[2] | 1 | %'series': master function associated to the GUI series.m for analysis field series |
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| 2 | %------------------------------------------------------------------------ |
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| 3 | % function varargout = series(varargin) |
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| 4 | % associated with the GUI series.fig |
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| 5 | % |
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| 6 | %INPUT |
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| 7 | % param: structure with input parameters (link with the GUI uvmat) |
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| 8 | % .menu_coord_str: string for the CoordType (menu for coordinate transforms) |
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| 9 | % .menu_coord_val: value for CoordType (menu for coordinate transforms) |
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| 10 | % .FileName: input file name |
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| 11 | % .FileName_1: second input file name |
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| 12 | % .list_field: menu of input fields |
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| 13 | % .index_fields: chosen index |
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| 14 | % .civ1=0 or 1, .interp1, ... : input civ field type |
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| 15 | % |
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| 16 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 17 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. |
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| 18 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 19 | % This file is part of the toolbox UVMAT. |
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| 20 | % |
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| 21 | % UVMAT is free software; you can redistribute it and/or modify |
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| 22 | % it under the terms of the GNU General Public License as published by |
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| 23 | % the Free Software Foundation; either version 2 of the License, or |
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| 24 | % (at your option) any later version. |
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| 25 | % |
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| 26 | % UVMAT is distributed in the hope that it will be useful, |
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| 27 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 28 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 29 | % GNU General Public License (file UVMAT/COPYING.txt) for more details. |
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| 30 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 31 | |
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| 32 | function varargout = series(varargin) |
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| 33 | |
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| 34 | % Begin initialization code - DO NOT EDIT |
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| 35 | gui_Singleton = 1; |
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| 36 | gui_State = struct('gui_Name', mfilename, ... |
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| 37 | 'gui_Singleton', gui_Singleton, ... |
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| 38 | 'gui_OpeningFcn', @series_OpeningFcn, ... |
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| 39 | 'gui_OutputFcn', @series_OutputFcn, ... |
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| 40 | 'gui_LayoutFcn', [] , ... |
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| 41 | 'gui_Callback', []); |
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| 42 | if nargin && ischar(varargin{1}) |
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| 43 | gui_State.gui_Callback = str2func(varargin{1}); |
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| 44 | end |
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| 45 | |
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| 46 | if nargout |
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| 47 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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| 48 | else |
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| 49 | gui_mainfcn(gui_State, varargin{:}); |
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| 50 | end |
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| 51 | % End initialization code - DO NOT EDIT |
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| 52 | |
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| 53 | %-------------------------------------------------------------------------- |
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| 54 | % --- Executes just before series is made visible. |
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| 55 | %-------------------------------------------------------------------------- |
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| 56 | function series_OpeningFcn(hObject, eventdata, handles,param) |
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| 57 | |
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| 58 | % Choose default command line output for series |
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| 59 | handles.output = hObject; |
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| 60 | % Update handles structure |
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| 61 | guidata(hObject, handles); |
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| 62 | %default initial parameters |
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| 63 | |
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| 64 | %load the list of previously browsed files in menus Open and Open_1 |
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| 65 | dir_perso=prefdir; |
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| 66 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 67 | if exist(profil_perso,'file') |
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| 68 | h=load (profil_perso); |
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| 69 | if isfield(h,'MenuFile_1') |
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| 70 | set(handles.MenuFile_1,'Label',h.MenuFile_1); |
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| 71 | set(handles.MenuFile_insert_1,'Label',h.MenuFile_1); |
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| 72 | end |
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| 73 | if isfield(h,'MenuFile_1') |
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| 74 | set(handles.MenuFile_2,'Label',h.MenuFile_2); |
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| 75 | set(handles.MenuFile_insert_2,'Label',h.MenuFile_2); |
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| 76 | end |
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| 77 | if isfield(h,'MenuFile_1') |
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| 78 | set(handles.MenuFile_3,'Label',h.MenuFile_3); |
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| 79 | set(handles.MenuFile_insert_3,'Label',h.MenuFile_3); |
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| 80 | end |
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| 81 | if isfield(h,'MenuFile_1') |
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| 82 | set(handles.MenuFile_4,'Label',h.MenuFile_4); |
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| 83 | set(handles.MenuFile_insert_4,'Label',h.MenuFile_4); |
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| 84 | end |
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| 85 | if isfield(h,'MenuFile_1') |
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| 86 | set(handles.MenuFile_5,'Label',h.MenuFile_5); |
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| 87 | set(handles.MenuFile_insert_5,'Label',h.MenuFile_5); |
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| 88 | end |
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| 89 | end |
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| 90 | |
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| 91 | %check default input data |
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| 92 | if ~exist('param','var') |
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| 93 | param=[]; %default |
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| 94 | end |
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| 95 | |
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| 96 | %file name and browser initialisation |
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| 97 | if isfield(param,'menu_coord_str') |
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| 98 | set(handles.CoordType,'String',param.menu_coord_str) |
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| 99 | end |
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| 100 | if isfield(param,'menu_coord_val') |
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| 101 | set(handles.CoordType,'Value',param.menu_coord_val); |
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| 102 | else |
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| 103 | set(handles.CoordType,'Value',1);%default |
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| 104 | end |
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| 105 | |
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| 106 | if isfield(param,'FileName') |
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| 107 | if isfield(param,'FileName_1') |
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| 108 | update_file(hObject, eventdata, handles,param.FileName_1,0) |
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| 109 | update_file(hObject, eventdata, handles,param.FileName,1) |
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| 110 | else |
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| 111 | update_file(hObject, eventdata, handles,param.FileName,0) |
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| 112 | end |
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| 113 | end |
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| 114 | |
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| 115 | %fields input initialisation |
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| 116 | if isfield(param,'list_fields')&& isfield(param,'index_fields') &&~isempty(param.list_fields) &&~isempty(param.index_fields) |
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| 117 | set(handles.FieldMenu,'String',param.list_fields);% list menu fields |
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| 118 | set(handles.FieldMenu,'Value',param.index_fields);% selected string index |
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| 119 | FieldCell{1}=param.list_fields{param.index_fields}; |
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| 120 | end |
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| 121 | if isfield(param,'civ1')&& islogical(param.civ1) && isfield(param,'civ2')&& islogical(param.civ2)&... |
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| 122 | isfield(param,'interp1')&& islogical(param.interp1)&&isfield(param,'interp2')&& islogical(param.interp2)&... |
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| 123 | isfield(param,'filter1')&& islogical(param.filter1)&&isfield(param,'filter2')&& islogical(param.filter2) |
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| 124 | set(handles.civ1,'Value',param.civ1); |
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| 125 | set(handles.civ2,'Value',param.civ1); |
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| 126 | set(handles.interp1,'Value',param.interp1); |
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| 127 | set(handles.interp2,'Value',param.interp2); |
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| 128 | set(handles.filter1,'Value',param.filter1); |
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| 129 | set(handles.filter2,'Value',param.filter2); |
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| 130 | end |
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| 131 | %set(hObject,'UserData', SeriesData) |
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| 132 | set(hObject,'WindowButtonUpFcn',{@mouse_up_gui,handles}) |
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| 133 | NomType_Callback(hObject, eventdata, handles) |
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| 134 | %mode_Callback(hObject, eventdata, handles) |
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| 135 | |
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| 136 | %loads the information stored in prefdir to initiate the browser and the list of functions |
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| 137 | menu_str=get(handles.ACTION,'String');%list of functions included in 'series.m' |
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| 138 | menu_str(end)=[];%remove from the list the last option 'more...' |
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| 139 | path_series=which('series');%path of the function 'series' |
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| 140 | for ilist=1:length(menu_str) |
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| 141 | fct_path{ilist,1}=path_series;%paths of the fuctions buil-in in 'series.m' |
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| 142 | end |
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| 143 | dir_perso=prefdir; |
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| 144 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 145 | if exist(profil_perso,'file') |
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| 146 | h=load (profil_perso); |
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| 147 | if isfield(h,'series_fct') && iscell(h.series_fct) |
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| 148 | for ilist=1:length(h.series_fct) |
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| 149 | [path,file]=fileparts(h.series_fct{ilist}); |
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| 150 | fct_path=[fct_path; {path}];%concatene the list of paths |
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| 151 | menu_str=[menu_str; {file}]; |
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| 152 | end |
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| 153 | menu_str=[menu_str;{'more...'}]; |
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| 154 | set(handles.ACTION,'String',menu_str) |
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| 155 | end |
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| 156 | end |
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| 157 | set(handles.ACTION,'UserData',fct_path)% store the list of path in UserData of ACTION |
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| 158 | |
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| 159 | % display the GUI for the default action 'check_files' |
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| 160 | ACTION_Callback(hObject, eventdata, handles) |
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| 161 | |
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| 162 | %-------------------------------------------------------------- |
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| 163 | % --- Outputs from this function are returned to the command line. |
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| 164 | %----------------------------------------------------------------- |
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| 165 | function varargout = series_OutputFcn(hObject, eventdata, handles) |
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| 166 | % varargout cell array for returning output args (see VARARGOUT); |
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| 167 | % hObject handle to figure |
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| 168 | % eventdata reserved - to be defined in a future version of MATLAB |
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| 169 | % handles structure with handles and user data (see GUIDATA) |
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| 170 | % Get default command line output from handles structure |
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| 171 | varargout{1} = handles.output; |
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| 172 | |
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| 173 | |
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| 174 | % -------------------------------------------------------------------- |
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| 175 | function MenuBrowse_Callback(hObject, eventdata, handles) |
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| 176 | |
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| 177 | RootPathCell=get(handles.RootPath,'String'); |
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| 178 | SubDirCell=get(handles.SubDir,'String'); |
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| 179 | RootFileCell=get(handles.RootFile,'String'); |
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| 180 | oldfile=''; %default |
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| 181 | if isempty(RootPathCell)|isequal(RootPathCell,{''})%loads the previously stored file name and set it as default in the file_input box |
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| 182 | dir_perso=prefdir; |
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| 183 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 184 | if exist(profil_perso,'file') |
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| 185 | h=load (profil_perso); |
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| 186 | if isfield(h,'filebase')&ischar(h.filebase) |
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| 187 | oldfile=h.filebase; |
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| 188 | end |
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| 189 | if isfield(h,'RootPath')&ischar(h.RootPath) |
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| 190 | oldfile=h.RootPath; |
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| 191 | end |
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| 192 | end |
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| 193 | else |
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| 194 | oldfile=fullfile(RootPathCell{1},SubDirCell{1},RootFileCell{1}); |
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| 195 | end |
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| 196 | [FileName, PathName, filterindex] = uigetfile( ... |
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| 197 | {'*.xml;*.xls;*.png;*.tif;*.avi;*.AVI;*.nc', ' (*.xml,*.xls, *.png,*.tif, *.avi,*.nc)'; |
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| 198 | '*.xml', '.xml files '; ... |
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| 199 | '*.xls', '.xls files '; ... |
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| 200 | '*.png','.png image files'; ... |
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| 201 | '*.tif','.tif image files'; ... |
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| 202 | '*.avi;*.AVI','.avi movie files'; ... |
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| 203 | '*.nc','.netcdf files'; ... |
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| 204 | '*.*', 'All Files (*.*)'}, ... |
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| 205 | 'Pick a file',oldfile); |
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| 206 | fileinput=[PathName FileName];%complete file name |
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| 207 | testblank=findstr(fileinput,' ');%look for blanks |
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| 208 | if ~isempty(testblank) |
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| 209 | errordlg('forbidden input file name: contain blanks') |
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| 210 | return |
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| 211 | end |
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| 212 | sizf=size(fileinput); |
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| 213 | if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end |
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| 214 | [path,name,ext]=fileparts(fileinput); |
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| 215 | SeriesData=[];%dfault |
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| 216 | if isequal(ext,'.xml') |
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| 217 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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| 218 | elseif isequal(ext,'.xls') |
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| 219 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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| 220 | else |
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| 221 | update_file(hObject, eventdata, handles,fileinput,0) |
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| 222 | %update list of recent files in the menubar |
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| 223 | MenuFile_1=fileinput; |
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| 224 | MenuFile_2=get(handles.MenuFile_1,'Label'); |
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| 225 | MenuFile_3=get(handles.MenuFile_2,'Label'); |
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| 226 | MenuFile_4=get(handles.MenuFile_3,'Label'); |
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| 227 | MenuFile_5=get(handles.MenuFile_4,'Label'); |
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| 228 | set(handles.MenuFile_1,'Label',MenuFile_1) |
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| 229 | set(handles.MenuFile_2,'Label',MenuFile_2) |
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| 230 | set(handles.MenuFile_3,'Label',MenuFile_3) |
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| 231 | set(handles.MenuFile_4,'Label',MenuFile_4) |
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| 232 | set(handles.MenuFile_5,'Label',MenuFile_5) |
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| 233 | set(handles.MenuFile_insert_1,'Label',MenuFile_1) |
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| 234 | set(handles.MenuFile_insert_2,'Label',MenuFile_2) |
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| 235 | set(handles.MenuFile_insert_3,'Label',MenuFile_3) |
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| 236 | set(handles.MenuFile_insert_4,'Label',MenuFile_4) |
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| 237 | set(handles.MenuFile_insert_5,'Label',MenuFile_5) |
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| 238 | dir_perso=prefdir; |
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| 239 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 240 | if exist(profil_perso,'file') |
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| 241 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-append'); %store the file names for future opening of uvmat |
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| 242 | else |
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| 243 | txt=ver; |
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| 244 | Release=txt(1).Release; |
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| 245 | relnumb=str2num(Release(3:4)); |
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| 246 | if relnumb >= 14 |
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| 247 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-V6'); %store the file names for future opening of uvmat |
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| 248 | else |
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| 249 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5'); %store the file names for future opening of uvmat |
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| 250 | end |
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| 251 | end |
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| 252 | end |
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| 253 | % set(hseries,'UserData',SeriesData); |
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| 254 | % RootFile_Callback(hObject, eventdata, handles); |
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| 255 | % FileExt_Callback(hObject, eventdata, handles); |
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| 256 | % NomType_Callback(hObject, eventdata, handles) |
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| 257 | % mode_Callback(hObject, eventdata, handles) |
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| 258 | |
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| 259 | |
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| 260 | % -------------------------------------------------------------------- |
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| 261 | function MenuFile_1_Callback(hObject, eventdata, handles) |
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| 262 | fileinput=get(handles.MenuFile_1,'Label'); |
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| 263 | update_file(hObject, eventdata, handles,fileinput,0) |
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| 264 | |
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| 265 | % -------------------------------------------------------------------- |
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| 266 | function MenuFile_2_Callback(hObject, eventdata, handles) |
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| 267 | fileinput=get(handles.MenuFile_2,'Label'); |
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| 268 | update_file(hObject, eventdata, handles,fileinput,0) |
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| 269 | |
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| 270 | % -------------------------------------------------------------------- |
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| 271 | function MenuFile_3_Callback(hObject, eventdata, handles) |
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| 272 | fileinput=get(handles.MenuFile_3,'Label'); |
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| 273 | update_file(hObject, eventdata, handles,fileinput,0) |
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| 274 | |
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| 275 | % -------------------------------------------------------------------- |
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| 276 | function MenuFile_4_Callback(hObject, eventdata, handles) |
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| 277 | fileinput=get(handles.MenuFile_4,'Label'); |
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| 278 | update_file(hObject, eventdata, handles,fileinput,0) |
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| 279 | |
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| 280 | % -------------------------------------------------------------------- |
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| 281 | function MenuFile_5_Callback(hObject, eventdata, handles) |
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| 282 | fileinput=get(handles.MenuFile_5,'Label'); |
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| 283 | update_file(hObject, eventdata, handles,fileinput,0) |
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| 284 | |
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| 285 | % -------------------------------------------------------------------- |
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| 286 | function MenuBrowse_insert_Callback(hObject, eventdata, handles) |
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| 287 | |
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| 288 | %hseries=get(handles.browse_root,'parent'); |
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| 289 | RootPathCell=get(handles.RootPath,'String'); |
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| 290 | % SubDirCell=get(handles.SubDir,'String'); |
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| 291 | RootFileCell=get(handles.RootFile,'String'); |
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| 292 | oldfile=''; %default |
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| 293 | if isempty(RootPathCell)|isequal(RootPathCell,{''})%loads the previously stored file name and set it as default in the file_input box |
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| 294 | dir_perso=prefdir; |
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| 295 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 296 | if exist(profil_perso,'file') |
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| 297 | h=load (profil_perso); |
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| 298 | if isfield(h,'filebase')&ischar(h.filebase) |
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| 299 | oldfile=h.filebase; |
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| 300 | end |
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| 301 | if isfield(h,'RootPath')&ischar(h.RootPath) |
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| 302 | oldfile=h.RootPath; |
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| 303 | end |
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| 304 | end |
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| 305 | else |
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| 306 | oldfile=fullfile(RootPathCell{1},RootFileCell{1}); |
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| 307 | end |
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| 308 | [FileName, PathName, filterindex] = uigetfile( ... |
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| 309 | {'*.xml;*.xls;*.png;*.avi;*.AVI;*.nc', ' (*.xml,*.xls, *.png, *.avi,*.nc)'; |
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| 310 | '*.xml', '.xml files '; ... |
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| 311 | '*.xls', '.xls files '; ... |
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| 312 | '*.png','.png image files'; ... |
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| 313 | '*.avi;*.AVI','.avi movie files'; ... |
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| 314 | '*.nc','.netcdf files'; ... |
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| 315 | '*.*', 'All Files (*.*)'}, ... |
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| 316 | 'Pick a file',oldfile); |
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| 317 | fileinput=[PathName FileName];%complete file name |
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| 318 | testblank=findstr(fileinput,' ');%look for blanks |
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| 319 | if ~isempty(testblank) |
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| 320 | errordlg('forbidden input file name: contain blanks') |
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| 321 | return |
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| 322 | end |
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| 323 | sizf=size(fileinput); |
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| 324 | if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end |
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| 325 | [path,name,ext]=fileparts(fileinput); |
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| 326 | SeriesData=[];%dfault |
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| 327 | if isequal(ext,'.xml') |
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| 328 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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| 329 | elseif isequal(ext,'.xls') |
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| 330 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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| 331 | else |
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| 332 | update_file(hObject, eventdata, handles,fileinput,1) |
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| 333 | %update list of recent files in the menubar |
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| 334 | MenuFile_1=fileinput; |
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| 335 | MenuFile_2=get(handles.MenuFile_1,'Label'); |
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| 336 | MenuFile_3=get(handles.MenuFile_2,'Label'); |
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| 337 | MenuFile_4=get(handles.MenuFile_3,'Label'); |
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| 338 | MenuFile_5=get(handles.MenuFile_4,'Label'); |
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| 339 | set(handles.MenuFile_1,'Label',MenuFile_1) |
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| 340 | set(handles.MenuFile_2,'Label',MenuFile_2) |
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| 341 | set(handles.MenuFile_3,'Label',MenuFile_3) |
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| 342 | set(handles.MenuFile_4,'Label',MenuFile_4) |
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| 343 | set(handles.MenuFile_5,'Label',MenuFile_5) |
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| 344 | set(handles.MenuFile_insert_1,'Label',MenuFile_1) |
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| 345 | set(handles.MenuFile_insert_2,'Label',MenuFile_2) |
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| 346 | set(handles.MenuFile_insert_3,'Label',MenuFile_3) |
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| 347 | set(handles.MenuFile_insert_4,'Label',MenuFile_4) |
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| 348 | set(handles.MenuFile_insert_5,'Label',MenuFile_5) |
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| 349 | dir_perso=prefdir; |
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| 350 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 351 | if exist(profil_perso,'file') |
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| 352 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-append'); %store the file names for future opening of uvmat |
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| 353 | else |
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| 354 | txt=ver; |
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| 355 | Release=txt(1).Release; |
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| 356 | relnumb=str2num(Release(3:4)); |
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| 357 | if relnumb >= 14 |
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| 358 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-V6'); %store the file names for future opening of uvmat |
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| 359 | else |
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| 360 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5'); %store the file names for future opening of uvmat |
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| 361 | end |
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| 362 | end |
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| 363 | end |
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| 364 | %------------------------------------------------ |
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| 365 | |
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| 366 | % -------------------------------------------------------------------- |
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| 367 | function MenuFile_insert_1_Callback(hObject, eventdata, handles) |
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| 368 | fileinput=get(handles.MenuFile_insert_1,'Label'); |
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| 369 | update_file(hObject, eventdata, handles,fileinput,1) |
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| 370 | |
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| 371 | % -------------------------------------------------------------------- |
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| 372 | function MenuFile_insert_2_Callback(hObject, eventdata, handles) |
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| 373 | fileinput=get(handles.MenuFile_insert_2,'Label'); |
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| 374 | update_file(hObject, eventdata, handles,fileinput,1) |
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| 375 | |
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| 376 | % -------------------------------------------------------------------- |
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| 377 | function MenuFile_insert_3_Callback(hObject, eventdata, handles) |
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| 378 | fileinput=get(handles.MenuFile_insert_3,'Label'); |
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| 379 | update_file(hObject, eventdata, handles,fileinput,1) |
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| 380 | |
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| 381 | % -------------------------------------------------------------------- |
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| 382 | function MenuFile_insert_4_Callback(hObject, eventdata, handles) |
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| 383 | fileinput=get(handles.MenuFile_insert_4,'Label'); |
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| 384 | update_file(hObject, eventdata, handles,fileinput,1) |
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| 385 | |
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| 386 | % -------------------------------------------------------------------- |
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| 387 | function MenuFile_insert_5_Callback(hObject, eventdata, handles) |
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| 388 | fileinput=get(handles.MenuFile_insert_5,'Label'); |
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| 389 | update_file(hObject, eventdata, handles,fileinput,1) |
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| 390 | |
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| 391 | % -------------------------------------------------------------------- |
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| 392 | % refresh the GUI data after introduction of a new file series |
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| 393 | function update_file(hObject, eventdata, handles,fileinput,addtest) |
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| 394 | hseries=get(handles.RootPath,'parent'); |
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| 395 | % refresh input root name, indices, file extension and nomenclature |
---|
| 396 | [RootPath,RootFile,field_count,str2,str_a,str_b,FileExt,NomType,SubDir]=name2display(fileinput); |
---|
| 397 | %check for movie image files |
---|
| 398 | if ~isempty(imformats(FileExt(2:end))) |
---|
| 399 | imainfo=imfinfo(fileinput); |
---|
| 400 | if length(imainfo) >1 %case of image with multiple frames |
---|
| 401 | NomType='*'; |
---|
| 402 | [RootPath,RootFile]=fileparts(fileinput); |
---|
| 403 | end |
---|
| 404 | end |
---|
| 405 | NcType='none';%default |
---|
| 406 | if isequal(FileExt,'.nc') |
---|
| 407 | Data=nc2struct(fileinput,[]); |
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| 408 | if isfield(Data,'absolut_time_T0') |
---|
| 409 | NcType='civx'; % test for civx velocity fields |
---|
| 410 | end |
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| 411 | end |
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| 412 | |
---|
| 413 | set(handles.RootPath,'Value',1) |
---|
| 414 | set(handles.SubDir,'Value',1) |
---|
| 415 | set(handles.RootFile,'Value',1) |
---|
| 416 | set(handles.NomType,'Value',1) |
---|
| 417 | set(handles.FileExt,'Value',1) |
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| 418 | set(handles.nb_field,'Value',1) |
---|
| 419 | set(handles.nb_field2,'Value',1) |
---|
| 420 | if addtest |
---|
| 421 | SeriesData=get(hseries,'UserData'); |
---|
| 422 | SeriesData.displ_num=[0 0 0 0;SeriesData.displ_num]; |
---|
| 423 | SeriesData.CurrentInputFile_1=SeriesData.CurrentInputFile; |
---|
| 424 | RootPathCell=[{RootPath}; get(handles.RootPath,'String')] ; |
---|
| 425 | SubDirCell=[{SubDir}; get(handles.SubDir,'String')]; |
---|
| 426 | RootFileCell=[{RootFile}; get(handles.RootFile,'String')]; |
---|
| 427 | NomTypeCell=[{NomType}; SeriesData.NomType]; |
---|
| 428 | FileExtCell=[{FileExt}; get(handles.FileExt,'String')]; |
---|
| 429 | NcTypeCell=[{NcType};SeriesData.NcType]; |
---|
| 430 | set(handles.NomType,'String',[{};get(handles.NomType,'String')]) |
---|
| 431 | else |
---|
| 432 | SeriesData=[];%re-initialisation |
---|
| 433 | SeriesData.displ_num=[0 0 0 0]; |
---|
| 434 | RootPathCell={RootPath}; |
---|
| 435 | SubDirCell={SubDir}; |
---|
| 436 | RootFileCell={RootFile}; |
---|
| 437 | NomTypeCell={NomType}; |
---|
| 438 | FileExtCell={FileExt}; |
---|
| 439 | NcTypeCell={NcType}; |
---|
| 440 | end |
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| 441 | |
---|
| 442 | SeriesData.NomType=NomTypeCell; |
---|
| 443 | SeriesData.NcType=NcTypeCell; |
---|
| 444 | SeriesData.CurrentInputFile=fileinput; |
---|
| 445 | set(handles.RootPath,'String',RootPathCell); |
---|
| 446 | set(handles.SubDir,'String',SubDirCell); |
---|
| 447 | set(handles.RootFile,'String',RootFileCell); |
---|
| 448 | set(handles.NomType,'String',NomTypeCell); |
---|
| 449 | set(handles.FileExt,'String',FileExtCell); |
---|
| 450 | |
---|
| 451 | %determine field indices |
---|
| 452 | ref_i=1; %default ref_i is a reference frame index used to find existing pairs from PIV |
---|
| 453 | if ~isempty(str2num(field_count)) |
---|
| 454 | ref_i=str2num(field_count); |
---|
| 455 | if ~isempty(str2num(str2)) |
---|
| 456 | ref_i=floor((ref_i+str2num(str2))/2);% reference image number corresponding to the file |
---|
| 457 | SeriesData.browse_Di=str2num(str2)-str2num(field_count); |
---|
| 458 | end |
---|
| 459 | end |
---|
| 460 | set(handles.ref_i,'String',num2str(ref_i)); |
---|
| 461 | set(handles.first_i,'String',num2str(ref_i)); |
---|
| 462 | set(handles.last_i,'String',num2str(ref_i)); |
---|
| 463 | ref_j=1; %default ref_j is a reference frame index used to find existing pairs from PIV |
---|
| 464 | if ~isempty(str2num(str_a)) |
---|
| 465 | ref_j=str2num(str_a); |
---|
| 466 | if ~isempty(str2num(str_b)) |
---|
| 467 | ref_j=floor((str2num(str_a)+str2num(str_b))/2); |
---|
| 468 | SeriesData.browse_Dj=str2num(str_b)-str2num(str_a); |
---|
| 469 | end |
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| 470 | end |
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| 471 | set(handles.ref_j,'String',num2str(ref_j)); |
---|
| 472 | set(handles.first_j,'String',num2str(ref_j)) |
---|
| 473 | set(handles.last_j,'String',num2str(ref_j)); |
---|
| 474 | %set(hseries,'UserData',SeriesData); |
---|
| 475 | |
---|
| 476 | %enable other menus and uicontrols |
---|
| 477 | set(handles.MenuOpen_insert,'Enable','on') |
---|
| 478 | set(handles.MenuFile_insert_1,'Enable','on') |
---|
| 479 | set(handles.MenuFile_insert_2,'Enable','on') |
---|
| 480 | set(handles.MenuFile_insert_3,'Enable','on') |
---|
| 481 | set(handles.MenuFile_insert_4,'Enable','on') |
---|
| 482 | set(handles.MenuFile_insert_5,'Enable','on') |
---|
| 483 | set(handles.RUN, 'Enable','On') |
---|
| 484 | set(handles.RUN,'BackgroundColor',[1 0 0])% set RUN button to red |
---|
| 485 | set(handles.RootPath,'BackgroundColor',[1 1 0]) % set RootPath edit box to yellow |
---|
| 486 | drawnow |
---|
| 487 | |
---|
| 488 | % hseries=get(handles.RootFile,'parent'); |
---|
| 489 | % SeriesData=get(hseries,'UserData');%read information set by the browser |
---|
| 490 | % ext_ima_read=[]; |
---|
| 491 | % field_count=1;%default |
---|
| 492 | % pxcmx=1; |
---|
| 493 | % pxcmy=1; |
---|
| 494 | TimeUnit=''; %default |
---|
| 495 | % CoordUnit='';%default |
---|
| 496 | time=[];%default |
---|
| 497 | GeometryCalib=[];%default |
---|
| 498 | nb_field=[];%default |
---|
| 499 | nb_field2=[];%default |
---|
| 500 | % Heading=[]; |
---|
| 501 | % [PD,Device]=fileparts(RootPathCell{1}); |
---|
| 502 | SeriesData.PathCampaign=get(handles.PathCampaign,'String'); |
---|
| 503 | |
---|
| 504 | % read timing and total frame number from the current file (movie files) !! may be overrid by xml file |
---|
| 505 | %icell=length(RootPathCell); |
---|
| 506 | FileBase=fullfile(RootPath,RootFile); |
---|
| 507 | |
---|
| 508 | % nb_field{icell,1}='?';%default |
---|
| 509 | % nb_field2{icell,1}='?';%default |
---|
| 510 | testima=0; %test for image input |
---|
| 511 | if isequal(lower(FileExt),'.avi') %.avi file |
---|
| 512 | testima=1; |
---|
| 513 | info=aviinfo([FileBase FileExt]); |
---|
| 514 | time=[0:1/info.FramesPerSecond:(info.NumFrames-1)/info.FramesPerSecond]'; |
---|
| 515 | nb_field=info.NumFrames; |
---|
| 516 | nb_field2=1; |
---|
| 517 | elseif ~isempty(imformats(FileExt(2:end))) |
---|
| 518 | testima=1; |
---|
| 519 | if isequal(NomType,'*')% multi-frame image |
---|
| 520 | imainfo=imfinfo([FileBase FileExt]); |
---|
| 521 | if length(imainfo) >1 %case of image with multiple frames |
---|
| 522 | nb_field=length(imainfo); |
---|
| 523 | nb_field2=1; |
---|
| 524 | end |
---|
| 525 | end |
---|
| 526 | elseif isequal(FileExt,'.vol') |
---|
| 527 | testima=1; |
---|
| 528 | end |
---|
| 529 | |
---|
| 530 | % enable field and veltype menus |
---|
| 531 | testfield=isequal(get(handles.FieldMenu,'enable'),'on'); |
---|
| 532 | testfield_1=isequal(get(handles.FieldMenu_1,'enable'),'on'); |
---|
| 533 | testveltype=isequal(get(handles.VelTypeMenu,'enable'),'on'); |
---|
| 534 | testveltype_1=isequal(get(handles.VelTypeMenu_1,'enable'),'on'); |
---|
| 535 | testtransform=isequal(get(handles.CoordType,'Enable'),'on'); |
---|
| 536 | testnc=0; |
---|
| 537 | testnc_1=0; |
---|
| 538 | testcivx=0; |
---|
| 539 | testcivx_1=0; |
---|
| 540 | if length(FileExtCell)==1 || length(FileExtCell)>2 |
---|
| 541 | for iview=1:length(FileExtCell) |
---|
| 542 | if isequal(FileExtCell{iview},'.nc') |
---|
| 543 | testnc=1; |
---|
| 544 | end |
---|
| 545 | if isequal(NcTypeCell{iview},'civx') |
---|
| 546 | testcivx=1; |
---|
| 547 | end |
---|
| 548 | end |
---|
| 549 | elseif length(FileExtCell)==2 |
---|
| 550 | testnc=isequal(FileExtCell{1},'.nc'); |
---|
| 551 | testnc_1=isequal(FileExtCell{2},'.nc'); |
---|
| 552 | testcivx=isequal(NcTypeCell{1},'civx'); |
---|
| 553 | testcivx_1=isequal(NcTypeCell{2},'civx'); |
---|
| 554 | end |
---|
| 555 | if testfield && testnc |
---|
| 556 | view_FieldMenu(handles,'on') |
---|
| 557 | if testcivx |
---|
| 558 | menustr=get(handles.FieldMenu,'String'); |
---|
| 559 | if isequal(menustr,{'get_field...'}) |
---|
| 560 | set(handles.FieldMenu,'String',{'get_field...';'velocity';'vort';'div';'more...'}) |
---|
| 561 | end |
---|
| 562 | else |
---|
| 563 | set(handles.FieldMenu,'Value',1) |
---|
| 564 | set(handles.FieldMenu,'String',{'get_field...'}) |
---|
| 565 | end |
---|
| 566 | else |
---|
| 567 | view_FieldMenu(handles,'off') |
---|
| 568 | end |
---|
| 569 | if testfield_1 && testnc_1 |
---|
| 570 | view_FieldMenu_1(handles,'on') |
---|
| 571 | if testcivx_1 |
---|
| 572 | menustr=get(handles.FieldMenu_1,'String'); |
---|
| 573 | if isequal(menustr,{'get_field...'}) |
---|
| 574 | set(handles.FieldMenu_1,'String',{'get_field...';'velocity';'vort';'div';'more...'}) |
---|
| 575 | end |
---|
| 576 | else |
---|
| 577 | set(handles.FieldMenu_1,'Value',1) |
---|
| 578 | set(handles.FieldMenu_1,'String',{'get_field...'}) |
---|
| 579 | end |
---|
| 580 | else |
---|
| 581 | view_FieldMenu_1(handles,'off') |
---|
| 582 | end |
---|
| 583 | if testveltype && testcivx |
---|
| 584 | set(handles.VelTypeMenu,'Visible','on') |
---|
| 585 | set(handles.VelType_text,'Visible','on'); |
---|
| 586 | else |
---|
| 587 | set(handles.VelTypeMenu,'Visible','off') |
---|
| 588 | set(handles.VelType_text,'Visible','off'); |
---|
| 589 | end |
---|
| 590 | if testveltype_1 && testcivx_1 |
---|
| 591 | set(handles.VelTypeMenu_1,'Visible','on') |
---|
| 592 | set(handles.VelType_text_1,'Visible','on'); |
---|
| 593 | else |
---|
| 594 | set(handles.VelTypeMenu_1,'Visible','off') |
---|
| 595 | set(handles.VelType_text_1,'Visible','off'); |
---|
| 596 | end |
---|
| 597 | if testtransform && (testcivx || testima) |
---|
| 598 | view_TRANSFORM(handles,'on') |
---|
| 599 | else |
---|
| 600 | view_TRANSFORM(handles,'off') |
---|
| 601 | end |
---|
| 602 | if ~isequal(FileExt,'.nc') && ~isequal(FileExt,'.cdf') && ~testima |
---|
| 603 | msgbox_uvmat('ERROR',['invalid input file extension ' FileExt]) |
---|
| 604 | return |
---|
| 605 | end |
---|
| 606 | |
---|
| 607 | %%%%%%%% read image documentation file if found%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 608 | %look for the file existence |
---|
| 609 | ext_imadoc=''; |
---|
| 610 | if isequal(FileExt,'.xml')||isequal(FileExt,'.civ') |
---|
| 611 | ext_imadoc=FileExt; |
---|
| 612 | elseif exist([FileBase '.xml'],'file') |
---|
| 613 | ext_imadoc='.xml'; |
---|
| 614 | elseif exist([FileBase '.civ'],'file') |
---|
| 615 | ext_imadoc='.civ'; |
---|
| 616 | end |
---|
| 617 | %read the ImaDoc file |
---|
| 618 | % mode=''; %default |
---|
| 619 | % testheading=0; |
---|
| 620 | XmlData=[]; |
---|
| 621 | NbSlice_calib={}; |
---|
| 622 | if isequal(ext_imadoc,'.xml') |
---|
| 623 | [XmlData,warntext]=imadoc2struct([FileBase '.xml']); |
---|
| 624 | if isfield(XmlData,'Heading') && isfield(XmlData.Heading,'ImageName') |
---|
| 625 | [PP,FF,ext_ima_read]=fileparts(XmlData.Heading.ImageName); |
---|
| 626 | end |
---|
| 627 | if isfield(XmlData,'Time') |
---|
| 628 | time=XmlData.Time; |
---|
| 629 | end |
---|
| 630 | if isfield(XmlData,'Camera') |
---|
| 631 | if isfield(XmlData.Camera,'NbSlice')&& ~isempty(XmlData.Camera.NbSlice) |
---|
| 632 | NbSlice_calib{iview}=XmlData.Camera.NbSlice;% Nbre of slices for Zindex in phys transform |
---|
| 633 | if ~isequal(NbSlice_calib{iview},NbSlice_calib{1}) |
---|
| 634 | msgbox_uvmat('WARNING','inconsistent number of Z indices for the two field series'); |
---|
| 635 | end |
---|
| 636 | end |
---|
| 637 | if isfield(XmlData.Camera,'TimeUnit')&& ~isempty(XmlData.Camera.TimeUnit) |
---|
| 638 | TimeUnit=XmlData.Camera.TimeUnit; |
---|
| 639 | end |
---|
| 640 | end |
---|
| 641 | if ~isempty(warntext) |
---|
| 642 | msgbox_uvmat('WARNING',warntext) |
---|
| 643 | end |
---|
| 644 | elseif isequal(ext_imadoc,'.civ') |
---|
| 645 | [error,XmlData.Time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([FileBase '.civ']); |
---|
| 646 | time=XmlData.Time; |
---|
| 647 | size(time) |
---|
| 648 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0]; |
---|
| 649 | GeometryCalib.Tx=0; |
---|
| 650 | GeometryCalib.Ty=0; |
---|
| 651 | GeometryCalib.Tz=1; |
---|
| 652 | GeometryCalib.dpx=1; |
---|
| 653 | GeometryCalib.dpy=1; |
---|
| 654 | GeometryCalib.sx=1; |
---|
| 655 | GeometryCalib.Cx=0; |
---|
| 656 | GeometryCalib.Cy=0; |
---|
| 657 | GeometryCalib.f=1; |
---|
| 658 | GeometryCalib.kappa1=0; |
---|
| 659 | GeometryCalib.CoordUnit='cm'; |
---|
| 660 | XmlData.GeometryCalib=GeometryCalib; |
---|
| 661 | if error==2, warntext=['no file ' FileBase '.civ']; |
---|
| 662 | elseif error==1, warntext='inconsistent number of fields in the .civ file'; |
---|
| 663 | end |
---|
| 664 | % set(handles.npx,'String',num2str(npx));%fills nbre of pixels x box |
---|
| 665 | % set(handles.npy,'String',num2str(npy));%fills nbre of pixels y box |
---|
| 666 | % set(handles.pxcm,'String',num2str(pxcmx));%fills scale x (pixel/cm) box |
---|
| 667 | % set(handles.pycm,'String',num2str(pxcmy));%fills scale y (pixel/cm) box |
---|
| 668 | % set(handles.pxcm,'Visible','on');%fills scale x (pixel/cm) box |
---|
| 669 | % set(handles.pycm,'Visible','on');%fills scale y (pixel/cm) box |
---|
| 670 | % set(handles.view_xml,'Visible','on') |
---|
| 671 | % set(handles.view_xml,'String','view .civ') |
---|
| 672 | end |
---|
| 673 | if addtest |
---|
| 674 | SeriesData.Time=[{time} SeriesData.Time]; |
---|
| 675 | else |
---|
| 676 | SeriesData.Time={time}; |
---|
| 677 | end |
---|
| 678 | |
---|
| 679 | if ~isempty(time) |
---|
| 680 | siztime=size(time); |
---|
| 681 | nb_field=siztime(1); |
---|
| 682 | nb_field2=siztime(2); |
---|
| 683 | end |
---|
| 684 | set(handles.TimeUnit,'String',TimeUnit) |
---|
| 685 | if isempty(nb_field) |
---|
| 686 | nb_field_str='?'; |
---|
| 687 | nb_field_str2='?'; |
---|
| 688 | else |
---|
| 689 | nb_field_str=num2str(nb_field); |
---|
| 690 | nb_field_str2=num2str(nb_field2); |
---|
| 691 | end |
---|
| 692 | if addtest |
---|
| 693 | nb_field_cell=[{nb_field_str} ;get(handles.nb_field,'String')]; |
---|
| 694 | nb_field2_cell=[{nb_field_str2} ;get(handles.nb_field2,'String')]; |
---|
| 695 | else |
---|
| 696 | nb_field_cell={nb_field_str}; |
---|
| 697 | nb_field2_cell={nb_field_str2}; |
---|
| 698 | end |
---|
| 699 | set(handles.nb_field,'String',nb_field_cell); |
---|
| 700 | set(handles.nb_field2,'String',nb_field2_cell); |
---|
| 701 | set(hseries,'UserData',SeriesData); |
---|
| 702 | |
---|
| 703 | %number of slices |
---|
| 704 | if isfield(XmlData,'GeometryCalib') && isfield(XmlData.GeometryCalib,'SliceCoord') |
---|
| 705 | siz=size(XmlData.GeometryCalib.SliceCoord); |
---|
| 706 | if siz(1)>1 |
---|
| 707 | NbSlice=siz(1); |
---|
| 708 | else |
---|
| 709 | NbSlice=1; |
---|
| 710 | end |
---|
| 711 | set(handles.NbSlice,'String',num2str(NbSlice)) |
---|
| 712 | end |
---|
| 713 | |
---|
| 714 | % set menus of index pairs |
---|
| 715 | NomType_Callback(hObject, eventdata, handles) |
---|
| 716 | |
---|
| 717 | dir_perso=prefdir; |
---|
| 718 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 719 | % save(profil_perso, 'FileBase'); %store the root name for future opening of uvmat |
---|
| 720 | if exist(profil_perso,'file') |
---|
| 721 | save (profil_perso,'RootPath','SubDir','RootFile','NomType', '-append'); %store the root name for future opening of uvmat |
---|
| 722 | else |
---|
| 723 | txt=ver; |
---|
| 724 | Release=txt(1).Release; |
---|
| 725 | relnumb=str2num(Release(3:4)); |
---|
| 726 | if relnumb >= 14 |
---|
| 727 | save (profil_perso,'RootPath','SubDir','RootFile','NomType','-V6') %store the root name for future opening of uvmat |
---|
| 728 | else |
---|
| 729 | save(profil_perso,'RootPath','SubDir','RootFile','NomType') |
---|
| 730 | end |
---|
| 731 | end |
---|
| 732 | set(handles.RootPath,'BackgroundColor',[1 1 1]) |
---|
| 733 | set(handles.PathCampaign,'String',SeriesData.PathCampaign) |
---|
| 734 | last_j_Callback(hObject, eventdata, handles) |
---|
| 735 | last_i_Callback(hObject, eventdata, handles) |
---|
| 736 | |
---|
| 737 | %------------------------------------------------------------ |
---|
| 738 | function RootPath_Callback(hObject, eventdata, handles) |
---|
| 739 | Val=get(handles.RootPath,'Value'); |
---|
| 740 | synchronise_view(handles,Val) |
---|
| 741 | NomType_Callback(hObject, eventdata, handles) |
---|
| 742 | %------------------------------------------------------------ |
---|
| 743 | |
---|
| 744 | function synchronise_view(handles,Val) |
---|
| 745 | set(handles.RootPath,'Value',Val) |
---|
| 746 | set(handles.SubDir,'Value',Val) |
---|
| 747 | set(handles.RootFile,'Value',Val) |
---|
| 748 | set(handles.NomType,'Value',Val) |
---|
| 749 | set(handles.FileExt,'Value',Val) |
---|
| 750 | set(handles.nb_field,'Value',Val) |
---|
| 751 | set(handles.nb_field2,'Value',Val) |
---|
| 752 | set(handles.time_first,'Value',Val) |
---|
| 753 | set(handles.time_last,'Value',Val) |
---|
| 754 | |
---|
| 755 | |
---|
| 756 | %--------------------------------------------------------- |
---|
| 757 | % Executes on carriage return on the subdir civ1 edit window |
---|
| 758 | %-------------------------------------------------------- |
---|
| 759 | function SubDir_Callback(hObject, eventdata, handles) |
---|
| 760 | |
---|
| 761 | Val=get(handles.SubDir,'Value'); |
---|
| 762 | synchronise_view(handles,Val) |
---|
| 763 | NomType_Callback(hObject, eventdata, handles) |
---|
| 764 | |
---|
| 765 | %-------------------------------------------------------------- |
---|
| 766 | %function activated when a new filebase (image series) is introduced |
---|
| 767 | %------------------------------------------------------------ |
---|
| 768 | function RootFile_Callback(hObject, eventdata, handles) |
---|
| 769 | Val=get(handles.RootFile,'Value'); |
---|
| 770 | synchronise_view(handles,Val) |
---|
| 771 | NomType_Callback(hObject, eventdata, handles) |
---|
| 772 | |
---|
| 773 | %-------------------------------------------------------------- |
---|
| 774 | %function activated when a new filebase (image series) is introduced |
---|
| 775 | %------------------------------------------------------------ |
---|
| 776 | function FileExt_Callback(hObject, eventdata, handles) |
---|
| 777 | Val=get(handles.FileExt,'Value'); |
---|
| 778 | synchronise_view(handles,Val) |
---|
| 779 | |
---|
| 780 | %-------------------------------------------------------------- |
---|
| 781 | %function activated when a new filebase (image series) is introduced |
---|
| 782 | %------------------------------------------------------------ |
---|
| 783 | function nb_field_Callback(hObject, eventdata, handles) |
---|
| 784 | Val=get(handles.nb_field,'Value'); |
---|
| 785 | synchronise_view(handles,Val) |
---|
| 786 | |
---|
| 787 | %-------------------------------------------------------------- |
---|
| 788 | %function activated when a new filebase (image series) is introduced |
---|
| 789 | %------------------------------------------------------------ |
---|
| 790 | function nb_field2_Callback(hObject, eventdata, handles) |
---|
| 791 | Val=get(handles.nb_field2,'Value'); |
---|
| 792 | synchronise_view(handles,Val) |
---|
| 793 | |
---|
| 794 | %-------------------------------------------------------------- |
---|
| 795 | %function activated when a new filebase (image series) is introduced |
---|
| 796 | %------------------------------------------------------------ |
---|
| 797 | function time_first_Callback(hObject, eventdata, handles) |
---|
| 798 | Val=get(handles.time_first,'Value'); |
---|
| 799 | synchronise_view(handles,Val) |
---|
| 800 | |
---|
| 801 | %-------------------------------------------------------------- |
---|
| 802 | %function activated when a new filebase (image series) is introduced |
---|
| 803 | %------------------------------------------------------------ |
---|
| 804 | function time_last_Callback(hObject, eventdata, handles) |
---|
| 805 | Val=get(handles.time_last,'Value'); |
---|
| 806 | synchronise_view(handles,Val) |
---|
| 807 | |
---|
| 808 | %-------------------------------------------------------------- |
---|
| 809 | %function activated by NomType |
---|
| 810 | %------------------------------------------------------------ |
---|
| 811 | NomType_Callback(hObject, eventdata, handles) |
---|
| 812 | |
---|
| 813 | function NomType_Callback(hObject, eventdata, handles) |
---|
| 814 | hseries=get(handles.ProjObject,'Parent'); |
---|
| 815 | SeriesData=get(hseries,'UserData'); |
---|
| 816 | if isfield(SeriesData,'NomType') |
---|
| 817 | NomTypeCell=SeriesData.NomType; |
---|
| 818 | else |
---|
| 819 | NomTypeCell={}; |
---|
| 820 | end |
---|
| 821 | nbfield2_cell=get(handles.nb_field2,'String'); |
---|
| 822 | val=get(handles.nb_field2,'Value'); |
---|
| 823 | if iscell(nbfield2_cell) |
---|
| 824 | nbfield2=str2num(nbfield2_cell{val}); |
---|
| 825 | else |
---|
| 826 | nbfield2=str2num(nbfield2_cell); |
---|
| 827 | end |
---|
| 828 | nbfield_cell=get(handles.nb_field,'String'); |
---|
| 829 | if iscell(nbfield_cell) |
---|
| 830 | nbfield=str2num(nbfield_cell{val}); |
---|
| 831 | else |
---|
| 832 | nbfield=str2num(nbfield_cell); |
---|
| 833 | end |
---|
| 834 | |
---|
| 835 | set(handles.mode,'Visible','off') % do not show index pairs by default |
---|
| 836 | set(handles.list_pair_civ,'Visible','off') |
---|
| 837 | set(handles.ref_i,'Visible','off') |
---|
| 838 | set(handles.ref_i_text,'Visible','off') |
---|
| 839 | testpair=0; |
---|
| 840 | state_j='off'; |
---|
| 841 | %set the menus of image pairs and default selection for series |
---|
| 842 | %list pairs if relevant |
---|
| 843 | Val=get(handles.NomType,'Value'); |
---|
| 844 | synchronise_view(handles,Val) |
---|
| 845 | if ~isempty(NomTypeCell) |
---|
| 846 | NomType=NomTypeCell{Val}; |
---|
| 847 | switch NomType |
---|
| 848 | case {'_i1-i2_j', '_i1-i2'} |
---|
| 849 | set(handles.mode,'String',{'series(Di)'}) |
---|
| 850 | set(handles.mode,'Value',1); |
---|
| 851 | set(handles.mode,'Visible','on') |
---|
| 852 | testpair=1; |
---|
| 853 | case {'#_ab'} |
---|
| 854 | set(handles.mode,'String',{'bursts'}) |
---|
| 855 | set(handles.mode,'Value',1); |
---|
| 856 | testpair=1; |
---|
| 857 | case '_i_j1-j2' |
---|
| 858 | set(handles.mode,'String',{'bursts';'series(Dj)'})%multiple choice |
---|
| 859 | if ~isempty(nbfield) && ~isempty(nbfield2) && ((nbfield2>10) || (nbfield==1)) |
---|
| 860 | set(handles.mode,'Value',2); |
---|
| 861 | else |
---|
| 862 | set(handles.mode,'Value',1);% advice 'bursts' for small bursts |
---|
| 863 | end |
---|
| 864 | set(handles.mode,'Visible','on') |
---|
| 865 | testpair=1; |
---|
| 866 | end |
---|
| 867 | switch NomType |
---|
| 868 | case {'_i_j','_i_j1-j2','_i1-i2_j','#_ab'},% two navigation indices |
---|
| 869 | state_j='on'; |
---|
| 870 | end |
---|
| 871 | end |
---|
| 872 | if testpair |
---|
| 873 | mode_Callback(hObject, eventdata, handles) |
---|
| 874 | else |
---|
| 875 | set(handles.NomType,'String',NomTypeCell) |
---|
| 876 | end |
---|
| 877 | set(handles.first_j,'Visible',state_j) |
---|
| 878 | set(handles.incr_j,'Visible',state_j) |
---|
| 879 | set(handles.last_j,'Visible',state_j) |
---|
| 880 | set(handles.nb_field2,'Visible',state_j) |
---|
| 881 | |
---|
| 882 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%???????????? |
---|
| 883 | % --- Executes on button press in mode. |
---|
| 884 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 885 | function mode_Callback(hObject, eventdata, handles) |
---|
| 886 | hseries=get(handles.mode,'parent'); |
---|
| 887 | SeriesData=get(hseries,'UserData'); |
---|
| 888 | mode_list=get(handles.mode,'String'); |
---|
| 889 | mode_value=get(handles.mode,'Value'); |
---|
| 890 | mode=mode_list{mode_value}; |
---|
| 891 | NomType=[]; |
---|
| 892 | test_find_pair=0; |
---|
| 893 | if isfield(SeriesData,'NomType') |
---|
| 894 | NomTypeCell=SeriesData.NomType; |
---|
| 895 | Val=get(handles.NomType,'Value'); |
---|
| 896 | NomType=NomTypeCell{Val}; |
---|
| 897 | test_find_pair=isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j')|| isequal(NomType,'_i1-i2')|| isequal(NomType,'#_ab'); |
---|
| 898 | end |
---|
| 899 | % displ_num=[];%default |
---|
| 900 | % first_i=str2num(get(handles.first_i,'String')); |
---|
| 901 | % last_i=str2num(get(handles.last_i,'String')); |
---|
| 902 | time=[]; |
---|
| 903 | if isfield(SeriesData,'Time') |
---|
| 904 | time=SeriesData.Time{1}; %get the set of times |
---|
| 905 | end |
---|
| 906 | siztime=size(time); |
---|
| 907 | nbfield=siztime(1); |
---|
| 908 | nbfield2=siztime(2); |
---|
| 909 | indchosen=1; %%first pair selected by default |
---|
| 910 | if isequal(mode,'bursts') |
---|
| 911 | enable_i(handles,'On') |
---|
| 912 | enable_j(handles,'Off') |
---|
| 913 | elseif isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j') |
---|
| 914 | enable_i(handles,'On') |
---|
| 915 | enable_j(handles,'On') |
---|
| 916 | else |
---|
| 917 | enable_i(handles,'On') |
---|
| 918 | enable_j(handles,'Off') |
---|
| 919 | end |
---|
| 920 | |
---|
| 921 | |
---|
| 922 | % elseif isequal(mode,'series(Dj)') |
---|
| 923 | % enable_j(handles,'On') |
---|
| 924 | % if nbfield==1 |
---|
| 925 | % enable_i(handles,'Off') |
---|
| 926 | % else |
---|
| 927 | % enable_i(handles,'On') |
---|
| 928 | % end |
---|
| 929 | % elseif isequal(mode,'series(Di)') |
---|
| 930 | % if nbfield2 > 1 |
---|
| 931 | % enable_j(handles,'On') |
---|
| 932 | % else |
---|
| 933 | % enable_j(handles,'Off') |
---|
| 934 | % end |
---|
| 935 | % end |
---|
| 936 | set(handles.list_pair_civ,'Value',indchosen);%set the default choice of image pairs for civ1 |
---|
| 937 | % SetSeries.displ_num=displ_num; |
---|
| 938 | set(hseries,'UserData',SeriesData) |
---|
| 939 | |
---|
| 940 | %list pairs if relevant |
---|
| 941 | if test_find_pair |
---|
| 942 | find_netcpair_civ(hObject, eventdata, handles,Val) |
---|
| 943 | end |
---|
| 944 | |
---|
| 945 | %------------------------------------- |
---|
| 946 | function enable_i(handles,state) |
---|
| 947 | set(handles.i_txt,'Visible',state) |
---|
| 948 | set(handles.first_i,'Visible',state) |
---|
| 949 | set(handles.last_i,'Visible',state) |
---|
| 950 | set(handles.incr_i,'Visible',state) |
---|
| 951 | set(handles.nb_field,'Visible',state) |
---|
| 952 | set(handles.ref_i,'Visible',state) |
---|
| 953 | set(handles.ref_i_text,'Visible',state) |
---|
| 954 | |
---|
| 955 | %----------------------------------- |
---|
| 956 | function enable_j(handles,state) |
---|
| 957 | set(handles.j_txt,'Visible',state) |
---|
| 958 | set(handles.first_j,'Visible',state) |
---|
| 959 | set(handles.last_j,'Visible',state) |
---|
| 960 | set(handles.incr_j,'Visible',state) |
---|
| 961 | set(handles.nb_field2,'Visible',state) |
---|
| 962 | set(handles.ref_j,'Visible',state) |
---|
| 963 | set(handles.ref_j_text,'Visible',state) |
---|
| 964 | |
---|
| 965 | %----------------------------------- |
---|
| 966 | function view_FieldMenu(handles,state) |
---|
| 967 | set(handles.FieldMenu,'Visible',state) |
---|
| 968 | set(handles.Field_text,'Visible',state) |
---|
| 969 | set(handles.Field_frame,'Visible',state) |
---|
| 970 | |
---|
| 971 | %----------------------------------- |
---|
| 972 | function view_FieldMenu_1(handles,state) |
---|
| 973 | set(handles.FieldMenu_1,'Visible',state) |
---|
| 974 | set(handles.Field_text_1,'Visible',state) |
---|
| 975 | |
---|
| 976 | %----------------------------------- |
---|
| 977 | function view_TRANSFORM(handles,state) |
---|
| 978 | set(handles.TRANSFORM_frame,'Visible',state) |
---|
| 979 | set(handles.CoordType,'Visible',state); |
---|
| 980 | set(handles.TRANSFORM_title,'Visible',state) |
---|
| 981 | |
---|
| 982 | %-------------------------------------------------------------- |
---|
| 983 | % determine the menu for civ1 pairs depending on existing netcdf file at the middle of |
---|
| 984 | % the field series set by first_i, incr, last_i |
---|
| 985 | %---------------------------------------------------------------- |
---|
| 986 | function find_netcpair_civ(hObject, eventdata, handles,Val) |
---|
| 987 | hseries=get(handles.list_pair_civ,'parent'); |
---|
| 988 | SeriesData=get(hseries,'UserData'); |
---|
| 989 | % NomTypeCell=get(handles.NomType,'String'); |
---|
| 990 | NomTypeCell=SeriesData.NomType; |
---|
| 991 | NomType=NomTypeCell{Val}; |
---|
| 992 | set(handles.list_pair_civ,'Visible','on') |
---|
| 993 | %nomenclature types |
---|
| 994 | RootPathCell=get(handles.RootPath,'String'); |
---|
| 995 | filepath=RootPathCell{Val}; |
---|
| 996 | RootFileCell=get(handles.RootFile,'String'); |
---|
| 997 | filename=RootFileCell{Val}; |
---|
| 998 | filebase=fullfile(filepath,filename); |
---|
| 999 | SubDirCell=get(handles.SubDir,'String'); |
---|
| 1000 | subdir=SubDirCell{Val}; |
---|
| 1001 | if ~exist(fullfile(filepath,subdir),'dir') |
---|
| 1002 | msgbox_uvmat('ERROR',['no civ file available: subdirectory ' subdir ' does not exist']) |
---|
| 1003 | set(handles.list_pair_civ,'String',{''}); |
---|
| 1004 | return |
---|
| 1005 | end |
---|
| 1006 | mode_list=get(handles.mode,'String'); |
---|
| 1007 | mode_value=get(handles.mode,'Value'); |
---|
| 1008 | mode=mode_list{mode_value}; |
---|
| 1009 | |
---|
| 1010 | %reads image numbers from the interface |
---|
| 1011 | ref_i=str2num(get(handles.ref_i,'String')); |
---|
| 1012 | ref_j=str2num(get(handles.ref_j,'String')); |
---|
| 1013 | % time=[]; |
---|
| 1014 | % ref_time=[]; |
---|
| 1015 | ref_time=0; |
---|
| 1016 | if isfield(SeriesData,'Time')&~isempty(SeriesData.Time{Val})&~isequal(SeriesData.Time{Val},0) |
---|
| 1017 | time=SeriesData.Time{Val}; %get the set of times |
---|
| 1018 | siztime=size(time); |
---|
| 1019 | nbfield=siztime(1); |
---|
| 1020 | nbfield2=siztime(2); |
---|
| 1021 | % test_imadoc=1; |
---|
| 1022 | else |
---|
| 1023 | % test_imadoc=0;%no image documentation file |
---|
| 1024 | nbfield=50; |
---|
| 1025 | nbfield2=50;%default max number of pairs |
---|
| 1026 | end |
---|
| 1027 | %look for existing processed pairs involving the field at the middle of the series if civ1 will not |
---|
| 1028 | % be performed, while the result is needed for next steps. |
---|
| 1029 | displ_pair={''}; |
---|
| 1030 | displ_num=[]; |
---|
| 1031 | ind_exist=0; |
---|
| 1032 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
| 1033 | if length(TimeUnit)>=1 |
---|
| 1034 | dtunit=['m' TimeUnit]; |
---|
| 1035 | else |
---|
| 1036 | dtunit='e-03'; |
---|
| 1037 | end |
---|
| 1038 | if isequal(mode,'series(Di)') |
---|
| 1039 | for index=1:min(nbfield-1,50) |
---|
| 1040 | filename=name_generator(filebase,ref_i-floor(index/2),ref_j,'.nc',NomType,1,ref_i+ceil(index/2),ref_j,subdir); |
---|
| 1041 | select=(exist(filename,'file')==2); |
---|
| 1042 | if select==1 |
---|
| 1043 | ind_exist=ind_exist+1; |
---|
| 1044 | displ_num(1,ind_exist)=0; |
---|
| 1045 | displ_num(2,ind_exist)=0; |
---|
| 1046 | displ_num(3,ind_exist)=-floor(index/2); |
---|
| 1047 | displ_num(4,ind_exist)=ceil(index/2); |
---|
| 1048 | %[cte_detect,vdt,cte_read]=read_netcdf(filename,{'dt','dt2','absolut_time_T0','absolute_time_TO_2'}); |
---|
| 1049 | [Cte,var_detect,ichoice]=nc2struct(filename,{}); |
---|
| 1050 | if isfield(Cte,'dt2') |
---|
| 1051 | dt=Cte.dt2; |
---|
| 1052 | elseif isfield(Cte,'dt') |
---|
| 1053 | dt=Cte.dt; |
---|
| 1054 | end |
---|
| 1055 | if isfield(Cte,'absolut_time_TO_2') |
---|
| 1056 | ref_time(ind_exist)=Cte.absolut_time_TO_2;%civ2 data used in priority |
---|
| 1057 | elseif isfield(Cte,'absolut_time_TO') |
---|
| 1058 | ref_time(ind_exist)=Cte.absolut_time_TO;%civ2 data used in priorit |
---|
| 1059 | elseif isfield(Cte,'Time') |
---|
| 1060 | ref_time(ind_exist)=Cte.Time; |
---|
| 1061 | end |
---|
| 1062 | displ_pair{ind_exist}=['Di= ' num2str(-floor(index/2)) '|' num2str(ceil(index/2)) ' :dt= ' num2str(dt*1000) dtunit]; |
---|
| 1063 | end |
---|
| 1064 | end |
---|
| 1065 | set(handles.list_pair_civ,'String',[displ_pair';{'Di=*|*'}]); |
---|
| 1066 | elseif isequal(mode,'series(Dj)')% series on the j index |
---|
| 1067 | for index=1:min(nbfield2-1,50) |
---|
| 1068 | filename=name_generator(filebase,ref_i,ref_j-floor(index/2),'.nc',NomType,1,ref_i,ref_j+ceil(index/2),subdir); |
---|
| 1069 | select=(exist(filename,'file')==2); |
---|
| 1070 | if select==1 |
---|
| 1071 | ind_exist=ind_exist+1; |
---|
| 1072 | displ_num(1,ind_exist)=-floor(index/2); |
---|
| 1073 | displ_num(2,ind_exist)=ceil(index/2); |
---|
| 1074 | displ_num(3,ind_exist)=0; |
---|
| 1075 | displ_num(4,ind_exist)=0; |
---|
| 1076 | %[cte_detect,vdt,cte_read]=read_netcdf(filename,{'dt','dt2','absolut_time_T0','absolute_time_TO_2'}); |
---|
| 1077 | [Cte,var_detect,ichoice]=nc2struct(nc,{}); |
---|
| 1078 | if isfield(Cte,'dt2') |
---|
| 1079 | dt=Cte.dt2; |
---|
| 1080 | elseif isfield(Cte,'dt') |
---|
| 1081 | dt=Cte.dt; |
---|
| 1082 | end |
---|
| 1083 | if isfield(Cte,'absolut_time_TO_2') |
---|
| 1084 | ref_time(ind_exist)=Cte.absolut_time_TO_2;%civ2 data used in priority |
---|
| 1085 | elseif isfield(Cte,'absolut_time_TO') |
---|
| 1086 | ref_time(ind_exist)=Cte.absolut_time_TO;%civ2 data used in priorit |
---|
| 1087 | elseif isfield(Cte,'Time') |
---|
| 1088 | ref_time(ind_exist)=Cte.Time; |
---|
| 1089 | end |
---|
| 1090 | % if cte_detect(2)==1; |
---|
| 1091 | % dt=cte_read(2); |
---|
| 1092 | % ref_time(ind_exist)=cte_read(4);%civ2 data used in priority |
---|
| 1093 | % else |
---|
| 1094 | % dt=cte_read(1); |
---|
| 1095 | % ref_time(ind_exist)=cte_read(3); |
---|
| 1096 | % end |
---|
| 1097 | displ_pair{ind_exist}=['Dj= ' num2str(-floor(index/2)) '|' num2str(ceil(index/2)) ' :dt= ' num2str(dt*1000) dtunit]; |
---|
| 1098 | end |
---|
| 1099 | end |
---|
| 1100 | set(handles.list_pair_civ,'String',[displ_pair';{'Dj=*|*'}]); |
---|
| 1101 | elseif isequal(mode,'bursts') %case of bursts |
---|
| 1102 | for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'bursts' mode |
---|
| 1103 | for numod_b=(numod_a+1):nbfield2 |
---|
| 1104 | [filename]=name_generator(filebase,ref_i,numod_a,'.nc',NomType,1,ref_i,numod_b,subdir); |
---|
| 1105 | select=(exist(filename,'file')==2); |
---|
| 1106 | if select==1 |
---|
| 1107 | ind_exist=ind_exist+1; |
---|
| 1108 | numlist_a(ind_exist)=numod_a; |
---|
| 1109 | numlist_b(ind_exist)=numod_b; |
---|
| 1110 | Attr=nc2struct(filename,[]); |
---|
| 1111 | isfield(Attr,'absolut_time_T0_2') |
---|
| 1112 | if isfield(Attr,'dt2') |
---|
| 1113 | dt(ind_exist)=Attr.dt2; |
---|
| 1114 | ref_time(ind_exist)=Attr.absolut_time_T0_2; |
---|
| 1115 | elseif isfield(Attr,'dt')& isfield(Attr,'absolut_time_T0') |
---|
| 1116 | dt(ind_exist)=Attr.dt; |
---|
| 1117 | ref_time(ind_exist)=Attr.absolut_time_T0; |
---|
| 1118 | else |
---|
| 1119 | dt(ind_exist)=NaN;%no information on dt |
---|
| 1120 | end |
---|
| 1121 | %determine nom_type_ima for pair display (used in num2stra.m) |
---|
| 1122 | switch NomType |
---|
| 1123 | case {'#ab'} |
---|
| 1124 | nom_type_ima='#a'; |
---|
| 1125 | case {'#AB'} |
---|
| 1126 | nom_type_ima='#A'; |
---|
| 1127 | otherwise |
---|
| 1128 | nom_type_ima='_i_j'; |
---|
| 1129 | end |
---|
| 1130 | displ_pair{ind_exist}=['j= ' num2stra(numod_a,nom_type_ima,2) '-' num2stra(numod_b,nom_type_ima,2) ... |
---|
| 1131 | ' :dt= ' num2str(dt(ind_exist)*1000)]; |
---|
| 1132 | end |
---|
| 1133 | end |
---|
| 1134 | set(handles.list_pair_civ,'String',[displ_pair';{'j=*-*'}]); |
---|
| 1135 | end |
---|
| 1136 | if exist('dt','var') & ~isempty(dt) |
---|
| 1137 | [dtsort,indsort]=sort(dt); |
---|
| 1138 | displ_num(1,:)=numlist_a(indsort); |
---|
| 1139 | displ_num(2,:)=numlist_b(indsort); |
---|
| 1140 | displ_num(3,:)=0; |
---|
| 1141 | displ_num(4,:)=0; |
---|
| 1142 | displ_pair=displ_pair(indsort); |
---|
| 1143 | ref_time=ref_time(indsort); |
---|
| 1144 | end |
---|
| 1145 | end |
---|
| 1146 | if ind_exist==0 |
---|
| 1147 | if isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') |
---|
| 1148 | msgbox_uvmat('ERROR',['no .nc file available for the selected reference index j=' num2str(ref_j) ' and subdirectory ' subdir]) |
---|
| 1149 | else |
---|
| 1150 | msgbox_uvmat('ERROR',['no .nc file available for the selected reference index i=' num2str(ref_i) ' and subdirectory ' subdir]) |
---|
| 1151 | end |
---|
| 1152 | if isequal(mode,'bursts') %case of bursts |
---|
| 1153 | set(handles.list_pair_civ,'String',{'j=*-*'}); |
---|
| 1154 | elseif isequal(mode,'series(Di)') %case of bursts |
---|
| 1155 | set(handles.list_pair_civ,'String',{'Di=*|*'}); |
---|
| 1156 | elseif isequal(mode,'series(Dj)') %case of bursts |
---|
| 1157 | set(handles.list_pair_civ,'String',{'Dj=*|*'}); |
---|
| 1158 | end |
---|
| 1159 | end |
---|
| 1160 | |
---|
| 1161 | val=get(handles.list_pair_civ,'Value'); |
---|
| 1162 | if val > length(displ_pair) |
---|
| 1163 | set(handles.list_pair_civ,'Value',1);% first pair proposed by default in the menu |
---|
| 1164 | val=1; |
---|
| 1165 | end |
---|
| 1166 | iview=get(handles.NomType,'Value'); |
---|
| 1167 | SeriesData.displ_num(iview,:)=(displ_num(:,val))'; |
---|
| 1168 | SeriesData.ref_time=ref_time; |
---|
| 1169 | set(hseries,'UserData',SeriesData) |
---|
| 1170 | list_pair_civ_Callback(hObject, eventdata, handles) |
---|
| 1171 | |
---|
| 1172 | %------------------------------------------------------------- |
---|
| 1173 | % --- Executes on selection in list_pair_civ. |
---|
| 1174 | function list_pair_civ_Callback(hObject, eventdata, handles) |
---|
| 1175 | %------------------------------------------------------------ |
---|
| 1176 | |
---|
| 1177 | %update first_i and last_i according to the chosen image pairs |
---|
| 1178 | testupdate=0; |
---|
| 1179 | Val=get(handles.RootPath,'Value'); |
---|
| 1180 | IndexCell=get(handles.NomType,'String'); |
---|
| 1181 | hseries=get(handles.list_pair_civ,'parent'); |
---|
| 1182 | SeriesData=get(hseries,'UserData'); |
---|
| 1183 | NomType=SeriesData.NomType{Val}; |
---|
| 1184 | list_pair=get(handles.list_pair_civ,'String');%get the menu of image pairs |
---|
| 1185 | index_pair=get(handles.list_pair_civ,'Value'); |
---|
| 1186 | str_pair=list_pair{index_pair}; |
---|
| 1187 | ind_equ=strfind(str_pair,'=');%find '=' |
---|
| 1188 | ind_sep=strfind(str_pair,'|');%find pair separator '|' |
---|
| 1189 | ind_com=strfind(str_pair,':');%find ':' |
---|
| 1190 | test_bursts=0; |
---|
| 1191 | if isempty(ind_sep) |
---|
| 1192 | ind_sep=strfind(str_pair,'-');%find pair separator if it is not '|' |
---|
| 1193 | test_bursts=1;% we are in the case of bursts |
---|
| 1194 | end |
---|
| 1195 | displ_num=[0 0 0 0]; %default |
---|
| 1196 | if ~isempty(ind_sep)&& ~strcmp(str_pair(ind_sep-1),'*')% if there is a pair separator ('|' or '-') |
---|
| 1197 | num1_str=str_pair(ind_equ(1)+1:ind_sep-1); |
---|
| 1198 | num2_str=str_pair(ind_sep+1:ind_com-1); |
---|
| 1199 | num1=str2double(num1_str); |
---|
| 1200 | num2=str2double(num2_str); |
---|
| 1201 | if isequal(num1_str(1),' ') |
---|
| 1202 | num1_str(1)=[]; |
---|
| 1203 | end |
---|
| 1204 | if isequal(num2_str(end),' ') |
---|
| 1205 | num2_str(end)=[]; |
---|
| 1206 | end |
---|
| 1207 | switch NomType |
---|
| 1208 | case {'_i1-i2_j'} |
---|
| 1209 | if isequal(num1_str(1),'0') |
---|
| 1210 | IndexCell{Val}=['_(i-(i+' num2_str ')_j']; |
---|
| 1211 | else |
---|
| 1212 | IndexCell{Val}=['_(i' num1_str ')-(i+' num2_str ')_j']; |
---|
| 1213 | end |
---|
| 1214 | displ_num(3)=num1; |
---|
| 1215 | displ_num(4)=num2; |
---|
| 1216 | case {'_i1-i2'} |
---|
| 1217 | if isequal(num1_str(1),'0') |
---|
| 1218 | IndexCell{Val}=['_(i' num1_str ')-(i+' num2_str ')']; |
---|
| 1219 | else |
---|
| 1220 | IndexCell{Val}=['_(i' num1_str ')-(i+' num2_str ')']; |
---|
| 1221 | end |
---|
| 1222 | displ_num(3)=num1; |
---|
| 1223 | displ_num(4)=num2; |
---|
| 1224 | case '_i_j1-j2' |
---|
| 1225 | if test_bursts |
---|
| 1226 | IndexCell{Val}=['_i_' num1_str '-' num2_str ]; |
---|
| 1227 | else |
---|
| 1228 | if isequal(num1_str(1),'0') |
---|
| 1229 | IndexCell{Val}=['_i_j-(j+' num2_str ')']; |
---|
| 1230 | else |
---|
| 1231 | IndexCell{Val}=['_i_(j' num1_str ')-(j+' num2_str ')']; |
---|
| 1232 | end |
---|
| 1233 | end |
---|
| 1234 | displ_num(1)=num1; |
---|
| 1235 | displ_num(2)=num2; |
---|
| 1236 | case {'#_ab'} %TO COMPLETE |
---|
| 1237 | IndexCell{Val}=['_i_' num1_str '-' num2_str ]; |
---|
| 1238 | |
---|
| 1239 | end |
---|
| 1240 | end |
---|
| 1241 | set(handles.NomType,'String',IndexCell) |
---|
| 1242 | SeriesData.displ_num(Val,:)=displ_num; |
---|
| 1243 | set(hseries,'UserData',SeriesData) |
---|
| 1244 | % set(handles.NomType,'Value',Val) |
---|
| 1245 | |
---|
| 1246 | if ~isequal(str_pair,'Dj=*|*')&~isequal(str_pair,'Di=*|*') |
---|
| 1247 | mode_list=get(handles.mode,'String'); |
---|
| 1248 | mode_value=get(handles.mode,'Value'); |
---|
| 1249 | mode=mode_list{mode_value}; |
---|
| 1250 | if isequal(mode,'series(Di)') |
---|
| 1251 | first_i=str2num(get(handles.first_i,'String')); |
---|
| 1252 | last_i=str2num(get(handles.last_i,'String')); |
---|
| 1253 | incr_i=str2num(get(handles.incr_i,'String')); |
---|
| 1254 | num1=first_i:incr_i:last_i; |
---|
| 1255 | lastfieldCell=get(handles.nb_field,'String'); |
---|
| 1256 | lastfield=str2num(lastfieldCell{1}); |
---|
| 1257 | if ~isempty(lastfield) |
---|
| 1258 | ind=find((num1-floor(index_pair/2)*ones(size(num1))>0)& (num1+ceil(index_pair/2)*ones(size(num1))<=lastfield)); |
---|
| 1259 | num1=num1(ind); |
---|
| 1260 | end |
---|
| 1261 | set(handles.first_i,'String',num2str(num1(1))); |
---|
| 1262 | set(handles.last_i,'String',num2str(num1(end))); |
---|
| 1263 | testupdate=1; |
---|
| 1264 | elseif isequal(mode,'series(Dj)') |
---|
| 1265 | first_j=str2num(get(handles.first_j,'String')); |
---|
| 1266 | last_j=str2num(get(handles.last_j,'String')); |
---|
| 1267 | incr_j=str2num(get(handles.incr_j,'String')); |
---|
| 1268 | num_j=first_j:incr_j:last_j; |
---|
| 1269 | lastfieldCell=get(handles.nb_field2,'String'); |
---|
| 1270 | if ~isempty(lastfieldCell) |
---|
| 1271 | lastfield2=lastfieldCell{1}; |
---|
| 1272 | ind=find((num_j-floor(index_pair/2)*ones(size(num_j))>0)& ... |
---|
| 1273 | (num_j+ceil(index_pair/2)*ones(size(num_j))<=lastfield2)); |
---|
| 1274 | end |
---|
| 1275 | testupdate=1; |
---|
| 1276 | end |
---|
| 1277 | |
---|
| 1278 | %update the first and last times of the series |
---|
| 1279 | if testupdate & isfield(SeriesData,'Time') |
---|
| 1280 | if ~isempty(SeriesData.Time{1}) |
---|
| 1281 | displ_time(handles,SeriesData.Time{1}); |
---|
| 1282 | end |
---|
| 1283 | end |
---|
| 1284 | end |
---|
| 1285 | %--------------------------------------------------- |
---|
| 1286 | % --- Executes on button press in RUN. |
---|
| 1287 | %------------------------------------------------------ |
---|
| 1288 | function RUN_Callback(hObject, eventdata, handles) |
---|
| 1289 | |
---|
| 1290 | %read root name and field type |
---|
| 1291 | set(handles.RUN,'BusyAction','queue'); |
---|
| 1292 | hseries=get(handles.RUN,'parent'); |
---|
| 1293 | set(0,'CurrentFigure',hseries) |
---|
| 1294 | if isequal(get(handles.GetObject,'Value'),1) |
---|
| 1295 | Series.GetObject=1; |
---|
| 1296 | GetObject_Callback(hObject, eventdata, handles) |
---|
| 1297 | else |
---|
| 1298 | Series.GetObject=0; |
---|
| 1299 | end |
---|
| 1300 | SeriesData=get(hseries,'UserData'); |
---|
| 1301 | if isfield(SeriesData,'sethandles') |
---|
| 1302 | if iscell(SeriesData.sethandles) |
---|
| 1303 | Series.sethandles=SeriesData.sethandles{1}; |
---|
| 1304 | else |
---|
| 1305 | Series.sethandles=SeriesData.sethandles;%retrieve the handles of the set_object interface (to define projection objects) |
---|
| 1306 | end |
---|
| 1307 | end |
---|
| 1308 | |
---|
| 1309 | %reinitiate waitbar position |
---|
| 1310 | Series.WaitbarPos=get(handles.waitbar_frame,'Position');%TO SUPPRESS |
---|
| 1311 | waitbarpos=Series.WaitbarPos; |
---|
| 1312 | waitbarpos(4)=0.005;%reinitialize waitbar to zero height |
---|
| 1313 | waitbarpos(2)=Series.WaitbarPos(2)+Series.WaitbarPos(4)-0.005; |
---|
| 1314 | set(handles.waitbar,'Position',waitbarpos) |
---|
| 1315 | |
---|
| 1316 | % read input file parameters and set menus |
---|
| 1317 | Series.PathProject=get(handles.PathCampaign,'String'); |
---|
| 1318 | RootPath=get(handles.RootPath,'String');% path of the root name of the first field series |
---|
| 1319 | RootFile=get(handles.RootFile,'String');% root name of the first field series |
---|
| 1320 | SubDir=get(handles.SubDir,'String');% subdirectory for netcdf files |
---|
| 1321 | FileExt=get(handles.FileExt,'String');%file extension |
---|
| 1322 | if isempty(SeriesData) |
---|
| 1323 | msgbox_uvmat('ERROR','no input file series') |
---|
| 1324 | return |
---|
| 1325 | end |
---|
| 1326 | NomType=SeriesData.NomType; |
---|
| 1327 | if length(RootPath)==1 %string character input for user fct |
---|
| 1328 | Series.RootPath=RootPath{1}; |
---|
| 1329 | Series.RootFile=RootFile{1}; |
---|
| 1330 | Series.SubDir=SubDir{1}; |
---|
| 1331 | Series.FileExt=FileExt{1}; |
---|
| 1332 | Series.NomType=NomType{1}; |
---|
| 1333 | else %cell input for user fct |
---|
| 1334 | Series.RootPath=RootPath; |
---|
| 1335 | Series.RootFile=RootFile; |
---|
| 1336 | Series.SubDir=SubDir; |
---|
| 1337 | Series.FileExt=FileExt; |
---|
| 1338 | Series.NomType=NomType; |
---|
| 1339 | end |
---|
| 1340 | if isequal(get(handles.FieldMenu,'Visible'),'on') |
---|
| 1341 | FieldMenu=get(handles.FieldMenu,'String'); |
---|
| 1342 | FieldValue=get(handles.FieldMenu,'Value'); |
---|
| 1343 | Series.Field=FieldMenu(FieldValue); |
---|
| 1344 | end |
---|
| 1345 | menu_coord_state=get(handles.CoordType,'Visible'); |
---|
| 1346 | Series.CoordType='';%default |
---|
| 1347 | if isequal(menu_coord_state,'on') |
---|
| 1348 | menu_coord=get(handles.CoordType,'String'); |
---|
| 1349 | menu_index=get(handles.CoordType,'Value'); |
---|
| 1350 | Series.CoordType=menu_coord{menu_index}; |
---|
| 1351 | end |
---|
| 1352 | Series.hseries=get(hObject,'Parent'); |
---|
| 1353 | if isequal(get(handles.ParamVal,'Visible'),'on') |
---|
| 1354 | ParamKey=get(handles.ParamKey,'String'); |
---|
| 1355 | if ischar(ParamKey) |
---|
| 1356 | ParamKey{1}=ParamKey; |
---|
| 1357 | end |
---|
| 1358 | ParamString=get(handles.ParamVal,'String'); |
---|
| 1359 | if ischar(ParamString) |
---|
| 1360 | for ilist=1:size(ParamString,1) |
---|
| 1361 | ParamVal{ilist}=ParamString(ilist,:); |
---|
| 1362 | end |
---|
| 1363 | else |
---|
| 1364 | ParamVal=ParamString; |
---|
| 1365 | end |
---|
| 1366 | end |
---|
| 1367 | |
---|
| 1368 | %read the set of field numbers |
---|
| 1369 | first_i=str2num(get(handles.first_i,'String')); |
---|
| 1370 | last_i=str2num(get(handles.last_i,'String')); |
---|
| 1371 | incr_i=str2num(get(handles.incr_i,'String')); |
---|
| 1372 | first_j=str2num(get(handles.first_j,'String')); |
---|
| 1373 | last_j=str2num(get(handles.last_j,'String')); |
---|
| 1374 | incr_j=str2num(get(handles.incr_j,'String')); |
---|
| 1375 | if ~isequal(get(handles.first_i,'Visible'),'on') |
---|
| 1376 | first_i=1; |
---|
| 1377 | last_i=1; |
---|
| 1378 | incr_i=1; |
---|
| 1379 | end |
---|
| 1380 | if ~isequal(get(handles.first_j,'Visible'),'on') |
---|
| 1381 | first_j=1; |
---|
| 1382 | last_j=1; |
---|
| 1383 | incr_j=1; |
---|
| 1384 | end |
---|
| 1385 | Series.NbSlice=str2num(get(handles.NbSlice,'String')); |
---|
| 1386 | if isequal(first_i,[])|isequal(first_j,[]), msgbox_uvmat('ERROR','first field number not defined'),... |
---|
| 1387 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
| 1388 | if isequal(last_i,[])| isequal(last_j,[]),msgbox_uvmat('ERROR','last field number not defined'),... |
---|
| 1389 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
| 1390 | if isequal(incr_i,[])| isequal(incr_j,[]),msgbox_uvmat('ERROR','increment in field number not defined'),... |
---|
| 1391 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
| 1392 | if last_i < first_i | last_j < first_j , msgbox_uvmat('ERROR','last field number must be larger than the first one'),... |
---|
| 1393 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
| 1394 | num_i=[first_i:incr_i:last_i]; |
---|
| 1395 | num_j=[first_j:incr_j:last_j]; |
---|
| 1396 | nbfield_cell=get(handles.nb_field,'String'); |
---|
| 1397 | nbfield=[]; %default |
---|
| 1398 | for iview=1:length(nbfield_cell) |
---|
| 1399 | nb=str2num(nbfield_cell{iview}); |
---|
| 1400 | if ~isempty(nb) |
---|
| 1401 | nbfield=[nbfield nb]; |
---|
| 1402 | end |
---|
| 1403 | end |
---|
| 1404 | nbfield=min(nbfield); |
---|
| 1405 | nbfield2_cell=get(handles.nb_field2,'String'); |
---|
| 1406 | nbfield2=[]; %default |
---|
| 1407 | for iview=1:length(nbfield2_cell) |
---|
| 1408 | nb=str2num(nbfield2_cell{iview}); |
---|
| 1409 | if ~isempty(nb) |
---|
| 1410 | nbfield2=[nbfield2 nb]; |
---|
| 1411 | end |
---|
| 1412 | end |
---|
| 1413 | nbfield2=min(nbfield2); |
---|
| 1414 | |
---|
| 1415 | %get complementary information from the 'series' interface |
---|
| 1416 | list_action=get(handles.ACTION,'String');% list menu action |
---|
| 1417 | index_action=get(handles.ACTION,'Value');% selected string index |
---|
| 1418 | action= list_action{index_action}; % selected string |
---|
| 1419 | mode_list=get(handles.mode,'String'); |
---|
| 1420 | index_mode=get(handles.mode,'Value'); |
---|
| 1421 | mode=mode_list{index_mode}; |
---|
| 1422 | ind_shift=0;%default |
---|
| 1423 | |
---|
| 1424 | %determine the list of input file names |
---|
| 1425 | nbmissing=0; |
---|
| 1426 | for iview=1:length(RootPath) |
---|
| 1427 | %case of pairs (.nc files) |
---|
| 1428 | |
---|
| 1429 | if isequal(NomType{iview},'_i_j1-j2')| isequal(NomType{iview},'_i1-i2_j')| isequal(NomType{iview},'_i1-i2')| isequal(NomType{iview},'#_ab') |
---|
| 1430 | ind_shift=SeriesData.displ_num(iview,:); |
---|
| 1431 | if isequal(ind_shift,[0 0 0 0]) % undefined pairs |
---|
| 1432 | if isequal(NomType{iview},'#_ab') |
---|
| 1433 | mode='#_ab'; |
---|
| 1434 | end |
---|
| 1435 | [num_i1,num_i2,num_j1,num_j2,nbmissing]=netseries_generator(fullfile(RootPath{iview},RootFile{iview}),SubDir{iview},mode,first_i,incr_i,last_i,first_j,incr_j,last_j); |
---|
| 1436 | else |
---|
| 1437 | [num_i1,num_i2,num_j1,num_j2,num_i,num_j]=find_file_indices(num_i,num_j,ind_shift,NomType{iview},mode); |
---|
| 1438 | if isempty(num_i) |
---|
| 1439 | msgbox_uvmat('ERROR','ERROR: empty set of input files chosen') |
---|
| 1440 | return |
---|
| 1441 | end |
---|
| 1442 | if num_i(1)>first_i |
---|
| 1443 | set(handles.first_i,'String',num2str(num_i(1)))%update the display of first field |
---|
| 1444 | last_i_Callback(hObject, eventdata, handles) |
---|
| 1445 | end |
---|
| 1446 | if num_i(end)<last_i |
---|
| 1447 | set(handles.last_i,'String',num2str(num_i(end)))%update the display of last field |
---|
| 1448 | last_i_Callback(hObject, eventdata, handles) |
---|
| 1449 | end |
---|
| 1450 | if num_j(1)>first_j |
---|
| 1451 | set(handles.first_j,'String',num2str(num_j(1)))%update the display of first field |
---|
| 1452 | last_j_Callback(hObject, eventdata, handles) |
---|
| 1453 | end |
---|
| 1454 | if num_j(end)<last_j |
---|
| 1455 | set(handles.last_j,'String',num2str(num_j(end)))%update the display of last field |
---|
| 1456 | last_j_Callback(hObject, eventdata, handles) |
---|
| 1457 | end |
---|
| 1458 | end |
---|
| 1459 | else%case of images |
---|
| 1460 | [num_i1,num_j1]=meshgrid(num_i,num_j); |
---|
| 1461 | num_i2=num_i1; |
---|
| 1462 | num_j2=num_j1; |
---|
| 1463 | end |
---|
| 1464 | if length(RootPath)>1 |
---|
| 1465 | num_i1_cell{iview}=num_i1; |
---|
| 1466 | num_i2_cell{iview}=num_i2; |
---|
| 1467 | num_j1_cell{iview}=num_j1; |
---|
| 1468 | num_j2_cell{iview}=num_j2; |
---|
| 1469 | end |
---|
| 1470 | end |
---|
| 1471 | |
---|
| 1472 | % RUN RUN' |
---|
| 1473 | path_series=which('series'); |
---|
| 1474 | list_path=get(handles.ACTION,'UserData'); |
---|
| 1475 | index=get(handles.ACTION,'Value'); |
---|
| 1476 | fct_path=list_path{index}; %path stored for the function ACTION |
---|
| 1477 | if ~isequal(fct_path,path_series) |
---|
| 1478 | eval(['spath=which(''' action ''');']) %spath = current path of the selected function ACTION |
---|
| 1479 | if ~isequal(spath,fct_path)& exist(fct_path,'dir') |
---|
| 1480 | addpath(fct_path)% add the prescribed path if not the current one |
---|
| 1481 | end |
---|
| 1482 | end |
---|
| 1483 | Series.Action=action;%name of the processing programme |
---|
| 1484 | set(handles.RUN,'BackgroundColor',[0.831 0.816 0.784]) |
---|
| 1485 | drawnow |
---|
| 1486 | if length(RootPath)>1 |
---|
| 1487 | feval(action,num_i1_cell,num_i2_cell,num_j1_cell,num_j2_cell,Series); |
---|
| 1488 | else |
---|
| 1489 | feval(action,num_i1,num_i2,num_j1,num_j2,Series); |
---|
| 1490 | end |
---|
| 1491 | set(handles.RUN,'BackgroundColor',[1 0 0]) |
---|
| 1492 | |
---|
| 1493 | % %save the current interface setting as figure namefig, append .0 to the name if it already exists |
---|
| 1494 | % detect=1; |
---|
| 1495 | % while detect==1 |
---|
| 1496 | % namefigfull=[namedoc '.fig']; |
---|
| 1497 | % hh=dir(namefigfull); |
---|
| 1498 | % if ~isempty(hh) |
---|
| 1499 | % detect=1; |
---|
| 1500 | % namedoc=[namedoc '.0']; |
---|
| 1501 | % else |
---|
| 1502 | % detect=0; |
---|
| 1503 | % end |
---|
| 1504 | % end |
---|
| 1505 | % saveas(gcbf,namefigfull);%save the interface with name namefigfull (A CHANGER EN FICHIER .xml) |
---|
| 1506 | |
---|
| 1507 | %---------------------------------------------------- |
---|
| 1508 | function STOP_Callback(hObject, eventdata, handles) |
---|
| 1509 | set(handles.RUN, 'BusyAction','cancel') |
---|
| 1510 | set(handles.RUN,'BackgroundColor',[1 0 0]) |
---|
| 1511 | |
---|
| 1512 | %---------------------------------------------- |
---|
| 1513 | |
---|
| 1514 | %---------------------------------------------------- |
---|
| 1515 | function first_i_Callback(hObject, eventdata, handles) |
---|
| 1516 | last_i_Callback(hObject, eventdata, handles) |
---|
| 1517 | |
---|
| 1518 | %---------------------------------------------- |
---|
| 1519 | function last_i_Callback(hObject, eventdata, handles) |
---|
| 1520 | hseries=get(handles.last_i,'parent'); |
---|
| 1521 | first_i=str2num(get(handles.first_i,'String')); |
---|
| 1522 | last_i=str2num(get(handles.last_i,'String')); |
---|
| 1523 | ref_i=ceil((first_i+last_i)/2); |
---|
| 1524 | set(handles.ref_i,'String', num2str(ref_i)) |
---|
| 1525 | ref_i_Callback(hObject, eventdata, handles) |
---|
| 1526 | SeriesData=get(hseries,'UserData'); |
---|
| 1527 | if ~isfield(SeriesData,'Time') |
---|
| 1528 | SeriesData.Time{1}=[]; |
---|
| 1529 | end |
---|
| 1530 | displ_time(handles,SeriesData.Time{1}); |
---|
| 1531 | |
---|
| 1532 | %------------------------------------------------------- |
---|
| 1533 | function first_j_Callback(hObject, eventdata, handles) |
---|
| 1534 | last_j_Callback(hObject, eventdata, handles) |
---|
| 1535 | |
---|
| 1536 | %------------------------------------------------------- |
---|
| 1537 | function last_j_Callback(hObject, eventdata, handles) |
---|
| 1538 | hseries=get(handles.last_i,'parent'); |
---|
| 1539 | first_j=str2num(get(handles.first_j,'String')); |
---|
| 1540 | last_j=str2num(get(handles.last_j,'String')); |
---|
| 1541 | ref_j=ceil((first_j+last_j)/2); |
---|
| 1542 | set(handles.ref_j,'String', num2str(ref_j)) |
---|
| 1543 | |
---|
| 1544 | ref_j_Callback(hObject, eventdata, handles) |
---|
| 1545 | SeriesData=get(hseries,'UserData'); |
---|
| 1546 | if ~isfield(SeriesData,'Time') |
---|
| 1547 | SeriesData.Time{1}=[]; |
---|
| 1548 | end |
---|
| 1549 | displ_time(handles,SeriesData.Time{1}); |
---|
| 1550 | |
---|
| 1551 | |
---|
| 1552 | |
---|
| 1553 | |
---|
| 1554 | %------------------------------------------------------- |
---|
| 1555 | function ref_i_Callback(hObject, eventdata, handles) |
---|
| 1556 | mode_list=get(handles.mode,'String'); |
---|
| 1557 | mode_value=get(handles.mode,'Value'); |
---|
| 1558 | mode=mode_list{mode_value}; |
---|
| 1559 | hseries=get(handles.ref_i,'parent'); |
---|
| 1560 | SeriesData=get(hseries,'UserData'); |
---|
| 1561 | %NomTypeCell=get(handles.NomType,'String'); |
---|
| 1562 | NomTypeCell=SeriesData.NomType; |
---|
| 1563 | if ~isempty(NomTypeCell) |
---|
| 1564 | Val=get(handles.NomType,'Value'); |
---|
| 1565 | NomType=NomTypeCell{Val}; |
---|
| 1566 | % for ilist=1:length(NomType) |
---|
| 1567 | if isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j')|| isequal(NomType,'_i1-i2') |
---|
| 1568 | if isequal(mode,'series(Di)') |
---|
| 1569 | find_netcpair_civ(hObject, eventdata, handles,Val);% update the menu of pairs depending on the available netcdf files |
---|
| 1570 | % break |
---|
| 1571 | end |
---|
| 1572 | end |
---|
| 1573 | end |
---|
| 1574 | |
---|
| 1575 | %---------------------------------------------------- |
---|
| 1576 | function ref_j_Callback(hObject, eventdata, handles) |
---|
| 1577 | mode_list=get(handles.mode,'String'); |
---|
| 1578 | mode_value=get(handles.mode,'Value'); |
---|
| 1579 | mode=mode_list{mode_value}; |
---|
| 1580 | hseries=get(handles.ref_i,'parent'); |
---|
| 1581 | SeriesData=get(hseries,'UserData'); |
---|
| 1582 | %NomTypeCell=get(handles.NomType,'String'); |
---|
| 1583 | NomTypeCell=SeriesData.NomType; |
---|
| 1584 | if ~isempty(NomTypeCell) |
---|
| 1585 | Val=get(handles.NomType,'Value'); |
---|
| 1586 | NomType=NomTypeCell{Val}; |
---|
| 1587 | % NomType=get(handles.NomType,'String'); |
---|
| 1588 | if isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j')|| isequal(NomType,'_i1-i2') |
---|
| 1589 | if isequal(mode,'series(Dj)') |
---|
| 1590 | find_netcpair_civ(hObject, eventdata, handles,Val);% update the menu of pairs depending on the available netcdf files |
---|
| 1591 | % break |
---|
| 1592 | end |
---|
| 1593 | end |
---|
| 1594 | end |
---|
| 1595 | |
---|
| 1596 | %---------------------------------------------------- |
---|
| 1597 | % --- Executes on selection change in ACTION. |
---|
| 1598 | function ACTION_Callback(hObject, eventdata, handles) |
---|
| 1599 | list_ACTION=get(handles.ACTION,'String');% list menu fields |
---|
| 1600 | index_ACTION=get(handles.ACTION,'Value');% selected string index |
---|
| 1601 | ACTION= list_ACTION{index_ACTION}; % selected function name |
---|
| 1602 | path_series=which('series');%path to series.m |
---|
| 1603 | list_path=get(handles.ACTION,'UserData');%list of recorded paths to functions of the list ACTION |
---|
| 1604 | nb_builtin=0; |
---|
| 1605 | for ilist=1:length(list_path) |
---|
| 1606 | if isequal(list_path{ilist},path_series) |
---|
| 1607 | nb_builtin=nb_builtin+1; |
---|
| 1608 | else |
---|
| 1609 | break |
---|
| 1610 | end |
---|
| 1611 | end |
---|
| 1612 | if nb_builtin==0% the path of series has been changed, reinitialize |
---|
| 1613 | series_OpeningFcn(hObject, eventdata, handles) |
---|
| 1614 | return |
---|
| 1615 | end |
---|
| 1616 | |
---|
| 1617 | % add a new function to the menu |
---|
| 1618 | if isequal(ACTION,'more...') |
---|
| 1619 | pathfct=fileparts(path_series); |
---|
| 1620 | browse_name=fullfile(path_series,'SERIES_FCT');%go to UVMAT/SERIES_FCT by default |
---|
| 1621 | if length(list_path)>nb_builtin |
---|
| 1622 | browse_name=list_path{end};% initialize browser with the path of the last introduced function |
---|
| 1623 | end |
---|
| 1624 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1625 | {'*.m', ' (*.m)'; |
---|
| 1626 | '*.m', '.m files '; ... |
---|
| 1627 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1628 | 'Pick a file',browse_name); |
---|
| 1629 | if length(FileName)<2 |
---|
| 1630 | return |
---|
| 1631 | end |
---|
| 1632 | ext_fct=FileName(end-1:end); |
---|
| 1633 | if ~isequal(ext_fct,'.m') |
---|
| 1634 | msgbox_uvmat('ERROR','a Matlab function .m must be introduced'); |
---|
| 1635 | return |
---|
| 1636 | end |
---|
| 1637 | ACTION=FileName(1:end-2);% ACTION choice updated by the selected item |
---|
| 1638 | |
---|
| 1639 | % insert the choice in the action menu |
---|
| 1640 | menu_str=update_menu(handles.ACTION,ACTION);%new action menu in which the new item has been appended if needed |
---|
| 1641 | index_ACTION=get(handles.ACTION,'Value');% currently selected index in the list |
---|
| 1642 | list_path{index_ACTION}=PathName; |
---|
| 1643 | if length(menu_str)>nb_builtin+5; |
---|
| 1644 | nbremove=length(menu_str)-nb_builtin-5; |
---|
| 1645 | menu_str(nb_builtin+1:end-5)=[]; |
---|
| 1646 | list_path(nb_builtin+1:end-4)=[]; |
---|
| 1647 | index_ACTION=index_ACTION-nbremove; |
---|
| 1648 | set(handles.ACTION,'Value',index_ACTION) |
---|
| 1649 | set(handles.ACTION,'String',menu_str) |
---|
| 1650 | end |
---|
| 1651 | list_path{index_ACTION}=PathName; |
---|
| 1652 | set(handles.ACTION,'UserData',list_path); |
---|
| 1653 | set(handles.path,'enable','inactive')% indicate that the current path is accessible (not 'off') |
---|
| 1654 | |
---|
| 1655 | %record the current menu in personal file profil_perso |
---|
| 1656 | dir_perso=prefdir; |
---|
| 1657 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 1658 | for ilist=nb_builtin+1:length(menu_str)-1 |
---|
| 1659 | series_fct{ilist-nb_builtin}=fullfile(list_path{ilist},[menu_str{ilist} '.m']); |
---|
| 1660 | end |
---|
| 1661 | if exist(profil_perso,'file') |
---|
| 1662 | save(profil_perso,'series_fct','-append') |
---|
| 1663 | else |
---|
| 1664 | txt=ver; |
---|
| 1665 | Release=txt(1).Release; |
---|
| 1666 | relnumb=str2num(Release(3:4)); |
---|
| 1667 | if relnumb >= 14 |
---|
| 1668 | save(profil_perso,'series_fct','-V6') |
---|
| 1669 | else |
---|
| 1670 | save(profil_perso, 'series_fct') |
---|
| 1671 | end |
---|
| 1672 | end |
---|
| 1673 | end |
---|
| 1674 | |
---|
| 1675 | %check the current path to the selected function |
---|
| 1676 | PathName=list_path{index_ACTION};%current recorded path |
---|
| 1677 | if ~isequal(path_series,PathName) |
---|
| 1678 | CurrentPath=fileparts(which(ACTION)); |
---|
[17] | 1679 | if ~isequal(CurrentPath,PathName)&&~isequal(CurrentPath,fullfile(PathName,'private')) |
---|
[2] | 1680 | addpath(PathName) |
---|
| 1681 | errormsg=check_functions; |
---|
| 1682 | msgbox_uvmat('CONFIRMATION',[['path ' PathName ' added to the current Matlab pathes'];errormsg]) |
---|
| 1683 | end |
---|
| 1684 | end |
---|
| 1685 | set(handles.path,'String',PathName); %show the path to the senlected function |
---|
| 1686 | |
---|
| 1687 | %default setting for the visibility of the GUI elements |
---|
| 1688 | %set( handles.Field,'Visible','off')%default |
---|
| 1689 | set(handles.RootPath,'UserData','many') |
---|
| 1690 | set(handles.SubDir,'Visible','on') |
---|
| 1691 | set(handles.RootFile,'Visible','on') |
---|
| 1692 | set(handles.NomType,'Visible','on') |
---|
| 1693 | set(handles.FileExt,'Visible','on') |
---|
| 1694 | set(handles.NbSlice,'Visible','off') |
---|
| 1695 | set(handles.NbSlice_title,'Visible','off') |
---|
| 1696 | set(handles.VelTypeMenu,'Visible','off'); |
---|
| 1697 | set(handles.VelType_text,'Visible','off'); |
---|
| 1698 | set(handles.VelTypeMenu_1,'Visible','off'); |
---|
| 1699 | set(handles.VelType_text_1,'Visible','off'); |
---|
| 1700 | view_FieldMenu(handles,'off') |
---|
| 1701 | view_FieldMenu_1(handles,'off') |
---|
| 1702 | view_TRANSFORM(handles,'off') |
---|
| 1703 | set(handles.ProjObject_frame,'Visible','off'); |
---|
| 1704 | set(handles.GetMask,'Visible','off') |
---|
| 1705 | set(handles.Mask,'Visible','off') |
---|
| 1706 | set(handles.GetObject,'Visible','off'); |
---|
| 1707 | set(handles.ProjObject,'Visible','off'); |
---|
| 1708 | set(handles.OutputDir,'Visible','off'); |
---|
| 1709 | set(handles.PARAMETERS_frame,'Visible','off'); |
---|
| 1710 | set(handles.PARAMETERS_title,'Visible','off'); |
---|
| 1711 | set(handles.ParamKey,'Visible','off') |
---|
| 1712 | set(handles.ParamVal,'Visible','off') |
---|
| 1713 | ParamKey={}; |
---|
| 1714 | set(handles.FieldMenu,'Enable','off') |
---|
| 1715 | set(handles.VelTypeMenu,'Enable','off') |
---|
| 1716 | set(handles.FieldMenu_1,'Enable','off') |
---|
| 1717 | set(handles.VelTypeMenu_1,'Enable','off') |
---|
| 1718 | set(handles.CoordType,'Enable','off') |
---|
| 1719 | %set the displayed GUI item needed for input parameters |
---|
| 1720 | %list_input=feval(ACTION);% input list asked by the selected function |
---|
| 1721 | varargout=feval(ACTION);% input list asked by the selected function |
---|
| 1722 | Param_list={}; |
---|
| 1723 | % RootPath=get(handles.RootPath,'String'); |
---|
| 1724 | % RootFile=get(handles.RootFile,'String'); |
---|
| 1725 | |
---|
| 1726 | %nb_series=length(RootFile); |
---|
| 1727 | FileExt=get(handles.FileExt,'String'); |
---|
| 1728 | nb_series=length(FileExt); |
---|
| 1729 | testima_series=1; %test for a list of images only |
---|
| 1730 | testima=1; |
---|
| 1731 | testima_1=1; |
---|
| 1732 | testciv_series=1; |
---|
| 1733 | for iview=1:nb_series |
---|
| 1734 | ext=FileExt{iview}; |
---|
| 1735 | if length(ext)<2 |
---|
| 1736 | ext='.none'; |
---|
| 1737 | end |
---|
| 1738 | testimaview=~isempty(imformats(ext(2:end))) || isequal(lower(ext),'.avi'); |
---|
| 1739 | if ~testimaview |
---|
| 1740 | if iview==1 |
---|
| 1741 | testima=0; |
---|
| 1742 | end |
---|
| 1743 | if iview==2 |
---|
| 1744 | testima_1=0; |
---|
| 1745 | end |
---|
| 1746 | testima_series=0; |
---|
| 1747 | end |
---|
| 1748 | end |
---|
| 1749 | for ilist=1:length(varargout)-1 |
---|
| 1750 | switch varargout{ilist} |
---|
| 1751 | %RootFile always visible |
---|
| 1752 | case 'RootPath' %visible by default |
---|
| 1753 | value=lower(varargout{ilist+1}); |
---|
| 1754 | if isequal(value,'one')||isequal(value,'two')||isequal(value,'many') |
---|
| 1755 | set(handles.RootFile,'UserData',value)% for use in menu Open_insert |
---|
| 1756 | end |
---|
| 1757 | case 'SubDir' %visible by default |
---|
| 1758 | if isequal(lower(varargout{ilist+1}),'off') |
---|
| 1759 | set(handles.SubDir,'Visible','off') |
---|
| 1760 | end |
---|
| 1761 | case 'RootFile' %visible by default |
---|
| 1762 | value=lower(varargout{ilist+1}); |
---|
| 1763 | if isequal(value,'off') |
---|
| 1764 | set(handles.RootFile,'Visible','off') |
---|
| 1765 | elseif isequal(value,'one')||isequal(value,'two')||isequal(value,'many') |
---|
| 1766 | set(handles.RootFile,'Visible','on') |
---|
| 1767 | set(handles.RootFile,'UserData',value)% for use in menu Open_insert |
---|
| 1768 | end |
---|
| 1769 | case 'NomType' %visible by default |
---|
| 1770 | if isequal(lower(varargout{ilist+1}),'off') |
---|
| 1771 | set(handles.NomType,'Visible','off') |
---|
| 1772 | end |
---|
| 1773 | case 'FileExt' %visible by default |
---|
| 1774 | if isequal(lower(varargout{ilist+1}),'off') |
---|
| 1775 | set(handles.FileExt,'Visible','off') |
---|
| 1776 | end |
---|
| 1777 | case 'NbSlice' %hidden by default |
---|
| 1778 | if isequal(lower(varargout{ilist+1}),'on') |
---|
| 1779 | set(handles.NbSlice,'Visible','on') |
---|
| 1780 | set(handles.NbSlice_title,'Visible','on') |
---|
| 1781 | end |
---|
| 1782 | case 'VelTypeMenu' %hidden by default |
---|
| 1783 | if isequal(lower(varargout{ilist+1}),'one') || isequal(lower(varargout{ilist+1}),'two') |
---|
| 1784 | set(handles.VelTypeMenu,'Enable','on') |
---|
| 1785 | if nb_series >=1 && ~testima_series |
---|
| 1786 | set(handles.VelTypeMenu,'Visible','on') |
---|
| 1787 | set(handles.VelType_text,'Visible','on'); |
---|
| 1788 | set(handles.Field_frame,'Visible','on') |
---|
| 1789 | end |
---|
| 1790 | end |
---|
| 1791 | if isequal(lower(varargout{ilist+1}),'two') |
---|
| 1792 | set(handles.VelTypeMenu_1,'Enable','on') |
---|
| 1793 | if nb_series >=2 && ~testima_series |
---|
| 1794 | set(handles.VelTypeMenu_1,'Visible','on') |
---|
| 1795 | set(handles.VelType_text_1,'Visible','on'); |
---|
| 1796 | end |
---|
| 1797 | end |
---|
| 1798 | case 'FieldMenu' %hidden by default |
---|
| 1799 | if isequal(lower(varargout{ilist+1}),'one')||isequal(lower(varargout{ilist+1}),'two') |
---|
| 1800 | set(handles.FieldMenu,'Enable','on') % test for MenuBorser |
---|
| 1801 | if nb_series >=1 && ~testima_series |
---|
| 1802 | view_FieldMenu(handles,'on') |
---|
| 1803 | end |
---|
| 1804 | end |
---|
| 1805 | if isequal(lower(varargout{ilist+1}),'two') |
---|
| 1806 | set(handles.FieldMenu_1,'Enable','on') |
---|
| 1807 | if nb_series >=2 && ~testima_1 |
---|
| 1808 | view_FieldMenu_1(handles,'on') |
---|
| 1809 | end |
---|
| 1810 | end |
---|
| 1811 | case 'CoordType' %hidden by default |
---|
| 1812 | if isequal(lower(varargout{ilist+1}),'on') |
---|
| 1813 | set(handles.CoordType,'Enable','on') |
---|
| 1814 | view_TRANSFORM(handles,'on') |
---|
| 1815 | end |
---|
| 1816 | case 'GetObject' %hidden by default |
---|
| 1817 | if isequal(lower(varargout{ilist+1}),'on') |
---|
| 1818 | set(handles.ProjObject_frame,'Visible','on') |
---|
| 1819 | set(handles.GetObject,'Visible','on'); |
---|
| 1820 | end |
---|
| 1821 | case 'Mask' %hidden by default |
---|
| 1822 | if isequal(lower(varargout{ilist+1}),'on') |
---|
| 1823 | set(handles.ProjObject_frame,'Visible','on') |
---|
| 1824 | set(handles.GetMask,'Visible','on'); |
---|
| 1825 | end |
---|
| 1826 | case 'PARAMETER' |
---|
| 1827 | set(handles.PARAMETERS_frame,'Visible','on') |
---|
| 1828 | set(handles.PARAMETERS_title,'Visible','on') |
---|
| 1829 | set(handles.ParamKey,'Visible','on') |
---|
| 1830 | %set(handles.ParamVal,'Visible','on') |
---|
| 1831 | Param_str=varargout{ilist+1}; |
---|
| 1832 | Param_list=[Param_list; {Param_str}]; |
---|
| 1833 | end |
---|
| 1834 | end |
---|
| 1835 | if ~isempty(Param_list) |
---|
| 1836 | set(handles.ParamKey,'String',Param_list) |
---|
| 1837 | set(handles.ParamVal,'Visible','on') |
---|
| 1838 | end |
---|
| 1839 | |
---|
| 1840 | %------------------------------------------------------------------- |
---|
| 1841 | % --- Executes on selection change in FieldMenu. |
---|
| 1842 | %------------------------------------------------------------------- |
---|
| 1843 | function FieldMenu_Callback(hObject, eventdata, handles) |
---|
| 1844 | |
---|
| 1845 | field_str=get(handles.FieldMenu,'String'); |
---|
| 1846 | field_index=get(handles.FieldMenu,'Value'); |
---|
| 1847 | field=field_str{field_index(1)}; |
---|
| 1848 | if isequal(field,'get_field...') |
---|
| 1849 | hget_field=findobj(allchild(0),'name','get_field'); |
---|
| 1850 | if ~isempty(hget_field) |
---|
| 1851 | delete(hget_field)%delete opened versions of get_field |
---|
| 1852 | end |
---|
| 1853 | hseries=get(handles.FieldMenu,'parent'); |
---|
| 1854 | SeriesData=get(hseries,'UserData'); |
---|
| 1855 | filename=SeriesData.CurrentInputFile; |
---|
| 1856 | if exist(filename,'file') |
---|
| 1857 | get_field(filename) |
---|
| 1858 | end |
---|
| 1859 | elseif isequal(field,'more...') |
---|
| 1860 | str=calc_field; |
---|
| 1861 | [ind_answer,v] = listdlg('PromptString','Select a file:',... |
---|
| 1862 | 'SelectionMode','single',... |
---|
| 1863 | 'ListString',str); |
---|
| 1864 | % edit the choice in the fields and action menu |
---|
| 1865 | scalar=cell2mat(str(ind_answer)); |
---|
| 1866 | update_menu(handles.FieldMenu,scalar) |
---|
| 1867 | end |
---|
| 1868 | |
---|
| 1869 | %------------------------------------------------------ |
---|
| 1870 | % --- Executes on selection change in FieldMenu_1. |
---|
| 1871 | %----------------------------------------------------- |
---|
| 1872 | function FieldMenu_1_Callback(hObject, eventdata, handles) |
---|
| 1873 | field_str=get(handles.FieldMenu_1,'String'); |
---|
| 1874 | field_index=get(handles.FieldMenu_1,'Value'); |
---|
| 1875 | field=field_str{field_index}; |
---|
| 1876 | if isequal(field,'get_field...') |
---|
| 1877 | hget_field=findobj(allchild(0),'name','get_field_1'); |
---|
| 1878 | if ~isempty(hget_field) |
---|
| 1879 | delete(hget_field) |
---|
| 1880 | end |
---|
| 1881 | hseries=get(handles.FieldMenu,'parent'); |
---|
| 1882 | SeriesData=get(hseries,'UserData'); |
---|
| 1883 | filename=SeriesData.CurrentInputFile_1; |
---|
| 1884 | if exist(filename,'file') |
---|
| 1885 | hget_field=get_field(filename); |
---|
| 1886 | set(hget_field,'name','get_field_1') |
---|
| 1887 | end |
---|
| 1888 | elseif isequal(field,'more...') |
---|
| 1889 | str=calc_field; |
---|
| 1890 | [ind_answer,v] = listdlg('PromptString','Select a file:',... |
---|
| 1891 | 'SelectionMode','single',... |
---|
| 1892 | 'ListString',str); |
---|
| 1893 | % edit the choice in the fields and action menu |
---|
| 1894 | scalar=cell2mat(str(ind_answer)); |
---|
| 1895 | update_menu(handles.FieldMenu_1,scalar) |
---|
| 1896 | end |
---|
| 1897 | |
---|
| 1898 | |
---|
| 1899 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1900 | %detect the chosen series of files and check their date of modification: |
---|
| 1901 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1902 | %INPUT: |
---|
| 1903 | %num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 1904 | %num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 1905 | %num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ ) |
---|
| 1906 | %num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ) |
---|
| 1907 | %OTHER INPUTS given by the structure Series |
---|
| 1908 | function GUI_input=check_files(num_i1_cell,num_i2_cell,num_j1_cell,num_j2_cell,Series) %(filecell,filecell_1,num_i,num_j,vel_type,field,param); |
---|
| 1909 | |
---|
| 1910 | %requests for the visibility of input windows in the GUI series (activated directly by the selection in the menu ACTION) |
---|
| 1911 | if ~exist('num_i1_cell','var') |
---|
| 1912 | GUI_input={'RootPath';'many';...%nbre of possible input series (options 'on'/'two'/'many', default:'one') |
---|
| 1913 | 'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default) |
---|
| 1914 | 'RootFile';'on';... %root input file name ('on' by default) |
---|
| 1915 | 'FileExt';'on';... %input file extension ('on' by default) |
---|
| 1916 | 'NomType';'on';...%type of file indexing ('on' by default) |
---|
| 1917 | 'NbSlice';'on'; ...%nbre of slices ('off' by default) |
---|
| 1918 | %'VelTypeMenu';'on';...% menu for selecting the velocity type (civ1,..) 'off' by default) |
---|
| 1919 | %'FieldMenu';'on';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
| 1920 | %'CoordType';'on'...%can use a transform function 'off' by default |
---|
| 1921 | %'GetObject';'on'...%can use projection object ,'off' by default |
---|
| 1922 | %'GetMask';'on'...%can use mask option ,'off' by default |
---|
| 1923 | %'PARAMETER'; options: name of the user defined parameter',repeat a line for each parameter |
---|
| 1924 | ''}; |
---|
| 1925 | return %exit the function |
---|
| 1926 | end |
---|
| 1927 | |
---|
| 1928 | %standard parameters for waitbar and STOP action (do not modify) |
---|
| 1929 | hseries=guidata(Series.hseries);%handles of the GUI series |
---|
| 1930 | WaitbarPos=get(hseries.waitbar_frame,'Position'); |
---|
| 1931 | |
---|
| 1932 | %%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1933 | |
---|
| 1934 | % number of slices |
---|
| 1935 | NbSlice=str2num(get(hseries.NbSlice,'String')); |
---|
| 1936 | if isempty(NbSlice) |
---|
| 1937 | NbSlice=1; |
---|
| 1938 | end |
---|
| 1939 | NbSlice_name=num2str(NbSlice); |
---|
| 1940 | if isequal(NbSlice,[]),NbSlice=1; end; %default |
---|
| 1941 | |
---|
| 1942 | % number of views |
---|
| 1943 | count=0; |
---|
| 1944 | testcell=iscell(Series.RootFile); |
---|
| 1945 | if ~testcell |
---|
| 1946 | Series.RootPath={Series.RootPath}; |
---|
| 1947 | Series.RootFile={Series.RootFile}; |
---|
| 1948 | Series.SubDir={Series.SubDir}; |
---|
| 1949 | Series.FileExt={Series.FileExt}; |
---|
| 1950 | Series.NomType={Series.NomType}; |
---|
| 1951 | end |
---|
| 1952 | nbview=length(Series.RootFile); |
---|
| 1953 | for iview=1:nbview |
---|
| 1954 | filebase=fullfile(Series.RootPath{iview},Series.RootFile{iview});%root file name |
---|
| 1955 | if testcell |
---|
| 1956 | num_i1=num_i1_cell{iview}; num_i2=num_i2_cell{iview}; num_j1=num_j1_cell{iview}; num_j2=num_j2_cell{iview}; |
---|
| 1957 | else |
---|
| 1958 | num_i1=num_i1_cell; num_i2=num_i2_cell; num_j1=num_j1_cell; num_j2=num_j2_cell; |
---|
| 1959 | end |
---|
| 1960 | siz=size(num_i1); |
---|
| 1961 | nbfield2=siz(1); %nb of consecutive fields at each level(burst |
---|
| 1962 | nbfield=siz(1)*siz(2); |
---|
| 1963 | nbfield=floor(nbfield/(nbfield2*NbSlice));%total number of i indexes (adjusted to an integer number of slices) |
---|
| 1964 | if isequal(lower(Series.FileExt{iview}),'.avi') |
---|
| 1965 | info=aviinfo([filebase Series.FileExt{iview}]); |
---|
| 1966 | message{1}=info.Filename; |
---|
| 1967 | message{2}=info.FileModDate; |
---|
| 1968 | message{3}=[num2str(info.FramesPerSecond) ' frames/s ']; |
---|
| 1969 | message{4}=info.ImageType; |
---|
| 1970 | message{5}=[' compression' info.VideoCompression]; |
---|
| 1971 | message{6}=[ 'quality ' num2str(info.Quality)]; |
---|
| 1972 | Tabchar=message; |
---|
| 1973 | else |
---|
| 1974 | datnum=[]; |
---|
| 1975 | Tabchar={}; |
---|
| 1976 | %LOOP ON SLICES |
---|
| 1977 | for i_slice=1:NbSlice |
---|
| 1978 | for ifield=1:nbfield |
---|
| 1979 | indselect(:,ifield)=((ifield-1)*NbSlice+(i_slice-1))*nbfield2+[1:nbfield2]';%selected indices on the list of files of a slice |
---|
| 1980 | end |
---|
| 1981 | for index=1:nbfield*nbfield2 |
---|
| 1982 | stopstate=get(hseries.RUN,'BusyAction'); |
---|
| 1983 | if isequal(stopstate,'queue')% enable STOP command |
---|
| 1984 | update_waitbar(hseries.waitbar,WaitbarPos,index/(nbfield*nbfield2)) |
---|
| 1985 | ifile=indselect(index); |
---|
| 1986 | file=... |
---|
| 1987 | name_generator(filebase,num_i1(ifile),num_j1(ifile),Series.FileExt{iview},Series.NomType{iview},1,num_i2(ifile),num_j2(ifile),Series.SubDir{iview}); |
---|
| 1988 | [Path,Name,ext]=fileparts(file); |
---|
| 1989 | detect=exist(file,'file'); % check the existence of the file |
---|
| 1990 | if detect==0 |
---|
| 1991 | count=count+1; |
---|
| 1992 | lastfield='not found'; |
---|
| 1993 | else |
---|
| 1994 | datfile=dir(file); |
---|
| 1995 | datnum(ifile)=datenum(datfile.date); |
---|
| 1996 | filefound(ifile)={datfile.name}; |
---|
| 1997 | lastfield=''; |
---|
| 1998 | if isequal(Series.FileExt{iview},'.nc') || isequal(Series.FileExt{iview},'.cdf') |
---|
| 1999 | % check the content netcdf file |
---|
| 2000 | Data=nc2struct(file,'ListGlobalAttribute','patch2','fix2','civ2','patch','fix','absolut_time_T0','hart'); |
---|
| 2001 | if ~isempty(Data.patch2) && isequal(Data.patch2,1) |
---|
| 2002 | lastfield='patch2'; |
---|
| 2003 | elseif ~isempty(Data.fix2) && isequal(Data.fix2,1) |
---|
| 2004 | lastfield='fix2'; |
---|
| 2005 | elseif ~isempty(Data.civ2) && isequal(Data.civ2,1); |
---|
| 2006 | lastfield='civ2'; |
---|
| 2007 | elseif ~isempty(Data.patch) && isequal(Data.patch,1); |
---|
| 2008 | lastfield='patch1'; |
---|
| 2009 | elseif ~isempty(Data.fix) && isequal(Data.fix,1); |
---|
| 2010 | lastfield='fix1'; |
---|
| 2011 | elseif ~isempty(Data.absolut_time_T0) && ~isempty(Data.hart) |
---|
| 2012 | lastfield='civ1'; |
---|
[12] | 2013 | end |
---|
[2] | 2014 | end |
---|
| 2015 | end |
---|
| 2016 | Tabchar(1,i_slice)={['slice #' num2str(i_slice)]}; |
---|
| 2017 | Tabchar(index+1,i_slice)={[file ' ' lastfield]}; |
---|
| 2018 | end |
---|
| 2019 | end |
---|
| 2020 | end |
---|
| 2021 | if isempty(datnum) |
---|
| 2022 | if NbSlice>1 |
---|
| 2023 | message=['no set of ' num2str(NbSlice) ' (NbSlices) files found']; |
---|
| 2024 | else |
---|
| 2025 | message='no file found'; |
---|
| 2026 | end |
---|
| 2027 | else |
---|
| 2028 | datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files |
---|
| 2029 | [first,ind]=min(datnum); |
---|
| 2030 | [last,indlast]=max(datnum); |
---|
| 2031 | message={['oldest modification: ' cell2mat(filefound(ind)) ' : ' datestr(first)];... |
---|
| 2032 | ['latest modification: ' cell2mat(filefound(indlast)) ' : ' datestr(last)]}; |
---|
| 2033 | end |
---|
| 2034 | if ~isempty(Tabchar) |
---|
| 2035 | Tabchar=reshape(Tabchar,NbSlice*(nbfield*nbfield2+1),1); |
---|
| 2036 | end |
---|
| 2037 | end |
---|
| 2038 | hfig=figure(iview); |
---|
| 2039 | clf |
---|
| 2040 | if iview>1 |
---|
| 2041 | pos=get(iview-1,'Position'); |
---|
| 2042 | pos(1)=pos(1)+(iview-1)*pos(1)/nbview; |
---|
| 2043 | set(hfig,'Position',pos) |
---|
| 2044 | end |
---|
| 2045 | set(hfig,'name',['view= ' num2str(iview)]) |
---|
| 2046 | |
---|
| 2047 | h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', @ncbrowser_uvmat); |
---|
| 2048 | hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message); |
---|
| 2049 | end |
---|
| 2050 | %---------------------------------------------------- |
---|
| 2051 | % determine the list of index pairs of processing file |
---|
| 2052 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 2053 | function [num_i1,num_i2,num_j1,num_j2,num_i_out,num_j_out]=find_file_indices(num_i,num_j,ind_shift,NomType,mode) |
---|
| 2054 | num_i1=num_i;% set of first image numbers by default |
---|
| 2055 | num_i2=num_i; |
---|
| 2056 | num_j1=num_j; |
---|
| 2057 | num_j2=num_j; |
---|
| 2058 | num_i_out=num_i; |
---|
| 2059 | num_j_out=num_j; |
---|
| 2060 | if isequal (NomType,'_i1-i2_j') |isequal (NomType,'_i1-i2') |
---|
| 2061 | num_i1_line=num_i+ind_shift(3);% set of first image numbers |
---|
| 2062 | num_i2_line=num_i+ind_shift(4); |
---|
| 2063 | % adjust the first and last field number |
---|
| 2064 | indsel=find(num_i1_line >= 1); |
---|
| 2065 | num_i_out=num_i(indsel); |
---|
| 2066 | num_i1_line=num_i1_line(indsel); |
---|
| 2067 | num_i2_line=num_i2_line(indsel); |
---|
| 2068 | num_j1=meshgrid(num_j,ones(size(num_i1_line))); |
---|
| 2069 | num_j2=meshgrid(num_j,ones(size(num_i1_line))); |
---|
| 2070 | [xx,num_i1]=meshgrid(num_j,num_i1_line); |
---|
| 2071 | [xx,num_i2]=meshgrid(num_j,num_i2_line); |
---|
| 2072 | elseif isequal (NomType,'_i_j1-j2') || isequal (NomType,'#_ab') |
---|
| 2073 | if isequal(mode,'bursts') %case of bursts (png_old or png_2D) |
---|
| 2074 | num_j1=ind_shift(1)*ones(size(num_i)); |
---|
| 2075 | num_j2=ind_shift(2)*ones(size(num_i)); |
---|
| 2076 | else |
---|
| 2077 | num_j1_col=num_j+ind_shift(1);% set of first image numbers |
---|
| 2078 | num_j2_col=num_j+ind_shift(2); |
---|
| 2079 | % adjust the first field number |
---|
| 2080 | indsel=find((num_j1_col >= 1)); |
---|
| 2081 | num_j_out=num_j(indsel); |
---|
| 2082 | num_j1_col=num_j1_col(indsel); |
---|
| 2083 | num_j2_col=num_j2_col(indsel); |
---|
| 2084 | [num_i1,num_j1]=meshgrid(num_i,num_j1_col); |
---|
| 2085 | [num_i2,num_j2]=meshgrid(num_i,num_j2_col); |
---|
| 2086 | end |
---|
| 2087 | end |
---|
| 2088 | |
---|
| 2089 | |
---|
| 2090 | %---------------------------------------------------------------------- |
---|
| 2091 | % --- make average on a series of files |
---|
| 2092 | %---------------------------------------------------------------------- |
---|
| 2093 | %INPUT: |
---|
| 2094 | %num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 2095 | %num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 2096 | %num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ ) |
---|
| 2097 | %num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ) |
---|
| 2098 | %OTHER INPUTS given by the structure Series |
---|
| 2099 | % Series.Time: |
---|
| 2100 | % Series.GeometryCalib: |
---|
| 2101 | function GUI_input=aver_stat(num_i1,num_i2,num_j1,num_j2,Series) |
---|
| 2102 | %requests for the visibility of input windows in the GUI series (activated directly by the selection in the menu ACTION) |
---|
| 2103 | if ~exist('num_i1','var') |
---|
| 2104 | GUI_input={'RootPath';'two';...%nbre of possible input series (options 'on'/'two'/'many', default:'one') |
---|
| 2105 | 'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default) |
---|
| 2106 | 'RootFile';'on';... %root input file name ('on' by default) |
---|
| 2107 | 'FileExt';'on';... %input file extension ('on' by default) |
---|
| 2108 | 'NomType';'on';...%type of file indexing ('on' by default) |
---|
| 2109 | 'NbSlice';'on'; ...%nbre of slices ('off' by default) |
---|
| 2110 | 'VelTypeMenu';'two';...% menu for selecting the velocity type (options 'off'/'one'/'two', 'off' by default) |
---|
| 2111 | 'FieldMenu';'two';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
| 2112 | 'CoordType'; 'on';...%can use a transform function |
---|
| 2113 | 'GetObject';'on';...%can use projection object(option 'off'/'one'/'two', |
---|
| 2114 | %'GetMask';'on'...%can use mask option |
---|
| 2115 | %'PARAMETER'; %options: name of the user defined parameter',repeat a line for each parameter |
---|
| 2116 | ''}; |
---|
| 2117 | return |
---|
| 2118 | end |
---|
| 2119 | |
---|
| 2120 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 2121 | hseries=guidata(Series.hseries);%handles of the GUI series |
---|
| 2122 | WaitbarPos=get(hseries.waitbar_frame,'Position'); |
---|
| 2123 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 2124 | |
---|
| 2125 | %root input file and type |
---|
| 2126 | if ~iscell(Series.RootPath)% case of a single input field series |
---|
| 2127 | num_i1={num_i1};num_j1={num_j1};num_i2={num_i2};num_j2={num_j2}; |
---|
| 2128 | RootPath={Series.RootPath}; |
---|
| 2129 | RootFile={Series.RootFile}; |
---|
| 2130 | SubDir={Series.SubDir}; |
---|
| 2131 | FileExt={Series.FileExt}; |
---|
| 2132 | NomType={Series.NomType}; |
---|
| 2133 | else |
---|
| 2134 | RootPath=Series.RootPath; |
---|
| 2135 | RootFile=Series.RootFile; |
---|
| 2136 | SubDir=Series.SubDir; |
---|
| 2137 | NomType=Series.NomType; |
---|
| 2138 | FileExt=Series.FileExt; |
---|
| 2139 | end |
---|
| 2140 | ext=FileExt{1}; |
---|
| 2141 | form=imformats(ext([2:end]));%test valid Matlab image formats |
---|
| 2142 | testima=0; |
---|
| 2143 | if ~isempty(form)||isequal(lower(ext),'.avi')||isequal(lower(ext),'.vol') |
---|
| 2144 | testima(1)=1; |
---|
| 2145 | end |
---|
| 2146 | if length(FileExt)>=2 |
---|
| 2147 | ext_1=FileExt{2}; |
---|
| 2148 | form=imformats(ext_1([2:end]));%test valid Matlab image formats |
---|
| 2149 | if ~isempty(form)||isequal(lower(ext_1),'.avi')||isequal(lower(ext_1),'.vol') |
---|
| 2150 | testima(2)=1; |
---|
| 2151 | end |
---|
| 2152 | if testima(2)~=testima(1) |
---|
| 2153 | msgbox_uvmat('ERROR','images and netcdf files cannot be compared') |
---|
| 2154 | return |
---|
| 2155 | end |
---|
| 2156 | end |
---|
| 2157 | |
---|
| 2158 | %Number of input series: this function accepts two input file series at most (then it operates on the difference of fields) |
---|
| 2159 | nbview=length(RootPath); |
---|
| 2160 | if nbview>2 |
---|
| 2161 | RootPath=RootPath(1:2); |
---|
| 2162 | set(hseries.RootPath,'String',RootPath) |
---|
| 2163 | SubDir=SubDir(1:2); |
---|
| 2164 | set(hseries.SubDir,'String',SubDir) |
---|
| 2165 | RootFile=RootFile(1:2); |
---|
| 2166 | set(hseries.RootFile,'String',RootFile) |
---|
| 2167 | NomType=NomType(1:2); |
---|
| 2168 | FileExt=FileExt(1:2); |
---|
| 2169 | set(hseries.FileExt,'String',FileExt) |
---|
| 2170 | nbview=2; |
---|
| 2171 | end |
---|
| 2172 | hhh=which('mmreader'); |
---|
| 2173 | for iview=1:nbview |
---|
| 2174 | test_movie(iview)=0; |
---|
| 2175 | if ~isequal(hhh,'')&& mmreader.isPlatformSupported() |
---|
| 2176 | if isequal(lower(FileExt{iview}),'.avi') |
---|
| 2177 | MovieObject{iview}=mmreader(fullfile(RootPath{iview},[RootFile{iview} FileExt{iview}])); |
---|
| 2178 | test_movie(iview)=1; |
---|
| 2179 | end |
---|
| 2180 | end |
---|
| 2181 | end |
---|
| 2182 | |
---|
| 2183 | % number of slices |
---|
| 2184 | NbSlice=str2num(get(hseries.NbSlice,'String')); |
---|
| 2185 | if isempty(NbSlice) |
---|
| 2186 | NbSlice=1; |
---|
| 2187 | end |
---|
| 2188 | NbSlice_name=num2str(NbSlice); |
---|
| 2189 | |
---|
| 2190 | % Field and velocity type (the same for the two views) |
---|
| 2191 | Field_str=get(hseries.FieldMenu,'String'); |
---|
| 2192 | FieldName=[]; %default |
---|
| 2193 | testfield=get(hseries.FieldMenu,'Visible'); |
---|
| 2194 | if isequal(testfield,'on') |
---|
| 2195 | val=get(hseries.FieldMenu,'Value'); |
---|
| 2196 | FieldName=Field_str(val);%the same set of fields for all views |
---|
| 2197 | if isequal(FieldName,{'get_field...'}) |
---|
| 2198 | hget_field=findobj(allchild(0),'name','get_field');%find the get_field... GUI |
---|
| 2199 | if length(hget_field)>1 |
---|
| 2200 | delete(hget_field(2:end)) |
---|
| 2201 | elseif isempty(hget_field) |
---|
| 2202 | filename=... |
---|
| 2203 | name_generator(fullfile(RootPath{1},RootFile{1}),num_i1{1}(1),num_j1{1}(1),FileExt{1},NomType{1},1,num_i2{1}(1),num_j2{1}(1),SubDir{1}); |
---|
| 2204 | get_field(filename); |
---|
| 2205 | return |
---|
| 2206 | end |
---|
[12] | 2207 | %hhget_field=guidata(hget_field);%handles of GUI elements in get_field |
---|
| 2208 | SubField=read_get_field(hget_field); %read the names of the variables to plot in the get_field GUI |
---|
[2] | 2209 | end |
---|
| 2210 | end |
---|
| 2211 | %detect whether the two files are 'images' or 'netcdf' |
---|
| 2212 | testima=0; |
---|
| 2213 | testvol=0; |
---|
| 2214 | testcivx=0; |
---|
| 2215 | testnc=0; |
---|
| 2216 | FileExt=get(hseries.FileExt,'String'); |
---|
| 2217 | % test_movie=0; |
---|
| 2218 | for iview=1:nbview |
---|
| 2219 | ext=FileExt{iview}; |
---|
| 2220 | form=imformats(ext([2:end])); |
---|
| 2221 | if isequal(lower(ext),'.vol') |
---|
| 2222 | testvol=testvol+1; |
---|
| 2223 | elseif ~isempty(form)||isequal(lower(ext),'.avi')% if the extension corresponds to an image format recognized by Matlab |
---|
| 2224 | testima=testima+1; |
---|
| 2225 | elseif isequal(ext,'.nc') |
---|
| 2226 | testnc=testnc+1; |
---|
| 2227 | end |
---|
| 2228 | end |
---|
| 2229 | if testvol |
---|
| 2230 | msgbox_uvmat('ERROR','volume images not implemented yet') |
---|
| 2231 | return |
---|
| 2232 | end |
---|
| 2233 | if testnc~=nbview && testima~=nbview && testvol~=nbview |
---|
| 2234 | msgbox_uvmat('ERROR','compare two image series or two netcdf files with the same fields as input') |
---|
| 2235 | return |
---|
| 2236 | end |
---|
| 2237 | if ~isequal(FieldName,{'get_field...'}) |
---|
| 2238 | testcivx=testnc; |
---|
| 2239 | end |
---|
| 2240 | |
---|
| 2241 | if testcivx |
---|
| 2242 | VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
| 2243 | VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
| 2244 | VelType{1}=VelType_str{VelType_val}; |
---|
| 2245 | if nbview==2 |
---|
| 2246 | VelType_str=get(hseries.VelTypeMenu_1,'String'); |
---|
| 2247 | VelType_val=get(hseries.VelTypeMenu_1,'Value'); |
---|
| 2248 | VelType{2}=VelType_str{VelType_val}; |
---|
| 2249 | end |
---|
| 2250 | end |
---|
| 2251 | |
---|
| 2252 | %Calibration data and timing: read the ImaDoc files |
---|
| 2253 | mode=''; %default |
---|
| 2254 | timecell={}; |
---|
| 2255 | itime=0; |
---|
| 2256 | NbSlice_calib={}; |
---|
| 2257 | for iview=1:nbview%Loop on views |
---|
| 2258 | XmlData{iview}=[];%default |
---|
| 2259 | filebase{iview}=fullfile(RootPath{iview},RootFile{iview}); |
---|
| 2260 | if exist([filebase{iview} '.xml'],'file') |
---|
| 2261 | [XmlData{iview},error]=imadoc2struct([filebase{iview} '.xml']); |
---|
| 2262 | if isfield(XmlData{iview},'Time') |
---|
| 2263 | itime=itime+1; |
---|
| 2264 | timecell{itime}=XmlData{iview}.Time; |
---|
| 2265 | end |
---|
| 2266 | if isfield(XmlData{iview},'GeometryCalib') && isfield(XmlData{iview}.GeometryCalib,'SliceCoord') |
---|
| 2267 | NbSlice_calib{iview}=size(XmlData{iview}.GeometryCalib.SliceCoord,1);%nbre of slices for Zindex in phys transform |
---|
| 2268 | if ~isequal(NbSlice_calib{iview},NbSlice_calib{1}) |
---|
| 2269 | msgbox_uvmat('WARNING','inconsistent number of Z indices for the two field series'); |
---|
| 2270 | end |
---|
| 2271 | end |
---|
| 2272 | elseif exist([filebase{iview} '.civ'],'file') |
---|
| 2273 | [error,time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([filebase{iview} '.civ']); |
---|
| 2274 | itime=itime+1; |
---|
| 2275 | timecell{itime}=time; |
---|
| 2276 | XmlData{iview}.Time=time; |
---|
| 2277 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0]; |
---|
| 2278 | GeometryCalib.Tx=0; |
---|
| 2279 | GeometryCalib.Ty=0; |
---|
| 2280 | GeometryCalib.Tz=1; |
---|
| 2281 | GeometryCalib.dpx=1; |
---|
| 2282 | GeometryCalib.dpy=1; |
---|
| 2283 | GeometryCalib.sx=1; |
---|
| 2284 | GeometryCalib.Cx=0; |
---|
| 2285 | GeometryCalib.Cy=0; |
---|
| 2286 | GeometryCalib.f=1; |
---|
| 2287 | GeometryCalib.kappa1=0; |
---|
| 2288 | GeometryCalib.CoordUnit='cm'; |
---|
| 2289 | XmlData{iview}.GeometryCalib=GeometryCalib; |
---|
| 2290 | if error==1 |
---|
| 2291 | msgbox_uvmat('WARNING','inconsistent number of fields in the .civ file'); |
---|
| 2292 | end |
---|
| 2293 | end |
---|
| 2294 | end |
---|
| 2295 | |
---|
| 2296 | %check coincidence in time |
---|
| 2297 | multitime=0; |
---|
| 2298 | if length(timecell)==0 |
---|
| 2299 | time=[]; |
---|
| 2300 | elseif length(timecell)==1 |
---|
| 2301 | time=timecell{1}; |
---|
| 2302 | elseif length(timecell)>1 |
---|
| 2303 | multitime=1; |
---|
| 2304 | for icell=1:length(timecell) |
---|
| 2305 | if ~isequal(size(timecell{icell}),size(timecell{1})) |
---|
| 2306 | msgbox_uvmat('WARNING','inconsistent time array dimensions in ImaDoc fields, the time for the first series is used') |
---|
| 2307 | time=timecell{1}; |
---|
| 2308 | multitime=0; |
---|
| 2309 | break |
---|
| 2310 | end |
---|
| 2311 | end |
---|
| 2312 | end |
---|
| 2313 | if multitime |
---|
| 2314 | for icell=1:length(timecell) |
---|
| 2315 | time(icell,:,:)=timecell{icell}; |
---|
| 2316 | end |
---|
| 2317 | diff_time=max(max(diff(time))); |
---|
| 2318 | if diff_time>0 |
---|
| 2319 | msgbox_uvmat('WARNING',['times of series differ by more than ' num2str(diff_time)]) |
---|
| 2320 | end |
---|
| 2321 | end |
---|
| 2322 | if size(time,2) < num_i2{1}(end) || size(time,3) < num_j2{1}(end)% ime array absent or too short in ImaDoc xml file' |
---|
| 2323 | time=[]; |
---|
| 2324 | end |
---|
| 2325 | |
---|
| 2326 | % Root name of output files (TO GENERALISE FOR TWO INPUT SERIES) |
---|
| 2327 | filebasesub=fullfile(RootPath{1},SubDir{1},RootFile{1}); |
---|
| 2328 | if isempty(SubDir{1}) % create a subdirectory '/mean' |
---|
| 2329 | subdir_result='mean'; |
---|
| 2330 | % filebasemean=fullfile(RootPath{1},subdir_result); |
---|
| 2331 | if ~exist(fullfile(RootPath{1},subdir_result),'dir') |
---|
| 2332 | dircur=pwd; %record current working directory |
---|
| 2333 | cd(RootPath{1})% goes to the iamge directory |
---|
| 2334 | [m1,m2,m3]=mkdir(subdir_result); |
---|
| 2335 | if ~isequal(m2,'') |
---|
| 2336 | msgbox_uvmat('CONFIRMATION',m2);%error message for directory creation |
---|
| 2337 | end |
---|
| 2338 | cd(dircur) %back to the initial working directory |
---|
| 2339 | end |
---|
| 2340 | filebase_out=filebase{1}; |
---|
| 2341 | else |
---|
| 2342 | subdir_result=SubDir{1}; |
---|
| 2343 | filebase_out=[filebase{1} '_mean'];% output root name obtained by adding the suffix _mean to the input |
---|
| 2344 | end |
---|
| 2345 | %output nomtype (to generalise) |
---|
| 2346 | NomTypeOut=nomtype2pair(NomType{1},num_i2{end}(end)-num_i1{1}(1),num_j2{end}(end)-num_j1{1}(1)); |
---|
| 2347 | |
---|
| 2348 | if NbSlice==1 |
---|
| 2349 | filebase_out=[filebasesub '_mean']; |
---|
| 2350 | else |
---|
| 2351 | filebase_out=[filebasesub '_' NbSlice_name 'mean']; |
---|
| 2352 | answeryes=questdlg({['will make average in ' num2str(NbSlice) ' slices'];['results stored as files ' filebase_out ' ...']}); |
---|
| 2353 | if ~isequal(answeryes,'Yes') |
---|
| 2354 | return |
---|
| 2355 | end |
---|
| 2356 | end |
---|
| 2357 | |
---|
| 2358 | % coordinate transform or other user defined transform |
---|
| 2359 | Coord_menu=get(hseries.CoordType,'String'); |
---|
| 2360 | menu_val=get(hseries.CoordType,'Value'); |
---|
| 2361 | usrfct=Coord_menu{menu_val}; |
---|
| 2362 | testfct=~isequal(usrfct,''); |
---|
| 2363 | |
---|
| 2364 | %slice loop |
---|
| 2365 | siz=size(num_i1{1}); |
---|
| 2366 | lengthtot=siz(1)*siz(2); |
---|
| 2367 | nbfield=floor(lengthtot/(siz(1)*NbSlice));%total number of i indexes (adjusted to an integer number of slices) |
---|
| 2368 | nbfield_slice=nbfield*siz(1);% number of fields per slice |
---|
| 2369 | |
---|
| 2370 | for i_slice=1:NbSlice |
---|
| 2371 | S=0; %initiate the image sum S |
---|
| 2372 | nbfiles=0; |
---|
| 2373 | nbmissing=0; |
---|
| 2374 | %averaging loop |
---|
| 2375 | for ifile=i_slice:NbSlice:lengthtot |
---|
| 2376 | stopstate=get(hseries.RUN,'BusyAction'); |
---|
| 2377 | if isequal(stopstate,'queue') % enable STOP command |
---|
| 2378 | update_waitbar(hseries.waitbar,WaitbarPos,ifile/lengthtot) |
---|
| 2379 | for iview=1:nbview |
---|
| 2380 | [filename]=... |
---|
| 2381 | name_generator(filebase{iview},num_i1{iview}(ifile),num_j1{iview}(ifile),FileExt{iview},NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile),SubDir{iview}); |
---|
| 2382 | if testima |
---|
| 2383 | Data{iview}.ListVarName={'A'}; |
---|
| 2384 | Data{iview}.AName='image'; |
---|
| 2385 | if test_movie(iview) |
---|
| 2386 | Data{iview}.A=read(MovieObject{iview},num_i1{iview}(ifile)); |
---|
| 2387 | else |
---|
| 2388 | Data{iview}.A=read_image(filename,NomType{iview},num_i1{iview}(ifile));% read the image, num2 is the counter for avi files |
---|
| 2389 | end |
---|
| 2390 | Atype{iview}=class(Data{iview}.A); |
---|
| 2391 | Data{iview}.A=double(Data{iview}.A); |
---|
| 2392 | elseif testcivx |
---|
| 2393 | [Data{iview},VelTypeOut]=read_civxdata(filename,FieldName,VelType); |
---|
| 2394 | else |
---|
| 2395 | [Data{iview},var_detect]=nc2struct(filename,SubField.ListVarName); %read the corresponding input data |
---|
| 2396 | Data{iview}.VarAttribute=SubField.VarAttribute; |
---|
| 2397 | end |
---|
| 2398 | if isfield(Data{iview},'Txt') |
---|
| 2399 | msgbox_uvmat('ERROR',['error of input reading: ' Data{iview}.Txt]) |
---|
| 2400 | return |
---|
| 2401 | end |
---|
| 2402 | end |
---|
| 2403 | % coordinate transform (or other user defined transform) |
---|
| 2404 | if ~isequal(Series.CoordType,'') |
---|
| 2405 | % z index |
---|
| 2406 | if ~isempty(NbSlice_calib) |
---|
| 2407 | Data{iview}.ZIndex=mod(num_i1{iview}(ifile)-1,NbSlice_calib{1})+1;%Zindex for phys transform |
---|
| 2408 | end |
---|
| 2409 | if nbview==2 |
---|
| 2410 | [Data{1},Data{2}]=feval(Series.CoordType,Data{1},XmlData{1},Data{2},XmlData{2}); |
---|
| 2411 | if isempty(Data{2}) |
---|
| 2412 | Data(2)=[]; |
---|
| 2413 | end |
---|
| 2414 | else |
---|
| 2415 | Data{1}=feval(Series.CoordType,Data{1},XmlData); |
---|
| 2416 | end |
---|
| 2417 | end |
---|
| 2418 | if testcivx |
---|
| 2419 | Data{iview}=calc_field(FieldName,Data{iview});%calculate field (vort..) |
---|
| 2420 | end |
---|
| 2421 | if length(Data)==2 |
---|
| 2422 | [Field,errormsg]=sub_field(Data{1},Data{2}); %substract the two fields |
---|
| 2423 | if ~isempty(errormsg) |
---|
| 2424 | msgbox_uvmat('ERROR',['error in aver_stat/sub_field:' errormsg]) |
---|
| 2425 | return |
---|
| 2426 | end |
---|
| 2427 | else |
---|
| 2428 | Field=Data{1}; |
---|
| 2429 | end |
---|
| 2430 | if isfield(Series,'ProjObject') |
---|
| 2431 | [Field,errormsg]=proj_field(Field,Series.ProjObject); |
---|
| 2432 | if ~isempty(errormsg) |
---|
| 2433 | msgbox_uvmat('ERROR',['error in aver_stat/proj_field:' errormsg]) |
---|
| 2434 | return |
---|
| 2435 | end |
---|
| 2436 | end |
---|
| 2437 | nbfiles=nbfiles+1; |
---|
| 2438 | if nbfiles==1 %first field |
---|
| 2439 | time_1=[]; |
---|
| 2440 | if isfield(Field,'Time') |
---|
| 2441 | time_1=Field.Time(1); |
---|
| 2442 | end |
---|
| 2443 | DataMean=Field;%default |
---|
| 2444 | else |
---|
| 2445 | for ivar=1:length(Field.ListVarName) |
---|
| 2446 | VarName=Field.ListVarName{ivar}; |
---|
| 2447 | eval(['sizmean=size(DataMean.' VarName ');']); |
---|
| 2448 | eval(['siz=size(Field.' VarName ');']); |
---|
| 2449 | if ~isequal(siz,sizmean) |
---|
| 2450 | warndlg_uvmat(['unequal size of input field ' VarName ', need to interpolate on a grid'],'WARNING') |
---|
| 2451 | nbmissing=nbmissing+1; |
---|
| 2452 | break |
---|
| 2453 | else |
---|
| 2454 | eval(['DataMean.' VarName '=DataMean.' VarName '+ Field.' VarName ';']); % update the sum |
---|
| 2455 | end |
---|
| 2456 | end |
---|
| 2457 | end |
---|
| 2458 | % else |
---|
| 2459 | % nbmissing=nbmissing+1; |
---|
| 2460 | % end |
---|
| 2461 | end |
---|
| 2462 | end %end averaging loop |
---|
| 2463 | for ivar=1:length(Field.ListVarName) |
---|
| 2464 | VarName=Field.ListVarName{ivar}; |
---|
| 2465 | eval(['DataMean.' VarName '=DataMean.' VarName '/nbfiles;']); % normalize the mean |
---|
| 2466 | end |
---|
| 2467 | if nbmissing~=0 |
---|
| 2468 | msgbox_uvmat('WARNING',[num2str(nbmissing) ' input files are missing or skipted']) |
---|
| 2469 | end |
---|
| 2470 | if isempty(time) % time read from files prevails |
---|
| 2471 | time_end=[]; |
---|
| 2472 | if isfield(Field,'Time') |
---|
| 2473 | time_end=Field.Time(1);%last time read |
---|
| 2474 | if ~isempty(time_1) |
---|
| 2475 | DataMean.Time=time_1; |
---|
| 2476 | DataMean.Time_end=time_end; |
---|
| 2477 | end |
---|
| 2478 | end |
---|
| 2479 | else % time from ImaDoc prevails |
---|
| 2480 | DataMean.Time=time(1,num_i1{1}(1),num_j1{1}(1)); |
---|
| 2481 | DataMean.Time_end=time(end,num_i1{end}(end),num_j1{end}(end)); |
---|
| 2482 | end |
---|
| 2483 | |
---|
| 2484 | %writing the result file |
---|
| 2485 | if testima |
---|
| 2486 | if NbSlice==1 |
---|
| 2487 | [filemean]=name_generator(filebase_out,num_i1{1}(1),num_j1{1}(1),'.png',NomTypeOut,1,num_i2{end}(end),num_j2{end}(end)); |
---|
| 2488 | else % label the file number by the slice # for simplicity |
---|
| 2489 | [filemean]=name_generator(filebase_out,i_slice,1,'.png','_i'); |
---|
| 2490 | end |
---|
| 2491 | if exist(filemean,'file') |
---|
| 2492 | backupfile=filemean; |
---|
| 2493 | testexist=2; |
---|
| 2494 | while testexist==2 |
---|
| 2495 | backupfile=[backupfile(1:end-4) '~.png']; |
---|
| 2496 | testexist=exist(backupfile,'file'); |
---|
| 2497 | end |
---|
| 2498 | [success,message]=copyfile(filemean,backupfile);%make backup |
---|
| 2499 | if ~isequal(success,1) |
---|
| 2500 | msgbox_uvmat('ERROR',['previous file result ' filemean ' already exists, problem in backup']) |
---|
| 2501 | return |
---|
| 2502 | end |
---|
| 2503 | end |
---|
| 2504 | if isequal(Atype{1},'uint16') |
---|
| 2505 | imwrite(uint16(DataMean.A),filemean,'BitDepth',16); |
---|
| 2506 | else |
---|
| 2507 | imwrite(uint8(DataMean.A),filemean,'BitDepth',8); |
---|
| 2508 | end |
---|
| 2509 | display([filemean ' written']); |
---|
| 2510 | else %determine global attributes |
---|
| 2511 | DataMean.ListGlobalAttribute=[DataMean.ListGlobalAttribute {Series.Action}]; |
---|
| 2512 | ActionKey='Action'; |
---|
| 2513 | while isfield(DataMean,ActionKey) |
---|
| 2514 | ActionKey=[ActionKey '_1']; |
---|
| 2515 | end |
---|
| 2516 | eval(['DataMean.' ActionKey '=Series.Action;']) |
---|
| 2517 | DataMean.ListGlobalAttribute=[DataMean.ListGlobalAttribute {ActionKey}]; |
---|
| 2518 | if isfield(DataMean,'Time') |
---|
| 2519 | DataMean.ListGlobalAttribute=[DataMean.ListGlobalAttribute {'Time','Time_end'}]; |
---|
| 2520 | end |
---|
| 2521 | if NbSlice==1 |
---|
| 2522 | filemean=name_generator(filebase_out,num_i1{1}(1),num_j1{1}(1),'.nc',NomTypeOut,1,num_i2{end}(end),num_j2{end}(end)); |
---|
| 2523 | else % label the file number by the slice # for simplicity |
---|
| 2524 | [filemean]=name_generator(filebase_out,i_slice,1,'.nc','_i'); |
---|
| 2525 | end |
---|
| 2526 | if exist(filemean,'file') |
---|
| 2527 | backupfile=filemean; |
---|
| 2528 | testexist=2; |
---|
| 2529 | while testexist==2 |
---|
| 2530 | backupfile=[backupfile(1:end-3) '~.nc']; |
---|
| 2531 | testexist=exist(backupfile,'file'); |
---|
| 2532 | end |
---|
| 2533 | [success,message]=copyfile(filemean,backupfile);%make backup |
---|
| 2534 | if ~isequal(success,1) |
---|
| 2535 | msgbox_uvmat('ERROR',['previous file result ' filemean ' already exists, problem in backup']) |
---|
| 2536 | display(['previous file result ' filemean ' already exists, problem in backup']) |
---|
| 2537 | return |
---|
| 2538 | end |
---|
| 2539 | end |
---|
| 2540 | errormsg=struct2nc(filemean,DataMean); %save result file |
---|
| 2541 | if isempty(errormsg) |
---|
| 2542 | display([filemean ' written']); |
---|
| 2543 | else |
---|
| 2544 | msgbox_uvmat('ERROR',['error in writting result file: ' errormsg]) |
---|
| 2545 | display(errormsg) |
---|
| 2546 | end |
---|
| 2547 | end |
---|
| 2548 | end |
---|
| 2549 | hget_field=findobj(allchild(0),'name','get_field');%find the get_field... GUI |
---|
| 2550 | delete(hget_field) |
---|
[12] | 2551 | 'TEST' |
---|
[2] | 2552 | uvmat(filemean) |
---|
| 2553 | |
---|
| 2554 | |
---|
| 2555 | % %---------------------------------------------------------------------- |
---|
| 2556 | % % --makes a time averaged velocity field |
---|
| 2557 | % %---------------------------------------------------------------------- |
---|
| 2558 | % function aver_vel(num_i1,num_i2,num_j1,num_j2,Series) |
---|
| 2559 | % %handles of the GUI series |
---|
| 2560 | % |
---|
| 2561 | % hseries=guidata(Series.hseries);%handles of the GUI series |
---|
| 2562 | % WaitbarPos=get(hseries.waitbar_frame,'Position'); |
---|
| 2563 | % Field_list=get(hseries.FieldMenu,'String'); |
---|
| 2564 | % val=get(hseries.FieldMenu,'Value'); |
---|
| 2565 | % FieldName=Field_list{val(1)}; |
---|
| 2566 | % set(hseries.FieldMenu,'Value',val(1))% select only one input field |
---|
| 2567 | % if isequal(FieldName,'get_field...') |
---|
| 2568 | % hget_field=findobj(allchild(0),'Name','get_field');%find the get_field... GUI |
---|
| 2569 | % end |
---|
| 2570 | % %root input file and type |
---|
| 2571 | % RootPath=get(hseries.RootPath,'String'); |
---|
| 2572 | % SubDir=get(hseries.SubDir,'String'); |
---|
| 2573 | % RootFile=get(hseries.RootFile,'String'); |
---|
| 2574 | % %NomType=get(hseries.NomType,'String'); |
---|
| 2575 | % NomType=Series.NomType; |
---|
| 2576 | % FileExt=get(hseries.FileExt,'String'); |
---|
| 2577 | % ext=FileExt{1}; |
---|
| 2578 | % VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
| 2579 | % VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
| 2580 | % VelType{1}=VelType_str{VelType_val}; |
---|
| 2581 | % |
---|
| 2582 | % time=0; %default |
---|
| 2583 | % % number of slices |
---|
| 2584 | % NbSlice=str2num(get(hseries.NbSlice,'String')); |
---|
| 2585 | % if isempty(NbSlice) |
---|
| 2586 | % NbSlice=1; |
---|
| 2587 | % end |
---|
| 2588 | % NbSlice_name=num2str(NbSlice); |
---|
| 2589 | % filebase=fullfile(RootPath{1},RootFile{1}); |
---|
| 2590 | % Calib=[]; |
---|
| 2591 | % if exist([filebase '.xml'],'file') |
---|
| 2592 | % %[error,Heading,nom_type_read,ext_ima_read,time_imadoc,TimeUnit,mode,NbSlice,npx,npy,Calib]=read_imadoc([filebase '.xml']); |
---|
| 2593 | % [XmlData,warntext]=imadoc2struct([filebase '.xml']); |
---|
| 2594 | % end |
---|
| 2595 | % if NbSlice==1 |
---|
| 2596 | % filebase_mean=[filebase '_mean']; %root name for the result |
---|
| 2597 | % else |
---|
| 2598 | % filebase_mean=[filebase '_' NbSlice_name 'mean']; %root name for the results |
---|
| 2599 | % answeryes=questdlg({['will make average in ' num2str(NbSlice) ' slices'];['results stored as files ' filebase_mean ' ...']}); |
---|
| 2600 | % if ~isequal(answeryes,'Yes') |
---|
| 2601 | % return |
---|
| 2602 | % end |
---|
| 2603 | % end |
---|
| 2604 | % siz=size(num_i1); |
---|
| 2605 | % nbfield2=siz(1); %nb of consecutive fields at each level(burst) |
---|
| 2606 | % lengthtot=siz(1)*siz(2); |
---|
| 2607 | % nbfield=floor(lengthtot/(nbfield2*NbSlice));%total number of i indexes (adjusted to an integer number of slices) |
---|
| 2608 | % nbfield_slice=nbfield*nbfield2;% number of fields per slice |
---|
| 2609 | % %projection object |
---|
| 2610 | % GridX=[]; |
---|
| 2611 | % GridY=[]; |
---|
| 2612 | % if isfield(Series,'sethandles') |
---|
| 2613 | % Series.ProjObject=read_set_object(Series.sethandles); |
---|
| 2614 | % if isfield(Series.ProjObject,'Style') |
---|
| 2615 | % answeryes=questdlg({['statistics on field series projected on ' Series.ProjObject.Style]}); |
---|
| 2616 | % if ~isequal(answeryes,'Yes') |
---|
| 2617 | % return |
---|
| 2618 | % end |
---|
| 2619 | % end |
---|
| 2620 | % end |
---|
| 2621 | % |
---|
| 2622 | % %LOOP ON SLICES |
---|
| 2623 | % for i_slice=1:NbSlice |
---|
| 2624 | % %select the series of image indices at the level islice |
---|
| 2625 | % for ifield=1:nbfield |
---|
| 2626 | % indselect(:,ifield)=((ifield-1)*NbSlice+(i_slice-1))*nbfield2+[1:nbfield2]';%selected indices on the list of files of a slice |
---|
| 2627 | % end |
---|
| 2628 | % %name of result file |
---|
| 2629 | % [filemean,idetect]=... |
---|
| 2630 | % name_generator(filebase_mean,num_i1(i_slice),num_j1(1),Series.FileExt{1},'_i1-i2_j1-j2',1,num_i2(i_slice+nbfield_slice*NbSlice-1),num_j2(end),Series.SubDir{1}); |
---|
| 2631 | % |
---|
| 2632 | % % field=get(handles.civ1,'UserData');%read current selected field type (civ1,civ2...) |
---|
| 2633 | % itime=0; |
---|
| 2634 | % dt=[]; |
---|
| 2635 | % %LOOP ON FIELDS IN A SLICE |
---|
| 2636 | % test_interpolate=0;%default |
---|
| 2637 | % for index=1:nbfield*nbfield2 |
---|
| 2638 | % ifile=indselect(index); |
---|
| 2639 | % stopstate=get(hseries.RUN,'BusyAction'); |
---|
| 2640 | % if isequal(stopstate,'queue')% enable STOP command |
---|
| 2641 | % update_waitbar(hseries.waitbar,WaitbarPos,ifile/(nbfield*nbfield2)) |
---|
| 2642 | % %name of the current file |
---|
| 2643 | % [filename,idetect]=name_generator(filebase,num_i1(ifile),num_j1(ifile),Series.FileExt{1},Series.NomType{1},1,num_i2(ifile),num_j2(ifile),Series.SubDir{1}); |
---|
| 2644 | % %read input file |
---|
| 2645 | % itime=itime+1; |
---|
| 2646 | % if isequal(FieldName,'get_field...') |
---|
| 2647 | % hhget_field=guidata(hget_field);%handles of GUI elements in get_field |
---|
| 2648 | % hObject=0; |
---|
| 2649 | % eventdata=0; |
---|
| 2650 | % SubField=get_field('read_var_names',hObject,eventdata,hhget_field); %read the names of the variables to plot in the get_field GUI |
---|
| 2651 | % [Data,var_detect]=nc2struct(filename,SubField.ListVarName); %read input data |
---|
| 2652 | % time(itime)=itime; |
---|
| 2653 | % dt=1; |
---|
| 2654 | % Calib_read=[]; |
---|
| 2655 | % else |
---|
| 2656 | % [nb_coord,nb_dim,Civ,CivStage,timeread,Data,VelTypeOut,Calib_read]=read_ncfield(filename,VelType{1});%reading the first file |
---|
| 2657 | % time(itime)=timeread; |
---|
| 2658 | % if isequal(Civ,1) |
---|
| 2659 | % Data.CoordType='px';%test for pixel coordinates |
---|
| 2660 | % if isequal(itime,1) |
---|
| 2661 | % dt=Data.dt; |
---|
| 2662 | % elseif ~isequal(Data.dt,dt) |
---|
| 2663 | % warndlg_uvmat('series with non constant dt, need phys coordinates','ERROR') |
---|
| 2664 | % return |
---|
| 2665 | % end |
---|
| 2666 | % end |
---|
| 2667 | % end |
---|
| 2668 | % %increment the detected fields, skip the others |
---|
| 2669 | % if idetect==0 |
---|
| 2670 | % warndlg_uvmat(['input file ' filename ' not found'],'ERROR') |
---|
| 2671 | % %A FAIRE STOCKER LE RESULT ACTUEL S'IL EXISTE |
---|
| 2672 | % end |
---|
| 2673 | % % itime=itime+1; |
---|
| 2674 | % % time(itime)=timeread; |
---|
| 2675 | % |
---|
| 2676 | % %coordinate transform |
---|
| 2677 | % if isempty(Calib) |
---|
| 2678 | % Calib=Calib_read;%use Calib from xml file in priority, then Calib from the current file |
---|
| 2679 | % end |
---|
| 2680 | % if ~isequal(Series.CoordType,'') |
---|
| 2681 | % Data=feval(Series.CoordType,Data,Calib); |
---|
| 2682 | % end |
---|
| 2683 | % %projection on object if defined |
---|
| 2684 | % if isfield(Series,'ProjObject'); |
---|
| 2685 | % Data=proj_field(Data,Series.ProjObject); |
---|
| 2686 | % if isequal(itime,1)%use the positions on the first field for the whole series, ou utiliser grille |
---|
| 2687 | % if isfield(Data,'Txt')%display error message |
---|
| 2688 | % warndlg(Data.Txt,'ERROR') |
---|
| 2689 | % return |
---|
| 2690 | % end |
---|
| 2691 | % end |
---|
| 2692 | % else%remove false vectors and interpolate on the positions of the first field |
---|
| 2693 | % Data=document_field(Data); |
---|
| 2694 | % Data.Style='plane'; |
---|
| 2695 | % end |
---|
| 2696 | % %%%%%%%%% initiate the average at the first iteration: check list and structure of variables |
---|
| 2697 | % if ifile==i_slice%first field in the slice |
---|
| 2698 | % testfalse=0; |
---|
| 2699 | % ListIndex={}; |
---|
| 2700 | % testnewcell=1; |
---|
| 2701 | % %group the variables (fields of 'Data') in cells of variables with the same dimensions |
---|
| 2702 | % [DimVarIndex,CellVarIndex]=find_field_indices(Data); |
---|
| 2703 | % VarIndex=CellVarIndex{1}; % ONLY THE FIRST VAR GROUP IS AVERAGED |
---|
| 2704 | % DimIndex=Data.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell) |
---|
| 2705 | % MeanData=Data;%transfer heading |
---|
| 2706 | % MeanData.Time=[time(1) time(end)]; |
---|
| 2707 | % MeanData.Action=Series.Action;%name of the processing programme |
---|
| 2708 | % MeanData.ListDimName=Data.ListDimName(DimIndex);%name of dimension |
---|
| 2709 | % MeanData.DimValue=Data.DimValue(DimIndex);%values of dimension (nbre of vectors) |
---|
| 2710 | % MeanData.ListVarName=Data.ListVarName; |
---|
| 2711 | % MeanData.VarDimIndex=Data.VarDimIndex; |
---|
| 2712 | % MeanData.ListVarAttribute={'Role'};%list of variable attribute names A FAIRE: transferer les autres attributs |
---|
| 2713 | % testsum=ones(size(VarIndex)); |
---|
| 2714 | % indexfalse=0; |
---|
| 2715 | % CoordName={}; |
---|
| 2716 | % indexremove=[]; |
---|
| 2717 | % if isfield(Data,'Role') % look for coordinate and flag variables |
---|
| 2718 | % for ivar=1:length(VarIndex) |
---|
| 2719 | % VarName=Data.ListVarName{VarIndex(ivar)}; |
---|
| 2720 | % var_role=Data.Role{VarIndex(ivar)};%'role' of the variable |
---|
| 2721 | % MeanData.Role{ivar}=var_role; |
---|
| 2722 | % if isequal(var_role,'falseflag') |
---|
| 2723 | % indexfalse=ivar; %test for false flag |
---|
| 2724 | % indexremove=ivar; |
---|
| 2725 | % FFName=VarName; |
---|
| 2726 | % testsum(ivar)=0; |
---|
| 2727 | % eval(['MeanData=rmfield(MeanData,''' VarName ''');']);%remove variable |
---|
| 2728 | % end |
---|
| 2729 | % if isequal(var_role,'warnflag') |
---|
| 2730 | % testsum(ivar)=0; %do not sum warn flag |
---|
| 2731 | % eval(['MeanData=rmfield(MeanData,''' VarName ''');']);%remove variable |
---|
| 2732 | % indexremove=[indexremove ivar]; |
---|
| 2733 | % end |
---|
| 2734 | % if isequal(var_role,'coord_x')| isequal(var_role,'coord_y')|isequal(var_role,'coord_z') |
---|
| 2735 | % eval(['MeanData.' VarName '=Data.' VarName ';']); |
---|
| 2736 | % testsum(ivar)=0; |
---|
| 2737 | % eval(['CoordName=[CoordName ''' VarName '''];']); |
---|
| 2738 | % end |
---|
| 2739 | % if testsum(ivar)~=0 |
---|
| 2740 | % eval(['MeanData.' VarName '=zeros(size(Data.' VarName '));']);%initialise sum |
---|
| 2741 | % end |
---|
| 2742 | % end |
---|
| 2743 | % end |
---|
| 2744 | % findsum=find(testsum); |
---|
| 2745 | % VarIndexSum=VarIndex(findsum);%indices of variables to sum (not coordinates nor flags) |
---|
| 2746 | % if length(CoordName)==0 |
---|
| 2747 | % if isempty(DimVarIndex)|isequal(DimVarIndex,0)% no coordinate variable for structured coordinates, prepare histograms |
---|
| 2748 | % for ilist=1:length(VarIndexSum) |
---|
| 2749 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
| 2750 | % eval(['MeanData=rmfield(MeanData,''' VarName ''');']);%remove variable |
---|
| 2751 | % indexremove=[indexremove ilist]; |
---|
| 2752 | % eval(['[MeanData.' VarName 'hist,MeanData.' VarName 'val]=hist(Data.' VarName ',100);']);%make histo |
---|
| 2753 | % eval(['sizhist=size(MeanData.' VarName 'hist);']) |
---|
| 2754 | % if sizhist(1)==1 |
---|
| 2755 | % eval(['MeanData.' VarName 'hist=MeanData.' VarName 'hist'';']) |
---|
| 2756 | % end |
---|
| 2757 | % eval(['maxval=max(MeanData.' VarName 'val);']); |
---|
| 2758 | % eval(['minval=min(MeanData.' VarName 'val);']); |
---|
| 2759 | % dC(ilist)=(maxval-minval)/100;%size of the histogram bin |
---|
| 2760 | % end |
---|
| 2761 | % else |
---|
| 2762 | % % icoord=0; |
---|
| 2763 | % % for ilist=1:length(DimVarIndex) |
---|
| 2764 | % % VarDim=Data.ListVarName{DimVarIndex(ilist)}; |
---|
| 2765 | % % icoord=icoord+1; |
---|
| 2766 | % % % eval(['Coord{' num2str(icord) '}=[' CoordName ''' VarName ''']']); |
---|
| 2767 | % % %eval(['Data.' CoordName{icoord} '=Data.' CoordName{icoord} '(indsel);']); |
---|
| 2768 | % % end |
---|
| 2769 | % end |
---|
| 2770 | % end |
---|
| 2771 | % if ~isempty(indexremove) |
---|
| 2772 | % MeanData.ListVarName(VarIndex(indexremove))=[]; |
---|
| 2773 | % MeanData.VarDimIndex(VarIndex(indexremove))=[]; |
---|
| 2774 | % if isfield(MeanData,'Role')%generaliser aus autres attributs |
---|
| 2775 | % MeanData.Role(VarIndex(indexremove))=[]; |
---|
| 2776 | % end |
---|
| 2777 | % end |
---|
| 2778 | % % END OF INITIALISATION |
---|
| 2779 | % |
---|
| 2780 | % end |
---|
| 2781 | % |
---|
| 2782 | % % A FAIRE: regular grid if coord_x undefined |
---|
| 2783 | % if indexfalse~=0 %suppress false data |
---|
| 2784 | % eval(['testexist=isfield(Data,''' FFName ''');']) |
---|
| 2785 | % if testexist |
---|
| 2786 | % eval(['indsel=find(Data.' FFName '==0);']); |
---|
| 2787 | % for icoord=1:length(CoordName) |
---|
| 2788 | % eval(['Data.' CoordName{icoord} '=Data.' CoordName{icoord} '(indsel);']); |
---|
| 2789 | % end |
---|
| 2790 | % end |
---|
| 2791 | % end |
---|
| 2792 | % for ilist=1:length(VarIndexSum) |
---|
| 2793 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
| 2794 | % if indexfalse~=0 & testexist |
---|
| 2795 | % eval(['Data.' VarName '=Data.' VarName '(indsel);']); |
---|
| 2796 | % end |
---|
| 2797 | % if length(CoordName)==0%no variable use dfor unstructured coordinates |
---|
| 2798 | % if isempty(DimVarIndex)|isequal(DimVarIndex,0)% no coordinate variable for structured coordinates |
---|
| 2799 | % % %update histogram with the current field #ifile |
---|
| 2800 | % str_left=['[MeanData.' VarName 'val,MeanData.' VarName 'hist]=']; |
---|
| 2801 | % str_right=['hist_update(MeanData.' VarName 'val,MeanData.' VarName 'hist,Data.' VarName ',dC(ilist));']; |
---|
| 2802 | % eval([str_left str_right]);%update global histo |
---|
| 2803 | % else |
---|
| 2804 | % %INTERPOLER |
---|
| 2805 | % |
---|
| 2806 | % eval(['MeanData.' VarName '=MeanData.' VarName '+Data.' VarName ';']);%increment sum%CAS x,y change |
---|
| 2807 | % end |
---|
| 2808 | % else |
---|
| 2809 | % if length(CoordName)==2 |
---|
| 2810 | % eval(['test_interp= ~isequal(Data.' CoordName{1} ',MeanData.' CoordName{1} ... |
---|
| 2811 | % ')|~isequal(Data.' CoordName{2} ',MeanData.' CoordName{2} ');']) |
---|
| 2812 | % if test_interp |
---|
| 2813 | % eval(['Data.' VarName '=griddata_uvmat(Data.' CoordName{1} ',Data.' CoordName{2}... |
---|
| 2814 | % ',Data.' VarName ',MeanData.' CoordName{1} ',MeanData.' CoordName{2} ');']); |
---|
| 2815 | % test_interpolate=1; |
---|
| 2816 | % end |
---|
| 2817 | % end |
---|
| 2818 | % eval(['MeanData.' VarName '=MeanData.' VarName '+Data.' VarName ';']);%increment sum |
---|
| 2819 | % end |
---|
| 2820 | % end |
---|
| 2821 | % end |
---|
| 2822 | % end |
---|
| 2823 | % if length(CoordName)~=0 | ~isequal(DimVarIndex,0)% no coordinate variable for structured coordinates |
---|
| 2824 | % for ilist=1:length(VarIndexSum) |
---|
| 2825 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
| 2826 | % eval(['MeanData.' VarName '=MeanData.' VarName '/itime;']);%normalize sum by the number of fields |
---|
| 2827 | % end |
---|
| 2828 | % else |
---|
| 2829 | % MeanData.NbDim=1; |
---|
| 2830 | % MeanData.ListDimName={}; |
---|
| 2831 | % MeanData.DimValue=[]; |
---|
| 2832 | % for ilist=1:length(VarIndexSum) |
---|
| 2833 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
| 2834 | % MeanData.ListVarName=[MeanData.ListVarName {[VarName 'val']} {[VarName 'hist']}]; |
---|
| 2835 | % MeanData.VarDimIndex=[MeanData.VarDimIndex {[ilist]} {[ilist]}]; |
---|
| 2836 | % MeanData.ListDimName=[MeanData.ListDimName {[VarName 'val']}]; |
---|
| 2837 | % eval(['MeanData.DimValue=[MeanData.DimValue length(MeanData.' VarName 'val)];']); |
---|
| 2838 | % end |
---|
| 2839 | % end |
---|
| 2840 | % figure |
---|
| 2841 | % haxes=axes; |
---|
| 2842 | % plot_field(MeanData,haxes)%plot the resulting average |
---|
| 2843 | % % change variable names for consitency with civ1 data (need to generalize these programs) |
---|
| 2844 | % if length(MeanData.ListVarName) >= 4 & isequal(MeanData.ListVarName(1:4), {'X' 'Y' 'U' 'V'}) |
---|
| 2845 | % MeanData.ListGlobalAttribute={'nb_coord','nb_dim','dt','absolut_time_T0','pixcmx','pixcmy','hart','civ','fix'}; |
---|
| 2846 | % MeanData.nb_coord=2; |
---|
| 2847 | % MeanData.nb_dim=2; |
---|
| 2848 | % MeanData.dt=1; |
---|
| 2849 | % MeanData.absolut_time_T0=0; |
---|
| 2850 | % MeanData.pixcmx=1; %pix per cm (1 by default) |
---|
| 2851 | % MeanData.pixcmy=1; %pix per cm (1 by default) |
---|
| 2852 | % MeanData.hart=0; |
---|
| 2853 | % if isequal(Data.CoordType,'px') |
---|
| 2854 | % MeanData.civ=1; |
---|
| 2855 | % else |
---|
| 2856 | % MeanData.civ=0; |
---|
| 2857 | % end |
---|
| 2858 | % MeanData.fix=0; |
---|
| 2859 | % MeanData.ListVarName(1:4)={'vec_X' 'vec_Y' 'vec_U' 'vec_V'}; |
---|
| 2860 | % MeanData.vec_X=MeanData.X; |
---|
| 2861 | % MeanData.vec_Y=MeanData.Y; |
---|
| 2862 | % MeanData.vec_U=MeanData.U; |
---|
| 2863 | % MeanData.vec_V=MeanData.V; |
---|
| 2864 | % end |
---|
| 2865 | % error=struct2nc(filemean,MeanData); %save result file |
---|
| 2866 | % if isequal(error,0) |
---|
| 2867 | % if test_interpolate |
---|
| 2868 | % 'fields interpolated to the positions of the first one' |
---|
| 2869 | % end |
---|
| 2870 | % [filemean ' written'] |
---|
| 2871 | % else |
---|
| 2872 | % warndlg_uvmat(error,'ERROR') |
---|
| 2873 | % end |
---|
| 2874 | % end |
---|
| 2875 | |
---|
| 2876 | %---------------------------------------------------------------------- |
---|
| 2877 | % --project fields on a projection object (e. g. a regular grid), possibly |
---|
| 2878 | % merge several fields |
---|
| 2879 | %---------------------------------------------------------------------- |
---|
| 2880 | %INPUT: |
---|
| 2881 | %num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 2882 | %num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 2883 | %num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ ) |
---|
| 2884 | %num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ) |
---|
| 2885 | %OTHER INPUTS given by the structure Series |
---|
| 2886 | function GUI_input=merge_proj(num_i1,num_i2,num_j1,num_j2,Series); |
---|
| 2887 | |
---|
| 2888 | %requests for the visibility of input windows in the GUI series (activated directly by the selection in the menu ACTION) |
---|
| 2889 | if ~exist('num_i1','var') |
---|
| 2890 | GUI_input={'RootPath';'two';...%nbre of possible input series (options 'on'/'two'/'many', default:'one') |
---|
| 2891 | 'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default) |
---|
| 2892 | 'RootFile';'on';... %root input file name ('on' by default) |
---|
| 2893 | 'FileExt';'on';... %input file extension ('on' by default) |
---|
| 2894 | 'NomType';'on';...%type of file indexing ('on' by default) |
---|
| 2895 | 'NbSlice';'on'; ...%nbre of slices ('off' by default) |
---|
| 2896 | 'VelTypeMenu';'one';...% menu for selecting the velocity type (civ1,..) options 'off'/'one'/'two', 'off' by default) |
---|
| 2897 | 'FieldMenu';'one';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
| 2898 | 'CoordType';'on';...%can use a transform function 'off' by default |
---|
| 2899 | 'GetObject';'on';...%can use projection object ,'off' by default |
---|
| 2900 | %'GetMask';'on'...%can use mask option ,'off' by default |
---|
| 2901 | %'PARAMETER'; options: name of the user defined parameter',repeat a line for each parameter |
---|
| 2902 | ''}; |
---|
| 2903 | return %exit the function |
---|
| 2904 | end |
---|
| 2905 | |
---|
| 2906 | %------------------------------------------------- |
---|
| 2907 | hseries=guidata(Series.hseries);%handles of the GUI series |
---|
| 2908 | WaitbarPos=get(hseries.waitbar_frame,'Position'); %positiopn of waitbar frame |
---|
| 2909 | %------------------------------------------------- |
---|
| 2910 | |
---|
| 2911 | %numbers of view fields (nbre of inputs in RootPath) |
---|
| 2912 | testcell=iscell(Series.RootFile); |
---|
| 2913 | if ~testcell |
---|
| 2914 | Series.RootPath={Series.RootPath}; |
---|
| 2915 | Series.RootFile={Series.RootFile}; |
---|
| 2916 | Series.SubDir={Series.SubDir}; |
---|
| 2917 | Series.FileExt={Series.FileExt}; |
---|
| 2918 | Series.NomType={Series.NomType}; |
---|
| 2919 | num_i1={num_i1}; |
---|
| 2920 | num_i2={num_i2}; |
---|
| 2921 | num_j1={num_j1}; |
---|
| 2922 | num_j2={num_j2}; |
---|
| 2923 | end |
---|
| 2924 | nbview=length(Series.RootFile);%number of views (file series to merge) |
---|
| 2925 | nbfield=size(num_i1{1},1)*size(num_i1{1},2);%number of fields in the time series |
---|
| 2926 | transform=Series.CoordType; % field transform function |
---|
| 2927 | hhh=which('mmreader'); |
---|
| 2928 | for iview=1:nbview |
---|
| 2929 | test_movie(iview)=0; |
---|
| 2930 | if ~isequal(hhh,'')&& mmreader.isPlatformSupported() |
---|
| 2931 | if isequal(lower(FileExt{iview}),'.avi') |
---|
| 2932 | MovieObject{iview}=mmreader(fullfile(RootPath{iview},[RootFile{iview} FileExt{iview}])); |
---|
| 2933 | test_movie(iview)=1; |
---|
| 2934 | end |
---|
| 2935 | end |
---|
| 2936 | end |
---|
| 2937 | |
---|
| 2938 | %Calibration data and timing: read the ImaDoc files |
---|
| 2939 | mode=''; %default |
---|
| 2940 | timecell={}; |
---|
| 2941 | itime=0; |
---|
| 2942 | NbSlice_calib={}; %test for z index |
---|
| 2943 | for iview=1:nbview%Loop on views |
---|
| 2944 | XmlData{iview}=[];%default |
---|
| 2945 | filebase{iview}=fullfile(Series.RootPath{iview},Series.RootFile{iview}); |
---|
| 2946 | if exist([filebase{iview} '.xml'],'file') |
---|
| 2947 | [XmlData{iview},error]=imadoc2struct([filebase{iview} '.xml']); |
---|
| 2948 | if isfield(XmlData{iview},'Time') |
---|
| 2949 | itime=itime+1; |
---|
| 2950 | timecell{itime}=XmlData{iview}.Time; |
---|
| 2951 | end |
---|
| 2952 | if isfield(XmlData{iview},'GeometryCalib') && isfield(XmlData{iview}.GeometryCalib,'SliceCoord') |
---|
| 2953 | NbSlice_calib{iview}=size(XmlData{iview}.GeometryCalib.SliceCoord,1); |
---|
| 2954 | if ~isequal(NbSlice_calib{iview},NbSlice_calib{1}) |
---|
| 2955 | msgbox_uvmat('WARNING','inconsistent number of Z indices for the two field series'); |
---|
| 2956 | end |
---|
| 2957 | end |
---|
| 2958 | elseif exist([filebase{iview} '.civ'],'file') |
---|
| 2959 | [error,time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([filebase{iview} '.civ']); |
---|
| 2960 | itime=itime+1; |
---|
| 2961 | timecell{itime}=time; |
---|
| 2962 | XmlData{iview}.Time=time; |
---|
| 2963 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0]; |
---|
| 2964 | GeometryCalib.Tx=0; |
---|
| 2965 | GeometryCalib.Ty=0; |
---|
| 2966 | GeometryCalib.Tz=1; |
---|
| 2967 | GeometryCalib.dpx=1; |
---|
| 2968 | GeometryCalib.dpy=1; |
---|
| 2969 | GeometryCalib.sx=1; |
---|
| 2970 | GeometryCalib.Cx=0; |
---|
| 2971 | GeometryCalib.Cy=0; |
---|
| 2972 | GeometryCalib.f=1; |
---|
| 2973 | GeometryCalib.kappa1=0; |
---|
| 2974 | GeometryCalib.CoordUnit='cm'; |
---|
| 2975 | XmlData{iview}.GeometryCalib=GeometryCalib; |
---|
| 2976 | if error==1 |
---|
| 2977 | msgbox_uvmat('WARNING','inconsistent number of fields in the .civ file'); |
---|
| 2978 | end |
---|
| 2979 | end |
---|
| 2980 | end |
---|
| 2981 | |
---|
| 2982 | %check coincidence in time |
---|
| 2983 | multitime=0; |
---|
| 2984 | if length(timecell)==0 |
---|
| 2985 | time=[]; |
---|
| 2986 | elseif length(timecell)==1 |
---|
| 2987 | time=timecell{1}; |
---|
| 2988 | elseif length(timecell)>1 |
---|
| 2989 | multitime=1; |
---|
| 2990 | for icell=1:length(timecell) |
---|
| 2991 | if ~isequal(size(timecell{icell}),size(timecell{1})) |
---|
| 2992 | msgbox_uvmat('WARNING','inconsistent time array dimensions in ImaDoc fields, the time for the first series is used') |
---|
| 2993 | time=timecell{1}; |
---|
| 2994 | multitime=0; |
---|
| 2995 | break |
---|
| 2996 | end |
---|
| 2997 | end |
---|
| 2998 | end |
---|
| 2999 | if multitime |
---|
| 3000 | for icell=1:length(timecell) |
---|
| 3001 | time(icell,:,:)=timecell{icell}; |
---|
| 3002 | end |
---|
| 3003 | diff_time=max(max(diff(time))); |
---|
| 3004 | if diff_time>0 |
---|
| 3005 | msgbox_uvmat('WARNING',['times of series differ by more than ' num2str(diff_time)]) |
---|
| 3006 | end |
---|
| 3007 | end |
---|
| 3008 | if size(time,2) < num_i2{1}(end) || size(time,3) < num_j2{1}(end)% ime array absent or too short in ImaDoc xml file' |
---|
| 3009 | time=[]; |
---|
| 3010 | end |
---|
| 3011 | |
---|
| 3012 | % Field and velocity type (the same for all views) |
---|
| 3013 | Field_str=get(hseries.FieldMenu,'String'); |
---|
| 3014 | val=get(hseries.FieldMenu,'Value'); |
---|
| 3015 | FieldName=Field_str(val);%the same set of fields for all views |
---|
| 3016 | VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
| 3017 | VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
| 3018 | VelType=VelType_str{VelType_val}; %the same for all views |
---|
| 3019 | if isequal(FieldName,'get_field...') |
---|
| 3020 | hget_field=findobj(allchild(0),'Name','get_field');%find the get_field... GUI |
---|
[12] | 3021 | % hhget_field=guidata(hget_field);%handles of GUI elements in get_field |
---|
| 3022 | SubField=get_field('read_get_field',hObject,eventdata,hget_field); %read the names of the variables to plot in the get_field GUI |
---|
| 3023 | % if isequal(get(hhget_field.menu_coord,'Visible'),'on') |
---|
| 3024 | % list_transform=get(hhget_field.menu_coord,'String'); |
---|
| 3025 | % val_list=get(hhget_field.menu_coord,'Value'); |
---|
| 3026 | % transform=list_transform{val_list}; |
---|
| 3027 | % end |
---|
[2] | 3028 | end |
---|
| 3029 | %detect whether all the files are 'images' or 'netcdf' |
---|
| 3030 | testima=0; |
---|
| 3031 | testvol=0; |
---|
| 3032 | testcivx=0; |
---|
| 3033 | testnc=0; |
---|
| 3034 | FileExt=get(hseries.FileExt,'String'); |
---|
| 3035 | for iview=1:nbview |
---|
| 3036 | ext=FileExt{iview}; |
---|
| 3037 | form=imformats(ext([2:end])); |
---|
| 3038 | if isequal(lower(ext),'.vol') |
---|
| 3039 | testvol=testvol+1; |
---|
| 3040 | elseif ~isempty(form)||isequal(lower(ext),'.avi')% if the extension corresponds to an image format recognized by Matlab |
---|
| 3041 | testima=testima+1; |
---|
| 3042 | elseif isequal(ext,'.nc') |
---|
| 3043 | testnc=testnc+1; |
---|
| 3044 | end |
---|
| 3045 | end |
---|
| 3046 | if testvol |
---|
| 3047 | msgbox_uvmat('ERROR','volume images not implemented yet') |
---|
| 3048 | return |
---|
| 3049 | end |
---|
| 3050 | if testnc~=nbview && testima~=nbview && testvol~=nbview |
---|
| 3051 | msgbox_uvmat('ERROR','need a set of images or a set of netcdf files with the same fields as input') |
---|
| 3052 | return |
---|
| 3053 | end |
---|
| 3054 | if ~isequal(FieldName,'get_field...') |
---|
| 3055 | testcivx=testnc; |
---|
| 3056 | end |
---|
| 3057 | %name of output files and directory: |
---|
| 3058 | % res_subdir=fullfile(Series.RootPath{1},[Series.SubDir{1} '_STAT']); |
---|
| 3059 | ProjectDir=fileparts(fileparts(Series.RootPath{1}));% preoject directory (GERK) |
---|
| 3060 | prompt={['result directory (in' ProjectDir ')']}; |
---|
| 3061 | RootPath=get(hseries.RootPath,'String'); |
---|
| 3062 | SubDir=get(hseries.SubDir,'String'); |
---|
| 3063 | if isequal(length(RootPath),1) |
---|
| 3064 | fulldir=RootPath{1}; |
---|
| 3065 | subdir='GRID'; |
---|
| 3066 | res_subdir=fullfile(fulldir,subdir); |
---|
| 3067 | else |
---|
| 3068 | def={fullfile(ProjectDir,'0_RESULTS')}; |
---|
| 3069 | dlgTitle='result directory'; |
---|
| 3070 | lineNo=1; |
---|
| 3071 | answer=msgbox_uvmat('INPUT_TXT',dlgTitle,def); |
---|
| 3072 | fulldir=answer{1}; |
---|
| 3073 | subdir=[]; |
---|
| 3074 | dirlist=sort(Series.RootFile); |
---|
| 3075 | for iview=1:nbview |
---|
| 3076 | if ~isempty(subdir) |
---|
| 3077 | subdir=[subdir '-']; |
---|
| 3078 | end |
---|
| 3079 | subdir=[subdir dirlist{iview}]; |
---|
| 3080 | end |
---|
| 3081 | res_subdir=fullfile(fulldir,subdir); |
---|
| 3082 | end |
---|
| 3083 | ext=FileExt{1}; |
---|
| 3084 | if ~exist(fulldir,'dir') |
---|
| 3085 | msgbox_uvmat('ERROR',['directory ' fulldir ' needs to be created']) |
---|
| 3086 | return |
---|
| 3087 | end |
---|
| 3088 | if ~exist(res_subdir,'dir') |
---|
| 3089 | dircur=pwd; |
---|
| 3090 | cd(fulldir) |
---|
| 3091 | error=mkdir(subdir); |
---|
| 3092 | cd(dircur) |
---|
| 3093 | end |
---|
| 3094 | filebasesub=fullfile(res_subdir,Series.RootFile{1}); |
---|
| 3095 | filebase_merge=fullfile(res_subdir,'merged');%root name for the merged files |
---|
| 3096 | |
---|
| 3097 | %projection object |
---|
| 3098 | if isfield(Series,'sethandles') |
---|
| 3099 | if ishandle(Series.sethandles.set_object) |
---|
| 3100 | Series.ProjObject=read_set_object(Series.sethandles); |
---|
| 3101 | if ~isfield(Series.ProjObject,'Style') |
---|
| 3102 | msgbox_uvmat('ERROR','Undefined projection object style') |
---|
| 3103 | return |
---|
| 3104 | end |
---|
| 3105 | if ~isequal(Series.ProjObject.Style,'plane') |
---|
| 3106 | msgbox_uvmat('ERROR','The projection object must be a plane') |
---|
| 3107 | return |
---|
| 3108 | end |
---|
| 3109 | end |
---|
| 3110 | end |
---|
| 3111 | |
---|
| 3112 | %MAIN LOOP |
---|
| 3113 | for ifile=1:nbfield |
---|
| 3114 | stopstate=get(hseries.RUN,'BusyAction'); |
---|
| 3115 | if isequal(stopstate,'queue')% enable STOP command from the 'series' interface |
---|
| 3116 | update_waitbar(hseries.waitbar,WaitbarPos,ifile/nbfield) |
---|
| 3117 | Amerge=0; |
---|
| 3118 | |
---|
| 3119 | %----------LOOP ON VIEWS---------------------- |
---|
| 3120 | nbtime=0; |
---|
| 3121 | for iview=1:nbview |
---|
| 3122 | %name of the current file |
---|
| 3123 | filename=name_generator(filebase{iview},num_i1{iview}(ifile),num_j1{iview}(ifile),Series.FileExt{iview},Series.NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile),SubDir{iview}); |
---|
| 3124 | if ~exist(filename,'file') |
---|
| 3125 | msgbox_uvmat('ERROR',['missing input file' filename]) |
---|
| 3126 | break |
---|
| 3127 | end |
---|
| 3128 | |
---|
| 3129 | %reading the current file |
---|
| 3130 | if testima |
---|
| 3131 | if test_movie(iview) |
---|
| 3132 | Field{iview}.A=read(MovieObject{iview},num_i1{iview}(ifile)); |
---|
| 3133 | else |
---|
| 3134 | Field{iview}.A=read_image(filename,Series.NomType{iview},num_i1{iview}(ifile)); |
---|
| 3135 | end % TODO: introduce ListVarName |
---|
| 3136 | npxy=size(Field{iview}.A); |
---|
| 3137 | Field{iview}.AX=[0.5 npxy(2)-0.5]; % coordinates of the first and last pixel centers |
---|
| 3138 | Field{iview}.AY=[npxy(1)-0.5 0.5]; |
---|
| 3139 | Field{iview}.CoordType='px'; |
---|
| 3140 | Field{iview}.AName='image'; |
---|
| 3141 | else |
---|
| 3142 | if testcivx |
---|
| 3143 | [Field{iview},VelTypeOut]=read_civxdata(filename,FieldName,VelType); |
---|
| 3144 | else |
---|
| 3145 | [Field{iview},var_detect]=nc2struct(filename,SubField.ListVarName); %read the corresponding input data |
---|
| 3146 | Field{iview}.VarAttribute=SubField.VarAttribute; |
---|
| 3147 | end |
---|
| 3148 | if isfield(Field{iview},'Time') |
---|
| 3149 | timeread(iview)=Field{iview}.Time; |
---|
| 3150 | nbtime=nbtime+1; |
---|
| 3151 | end |
---|
| 3152 | end |
---|
| 3153 | % coord transform |
---|
| 3154 | % z index |
---|
| 3155 | if ~isempty(NbSlice_calib) |
---|
| 3156 | Field{iview}.ZIndex=mod(num_i1{iview}(ifile)-1,NbSlice_calib{1})+1; |
---|
| 3157 | end |
---|
| 3158 | if ~isequal(transform,'') |
---|
| 3159 | Field{iview}=feval(Series.CoordType,Field{iview},XmlData{iview});%transform to phys if requested |
---|
| 3160 | end |
---|
| 3161 | if testcivx |
---|
| 3162 | Field{iview}=calc_field(FieldName,Field{iview}); |
---|
| 3163 | end |
---|
| 3164 | |
---|
| 3165 | %projection on object (gridded plane) |
---|
| 3166 | if isfield(Series,'ProjObject') |
---|
| 3167 | Field{iview}=proj_field(Field{iview},Series.ProjObject); |
---|
| 3168 | end |
---|
| 3169 | end |
---|
| 3170 | |
---|
| 3171 | %----------END LOOP ON VIEWS---------------------- |
---|
| 3172 | |
---|
| 3173 | %merge the nbview fields |
---|
| 3174 | MergeData=merge_field(Field); |
---|
| 3175 | if isfield(MergeData,'Txt') |
---|
| 3176 | msgbox_uvmat('ERROR',MergeData.Txt) |
---|
| 3177 | return |
---|
| 3178 | end |
---|
| 3179 | |
---|
| 3180 | % generating the name of the merged field |
---|
| 3181 | mergename=name_generator(filebase_merge,num_i1{iview}(ifile),num_j1{iview}(ifile),Series.FileExt{iview},Series.NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile)); |
---|
| 3182 | |
---|
| 3183 | % time: |
---|
| 3184 | time_i=0;%default |
---|
| 3185 | if isempty(time)% time from ImaDoc prevails |
---|
| 3186 | time_i=sum(timeread)/nbtime; |
---|
| 3187 | else |
---|
| 3188 | time_i=(time(iview,num_i1{iview}(ifile),num_j1{iview}(ifile))+time(iview,num_i2{iview}(ifile),num_j2{iview}(ifile)))/2; |
---|
| 3189 | end |
---|
| 3190 | |
---|
| 3191 | % recording the merged field |
---|
| 3192 | if testima %in case of input images an image is produced |
---|
| 3193 | if isa(MergeData.A,'uint8') |
---|
| 3194 | bitdepth=8; |
---|
| 3195 | elseif isa(MergeData.A,'uint16') |
---|
| 3196 | bitdepth=16; |
---|
| 3197 | end |
---|
| 3198 | imwrite(MergeData.A,mergename,'BitDepth',bitdepth); |
---|
| 3199 | %write xml calibration file |
---|
| 3200 | siz=size(MergeData.A); |
---|
| 3201 | npy=siz(1); |
---|
| 3202 | npx=siz(2); |
---|
| 3203 | if isfield(MergeData,'VarAttribute')&&isfield(MergeData.VarAttribute{1},'Coord_2')&&isfield(MergeData.VarAttribute{1},'Coord_1') |
---|
| 3204 | Rangx=MergeData.VarAttribute{1}.Coord_2; |
---|
| 3205 | Rangy=MergeData.VarAttribute{1}.Coord_1; |
---|
| 3206 | elseif isfield(MergeData,'AX')&& isfield(MergeData,'AY') |
---|
| 3207 | Rangx=[MergeData.AX(1) MergeData.AX(end)]; |
---|
| 3208 | Rangy=[MergeData.AY(1) MergeData.AY(end)]; |
---|
| 3209 | else |
---|
| 3210 | Rangx=[0.5 npx-0.5]; |
---|
| 3211 | Rangy=[npy-0.5 0.5];%default |
---|
| 3212 | end |
---|
| 3213 | pxcmx=(npx-1)/(Rangx(2)-Rangx(1)); |
---|
| 3214 | pxcmy=(npy-1)/(Rangy(1)-Rangy(2)); |
---|
| 3215 | T_x=-pxcmx*Rangx(1)+0.5; |
---|
| 3216 | T_y=-pxcmy*Rangy(2)+0.5; |
---|
| 3217 | GeometryCal.focal=1; |
---|
| 3218 | GeometryCal.R=[pxcmx,0,0;0,pxcmy,0;0,0,1]; |
---|
| 3219 | GeometryCal.Tx_Ty_Tz=[T_x T_y 1]; |
---|
| 3220 | ImaDoc.GeometryCalib=GeometryCal; |
---|
| 3221 | t=struct2xml(ImaDoc); |
---|
| 3222 | t=set(t,1,'name','ImaDoc'); |
---|
| 3223 | save(t,[filebase_merge '.xml']) |
---|
| 3224 | display([filebase_merge '.xml saved']) |
---|
| 3225 | else |
---|
| 3226 | MergeData.ListGlobalAttribute={'Project','InputFile_1','InputFile_end','nb_coord','nb_dim','dt','Time','civ'}; |
---|
| 3227 | MergeData.nb_coord=2; |
---|
| 3228 | MergeData.nb_dim=2; |
---|
| 3229 | MergeData.dt=1; |
---|
| 3230 | MergeData.Time=time_i; |
---|
| 3231 | error=struct2nc(mergename,MergeData); %save result file |
---|
| 3232 | if isempty(error) |
---|
| 3233 | display(['output file ' mergename ' written']) |
---|
| 3234 | else |
---|
| 3235 | display(error) |
---|
| 3236 | end |
---|
| 3237 | end |
---|
| 3238 | end |
---|
| 3239 | end |
---|
| 3240 | |
---|
| 3241 | %-------------------------------------------------------------------------- |
---|
| 3242 | function MergeData=merge_field(Data) |
---|
| 3243 | % initiate Matlab structure for physical field |
---|
| 3244 | if isempty(Data)||~iscell(Data) |
---|
| 3245 | MergeData=[]; |
---|
| 3246 | return |
---|
| 3247 | end |
---|
| 3248 | MergeData=Data{1};%default |
---|
| 3249 | error=0; |
---|
| 3250 | nbview=length(Data); |
---|
| 3251 | if nbview==1 |
---|
| 3252 | return |
---|
| 3253 | end |
---|
| 3254 | for iview=1:nbview |
---|
| 3255 | if ~isequal(MergeData.ListDimName,Data{iview}.ListDimName) |
---|
| 3256 | error=1; |
---|
| 3257 | end |
---|
| 3258 | if ~isequal(MergeData.ListVarName,Data{iview}.ListVarName) |
---|
| 3259 | error=1; |
---|
| 3260 | end |
---|
| 3261 | % if ~isequal(MergeData.VarDimIndex,Data{iview}.VarDimIndex) |
---|
| 3262 | % error=1; |
---|
| 3263 | % end |
---|
| 3264 | end |
---|
| 3265 | if error |
---|
| 3266 | MergeData.Txt='ERROR: attempt at merging fields of incompatible type'; |
---|
| 3267 | return |
---|
| 3268 | end |
---|
| 3269 | %group the variables (fields of 'FieldData') in cells of variables with the same dimensions |
---|
| 3270 | %----------------------------------------------------------------- |
---|
| 3271 | [CellVarIndex,NbDim,VarTypeCell]=find_field_indices(Data{1}); |
---|
| 3272 | %LOOP ON GROUPS OF VARIABLES SHARING THE SAME DIMENSIONS |
---|
| 3273 | % CellVarIndex=cells of variable index arrays |
---|
| 3274 | ivar_new=0; % index of the current variable in the projected field |
---|
| 3275 | icoord=0; |
---|
| 3276 | for icell=1:length(CellVarIndex) |
---|
| 3277 | if NbDim(icell)==1 |
---|
| 3278 | continue |
---|
| 3279 | end |
---|
| 3280 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName |
---|
| 3281 | VarType=VarTypeCell{icell}; |
---|
| 3282 | ivar_X=VarType.coord_x; |
---|
| 3283 | ivar_Y=VarType.coord_y; |
---|
| 3284 | ivar_FF=VarType.errorflag; |
---|
| 3285 | if isempty(ivar_X) |
---|
| 3286 | test_grid=1;%test for input data on regular grid (e.g. image)coordinates |
---|
| 3287 | else |
---|
| 3288 | if length(ivar_Y)~=1 |
---|
[12] | 3289 | warndlg_uvmat('y coordinate missing in proj_field.m','ERROR') |
---|
[2] | 3290 | return |
---|
| 3291 | end |
---|
| 3292 | test_grid=0; |
---|
| 3293 | end |
---|
[12] | 3294 | % DimIndices=Data{1}.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell) |
---|
[2] | 3295 | %case of input fields with unstructured coordinates |
---|
| 3296 | if ~test_grid |
---|
| 3297 | for ivar=VarIndex |
---|
| 3298 | VarName=MergeData.ListVarName{ivar}; |
---|
| 3299 | for iview=1:nbview |
---|
| 3300 | eval(['MergeData.' VarName '=[MergeData.' VarName '; Data{iview}.' VarName ';']) |
---|
| 3301 | end |
---|
| 3302 | end |
---|
| 3303 | %case of fields defined on a structured grid |
---|
| 3304 | else |
---|
[12] | 3305 | % DimValue=MergeData.DimValue(DimIndices);%set of dimension values |
---|
[2] | 3306 | testFF=0; |
---|
| 3307 | for iview=2:nbview |
---|
| 3308 | % if ~isequal(DimValue,Data{iview}.DimValue(DimIndices)) |
---|
| 3309 | % MergeData.Txt='ERROR: attempt at merging structured fields with different sizes'; |
---|
| 3310 | % return |
---|
| 3311 | % end |
---|
| 3312 | for ivar=VarIndex |
---|
| 3313 | VarName=MergeData.ListVarName{ivar}; |
---|
| 3314 | if isfield(MergeData,'VarAttribute') |
---|
| 3315 | if length(MergeData.VarAttribute)>=ivar && isfield(MergeData.VarAttribute{ivar},'Role') && isequal(MergeData.VarAttribute{ivar}.Role,'errorflag') |
---|
| 3316 | testFF=1; |
---|
| 3317 | end |
---|
| 3318 | end |
---|
| 3319 | eval(['MergeData.' VarName '=MergeData.' VarName '+ Data{iview}.' VarName ';']) |
---|
| 3320 | end |
---|
| 3321 | end |
---|
| 3322 | if testFF |
---|
| 3323 | nbaver=nbview-MergeData.FF; |
---|
| 3324 | indgood=find(nbaver>0); |
---|
| 3325 | for ivar=VarIndex |
---|
| 3326 | VarName=MergeData.ListVarName{ivar}; |
---|
| 3327 | eval(['MergeData.' VarName '(indgood)=double(MergeData.' VarName '(indgood))./nbaver(indgood);']) |
---|
| 3328 | end |
---|
| 3329 | else |
---|
| 3330 | for ivar=VarIndex |
---|
| 3331 | VarName=MergeData.ListVarName{ivar}; |
---|
| 3332 | eval(['MergeData.' VarName '=double(MergeData.' VarName ')./nbview;']) |
---|
| 3333 | end |
---|
| 3334 | end |
---|
| 3335 | end |
---|
| 3336 | end |
---|
| 3337 | |
---|
| 3338 | |
---|
| 3339 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 3340 | %detect the chosen series of files and check their date of modification: |
---|
| 3341 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 3342 | %INPUT: |
---|
| 3343 | %num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 3344 | %num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 3345 | %num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ ) |
---|
| 3346 | %num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ) |
---|
| 3347 | %OTHER INPUTS given by the structure Series |
---|
| 3348 | function GUI_input=clean_civ_cmx(num_i1,num_i2,num_j1,num_j2,Series) %(filecell,filecell_1,num_i,num_j,vel_type,field,param); |
---|
| 3349 | |
---|
| 3350 | %requests for the visibility of input windows in the GUI series (activated directly by the selection in the menu ACTION) |
---|
| 3351 | if ~exist('num_i1','var') |
---|
| 3352 | GUI_input={'RootPath';'many';...%nbre of possible input series (options 'on'/'two'/'many', default:'one') |
---|
| 3353 | 'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default) |
---|
| 3354 | %'RootFile';'on';... %root input file name ('on' by default) |
---|
| 3355 | %'FileExt';'on';... %input file extension ('on' by default) |
---|
| 3356 | %'NomType';'on';...%type of file indexing ('on' by default) |
---|
| 3357 | %'NbSlice';'on'; ...%nbre of slices ('off' by default) |
---|
| 3358 | %'VelTypeMenu';'one';...% menu for selecting the velocity type (civ1,..) options 'off'/'one'/'two', 'off' by default) |
---|
| 3359 | %'FieldMenu';'one';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
| 3360 | %'CoordType';'on'...%can use a transform function 'off' by default |
---|
| 3361 | %'GetObject';'on'...%can use projection object ,'off' by default |
---|
| 3362 | %'GetMask';'on'...%can use mask option ,'off' by default |
---|
| 3363 | %'PARAMETER'; options: name of the user defined parameter',repeat a line for each parameter |
---|
| 3364 | ''}; |
---|
| 3365 | return %exit the function |
---|
| 3366 | end |
---|
| 3367 | %--------------------------------------------------------- |
---|
| 3368 | hseries=guidata(Series.hseries);%handles of the GUI series |
---|
| 3369 | WaitbarPos=get(hseries.waitbar_frame,'Position'); |
---|
| 3370 | |
---|
| 3371 | %%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 3372 | message='this function will delete all files with extensions .log, .bat, .cmx,.cmx2,.errors in the input directory(ies)'; |
---|
| 3373 | answer=msgbox_uvmat('INPUT_Y-N',message); |
---|
| 3374 | if ~isequal(answer,'Yes') |
---|
| 3375 | return |
---|
| 3376 | end |
---|
| 3377 | nbdelete=0; |
---|
| 3378 | testcell=iscell(Series.RootFile); |
---|
| 3379 | if ~testcell |
---|
| 3380 | Series.RootPath={Series.RootPath}; |
---|
| 3381 | Series.RootFile={Series.RootFile}; |
---|
| 3382 | Series.SubDir={Series.SubDir}; |
---|
| 3383 | Series.FileExt={Series.FileExt}; |
---|
| 3384 | Series.NomType={Series.NomType}; |
---|
| 3385 | end |
---|
| 3386 | for iview=1:length(Series.RootFile) |
---|
| 3387 | hdir=dir(fullfile(Series.RootPath{iview},Series.SubDir{iview}));%list files |
---|
| 3388 | for ilist=1:length(hdir) |
---|
| 3389 | update_waitbar(hseries.waitbar,WaitbarPos,ilist/length(hdir)) |
---|
| 3390 | FileName=hdir(ilist).name; |
---|
| 3391 | [dd,ff,Ext]=fileparts(FileName); |
---|
| 3392 | if isequal(Ext,'.log')||isequal(Ext,'.bat')||isequal(Ext,'.cmx')||isequal(Ext,'.cmx2')|| isequal(Ext,'.errors') |
---|
| 3393 | delete(fullfile(Series.RootPath{iview},Series.SubDir{iview},FileName)) |
---|
| 3394 | nbdelete=nbdelete+1; |
---|
| 3395 | end |
---|
| 3396 | end |
---|
| 3397 | end |
---|
| 3398 | msgbox_uvmat('CONFIRMATION',['END: ' num2str(nbdelete) ' files deleted by clean_civ_cmx']) |
---|
| 3399 | |
---|
| 3400 | |
---|
| 3401 | |
---|
| 3402 | |
---|
| 3403 | |
---|
| 3404 | %----------------------------- |
---|
| 3405 | function mouse_up_gui(ggg,eventdata,handles) |
---|
| 3406 | if isequal(get(ggg,'SelectionType'),'alt') |
---|
| 3407 | display('global CurData, UserData of GUI series') |
---|
| 3408 | global CurData |
---|
| 3409 | CurData=get(ggg,'UserData'); |
---|
| 3410 | evalin('base','global CurData');%make CurData global in the workspace |
---|
| 3411 | evalin('base','CurData'); %display CurData in the workspace |
---|
| 3412 | commandwindow |
---|
| 3413 | % plot_text(CurData) |
---|
| 3414 | end |
---|
| 3415 | |
---|
| 3416 | |
---|
| 3417 | |
---|
| 3418 | % %---------------------------------------------------------------------- |
---|
| 3419 | % % --- display image movie and display time average |
---|
| 3420 | % %OBSOLETE: A SUPPRIMER |
---|
| 3421 | % %---------------------------------------------------------------------- |
---|
| 3422 | % function movie_ima(handles,filecell,filecell_1,num1,num_a,field) |
---|
| 3423 | % |
---|
| 3424 | % global hfig1 hfig2 hfig3 poscolbar |
---|
| 3425 | % global A val HIST |
---|
| 3426 | % |
---|
| 3427 | % A=[];aviobj=[]; |
---|
| 3428 | % % set(hfig1,'UserData','ima')% set the current field state to 'image' |
---|
| 3429 | % set(handles.zoom,'Value',1); %put zoom on |
---|
| 3430 | % nom_type=get(handles.file_input,'UserData'); |
---|
| 3431 | % % field=get(handles.civ1,'UserData'); |
---|
| 3432 | % % fields=field(1).fields; |
---|
| 3433 | % set(handles.speed,'Visible','On')%show slider to set movie speed |
---|
| 3434 | % set(handles.mo_speed_txt,'Visible','On') |
---|
| 3435 | % |
---|
| 3436 | % if ~isempty(filecell_1) |
---|
| 3437 | % file1=get(handles.file1_input,'UserData'); |
---|
| 3438 | % field1=file1.field; |
---|
| 3439 | % scal_type1=field1.fields; |
---|
| 3440 | % vel_type1=field1.vel_type; |
---|
| 3441 | % filename_1=filecell_1(1);% first file name in the series |
---|
| 3442 | % else |
---|
| 3443 | % filename_1=[]; |
---|
| 3444 | % end |
---|
| 3445 | % scal_type{1}=field(1).fields; |
---|
| 3446 | % vel_type{1}=field(1).vel_type; |
---|
| 3447 | % % display the first field |
---|
| 3448 | % [A,time,dt,rangx0,rangy0]=view_ima(handles,cell2mat(filecell(1)),filename_1,num1(1),num_a(1)); |
---|
| 3449 | % |
---|
| 3450 | % % calculate the histogram of the first image |
---|
| 3451 | % nxy=size(A); |
---|
| 3452 | % ndim=length(nxy); |
---|
| 3453 | % if ndim==2 % case of B/W images |
---|
| 3454 | % nxy(3)=1; |
---|
| 3455 | % end |
---|
| 3456 | % C=reshape(A,nxy(1)*nxy(2),nxy(3)); |
---|
| 3457 | % Amaxmax=double(max(max(max(A)))); |
---|
| 3458 | % Aminmin=double(min(min(min(A)))); |
---|
| 3459 | % if isa(C,'uint8')|isa(C,'uint16') |
---|
| 3460 | % C=double(C); |
---|
| 3461 | % dC=1; |
---|
| 3462 | % else |
---|
| 3463 | % dC=(Amaxmax-Aminmin)/100; |
---|
| 3464 | % end |
---|
| 3465 | % val=[Aminmin:dC:Amaxmax];% define bins for histogram |
---|
| 3466 | % HIST=hist(C,val);% initiate the global histogram |
---|
| 3467 | % if ndim==2, HIST=HIST'; end; |
---|
| 3468 | % |
---|
| 3469 | % auto_scale=get(handles.auto_scale,'Value'); |
---|
| 3470 | % min_input=str2num(get(handles.min_input,'String'));% select the minimum |
---|
| 3471 | % max_input=str2num(get(handles.scale_input,'String'));% select the max |
---|
| 3472 | % zoomstate=get(handles.zoom,'Value'); |
---|
| 3473 | % |
---|
| 3474 | % if isequal(get(handles.window_input,'String'),'avi'), |
---|
| 3475 | % basename=get(handles.file_input,'String'); |
---|
| 3476 | % prompt = {'file name';'frames per second';'frame resolution ([nbpixels x y])';'axis position relative to the frame'}; |
---|
| 3477 | % dlg_title = 'select properties of the output avi movie'; |
---|
| 3478 | % num_lines= 1; |
---|
| 3479 | % def = {[basename '_out.avi'];'5';'[1024 768]';'[0.05 0.07 0.87 0.88]'}; |
---|
| 3480 | % answer = inputdlg(prompt,dlg_title,num_lines,def); |
---|
| 3481 | % aviname=answer{1}; |
---|
| 3482 | % fps=str2num(answer{2}); |
---|
| 3483 | % if exist(aviname,'file')==2 |
---|
| 3484 | % delete(aviname); |
---|
| 3485 | % end; |
---|
| 3486 | % aviobj=avifile(aviname,'Compression','None','fps',fps); |
---|
| 3487 | % |
---|
| 3488 | % %display first view for tests |
---|
| 3489 | % figure(2); |
---|
| 3490 | % hh=get(gcf,'CurrentAxes'); |
---|
| 3491 | % if isempty(hh), |
---|
| 3492 | % hfig1=axes; |
---|
| 3493 | % else |
---|
| 3494 | % hfig1=hh; |
---|
| 3495 | % end; |
---|
| 3496 | % if isequal(filecell_1,{}) |
---|
| 3497 | % filename_1=[]; |
---|
| 3498 | % else |
---|
| 3499 | % filename_1=cell2mat(filecell_1(1)); |
---|
| 3500 | % end |
---|
| 3501 | % poscolbar=[0.93 0.15 0.02 0.7]; |
---|
| 3502 | % view_ima(handles,cell2mat(filecell(1)),filename_1,num1(1),num_a(1));% show the first field |
---|
| 3503 | % nbpix=eval(answer{3}); |
---|
| 3504 | % set(gcf,'Position',[1 1 nbpix])% resolution XVGA |
---|
| 3505 | % set(hfig1,'Position',eval(answer{4})); |
---|
| 3506 | % |
---|
| 3507 | % msgbox({'adjust figure 2 with its matlab edit menu ' ;... |
---|
| 3508 | % 'then type any keyboard key to get the avi movie as a copy of figure 2 display'}) |
---|
| 3509 | % pause; |
---|
| 3510 | % hh=colorbar; |
---|
| 3511 | % poscolbar=get(hh,'Position'); |
---|
| 3512 | % end |
---|
| 3513 | % |
---|
| 3514 | % %%%%%%%%%%%%%%%% |
---|
| 3515 | % %mask and usrdfct |
---|
| 3516 | % maskname=[]; %default |
---|
| 3517 | % if isequal(get(handles.mask_test,'Value'),1) |
---|
| 3518 | % maskbase=get(handles.mask_test,'UserData'); |
---|
| 3519 | % end |
---|
| 3520 | % % image or scalar processing programme set by user |
---|
| 3521 | % % if (get(handles.usr_fct,'Value')==1) |
---|
| 3522 | % % usrfct=get(handles.usr_fct,'UserData'); |
---|
| 3523 | % % else |
---|
| 3524 | % % usrfct=''; |
---|
| 3525 | % % end |
---|
| 3526 | % nburst=1; % nburst(1) =nbre of names in filename= nbre of bursts |
---|
| 3527 | % set(handles.text_display_1,'String',['image movie']) |
---|
| 3528 | % nbfield=length(filecell); |
---|
| 3529 | % if nbfield >1 |
---|
| 3530 | % for ifile=2:nbfield |
---|
| 3531 | % stopstate=get(handles.run0,'BusyAction'); |
---|
| 3532 | % if isequal(stopstate,'queue')% enable STOP command |
---|
| 3533 | % pausetime=1.02-get(handles.speed,'Value'); |
---|
| 3534 | % pause(pausetime) |
---|
| 3535 | % if isequal(get(handles.mask_test,'Value'),1) |
---|
| 3536 | % maskname=name_generator(maskbase,num1(ifile),1,'.png','png_series'); |
---|
| 3537 | % end |
---|
| 3538 | % if isequal(AName{1},'image') |
---|
| 3539 | % A=read_image(cell2mat(filecell(ifile)),num1(ifile),maskname);% read the first image, num2 is the counter for avi files |
---|
| 3540 | % else % read the first field from the netcdf file, imposing the pixel positions in the selected domain |
---|
| 3541 | % [A,time(ifile),dtr,rgx,rgy,vt_out,erread]=read_scalar(filecell{ifile},vel_type,scal_type,rangx0,rangy0,nxy,maskname); |
---|
| 3542 | % if erread==1; |
---|
| 3543 | % errordlg({['no spatial derivative in ' filecell{ifile}]; 'run patch first'}); return |
---|
| 3544 | % elseif erread==2; |
---|
| 3545 | % errordlg(['no field ' vel_type{1} ' in ' filecell{ifile}]); return |
---|
| 3546 | % elseif erread==3; |
---|
| 3547 | % errordlg(['scalar ' scal_type{1} ' not found in' filecell{ifile}]); return |
---|
| 3548 | % elseif erread==4; |
---|
| 3549 | % errordlg(['all points aligned in' filecell{ifile}]); return |
---|
| 3550 | % end |
---|
| 3551 | % end |
---|
| 3552 | % |
---|
| 3553 | % % read the second image |
---|
| 3554 | % if ~isempty(filecell_1) |
---|
| 3555 | % if isequal(scal_type{1},'image') |
---|
| 3556 | % A1=read_image(cell2mat(filecell_1(ifile)),num1(ifile),maskname);% read the second image, num2 is the counter for avi files |
---|
| 3557 | % Avalue_1=double(A1(indy,indx,:)); |
---|
| 3558 | % else % read the second field from the netcdf file, imposing the pixel positions in the selected domain |
---|
| 3559 | % [Avalue_1,time1(ifile),dtr,rgx,rgy,vt_out,erread]=read_scalar(filecell_1{ifile},{vel_type1},{scal_type1},rangx0,rangy0,npxy,maskname,usrfct); |
---|
| 3560 | % if erread==1; |
---|
| 3561 | % errordlg({['no spatial derivative in ' filecell_1{ifile}]; 'run patch first'}); return |
---|
| 3562 | % elseif erread==2; |
---|
| 3563 | % errordlg(['no field ' vel_type1 ' in ' filecell_1{ifile}]); return |
---|
| 3564 | % elseif erread==3; |
---|
| 3565 | % errordlg(['scalar ' scal_type1 ' not found in' filecell_1{ifile}]); return |
---|
| 3566 | % elseif erread==4; |
---|
| 3567 | % errordlg(['all points aligned in' filecell_1{ifile}]); return |
---|
| 3568 | % end |
---|
| 3569 | % end |
---|
| 3570 | % time(ifile)=(time(ifile)+time1(ifile))/2; |
---|
| 3571 | % Avalue=Avalue-Avalue_1; |
---|
| 3572 | % end |
---|
| 3573 | % set(handles.abs_time,'String',time); |
---|
| 3574 | % set(handles.field_counter,'String',num2str(num1(ifile))); |
---|
| 3575 | % set(handles.a_input,'String',num2stra(num_a(ifile),nom_type)); |
---|
| 3576 | % C=reshape(A,nxy(1)*nxy(2),nxy(3));% reshape in a vector |
---|
| 3577 | % [val,HIST]=hist_update(val,HIST,C,dC); |
---|
| 3578 | % [h,Amin,Amax]=plot_image(hfig1,rangx0,rangy0,1,scal_type{1},auto_scale,min_input,max_input,poscolbar,A); |
---|
| 3579 | % set(handles.min_input,'String',num2str(Amin));% select the minimum |
---|
| 3580 | % set(handles.scale_input,'String',num2str(Amax));% select the minimum |
---|
| 3581 | % if ~isequal(aviobj,[]), |
---|
| 3582 | % % mov=getframe(hfig1); |
---|
| 3583 | % mov=getframe(gcf); |
---|
| 3584 | % aviobj=addframe(aviobj,mov);end |
---|
| 3585 | % if (get(handles.zoom,'Value') == get(handles.zoom,'Max')),zoom on,end |
---|
| 3586 | % set(handles.field_counter,'String',num2str(num1(ifile))) |
---|
| 3587 | % % end |
---|
| 3588 | % end |
---|
| 3589 | % end |
---|
| 3590 | % end |
---|
| 3591 | % aviobj=close(aviobj); |
---|
| 3592 | % |
---|
| 3593 | % %plot global image histogram |
---|
| 3594 | % HIST=HIST/(nbfield*nxy(1)*nxy(2));% normalized by the number of points |
---|
| 3595 | % axes(hfig2) %in main window |
---|
| 3596 | % if ndim==2 |
---|
| 3597 | % plot(val,HIST) |
---|
| 3598 | % else |
---|
| 3599 | % plot(val,HIST(:,1),'r',val,HIST(:,2),'g',val,HIST(:,3),'b') |
---|
| 3600 | % end |
---|
| 3601 | % residu=1-sum(HIST,1); |
---|
| 3602 | % title(['histo, residu ' num2str(residu)]) |
---|
| 3603 | % grid on |
---|
| 3604 | % axes(hfig3) |
---|
| 3605 | % cla %clear the second histogram window |
---|
| 3606 | % |
---|
| 3607 | |
---|
| 3608 | |
---|
| 3609 | %---------------------------------------------------------------------- |
---|
| 3610 | % --- make a time series analysis |
---|
| 3611 | %---------------------------------------------------------------------- |
---|
| 3612 | %INPUT: |
---|
| 3613 | %num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 3614 | %num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
| 3615 | %num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ ) |
---|
| 3616 | %num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ) |
---|
| 3617 | %OTHER INPUTS given by the structure Series |
---|
| 3618 | function GUI_input=time_series(num_i1,num_i2,num_j1,num_j2,Series) |
---|
| 3619 | |
---|
| 3620 | %requests for the visibility of input windows in the GUI series (activated directly by the selection in the menu ACTION) |
---|
| 3621 | if ~exist('num_i1','var') |
---|
| 3622 | GUI_input={'RootPath';'two';...%nbre of possible input series (options 'on'/'two'/'many', default:'one') |
---|
| 3623 | 'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default) |
---|
| 3624 | 'RootFile';'on';... %root input file name ('on' by default) |
---|
| 3625 | 'FileExt';'on';... %input file extension ('on' by default) |
---|
| 3626 | 'NomType';'on';...%type of file indexing ('on' by default) |
---|
| 3627 | 'NbSlice';'on'; ...%nbre of slices ('off' by default) |
---|
| 3628 | 'VelTypeMenu';'two';...% menu for selecting the velocity type (civ1,..) options 'off'/'one'/'two', 'off' by default) |
---|
| 3629 | 'FieldMenu';'two';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
| 3630 | 'CoordType';'on';...%can use a transform function 'off' by default |
---|
| 3631 | 'GetObject';'on';...%can use projection object ,'off' by default |
---|
| 3632 | %'GetMask';'on'...%can use mask option ,'off' by default |
---|
| 3633 | %'PARAMETER'; options: name of the user defined parameter',repeat a line for each parameter |
---|
| 3634 | ''}; |
---|
| 3635 | return %exit the function |
---|
| 3636 | end |
---|
| 3637 | |
---|
| 3638 | %------------------------------------------------------ |
---|
| 3639 | hseries=guidata(Series.hseries);%handles in the GUI series |
---|
| 3640 | WaitbarPos=get(hseries.waitbar_frame,'Position'); %position of the waitbar frame |
---|
| 3641 | |
---|
| 3642 | %projection object |
---|
| 3643 | test_object=get(hseries.GetObject,'Value'); |
---|
| 3644 | if test_object%isfield(Series,'sethandles') |
---|
| 3645 | Series.ProjObject=read_set_object(Series.sethandles); |
---|
[12] | 3646 | %answeryes=questdlg({['field series projected on ' Series.ProjObject.Style]}); |
---|
| 3647 | answeryes=msgbox_uvmat('INPUT_Y-N',['field series projected on ' Series.ProjObject.Style]); |
---|
[2] | 3648 | if ~isequal(answeryes,'Yes') |
---|
| 3649 | return |
---|
| 3650 | end |
---|
| 3651 | else |
---|
| 3652 | msgbox_uvmat('ERROR','a projection object is needed'); |
---|
| 3653 | return |
---|
| 3654 | end |
---|
| 3655 | |
---|
| 3656 | % root names |
---|
| 3657 | if iscell(Series.RootPath) |
---|
| 3658 | RootPath=Series.RootPath; |
---|
| 3659 | RootFile=Series.RootFile; |
---|
| 3660 | SubDir=Series.SubDir; |
---|
| 3661 | FileExt=Series.FileExt; |
---|
| 3662 | NomType=Series.NomType; |
---|
| 3663 | else |
---|
| 3664 | RootPath={Series.RootPath}; |
---|
| 3665 | RootFile={Series.RootFile}; |
---|
| 3666 | SubDir={Series.SubDir}; |
---|
| 3667 | FileExt={Series.FileExt}; |
---|
| 3668 | NomType={Series.NomType}; |
---|
| 3669 | num_i1={num_i1}; |
---|
| 3670 | num_i2={num_i2}; |
---|
| 3671 | num_j1={num_j1}; |
---|
| 3672 | num_j2={num_j2}; |
---|
| 3673 | end |
---|
| 3674 | ext=FileExt{1}; |
---|
| 3675 | form=imformats(ext([2:end]));%test valid Matlab image formats |
---|
| 3676 | testima=0; |
---|
| 3677 | if ~isempty(form)||isequal(lower(ext),'.avi') |
---|
| 3678 | testima=1; |
---|
| 3679 | end |
---|
| 3680 | nbview=length(RootPath);%number of series (1 or 2) |
---|
| 3681 | nbfield=size(num_i1{1},1)*size(num_i1{1},2); %number of fields in the time series |
---|
| 3682 | |
---|
| 3683 | %Number of input series: this function accepts only a single input file series |
---|
| 3684 | nbview=length(RootPath); |
---|
[12] | 3685 | if nbview==2 |
---|
| 3686 | %TODO: choose between difference and two series |
---|
| 3687 | elseif nbview>2 % TODO: make multiple series |
---|
| 3688 | % RootPath=RootPath(1:2); |
---|
| 3689 | % set(hseries.RootPath,'String',RootPath) |
---|
| 3690 | % SubDir=SubDir(1:2); |
---|
| 3691 | % set(hseries.SubDir,'String',SubDir) |
---|
| 3692 | % RootFile=RootFile(1:2); |
---|
| 3693 | % set(hseries.RootFile,'String',RootFile) |
---|
| 3694 | % NomType=NomType(1:2); |
---|
| 3695 | % %set(hseries.NomType,'String',NomType) |
---|
| 3696 | % FileExt=FileExt(1:2); |
---|
| 3697 | % set(hseries.FileExt,'String',FileExt) |
---|
| 3698 | % nbview=2; |
---|
[2] | 3699 | end |
---|
| 3700 | hhh=which('mmreader'); |
---|
| 3701 | for iview=1:nbview |
---|
| 3702 | test_movie(iview)=0; |
---|
| 3703 | if ~isequal(hhh,'')&& mmreader.isPlatformSupported() |
---|
| 3704 | if isequal(lower(FileExt{iview}),'.avi') |
---|
| 3705 | MovieObject{iview}=mmreader(fullfile(RootPath{iview},[RootFile{iview} FileExt{iview}])); |
---|
| 3706 | test_movie(iview)=1; |
---|
| 3707 | end |
---|
| 3708 | end |
---|
| 3709 | end |
---|
| 3710 | filebase{1}=fullfile(RootPath{1},RootFile{1}); |
---|
| 3711 | |
---|
| 3712 | % number of slices |
---|
| 3713 | NbSlice=str2num(get(hseries.NbSlice,'String')); |
---|
| 3714 | if isempty(NbSlice) |
---|
| 3715 | NbSlice=1; |
---|
| 3716 | end |
---|
| 3717 | NbSlice_name=num2str(NbSlice); |
---|
| 3718 | |
---|
| 3719 | % Field and velocity type (the same for the two views) |
---|
| 3720 | if isfield(Series,'Field') |
---|
| 3721 | FieldName=Series.Field;%the same set of fields for all views |
---|
| 3722 | else |
---|
| 3723 | FieldName={''}; |
---|
| 3724 | end |
---|
| 3725 | if isequal(FieldName,{'get_field...'}) |
---|
| 3726 | hget_field=findobj(allchild(0),'name','get_field');%find the get_field... GUI |
---|
[12] | 3727 | if numel(hget_field)>1 |
---|
| 3728 | delete(hget_field(2:end)) % delete multiple occurerence of the GUI get_fioeld |
---|
[2] | 3729 | elseif isempty(hget_field) |
---|
[12] | 3730 | filename=name_generator(filebase{1},num_i1{1}(1),num_j1{1}(1),FileExt{1},NomType{1},1,num_i2{1}(1),num_j2{1}(1),SubDir{1}); |
---|
[2] | 3731 | idetect(iview)=exist(filename,'file'); |
---|
| 3732 | hget_field=get_field(filename); |
---|
| 3733 | return |
---|
| 3734 | end |
---|
[12] | 3735 | %hhget_field=guidata(hget_field);%handles of GUI elements in get_field |
---|
| 3736 | SubField=read_get_field(hget_field) %read the names of the variables to plot in the get_field GUI |
---|
| 3737 | if isempty(SubField) |
---|
| 3738 | delete(hget_field) |
---|
| 3739 | filename=name_generator(filebase{1},num_i1{1}(1),num_j1{1}(1),FileExt{1},NomType{1},1,num_i2{1}(1),num_j2{1}(1),SubDir{1}); |
---|
| 3740 | hget_field=get_field(filename); |
---|
| 3741 | SubField=read_get_field(hget_field); %read the names of the variables to plot in the get_field GUI |
---|
[2] | 3742 | end |
---|
[12] | 3743 | % if isequal(get(hhget_field.menu_coord,'Visible'),'on') |
---|
| 3744 | % list_transform=get(hhget_field.menu_coord,'String'); |
---|
| 3745 | % val_list=get(hhget_field.menu_coord,'Value'); |
---|
| 3746 | % transform=list_transform{val_list}; |
---|
| 3747 | % end |
---|
[2] | 3748 | end |
---|
| 3749 | |
---|
| 3750 | %detect whether the two files are 'images' or 'netcdf' |
---|
| 3751 | testima=0; |
---|
| 3752 | testvol=0; |
---|
| 3753 | testcivx=0; |
---|
| 3754 | testnc=0; |
---|
| 3755 | FileExt=get(hseries.FileExt,'String'); |
---|
| 3756 | for iview=1:nbview |
---|
| 3757 | ext=FileExt{iview}; |
---|
| 3758 | form=imformats(ext([2:end])); |
---|
| 3759 | if isequal(lower(ext),'.vol') |
---|
| 3760 | testvol=testvol+1; |
---|
| 3761 | elseif ~isempty(form)||isequal(lower(ext),'.avi')% if the extension corresponds to an image format recognized by Matlab |
---|
| 3762 | testima=testima+1; |
---|
| 3763 | elseif isequal(ext,'.nc') |
---|
| 3764 | testnc=testnc+1; |
---|
| 3765 | end |
---|
| 3766 | end |
---|
| 3767 | if testvol |
---|
| 3768 | msgbox_uvmat('ERROR','volume images not implemented yet') |
---|
| 3769 | return |
---|
| 3770 | end |
---|
| 3771 | if testnc~=nbview && testima~=nbview && testvol~=nbview |
---|
| 3772 | msgbox_uvmat('need a set of images or a set of netcdf files with the same fields as input','ERROR') |
---|
| 3773 | return |
---|
| 3774 | end |
---|
| 3775 | if ~isequal(FieldName,{'get_field...'}) |
---|
| 3776 | testcivx=testnc; |
---|
| 3777 | end |
---|
| 3778 | |
---|
| 3779 | % Root name of output files (TO GENERALISE FOR TWO INPUT SERIES) |
---|
| 3780 | filebasesub=fullfile(RootPath{1},RootFile{1}); |
---|
| 3781 | if NbSlice==1 |
---|
| 3782 | filebase_out=[filebasesub '_time']; |
---|
| 3783 | else |
---|
| 3784 | filebase_out=[filebasesub '_' NbSlice_name 'mtim']; |
---|
| 3785 | increment=num_i1{1}(2)-num_i1{1}(1); |
---|
| 3786 | if ~isequal(increment,1) % if an increment is set |
---|
[12] | 3787 | answeryes=msgbox_uvmat('INPUT_Y-N',['will take time series in ' num2str(NbSlice) 'slices with increment = ' num2str(increment) '!']); |
---|
[2] | 3788 | else |
---|
| 3789 | answeryes=msgbox_uvmat('INPUT_Y-N',{['will take time series in ' num2str(NbSlice) ' slices'];['results stored as files ' filebase_out ' ...']}); |
---|
| 3790 | end |
---|
| 3791 | if ~isequal(answeryes,'Yes') |
---|
| 3792 | return |
---|
| 3793 | end |
---|
| 3794 | end |
---|
| 3795 | VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
| 3796 | VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
| 3797 | VelType{1}=VelType_str{VelType_val}; |
---|
| 3798 | if nbview==2 |
---|
| 3799 | VelType_str=get(hseries.VelTypeMenu_1,'String'); |
---|
| 3800 | VelType_val=get(hseries.VelTypeMenu_1,'Value'); |
---|
| 3801 | VelType{2}=VelType_str{VelType_val}; |
---|
| 3802 | end |
---|
| 3803 | |
---|
| 3804 | %Calibration data and timing: read the ImaDoc files |
---|
| 3805 | mode=''; %default |
---|
| 3806 | timecell={}; |
---|
| 3807 | XmlData={}; |
---|
| 3808 | itime=0; |
---|
| 3809 | NbSlice_calib={}; |
---|
| 3810 | for iview=1:nbview%Loop on views |
---|
| 3811 | XmlData{iview}=[];%default |
---|
| 3812 | filebase{iview}=fullfile(RootPath{iview},RootFile{iview}); |
---|
| 3813 | if exist([filebase{iview} '.xml'],'file') |
---|
| 3814 | [XmlData{iview},error]=imadoc2struct([filebase{iview} '.xml']); |
---|
| 3815 | if isfield(XmlData{iview},'Time') |
---|
| 3816 | itime=itime+1; |
---|
| 3817 | timecell{itime}=XmlData{iview}.Time; |
---|
| 3818 | end |
---|
| 3819 | if isfield(XmlData{iview},'GeometryCalib') && isfield(XmlData{iview}.GeometryCalib,'SliceCoord') |
---|
| 3820 | NbSlice_calib{iview}=size(XmlData{iview}.GeometryCalib.SliceCoord,1);%nbre of slices for Zindex in phys transform |
---|
| 3821 | if ~isequal(NbSlice_calib{iview},NbSlice_calib{1}) |
---|
| 3822 | msgbox_uvmat('WARNING','inconsistent number of Z indices for the field series'); |
---|
| 3823 | end |
---|
| 3824 | end |
---|
| 3825 | elseif exist([filebase{iview} '.civ'],'file') |
---|
| 3826 | [error,time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([filebase{iview} '.civ']); |
---|
| 3827 | itime=itime+1; |
---|
| 3828 | timecell{itime}=time; |
---|
| 3829 | XmlData{iview}.Time=time; |
---|
| 3830 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0]; |
---|
| 3831 | GeometryCalib.Tx=0; |
---|
| 3832 | GeometryCalib.Ty=0; |
---|
| 3833 | GeometryCalib.Tz=1; |
---|
| 3834 | GeometryCalib.dpx=1; |
---|
| 3835 | GeometryCalib.dpy=1; |
---|
| 3836 | GeometryCalib.sx=1; |
---|
| 3837 | GeometryCalib.Cx=0; |
---|
| 3838 | GeometryCalib.Cy=0; |
---|
| 3839 | GeometryCalib.f=1; |
---|
| 3840 | GeometryCalib.kappa1=0; |
---|
| 3841 | GeometryCalib.CoordUnit='cm'; |
---|
| 3842 | XmlData{iview}.GeometryCalib=GeometryCalib; |
---|
| 3843 | if error==1 |
---|
| 3844 | msgbox_uvmat('WARNING','inconsistent number of fields in the .civ file'); |
---|
| 3845 | end |
---|
| 3846 | end |
---|
| 3847 | end |
---|
| 3848 | |
---|
| 3849 | %check coincidence in time |
---|
| 3850 | multitime=0; |
---|
| 3851 | if length(timecell)==0 |
---|
| 3852 | time=[]; |
---|
| 3853 | elseif length(timecell)==1 |
---|
| 3854 | time=timecell{1}; |
---|
| 3855 | elseif length(timecell)>1 |
---|
| 3856 | multitime=1; |
---|
| 3857 | for icell=1:length(timecell) |
---|
| 3858 | if ~isequal(size(timecell{icell}),size(timecell{1})) |
---|
| 3859 | warndlg_uvmat('inconsistent time array dimensions in ImaDoc fields, the time for the first series is used','WARNING') |
---|
| 3860 | time=timecell{1}; |
---|
| 3861 | multitime=0; |
---|
| 3862 | break |
---|
| 3863 | end |
---|
| 3864 | end |
---|
| 3865 | end |
---|
| 3866 | if multitime |
---|
| 3867 | for icell=1:length(timecell) |
---|
| 3868 | time(icell,:,:)=timecell{icell}; |
---|
| 3869 | end |
---|
| 3870 | diff_time=max(max(diff(time))); |
---|
| 3871 | if diff_time>0 |
---|
| 3872 | warndlg_uvmat(['times of series differ by more than ' num2str(diff_time)],'WARNING') |
---|
| 3873 | end |
---|
| 3874 | end |
---|
| 3875 | if size(time,2) < num_i2{1}(end) || size(time,3) < num_j2{1}(end)% ime array absent or too short in ImaDoc xml file' |
---|
| 3876 | time=[]; |
---|
| 3877 | end |
---|
| 3878 | |
---|
| 3879 | % image or scalar processing programme set by user |
---|
| 3880 | Coord_menu=get(hseries.CoordType,'String'); |
---|
| 3881 | menu_val=get(hseries.CoordType,'Value'); |
---|
| 3882 | usrfct=Coord_menu{menu_val}; |
---|
| 3883 | testfct=~isequal(usrfct,''); |
---|
| 3884 | |
---|
| 3885 | % to update: |
---|
| 3886 | VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
| 3887 | VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
| 3888 | VelType{1}=VelType_str{VelType_val}; |
---|
| 3889 | if nbview==2 |
---|
| 3890 | VelType_str=get(hseries.VelTypeMenu_1,'String'); |
---|
| 3891 | VelType_val=get(hseries.VelTypeMenu_1,'Value'); |
---|
| 3892 | VelType{2}=VelType_str{VelType_val}; |
---|
| 3893 | end |
---|
| 3894 | |
---|
| 3895 | %LOOP ON SLICES |
---|
| 3896 | for i_slice=1:NbSlice |
---|
| 3897 | dt=[]; |
---|
| 3898 | nbmissing=0; %number of undetected files |
---|
| 3899 | nbfiles=0; |
---|
| 3900 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%LOOP ON FIELDS IN A SLICE |
---|
| 3901 | for ifile=i_slice:NbSlice:nbfield |
---|
| 3902 | stopstate=get(hseries.RUN,'BusyAction'); |
---|
| 3903 | if isequal(stopstate,'queue')% enable STOP command |
---|
| 3904 | update_waitbar(hseries.waitbar,WaitbarPos,ifile/nbfield) |
---|
| 3905 | for iview=1:nbview |
---|
| 3906 | filename=... |
---|
| 3907 | name_generator(filebase{iview},num_i1{iview}(ifile),num_j1{iview}(ifile),FileExt{iview},NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile),SubDir{iview}); |
---|
| 3908 | idetect(iview)=exist(filename,'file'); |
---|
| 3909 | Data{iview}=[]; %default |
---|
| 3910 | if testima |
---|
| 3911 | Data{iview}.ListVarName={'A'}; |
---|
| 3912 | Data{iview}.AName='image'; |
---|
| 3913 | if test_movie(iview) |
---|
| 3914 | A=read(MovieObject{iview},num_i1{iview}(ifile)); |
---|
| 3915 | else |
---|
| 3916 | A=double(read_image(filename,NomType{iview},num_i1{iview}(ifile)));% read the image, num2 is the counter for avi files |
---|
| 3917 | end |
---|
| 3918 | Data{iview}.ListVarName={'coord_y','coord_x','A'}; % |
---|
| 3919 | npy=size(A,1); |
---|
| 3920 | npx=size(A,2); |
---|
| 3921 | nbcolor=size(A,3); |
---|
| 3922 | if nbcolor==3 |
---|
[12] | 3923 | Data{iview}.VarDimName={'coord_y','coord_x',{'coord_y','coord_x','rgb'}}; |
---|
[2] | 3924 | else |
---|
| 3925 | Data{iview}.VarDimName={'coord_y','coord_x',{'coord_y','coord_x'}}; |
---|
| 3926 | end |
---|
| 3927 | Data{iview}.coord_y=[npy-0.5 0.5]; |
---|
| 3928 | Data{iview}.coord_x=[0.5 npx-0.5]; |
---|
| 3929 | Data{iview}.A=A; |
---|
| 3930 | Data{iview}.CoordType='px'; |
---|
| 3931 | elseif testcivx |
---|
| 3932 | [Data{iview},VelTypeOut]=read_civxdata(filename,FieldName,VelType); |
---|
| 3933 | else |
---|
| 3934 | [Data{iview},var_detect]=nc2struct(filename,SubField.ListVarName); %read the corresponding input data |
---|
| 3935 | Data{iview}.VarAttribute=SubField.VarAttribute; |
---|
| 3936 | end |
---|
| 3937 | if ~isempty(NbSlice_calib) % z index |
---|
| 3938 | Data{iview}.ZIndex=mod(num_i1{iview}(ifile)-1,NbSlice_calib{1})+1; |
---|
| 3939 | end |
---|
| 3940 | end |
---|
| 3941 | % geometry transform or other user defined transform |
---|
| 3942 | if ~isequal(Series.CoordType,'') |
---|
| 3943 | if nbview==2 |
---|
| 3944 | [Data{1},Data{2}]=feval(Series.CoordType,Data{1},XmlData{1},Data{2},XmlData{2}); |
---|
| 3945 | if isempty(Data{2}) |
---|
| 3946 | Data(2)=[]; |
---|
| 3947 | end |
---|
| 3948 | else |
---|
| 3949 | Data{1}=feval(Series.CoordType,Data{1},XmlData{1}); |
---|
| 3950 | end |
---|
| 3951 | end |
---|
| 3952 | if testcivx |
---|
| 3953 | Data{iview}=calc_field(FieldName,Data{iview});%calculate field (vort..) |
---|
| 3954 | end |
---|
| 3955 | if length(Data)==2 |
---|
| 3956 | [Field,errormsg]=sub_field(Data{1},Data{2}); %substract the two fields |
---|
| 3957 | if ~isempty(errormsg) |
---|
| 3958 | msgbox_uvmat('ERROR',['error in time_series/sub_field:' errormsg]) |
---|
| 3959 | return |
---|
| 3960 | end |
---|
| 3961 | else |
---|
| 3962 | Field=Data{1}; |
---|
| 3963 | end |
---|
| 3964 | if isfield(Series,'ProjObject') |
---|
[12] | 3965 | Series.ProjObject |
---|
[2] | 3966 | [Field,errormsg]=proj_field(Field,Series.ProjObject); |
---|
| 3967 | if ~isempty(errormsg) |
---|
| 3968 | msgbox_uvmat('ERROR',['error in time_series/proj_field:' errormsg]) |
---|
| 3969 | return |
---|
| 3970 | end |
---|
| 3971 | end |
---|
| 3972 | if min(idetect)>=1% the input file(s) have been detected |
---|
| 3973 | nbfiles=nbfiles+1; |
---|
| 3974 | if nbfiles==1 %first field: initiate the time series |
---|
| 3975 | RecordData=Field;%default |
---|
| 3976 | RecordData.NbDim=Field.NbDim+1; %add the time dimension for plots |
---|
| 3977 | nbvar=length(Field.ListVarName); |
---|
| 3978 | if nbvar==0 |
---|
| 3979 | msgbox_uvmat('ERROR','no input variable selected in get_field') |
---|
| 3980 | return |
---|
| 3981 | end |
---|
| 3982 | testsum=2*ones(1,nbvar);%initiate flag for action on each variable |
---|
| 3983 | indexfalse=0; |
---|
| 3984 | CoordName={}; |
---|
| 3985 | indexremove=[]; |
---|
| 3986 | if isfield(Field,'VarAttribute') % look for coordinate and flag variables |
---|
| 3987 | for ivar=1:nbvar |
---|
| 3988 | if length(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'Role') |
---|
| 3989 | var_role=Field.VarAttribute{ivar}.Role;%'role' of the variable |
---|
| 3990 | if isequal(var_role,'errorflag') |
---|
| 3991 | msgbox_uvmat('ERROR','do not handle error flags in time series') |
---|
| 3992 | return |
---|
| 3993 | end |
---|
| 3994 | if isequal(var_role,'warnflag') |
---|
| 3995 | testsum(ivar)=0; % not recorded variable |
---|
| 3996 | eval(['RecordData=rmfield(RecordData,''' Field.ListVarName{ivar} ''');']);%remove variable |
---|
| 3997 | end |
---|
| 3998 | if isequal(var_role,'coord_x')| isequal(var_role,'coord_y')|... |
---|
| 3999 | isequal(var_role,'coord_z')|isequal(var_role,'coord') |
---|
| 4000 | testsum(ivar)=1; %constant coordinates, record without time evolution |
---|
| 4001 | end |
---|
| 4002 | % check whether the variable ivar is a dimension variable |
---|
| 4003 | %index=Field.VarDimIndex{ivar};%dimension indices of the variable #ivar |
---|
| 4004 | DimCell=Field.VarDimName{ivar}; |
---|
| 4005 | if ischar(DimCell) |
---|
| 4006 | DimCell={DimCell}; |
---|
| 4007 | end |
---|
[12] | 4008 | if numel(DimCell)==1 && isequal(Field.ListVarName{ivar},DimCell{1})%detect dimension variables |
---|
[2] | 4009 | testsum(ivar)=1; |
---|
| 4010 | end |
---|
| 4011 | end |
---|
| 4012 | end |
---|
| 4013 | end |
---|
| 4014 | for ivar=1:nbvar |
---|
| 4015 | if testsum(ivar)==2 |
---|
| 4016 | eval(['RecordData.' Field.ListVarName{ivar} '=[];']) |
---|
| 4017 | end |
---|
| 4018 | end |
---|
| 4019 | RecordData.ListVarName=[{'Time'} RecordData.ListVarName]; |
---|
| 4020 | end |
---|
| 4021 | for ivar=1:length(Field.ListVarName) |
---|
| 4022 | VarName=Field.ListVarName{ivar}; |
---|
| 4023 | eval(['VarVal=Field.' VarName ';']); |
---|
| 4024 | if testsum(ivar)==2% test for recorded variable |
---|
| 4025 | eval(['VarVal=Field.' VarName ';']); |
---|
| 4026 | if isequal(Series.ProjObject.ProjMode,'inside')% take the average in the domain for 'inside' mode |
---|
| 4027 | if isempty(VarVal) |
---|
| 4028 | msgbox_uvmat('ERROR',['empty result at frame index ' num2str(num_i1{iview}(ifile))]) |
---|
| 4029 | return |
---|
| 4030 | end |
---|
| 4031 | VarVal=mean(VarVal,1); |
---|
| 4032 | end |
---|
| 4033 | VarVal=shiftdim(VarVal,-1); %shift dimension |
---|
[12] | 4034 | eval(['RecordData.' VarName '=cat(1,RecordData.' VarName ',VarVal);']);%concanete the current field to the time series |
---|
[2] | 4035 | elseif testsum(ivar)==1% variable representing fixed coordinates |
---|
| 4036 | eval(['VarInit=RecordData.' VarName ';']); |
---|
| 4037 | if ~isequal(VarVal,VarInit) |
---|
| 4038 | msgbox_uvmat('ERROR',['time series requires constant coordinates ' VarName]) |
---|
| 4039 | return |
---|
| 4040 | end |
---|
| 4041 | end |
---|
| 4042 | end |
---|
| 4043 | % time: |
---|
| 4044 | if isempty(time)% time read in ncfiles |
---|
| 4045 | if isfield(Field,'Time') |
---|
| 4046 | RecordData.Time(nbfiles,1)=Field.Time; |
---|
| 4047 | else |
---|
| 4048 | RecordData.Time(nbfiles,1)=nbfiles;%default |
---|
| 4049 | end |
---|
| 4050 | else % time from ImaDoc prevails |
---|
| 4051 | RecordData.Time(nbfiles,1)=(time(1,num_i1{1}(ifile),num_j1{1}(ifile))+time(end,num_i2{end}(ifile),num_j2{end}(ifile)))/2; |
---|
| 4052 | end |
---|
| 4053 | else |
---|
| 4054 | nbmissing=nbmissing+1; |
---|
| 4055 | end |
---|
| 4056 | end |
---|
| 4057 | end |
---|
| 4058 | %remove time for global attributes if exists |
---|
| 4059 | for iattr=1:numel(RecordData.ListGlobalAttribute) |
---|
| 4060 | if strcmp(RecordData.ListGlobalAttribute{iattr},'Time') |
---|
| 4061 | RecordData.ListGlobalAttribute(iattr)=[]; |
---|
| 4062 | break |
---|
| 4063 | end |
---|
| 4064 | end |
---|
| 4065 | for ivar=1:numel(RecordData.ListVarName) |
---|
| 4066 | VarName=RecordData.ListVarName{ivar}; |
---|
| 4067 | eval(['RecordData.' VarName '=squeeze(RecordData.' VarName ');']) %remove singletons |
---|
| 4068 | end |
---|
| 4069 | % add time dimension and update VarDimIndex: |
---|
| 4070 | %if ~isequal(Series.ProjObject.ProjMode,'inside')% take the average in the domain for 'inside' mode |
---|
| 4071 | for ivar=1:length(Field.ListVarName) |
---|
| 4072 | % vardimindex=Field.VarDimIndex{ivar};% array of dimension indices for variable VarIndex(ivar) |
---|
| 4073 | DimCell=Field.VarDimName(ivar); |
---|
| 4074 | if testsum(ivar)==2%variable used as time series |
---|
| 4075 | % RecordData.VarDimIndex{ivar}=[1 vardimindex+1]; |
---|
| 4076 | RecordData.VarDimName{ivar}=[{'Time'} DimCell]; |
---|
| 4077 | elseif testsum(ivar)==1 |
---|
| 4078 | % RecordData.VarDimIndex{ivar}=[vardimindex+1]; |
---|
| 4079 | RecordData.VarDimName{ivar}=DimCell; |
---|
| 4080 | end |
---|
| 4081 | end |
---|
| 4082 | % end |
---|
| 4083 | indexremove=find(~testsum); |
---|
| 4084 | if ~isempty(indexremove) |
---|
| 4085 | RecordData.ListVarName(1+indexremove)=[]; |
---|
| 4086 | RecordData.VarDimName(indexremove)=[]; |
---|
| 4087 | if isfield(RecordData,'Role')&~isempty(RecordData.Role{1})%generaliser aus autres attributs |
---|
| 4088 | RecordData.Role(1+indexremove)=[]; |
---|
| 4089 | end |
---|
| 4090 | end |
---|
| 4091 | %RecordData.VarDimIndex=[{[1]} RecordData.VarDimIndex]; %time dimension |
---|
| 4092 | %shift variable attributes |
---|
| 4093 | if isfield(RecordData,'VarAttribute') |
---|
| 4094 | RecordData.VarAttribute=[{[]} RecordData.VarAttribute]; |
---|
| 4095 | end |
---|
| 4096 | RecordData.VarDimName=[{'Time'} RecordData.VarDimName]; |
---|
| 4097 | RecordData.Action=Series.Action;%name of the processing programme |
---|
| 4098 | %name of result file |
---|
| 4099 | [filemean]=... |
---|
| 4100 | name_generator(filebase_out,num_i1{1}(i_slice),num_j1{1}(i_slice),'.nc','_i1-i2_j1-j2',1,num_i2{end}(ifile),num_j2{end}(ifile),SubDir{1}); |
---|
| 4101 | errormsg=struct2nc(filemean,RecordData); %save result file |
---|
| 4102 | if isempty(errormsg) |
---|
| 4103 | display([filemean ' written']) |
---|
| 4104 | else |
---|
| 4105 | msgbox_uvmat('ERROR',['error in Series/struct2nc' errormsg]) |
---|
| 4106 | end |
---|
| 4107 | end |
---|
| 4108 | figure |
---|
| 4109 | haxes=axes; |
---|
| 4110 | |
---|
| 4111 | plot_field(RecordData,haxes) |
---|
| 4112 | hget_field=findobj(allchild(0),'name','get_field'); |
---|
| 4113 | if ~isempty(hget_field) |
---|
| 4114 | delete(hget_field) |
---|
| 4115 | end |
---|
| 4116 | get_field(filemean,RecordData) |
---|
| 4117 | |
---|
| 4118 | %----------------------------------------------------------------------- |
---|
| 4119 | % --- Executes on selection change in CoordType. |
---|
| 4120 | function CoordType_Callback(hObject, eventdata, handles) |
---|
| 4121 | menu_str=get(handles.CoordType,'String'); |
---|
| 4122 | ind_coord=get(handles.CoordType,'Value'); |
---|
| 4123 | coord_option=menu_str{ind_coord}; |
---|
| 4124 | if isequal(coord_option,'more...'); |
---|
| 4125 | fct_name=''; |
---|
| 4126 | if exist('./TMP/current_usr_fct.mat','file')% if a file is found |
---|
| 4127 | h=load('./TMP/current_usr_fct.mat'); |
---|
| 4128 | if isfield(h,'fct_name'); |
---|
| 4129 | fct_name=h.fct_name; |
---|
| 4130 | end |
---|
| 4131 | end |
---|
| 4132 | prompt = {'Enter the name of the transform function'}; |
---|
| 4133 | dlg_title = 'user defined transform'; |
---|
| 4134 | num_lines= 1; |
---|
| 4135 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 4136 | {'*.m', ' (*.m)'; |
---|
| 4137 | '*.m', '.m files '; ... |
---|
| 4138 | '*.*', 'All Files (*.*)'}, ... |
---|
| 4139 | 'Pick a file', fct_name); |
---|
| 4140 | fct_name=fullfile(PathName,FileName); |
---|
| 4141 | addpath(PathName);%add the path to the selected fct |
---|
| 4142 | [errormsg,date_str]=check_functions;%check whether new functions can oversed the uvmat package A UTILISER |
---|
| 4143 | if ~exist(fct_name,'file') |
---|
| 4144 | warndlg(['image procesing fct ' fct_name ' not found']) |
---|
| 4145 | else |
---|
| 4146 | transform=FileName(1:end-2);% |
---|
| 4147 | update_menu(handles.CoordType,transform)%add the selected fct to the menu |
---|
| 4148 | % set(handles.mouse_coord,'String',menu([1:end-1])')%update the mouse coord menu |
---|
| 4149 | %save ('./TMP/current_usr_fct.mat','fct_name'); |
---|
| 4150 | end |
---|
| 4151 | end |
---|
| 4152 | ind_coord=get(handles.CoordType,'Value'); |
---|
| 4153 | |
---|
| 4154 | %--------------------------------------------------------------------- |
---|
| 4155 | % --- Executes on selection change in ProjObject. |
---|
| 4156 | function ProjObject_Callback(hObject, eventdata, handles) |
---|
| 4157 | |
---|
| 4158 | list_object=get(handles.ProjObject,'String'); |
---|
| 4159 | index=get(handles.ProjObject,'Value'); |
---|
| 4160 | hseries=get(handles.ProjObject,'Parent'); |
---|
| 4161 | SeriesData=get(hseries,'UserData'); |
---|
| 4162 | Obj=SeriesData.ProjObject{index}; |
---|
| 4163 | [SeriesData.hset_object,SeriesData.sethandles]=set_object(SeriesData.ProjObject{index}); |
---|
| 4164 | set(hseries,'UserData',SeriesData); |
---|
| 4165 | |
---|
| 4166 | %------------------------------------------------------------- |
---|
| 4167 | %generates a series of file names with reference numbers between range1 and |
---|
| 4168 | %range2 with increment incr. The reference number num_ref is the image number at the middle of the |
---|
| 4169 | %image pair. The set of first numbers num1 of the image pairs is also |
---|
| 4170 | %given as output |
---|
| 4171 | %------------------------------------------------------ |
---|
| 4172 | function [num_i1,num_i2,num_j1,num_j2,nbmissing]=netseries_generator(filebase,subdir,mode,first_i,incr_i,last_i,first_j,incr_j,last_j) |
---|
| 4173 | [Path,Name]=fileparts(filebase); |
---|
| 4174 | filebasesub=fullfile(Path,subdir,Name); |
---|
| 4175 | filecell={};%default |
---|
| 4176 | num_i1=[]; |
---|
| 4177 | num_i2=[]; |
---|
| 4178 | num_j1=[]; |
---|
| 4179 | num_j2=[]; |
---|
| 4180 | ind0_i=first_i:incr_i:last_i; |
---|
| 4181 | nbcolumn=length(ind0_i); |
---|
| 4182 | ind0_j=first_j:incr_j:last_j; |
---|
| 4183 | nbline=length(ind0_j); |
---|
| 4184 | if isequal(mode,'#_ab') |
---|
| 4185 | dirpair=dir([filebasesub '*_*.nc']); |
---|
| 4186 | elseif isequal(mode,'bursts')|isequal(mode,'series(Dj)') |
---|
| 4187 | dirpair=dir([filebasesub '_*_*-*.nc']); |
---|
| 4188 | elseif isequal(mode,'series(Di)') |
---|
| 4189 | dirpair=dir([filebasesub '_*-*_*.nc']); |
---|
| 4190 | else |
---|
| 4191 | errordlg('option *|* not yet implemented') |
---|
| 4192 | return |
---|
| 4193 | end |
---|
| 4194 | if isempty(dirpair) |
---|
| 4195 | errordlg('no pair detected in the selected range') |
---|
| 4196 | return |
---|
| 4197 | end |
---|
| 4198 | %ind0_i=first_i:incr_i:last_i; |
---|
| 4199 | %nbcolumn=length(ind0_i); |
---|
| 4200 | %dirpair=dir([filebasesub '_*_*-*.nc']); |
---|
| 4201 | if isequal(mode,'bursts')|isequal(mode,'#_ab') |
---|
| 4202 | icount=0; |
---|
| 4203 | for ifile=1:length(dirpair) |
---|
| 4204 | [RootPath,RootFile,str_1,str_2,str_a,str_b,ext,nom_type]=name2display(dirpair(ifile).name); |
---|
| 4205 | |
---|
| 4206 | % if isempty(str2num(str_1)) |
---|
| 4207 | % dirpair(ifile).name |
---|
| 4208 | % end |
---|
| 4209 | num1_r=str2num(str_1); |
---|
| 4210 | if isequal(RootFile,Name) & ~isempty(num1_r) |
---|
| 4211 | num_i1(ifile)=num1_r; |
---|
| 4212 | num_a(ifile)=stra2num(str_a); |
---|
| 4213 | num_b(ifile)=stra2num(str_b); |
---|
| 4214 | % icount=icount+1; |
---|
| 4215 | end |
---|
| 4216 | end |
---|
| 4217 | length(dirpair) |
---|
| 4218 | % num_j=floor((num_a+num_b)/2); %list of reference indices of the detected files |
---|
| 4219 | test_range= (num_i1 >=first_i)&(num_i1<= last_i);% =1 when both numbers are in the range |
---|
| 4220 | ind_i=((num_i1-first_i)/incr_i)+1;%indices i in the list of prescribed file indices |
---|
| 4221 | select=find(test_range &(floor(ind_i)==ind_i));%selected indices of num_i1 in the file directory |
---|
| 4222 | ind_i=ind_i(select);%set of selected indices ind_i |
---|
| 4223 | [ind_i,indsort]=sort(ind_i);%sorted list of ind_i |
---|
| 4224 | select=select(indsort); |
---|
| 4225 | num_i1=num_i1(select); |
---|
| 4226 | num_a=num_a(select); |
---|
| 4227 | num_b=num_b(select); |
---|
| 4228 | dirpair=dirpair(select); |
---|
| 4229 | [ind_remove]=find_pairs(dirpair,ind_i,nbcolumn); |
---|
| 4230 | ind_i(ind_remove)=[]; |
---|
| 4231 | num_a(ind_remove)=[]; |
---|
| 4232 | num_b(ind_remove)=[]; |
---|
| 4233 | num_j1=zeros(1,nbcolumn);%default |
---|
| 4234 | num_j2=num_j1; |
---|
| 4235 | num_j1(ind_i)=num_a; |
---|
| 4236 | num_j2(ind_i)=num_b; |
---|
| 4237 | num_i1=first_i:incr_i:last_i; |
---|
| 4238 | num_i2=num_i1; |
---|
| 4239 | nbmissing=nbcolumn-length(ind_i); |
---|
| 4240 | |
---|
| 4241 | elseif isequal(mode,'series(Di)') |
---|
| 4242 | %ind0_i=first_i:incr_i:last_i; |
---|
| 4243 | %nbcolumn=length(ind0_i); |
---|
| 4244 | %ind0_j=first_j:incr_j:last_j; |
---|
| 4245 | %nbline=length(ind0_j); |
---|
| 4246 | %dirpair=dir([filebasesub '_*-*_*.nc']); |
---|
| 4247 | for ifile=1:length(dirpair) |
---|
| 4248 | [RootPath,RootFile,str_1,str_2,str_a,str_b,ext,nom_type]=name2display(dirpair(ifile).name); |
---|
| 4249 | num_i1_r(ifile)=str2num(str_1); |
---|
| 4250 | num_i2_r(ifile)=str2num(str_2); |
---|
| 4251 | num_j(ifile)=str2num(str_a); |
---|
| 4252 | end |
---|
| 4253 | num_i=floor((num_i1_r+num_i2_r)/2); %list of reference indices of the detected files |
---|
| 4254 | test_range= (num_i >=first_i)&(num_i<= last_i)&(num_j >=first_j)&(num_j<= last_j);% =1 when both numbers are in the range |
---|
| 4255 | ind_i=((num_i-first_i)/incr_i)+1;%indices i and j in the list of prescribed file indices |
---|
| 4256 | ind_j=((num_j-first_j)/incr_j)+1; |
---|
| 4257 | ind_ij=ind_j+nbline*(ind_i-1);%indices in the reshhaped series of prescribed file indices |
---|
| 4258 | select=find(test_range &(floor(ind_i)==ind_i)&(floor(ind_j)==ind_j));%selected indices in the file directory |
---|
| 4259 | ind_ij=ind_ij(select);%set of selected indices ind_ij |
---|
| 4260 | [ind_ij,indsort]=sort(ind_ij);%sorted list of ind_ij |
---|
| 4261 | select=select(indsort); |
---|
| 4262 | num_i1_r=num_i1_r(select); |
---|
| 4263 | num_i2_r=num_i2_r(select); |
---|
| 4264 | % num_j=num_j(select); |
---|
| 4265 | dirpair=dirpair(select); |
---|
| 4266 | [ind_remove]=find_pairs(dirpair,ind_ij,nbcolumn*nbline) ; |
---|
| 4267 | ind_ij(ind_remove)=[]; |
---|
| 4268 | num_i1_r(ind_remove)=[]; |
---|
| 4269 | num_i2_r(ind_remove)=[]; |
---|
| 4270 | num_i1=zeros(1,nbline*nbcolumn);%default |
---|
| 4271 | num_i2=num_i1; |
---|
| 4272 | num_i1(ind_ij)=num_i1_r; |
---|
| 4273 | num_j2(ind_ij)=num_i2_r; |
---|
| 4274 | num_i1=reshape(num_i1,nbline,nbcolumn); |
---|
| 4275 | num_i2=reshape(num_i2,nbline,nbcolumn); |
---|
| 4276 | num_j1=meshgrid(ind0_i,ind0_j); |
---|
| 4277 | num_j2=num_j1; |
---|
| 4278 | nbmissing=nbline*nbcolumn-length(ind_ij); |
---|
| 4279 | elseif isequal(mode,'series(Dj)') |
---|
| 4280 | % ind0_i=first_i:incr_i:last_i; |
---|
| 4281 | % nbcolumn=length(ind0_i); |
---|
| 4282 | % ind0_j=first_j:incr_j:last_j; |
---|
| 4283 | % nbline=length(ind0_j); |
---|
| 4284 | % dirpair=dir([filebasesub '_*_*-*.nc']); |
---|
| 4285 | for ifile=1:length(dirpair) |
---|
| 4286 | [RootPath,RootFile,str_1,str_2,str_a,str_b,ext,nom_type]=name2display(dirpair(ifile).name); |
---|
| 4287 | num_i(ifile)=str2num(str_1); |
---|
| 4288 | num_a(ifile)=str2num(str_a); |
---|
| 4289 | num_b(ifile)=str2num(str_b); |
---|
| 4290 | end |
---|
| 4291 | num_j=floor((num_a+num_b)/2); %list of reference indices of the detected files |
---|
| 4292 | test_range= (num_i >=first_i)&(num_i<= last_i)&(num_j >=first_j)&(num_j<= last_j);% =1 when both numbers are in the range |
---|
| 4293 | ind_i=((num_i-first_i)/incr_i)+1;%indices i and j in the list of prescribed file indices |
---|
| 4294 | ind_j=((num_j-first_j)/incr_j)+1; |
---|
| 4295 | ind_ij=ind_j+nbline*(ind_i-1);%indices in the reshhaped series of prescribed file indices |
---|
| 4296 | select=find(test_range &(floor(ind_i)==ind_i)&(floor(ind_j)==ind_j));%selected indices in the file directory |
---|
| 4297 | ind_ij=ind_ij(select);%set of selected indices ind_ij |
---|
| 4298 | [ind_ij,indsort]=sort(ind_ij);%sorted list of ind_ij |
---|
| 4299 | select=select(indsort); |
---|
| 4300 | num_i=num_i(select); |
---|
| 4301 | num_a=num_a(select); |
---|
| 4302 | num_b=num_b(select); |
---|
| 4303 | dirpair=dirpair(select); |
---|
| 4304 | [ind_remove]=find_pairs(dirpair,ind_ij,nbcolumn*nbline) ; |
---|
| 4305 | ind_ij(ind_remove)=[]; |
---|
| 4306 | num_a(ind_remove)=[]; |
---|
| 4307 | num_b(ind_remove)=[]; |
---|
| 4308 | num_j1=zeros(1,nbline*nbcolumn);%default |
---|
| 4309 | num_j2=num_j1; |
---|
| 4310 | num_j1(ind_ij)=num_a; |
---|
| 4311 | num_j2(ind_ij)=num_b; |
---|
| 4312 | num_j1=reshape(num_j1,nbline,nbcolumn); |
---|
| 4313 | num_j2=reshape(num_j2,nbline,nbcolumn); |
---|
| 4314 | num_i1=meshgrid(ind0_i,ind0_j); |
---|
| 4315 | num_i2=num_i1; |
---|
| 4316 | nbmissing=nbline*nbcolumn-length(ind_ij); |
---|
| 4317 | % for i=1:length(indsel);%A SUPPRIMER ULTERIEUREMENT |
---|
| 4318 | % if indsel(i)==0 |
---|
| 4319 | % filecell{i}=''; |
---|
| 4320 | % else |
---|
| 4321 | % Name=dirpair(indsel(i)).name; |
---|
| 4322 | % filecell{i}=fullfile(Path,subdir,Name); |
---|
| 4323 | % end |
---|
| 4324 | % end |
---|
| 4325 | %else |
---|
| 4326 | % errordlg('option *|* not yet implemented') |
---|
| 4327 | % return |
---|
| 4328 | end |
---|
| 4329 | |
---|
| 4330 | %%%%%%%%%%%%% |
---|
| 4331 | function [ind_remove]=find_pairs(dirpair,ind_i,last_i) |
---|
| 4332 | |
---|
| 4333 | indsel=ind_i; |
---|
| 4334 | indiff=diff(ind_i); %test index increment to detect multiplets (several pairs with the same index ind_i) and holes in the series |
---|
| 4335 | indiff=[1 indiff last_i-ind_i(end)+1];%for testing gaps with the imposed bounds |
---|
| 4336 | if ~isempty(indiff) |
---|
| 4337 | indiff2=diff(indiff); |
---|
| 4338 | indiffp=[indiff2 1]; |
---|
| 4339 | indiffm=[1 indiff2]; |
---|
| 4340 | ind_multi_m=find((indiff==0)&(indiffm<0))-1;%indices of first members of multiplets |
---|
| 4341 | ind_multi_p=find((indiff==0)&(indiffp>0));%indices of last members of multiplets |
---|
| 4342 | %for each multiplet, select the most recent file |
---|
| 4343 | ind_remove=[]; |
---|
| 4344 | for i=1:length(ind_multi_m) |
---|
| 4345 | ind_pairs=ind_multi_m(i):ind_multi_p(i); |
---|
| 4346 | for imulti=1:length(ind_pairs) |
---|
| 4347 | datepair(imulti)=datenum(dirpair(ind_pairs(imulti)).date);%dates of creation |
---|
| 4348 | end |
---|
| 4349 | [datenew,indsort2]=sort(datepair); %sort the multiplet by creation date |
---|
| 4350 | ind_s=indsort2(1:end-1);% |
---|
| 4351 | ind_remove=[ind_remove ind_pairs(ind_s)];%remove these indices, leave the last one |
---|
| 4352 | end |
---|
| 4353 | end |
---|
| 4354 | |
---|
| 4355 | %-------------------------------------------------------- |
---|
| 4356 | |
---|
| 4357 | |
---|
| 4358 | %----------------------------------------------------------- |
---|
| 4359 | % find the times corresponding to the first and last indices of a series |
---|
| 4360 | % |
---|
| 4361 | function displ_time(handles,times) |
---|
| 4362 | hseries=get(handles.last_i,'parent'); |
---|
| 4363 | SeriesData=get(hseries,'UserData');% |
---|
| 4364 | first_i=str2num(get(handles.first_i,'String')); |
---|
| 4365 | first_j=str2num(get(handles.first_j,'String')); |
---|
| 4366 | last_i=str2num(get(handles.last_i,'String')); |
---|
| 4367 | last_j=str2num(get(handles.last_j,'String')); |
---|
| 4368 | % index_civ=get(handles.list_pair_civ,'Value'); |
---|
| 4369 | % NomType=get(handles.NomType,'String'); |
---|
| 4370 | NomType=SeriesData.NomType; |
---|
| 4371 | mode_list=get(handles.mode,'String'); |
---|
| 4372 | index_mode=get(handles.mode,'Value'); |
---|
| 4373 | mode=mode_list{index_mode}; |
---|
| 4374 | % ind_shift=0;%default |
---|
| 4375 | |
---|
| 4376 | time_first=[]; |
---|
| 4377 | time_last=[]; |
---|
| 4378 | if ~isfield(SeriesData,'Time') |
---|
| 4379 | SeriesData.Time{1}=[]; |
---|
| 4380 | end |
---|
| 4381 | for iview=1:length(NomType) |
---|
| 4382 | time_first_cell{iview}='?'; |
---|
| 4383 | time_last_cell{iview}='?';%default |
---|
| 4384 | time=SeriesData.Time{iview}; |
---|
| 4385 | if isequal(NomType{iview},'_i1-i2_j')|isequal(NomType{iview},'_i_j1-j2')|isequal(NomType{iview},'#_ab')|isequal(NomType{iview},'_i1-i2') |
---|
| 4386 | if isfield(SeriesData,'displ_num')& ~isempty(SeriesData.displ_num) |
---|
| 4387 | ind_shift=SeriesData.displ_num(iview,:); |
---|
| 4388 | if isequal(mode,'bursts') |
---|
| 4389 | first_j=0; |
---|
| 4390 | last_j=0; |
---|
| 4391 | end |
---|
| 4392 | first_i1=first_i +ind_shift(3); |
---|
| 4393 | first_i2 =first_i +ind_shift(4); |
---|
| 4394 | first_j1 =first_j +ind_shift(1); |
---|
| 4395 | first_j2 =first_j +ind_shift(2); |
---|
| 4396 | last_i1=last_i +ind_shift(3); |
---|
| 4397 | last_i2 =last_i +ind_shift(4); |
---|
| 4398 | last_j1 =last_j +ind_shift(1); |
---|
| 4399 | last_j2 =last_j +ind_shift(2); |
---|
| 4400 | siz=size(SeriesData.Time{1}); |
---|
[17] | 4401 | if first_i1>=1 && first_j1 |
---|
| 4402 | >=1 && siz(1)>=last_i2 && siz(2)>=last_j2 |
---|
[2] | 4403 | time_first=(time(first_i1,first_j1)+time(first_i2,first_j2))/2; |
---|
| 4404 | time_last=(time(last_i1,last_j1)+time(last_i2,last_j2))/2; |
---|
| 4405 | else%read the time in the nc files |
---|
| 4406 | RootPath=get(handles.RootPath,'String'); |
---|
| 4407 | RootFile=get(handles.RootFile,'String'); |
---|
| 4408 | SubDir=get(handles.SubDir,'String'); |
---|
| 4409 | %VelType=get(handles.VelType,'String'); |
---|
| 4410 | VelType_str=get(handles.VelTypeMenu,'String'); |
---|
| 4411 | VelType_val=get(handles.VelTypeMenu,'Value'); |
---|
| 4412 | VelType=VelType_str{VelType_val}; |
---|
| 4413 | filebase=fullfile(RootPath{1},RootFile{1}); |
---|
| 4414 | [filefirst]=name_generator(filebase,first_i1,first_j1,'.nc',NomType{iview},1,first_i2,first_j2,SubDir{iview}); |
---|
| 4415 | if exist(filefirst,'file') |
---|
| 4416 | Attrib=nc2struct(filefirst,[]); |
---|
| 4417 | if isfield(Attrib,'Time') |
---|
| 4418 | time_first=Attrib.Time; |
---|
| 4419 | else |
---|
| 4420 | if isfield(Attrib,'absolut_time_T0') |
---|
| 4421 | time_first=Attrib.absolut_time_T0; |
---|
| 4422 | end |
---|
[12] | 4423 | if isfield(Attrib,'absolut_time_T0_2')&&~(isequal(VelType,'civ1')||isequal(VelType,'interp1')||isequal(VelType,'filter1')) |
---|
[2] | 4424 | time_first=Attrib.absolut_time_T0_2; |
---|
| 4425 | end |
---|
| 4426 | end |
---|
| 4427 | end |
---|
| 4428 | [filelast]=name_generator(filebase,last_i1,last_j1,'.nc',NomType{iview},1,last_i2,last_j2,SubDir{iview}); |
---|
| 4429 | if exist(filelast,'file') |
---|
| 4430 | Attrib=nc2struct(filelast,[]); |
---|
| 4431 | if isfield(Attrib,'Time') |
---|
| 4432 | time_last=Attrib.Time; |
---|
| 4433 | else |
---|
| 4434 | if isfield(Attrib,'absolut_time_T0') |
---|
| 4435 | time_last=Attrib.absolut_time_T0; |
---|
| 4436 | end |
---|
[12] | 4437 | if isfield(Attrib,'absolut_time_T0_2')&&~(isequal(VelType,'civ1')||isequal(VelType,'interp1')||isequal(VelType,'filter1')) |
---|
[2] | 4438 | time_last=Attrib.absolut_time_T0_2; |
---|
| 4439 | end |
---|
| 4440 | end |
---|
| 4441 | end |
---|
| 4442 | end |
---|
| 4443 | end |
---|
| 4444 | else |
---|
| 4445 | siz=size(times); |
---|
| 4446 | if siz(1)>=last_i & siz(2)>=last_j |
---|
| 4447 | time_first=times(first_i,first_j); |
---|
| 4448 | time_last=times(last_i,last_j); |
---|
| 4449 | end |
---|
| 4450 | end |
---|
| 4451 | time_first_cell{iview}=num2str(time_first,4); |
---|
| 4452 | time_last_cell{iview}=num2str(time_last,4); |
---|
| 4453 | end |
---|
| 4454 | set(handles.time_first,'Value',1) |
---|
| 4455 | set(handles.time_last,'Value',1) |
---|
| 4456 | set(handles.time_first,'String',time_first_cell); |
---|
| 4457 | set(handles.time_last,'String',time_last_cell); |
---|
| 4458 | |
---|
| 4459 | %-------------------------------------------------------------------- |
---|
| 4460 | % --- Executes on selection change in VelTypeMenu. |
---|
| 4461 | function VelTypeMenu_Callback(hObject, eventdata, handles) |
---|
| 4462 | % VelTypeList=get(handles.VelTypeMenu,'String'); |
---|
| 4463 | % VelTypeIndex=get(handles.VelTypeMenu,'Value'); |
---|
| 4464 | % VelTypeCell=get(handles.VelType,'String'); |
---|
| 4465 | % VelTypeCell{1}=VelTypeList{VelTypeIndex}; |
---|
| 4466 | % set(handles.VelType,'String',VelTypeCell) |
---|
| 4467 | |
---|
| 4468 | |
---|
| 4469 | %-------------------------------------------------------------------- |
---|
| 4470 | % --- Executes on button press in GetObject. |
---|
| 4471 | function GetObject_Callback(hObject, eventdata, handles) |
---|
| 4472 | hseries=get(handles.GetObject,'parent'); |
---|
| 4473 | SeriesData=get(hseries,'UserData'); |
---|
| 4474 | value=get(handles.GetObject,'Value'); |
---|
| 4475 | if value |
---|
| 4476 | set(handles.GetObject,'BackgroundColor',[1 1 0])%put unactivated buttons to yellow |
---|
| 4477 | DataInit.ParentButton=handles.GetObject; |
---|
| 4478 | hset_object=findobj(allchild(0),'Name','set_object');%find the set_object interface handle |
---|
| 4479 | if ishandle(hset_object) |
---|
| 4480 | [SeriesData.hset_object,SeriesData.sethandles]=set_object(DataInit); %open the set_object interface |
---|
| 4481 | else |
---|
| 4482 | DataInit.TITLE='POINTS';%default option |
---|
| 4483 | [SeriesData.hset_object,SeriesData.sethandles]=set_object(DataInit); %open the set_object interface |
---|
| 4484 | end |
---|
| 4485 | else |
---|
| 4486 | set(handles.GetObject,'BackgroundColor',[0 1 0])%put activated buttons to green |
---|
| 4487 | if isfield(SeriesData,'hset_object')&& ishandle(SeriesData.hset_object) |
---|
| 4488 | close(SeriesData.hset_object) |
---|
| 4489 | end |
---|
| 4490 | end |
---|
| 4491 | set(hseries,'UserData',SeriesData) |
---|
| 4492 | |
---|
| 4493 | %-------------------------------------------------------------- |
---|
| 4494 | function GetMask_Callback(hObject, eventdata, handles) |
---|
| 4495 | value=get(handles.GetMask,'Value'); |
---|
| 4496 | if value |
---|
| 4497 | errordlg('not implemented yet') |
---|
| 4498 | end |
---|
| 4499 | %-------------------------------------------------------------- |
---|
| 4500 | |
---|
| 4501 | %-------------------------------------------------------------------------- |
---|
| 4502 | %'uv_ncbrowser': interactively calls the netcdf file browser 'get_field.m' |
---|
| 4503 | function ncbrowser_uvmat(hObject, eventdata) |
---|
| 4504 | bla=get(gcbo,'String'); |
---|
| 4505 | ind=get(gcbo,'Value'); |
---|
| 4506 | filename=cell2mat(bla(ind)); |
---|
| 4507 | blank=find(filename==' '); |
---|
| 4508 | filename=filename(1:blank-1); |
---|
| 4509 | get_field(filename) |
---|
| 4510 | |
---|
| 4511 | |
---|
| 4512 | |
---|
| 4513 | % -------------------------------------------------------------------- |
---|
| 4514 | function MenuHelp_Callback(hObject, eventdata, handles) |
---|
| 4515 | |
---|
| 4516 | path_to_uvmat=which ('uvmat');% check the path of uvmat |
---|
| 4517 | pathelp=fileparts(path_to_uvmat); |
---|
| 4518 | helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); |
---|
| 4519 | if isempty(dir(helpfile)), errordlg('Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') |
---|
| 4520 | else |
---|
| 4521 | web([helpfile '#series']) |
---|
| 4522 | end |
---|
| 4523 | |
---|
| 4524 | |
---|
| 4525 | |
---|
| 4526 | |
---|
| 4527 | |
---|
| 4528 | |
---|