%only one image recorded for each root name [t,ImaDocElement]=add(t,DeviceElement,'element','Ncdata'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); RootNc=Root; end end end end else%the subdevice directory is a civ directory (coexist with images) for idir_s=1:nbsubdir [t,RecordElement]=add(t,DeviceElement,'element',Device.Record{idir_s}); t=attributes(t,'add',RecordElement,'type','CIV_DIR'); t=attributes(t,'add',RecordElement,'source','dir'); %list files under the civ directory list_subdir=dir(fullfile(ExpPath,list_dir(idir_exp).name,Device.Record{idir_s})); nbsubdir=0; nbfile=0; RootXml=''; RootNc=''; fname={}; for isubdir=3:length(list_subdir) if list_subdir(isubdir).isdir nbsubdir=nbsubdir+1; [t,SubElement]=add(t,RecordElement,'element',list_subdir(isubdir).name); t=attributes(t,'add',SubElement,'type','UNKNOWN_DIR'); t=attributes(t,'add',SubElement,'source','dir'); else nbfile=nbfile+1; fname{nbfile}=list_subdir(isubdir).name; end end if isunix fname_mod=regexprep(fname,'_','/'); fname_mod=sort(fname_mod); %sort by name fname=regexprep(fname_mod,'/','_'); end for ifile=1:nbfile; [Path,Name,Ext]=fileparts(fname{ifile}); if isequal(Ext,'.xml') %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile}); [~,~,Root]=fileparts_uvmat(fname{ifile}); if ~isequal(Root,RootXml)%only one image recorded for each root name [t,ImaDocElement]=add(t,RecordElement,'element','CivDoc'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); RootXml=Root; end elseif isequal(Ext,'.nc') %[Path,Root,field_count,str2,str_a,str_b,ext,nom_type,subdir]=name2display(fname{ifile}); [~,~,Root]=fileparts_uvmat(fname{ifile}); if ~isequal(Root,RootNc)%only one image recorded for each root name [t,ImaDocElement]=add(t,RecordElement,'element','Ncdata'); t=add(t,ImaDocElement,'chardata',fname{ifile}); t=attributes(t,'add',ImaDocElement,'source','file'); RootNc=Root; end end end end end end end save(t);%display xml file on the screen save(t,ExpDocName); end end % [erread,message]=fileattrib('./DATA'); % if ~isempty(message) & ~isequal(message.UserWrite,1) % errordlg(['Need writting access to ' message.Name]) % return % end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function project_update(obj,event,fileinput) hchild=get(gcbf,'children'); h=findobj(gcbf,'Tag','listbox')