[2] | 1 | %'series': master function associated to the GUI series.m for analysis field series |
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| 2 | %------------------------------------------------------------------------ |
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| 3 | % function varargout = series(varargin) |
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| 4 | % associated with the GUI series.fig |
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| 5 | % |
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| 6 | %INPUT |
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| 7 | % param: structure with input parameters (link with the GUI uvmat) |
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[446] | 8 | % .menu_coord_str: string for the TransformName (menu for coordinate transforms) |
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| 9 | % .menu_coord_val: value for TransformName (menu for coordinate transforms) |
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[2] | 10 | % .FileName: input file name |
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| 11 | % .FileName_1: second input file name |
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| 12 | % .list_field: menu of input fields |
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| 13 | % .index_fields: chosen index |
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| 14 | % .civ1=0 or 1, .interp1, ... : input civ field type |
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| 15 | % |
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[817] | 16 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 17 | % Copyright 2008-2014, LEGI / CNRS UJF G-INP, Joel.Sommeria@legi.grenoble-inp.fr |
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| 18 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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[2] | 19 | % This file is part of the toolbox UVMAT. |
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[817] | 20 | % |
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[2] | 21 | % UVMAT is free software; you can redistribute it and/or modify |
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[817] | 22 | % it under the terms of the GNU General Public License as published by |
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| 23 | % the Free Software Foundation; either version 2 of the License, or |
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| 24 | % (at your option) any later version. |
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| 25 | % |
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[2] | 26 | % UVMAT is distributed in the hope that it will be useful, |
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| 27 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 28 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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[817] | 29 | % GNU General Public License (file UVMAT/COPYING.txt) for more details. |
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| 30 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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[2] | 31 | |
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[408] | 32 | %------------------------------------------------------------------------ |
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| 33 | %------------------------------------------------------------------------ |
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| 34 | % I - MAIN FUNCTION series |
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| 35 | %------------------------------------------------------------------------ |
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| 36 | %------------------------------------------------------------------------ |
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[2] | 37 | function varargout = series(varargin) |
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| 38 | |
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| 39 | % Begin initialization code - DO NOT EDIT |
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| 40 | gui_Singleton = 1; |
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| 41 | gui_State = struct('gui_Name', mfilename, ... |
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| 42 | 'gui_Singleton', gui_Singleton, ... |
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| 43 | 'gui_OpeningFcn', @series_OpeningFcn, ... |
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| 44 | 'gui_OutputFcn', @series_OutputFcn, ... |
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| 45 | 'gui_LayoutFcn', [] , ... |
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| 46 | 'gui_Callback', []); |
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| 47 | if nargin && ischar(varargin{1}) |
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| 48 | gui_State.gui_Callback = str2func(varargin{1}); |
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| 49 | end |
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| 50 | |
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| 51 | if nargout |
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| 52 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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| 53 | else |
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| 54 | gui_mainfcn(gui_State, varargin{:}); |
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| 55 | end |
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| 56 | % End initialization code - DO NOT EDIT |
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| 57 | |
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| 58 | %-------------------------------------------------------------------------- |
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| 59 | % --- Executes just before series is made visible. |
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| 60 | %-------------------------------------------------------------------------- |
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[591] | 61 | function series_OpeningFcn(hObject, eventdata, handles,Param) |
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| 62 | |
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[2] | 63 | % Choose default command line output for series |
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| 64 | handles.output = hObject; |
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| 65 | % Update handles structure |
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| 66 | guidata(hObject, handles); |
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[591] | 67 | |
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| 68 | %% initial settings |
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[620] | 69 | % position and size of the GUI at opening |
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[609] | 70 | set(0,'Unit','points') |
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[620] | 71 | ScreenSize=get(0,'ScreenSize');%size of the current screen, in points (1/72 inch) |
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[612] | 72 | Width=900;% prefered width of the GUI in points (1/72 inch) |
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[620] | 73 | Height=624;% prefered height of the GUI in points (1/72 inch) |
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[609] | 74 | %adjust to screen size (reduced by a min margin) |
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| 75 | RescaleFactor=min((ScreenSize(3)-80)/Width,(ScreenSize(4)-80)/Height); |
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| 76 | if RescaleFactor>1 |
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| 77 | RescaleFactor=min(RescaleFactor,1); |
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| 78 | end |
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| 79 | Width=Width*RescaleFactor; |
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| 80 | Height=Height*RescaleFactor; |
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| 81 | LeftX=80*RescaleFactor;%position of the left fig side, in pixels (put to the left side, with some margin) |
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| 82 | LowY=round(ScreenSize(4)/2-Height/2); % put at the middle height on the screen |
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| 83 | set(hObject,'Units','points') |
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[620] | 84 | set(hObject,'Position',[LeftX LowY Width Height])% position and size of the GUI at opening |
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| 85 | |
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| 86 | % settings of table MinIndex_j |
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| 87 | set(handles.MinIndex_i,'ColumnFormat',{'numeric'}) |
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| 88 | set(handles.MinIndex_i,'ColumnEditable',false) |
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| 89 | set(handles.MinIndex_i,'ColumnName',{'i min'}) |
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[667] | 90 | set(handles.MinIndex_i,'Data',[])% initiate Data to double (not cell) |
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[620] | 91 | |
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| 92 | % settings of table MinIndex_j |
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| 93 | set(handles.MinIndex_j,'ColumnFormat',{'numeric'}) |
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| 94 | set(handles.MinIndex_j,'ColumnEditable',false) |
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| 95 | set(handles.MinIndex_j,'ColumnName',{'j min'}) |
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[667] | 96 | set(handles.MinIndex_j,'Data',[])% initiate Data to double (not cell) |
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[620] | 97 | |
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| 98 | % settings of table MaxIndex_i |
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| 99 | set(handles.MaxIndex_i,'ColumnFormat',{'numeric'}) |
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| 100 | set(handles.MaxIndex_i,'ColumnEditable',false) |
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| 101 | set(handles.MaxIndex_i,'ColumnName',{'i max'}) |
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[667] | 102 | set(handles.MaxIndex_i,'Data',[])% initiate Data to double (not cell) |
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[620] | 103 | |
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| 104 | % settings of table MaxIndex_j |
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| 105 | set(handles.MaxIndex_j,'ColumnFormat',{'numeric'}) |
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| 106 | set(handles.MaxIndex_j,'ColumnEditable',false) |
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| 107 | set(handles.MaxIndex_j,'ColumnName',{'j max'}) |
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[667] | 108 | set(handles.MaxIndex_j,'Data',[])% initiate Data to double (not cell) |
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[620] | 109 | |
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| 110 | % settings of table PairString |
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[526] | 111 | set(handles.PairString,'ColumnName',{'pairs'}) |
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[598] | 112 | set(handles.PairString,'ColumnEditable',false) |
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[408] | 113 | set(handles.PairString,'ColumnFormat',{'char'}) |
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| 114 | set(handles.PairString,'Data',{''}) |
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[620] | 115 | |
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[667] | 116 | % settings of table MaskTable |
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| 117 | set(handles.MaskTable,'ColumnName',{'mask name'}) |
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| 118 | set(handles.PairString,'ColumnEditable',false) |
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| 119 | set(handles.PairString,'ColumnFormat',{'char'}) |
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| 120 | set(handles.PairString,'Data',{''}) |
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| 121 | |
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[526] | 122 | series_ResizeFcn(hObject, eventdata, handles)%resize table according to series GUI size |
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[332] | 123 | set(hObject,'WindowButtonDownFcn',{'mouse_down'})%allows mouse action with right button (zoom for uicontrol display) |
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[710] | 124 | set(hObject,'DeleteFcn',{@closefcn})% |
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[620] | 125 | |
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[591] | 126 | % check default input data |
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| 127 | if ~exist('Param','var') |
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| 128 | Param=[]; %default |
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[609] | 129 | end |
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[591] | 130 | |
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[609] | 131 | %% list of builtin functions in the mebu ActionName |
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[654] | 132 | ActionList={'check_data_files';'aver_stat';'time_series';'civ_series';'merge_proj'};% WARNING: fits with nb_builtin_ACTION=4 in ActionName_callback |
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[609] | 133 | NbBuiltinAction=numel(ActionList); |
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[851] | 134 | set(handles.Action,'UserData',NbBuiltinAction) |
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[591] | 135 | [path_series,name,ext]=fileparts(which('series'));% path to the GUI series |
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| 136 | path_series_fct=fullfile(path_series,'series');%path of the functions in subdirectroy 'series' |
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[609] | 137 | ActionExtList={'.m';'.sh'};% default choice of extensions (Matlab fct .m or compiled version .sh |
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[851] | 138 | ActionPathList=cell(NbBuiltinAction,1);%initiate the cell matrix of Action fct paths |
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[609] | 139 | ActionPathList(:)={path_series_fct}; %set the default path to series fcts to all list members |
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[591] | 140 | RunModeList={'local';'background'};% default choice of extensions (Matlab fct .m or compiled version .sh) |
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| 141 | [s,w]=system('oarstat');% look for cluster system 'oar' |
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| 142 | if isequal(s,0) |
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| 143 | RunModeList=[RunModeList;{'cluster_oar'}]; |
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| 144 | end |
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| 145 | [s,w]=system('qstat');% look for cluster system 'sge' |
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| 146 | if isequal(s,0) |
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| 147 | RunModeList=[RunModeList;{'cluster_sge'}]; |
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| 148 | end |
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| 149 | set(handles.RunMode,'String',RunModeList) |
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| 150 | |
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[851] | 151 | %% list of builtin transform functions in the menu TransformName |
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[591] | 152 | TransformList={'';'sub_field';'phys';'phys_polar'};% WARNING: must fit with the corresponding menu in uvmat and nb_builtin_transform=4 in TransformName_callback |
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[609] | 153 | NbBuiltinTransform=numel(TransformList); |
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[591] | 154 | path_transform_fct=fullfile(path_series,'transform_field'); |
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[609] | 155 | TransformPathList=cell(NbBuiltinTransform,1);%initiate the cell matrix of Action fct paths |
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| 156 | TransformPathList(:)={path_transform_fct}; %set the default path to series fcts to all list members |
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[591] | 157 | |
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[609] | 158 | %% get the user defined functions stored in the personal file uvmat_perso.mat |
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[2] | 159 | dir_perso=prefdir; |
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| 160 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 161 | if exist(profil_perso,'file') |
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[591] | 162 | h=load (profil_perso); |
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| 163 | %get the list of previous input files in the upper bar menu Open |
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| 164 | if isfield(h,'MenuFile') |
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| 165 | for ifile=1:min(length(h.MenuFile),5) |
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[651] | 166 | set(handles.(['MenuFile_' num2str(ifile)]),'Label',h.MenuFile{ifile}); |
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[667] | 167 | set(handles.(['MenuFile_' num2str(ifile+5)]),'Label',h.MenuFile{ifile}); |
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[591] | 168 | end |
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| 169 | end |
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[851] | 170 | %get the list of previous campaigns in the upper bar menu Open campaign |
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[651] | 171 | if isfield(h,'MenuCampaign') |
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| 172 | for ifile=1:min(length(h.MenuCampaign),5) |
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| 173 | set(handles.(['MenuCampaign_' num2str(ifile)]),'Label',h.MenuCampaign{ifile}); |
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| 174 | end |
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| 175 | end |
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[591] | 176 | %get the menu of actions |
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| 177 | if isfield(h,'ActionExtListUser') && iscell(h.ActionExtListUser) |
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| 178 | ActionExtList=[ActionExtList; h.ActionExtListUser]; |
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| 179 | end |
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| 180 | if isfield(h,'ActionListUser') && iscell(h.ActionListUser) && isfield(h,'ActionPathListUser') && iscell(h.ActionPathListUser) |
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| 181 | ActionList=[ActionList;h.ActionListUser]; |
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[852] | 182 | ActionPathList=[ActionPathList;h.ActionPathListUser(:,1)]; |
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[591] | 183 | end |
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| 184 | %get the menu of transform fct |
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| 185 | if isfield(h,'TransformListUser') && iscell(h.TransformListUser) && isfield(h,'TransformPathListUser') && iscell(h.TransformPathListUser) |
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| 186 | TransformList=[TransformList;h.TransformListUser]; |
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| 187 | TransformPathList=[TransformPathList;h.TransformPathListUser]; |
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| 188 | end |
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[2] | 189 | end |
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| 190 | |
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[591] | 191 | %% selection of the input Action fct |
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[609] | 192 | ActionCheckExist=true(size(ActionList));%initiate the check of the path to the listed action fct |
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| 193 | for ilist=NbBuiltinAction+1:numel(ActionList)%check the validity of the path of the user defined Action fct |
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[591] | 194 | ActionCheckExist(ilist)=exist(fullfile(ActionPathList{ilist},[ActionList{ilist} '.m']),'file'); |
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[2] | 195 | end |
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[609] | 196 | ActionPathList=ActionPathList(ActionCheckExist,:);% suppress the menu options which are not valid anymore |
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[591] | 197 | ActionList=ActionList(ActionCheckExist); |
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| 198 | set(handles.ActionName,'String',[ActionList;{'more...'}]) |
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| 199 | set(handles.ActionName,'UserData',ActionPathList) |
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| 200 | ActionIndex=[]; |
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| 201 | if isfield(Param,'ActionName')% copy the selected menu index transferred in Param from uvmat |
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| 202 | ActionIndex=find(strcmp(Param.ActionName,ActionList),1); |
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[2] | 203 | end |
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[591] | 204 | if isempty(ActionIndex) |
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| 205 | ActionIndex=1; |
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[2] | 206 | end |
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[591] | 207 | set(handles.ActionName,'Value',ActionIndex) |
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| 208 | set(handles.ActionPath,'String',ActionPathList{ActionIndex}) |
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| 209 | set(handles.ActionExt,'Value',1) |
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| 210 | set(handles.ActionExt,'String',ActionExtList) |
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[2] | 211 | |
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[591] | 212 | %% selection of the input transform fct |
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[609] | 213 | TransformCheckExist=true(size(TransformList)); |
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| 214 | for ilist=NbBuiltinTransform+1:numel(TransformList) |
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[591] | 215 | TransformCheckExist(ilist)=exist(fullfile(TransformPathList{ilist},[TransformList{ilist} '.m']),'file'); |
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[2] | 216 | end |
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[591] | 217 | TransformPathList=TransformPathList(TransformCheckExist); |
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| 218 | TransformList=TransformList(TransformCheckExist); |
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| 219 | set(handles.TransformName,'String',[TransformList;{'more...'}]) |
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| 220 | set(handles.TransformName,'UserData',TransformPathList) |
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| 221 | TransformIndex=[]; |
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| 222 | if isfield(Param,'TransformName')% copy the selected menu index transferred in Param from uvmat |
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| 223 | TransformIndex=find(strcmp(Param.TransformName,TransformList),1); |
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[526] | 224 | end |
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[591] | 225 | if isempty(TransformIndex) |
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| 226 | TransformIndex=1; |
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[526] | 227 | end |
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[591] | 228 | set(handles.TransformName,'Value',TransformIndex) |
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| 229 | set(handles.TransformPath,'String',TransformPathList{TransformIndex}) |
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| 230 | |
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| 231 | %% fields input initialisation |
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| 232 | if isfield(Param,'list_fields')&& isfield(Param,'index_fields') &&~isempty(Param.list_fields) &&~isempty(Param.index_fields) |
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| 233 | set(handles.FieldName,'String',Param.list_fields);% list menu fields |
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| 234 | set(handles.FieldName,'Value',Param.index_fields);% selected string index |
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[2] | 235 | end |
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[771] | 236 | if isfield(Param,'Coord_x_str') && ischar(Param.Coord_x_str) |
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[591] | 237 | set(handles.Coord_x,'String',Param.Coord_x_str);% list menu fields |
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[38] | 238 | end |
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[771] | 239 | if isfield(Param,'Coord_y_str')&& ischar(Param.Coord_y_str) |
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[591] | 240 | set(handles.Coord_y,'String',Param.Coord_y_str);% list menu fields |
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[2] | 241 | end |
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[39] | 242 | |
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[803] | 243 | %% introduce the input file name(s) if defined from input Param, |
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[773] | 244 | if isfield(Param,'InputFile') |
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| 245 | |
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| 246 | %% fill the list of file series |
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| 247 | InputTable=[{Param.InputFile.RootPath},{Param.InputFile.SubDir},{Param.InputFile.RootFile},{Param.InputFile.NomType},{Param.InputFile.FileExt}]; |
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[775] | 248 | TimeTable=[{Param.InputFile.TimeName},{[]},{[]},{[]},{[]}]; |
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[773] | 249 | if isfield(Param.InputFile,'RootPath_1') |
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| 250 | InputTable=[InputTable;[{Param.InputFile.RootPath_1},{Param.InputFile.SubDir_1},{Param.InputFile.RootFile_1},{Param.InputFile.NomType_1},{Param.InputFile.FileExt_1}]]; |
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[775] | 251 | TimeTable=[TimeTable; [{Param.InputFile.TimeName_1},{[]},{[]},{[]},{[]}]]; |
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[773] | 252 | end |
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[591] | 253 | set(handles.InputTable,'Data',InputTable) |
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[803] | 254 | %% determine the selected reference field indices for pair display |
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[773] | 255 | |
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[803] | 256 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(Param.InputFile.FileIndex); |
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| 257 | if isempty(i1) |
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| 258 | i1=1; |
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| 259 | end |
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| 260 | if isempty(i2) |
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| 261 | i2=i1; |
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| 262 | end |
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| 263 | ref_i=floor((i1+i2)/2);% reference image number corresponding to the file |
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| 264 | % set(handles.num_ref_i,'String',num2str(ref_i)); |
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| 265 | if isempty(j1) |
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| 266 | j1=1; |
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| 267 | end |
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| 268 | if isempty(j2) |
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| 269 | j2=j1; |
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| 270 | end |
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| 271 | ref_j=floor((j1+j2)/2);% reference image number corresponding to the file |
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| 272 | SeriesData.ref_i=ref_i; |
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| 273 | SeriesData.ref_j=ref_j; |
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| 274 | set(handles.series,'UserData',SeriesData) |
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[773] | 275 | update_rootinfo(handles,Param.HiddenData.i1_series{1},Param.HiddenData.i2_series{1},Param.HiddenData.j1_series{1},Param.HiddenData.j2_series{1},... |
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| 276 | Param.HiddenData.FileInfo{1},Param.HiddenData.MovieObject{1},1) |
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[803] | 277 | if isfield(Param,'FileName_1') |
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[773] | 278 | % display_file_name(handles,Param,2) |
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| 279 | update_rootinfo(handles,Param.HiddenData.i1_series{2},Param.HiddenData.i2_series{2},Param.HiddenData.j1_series{2},Param.HiddenData.j2_series{2},... |
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| 280 | Param.HiddenData.FileInfo{2},Param.HiddenData.MovieObject{2},2) |
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[591] | 281 | end |
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[844] | 282 | %% enable field and veltype menus, in accordance with the current action |
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| 283 | ActionName_Callback([],[], handles) |
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| 284 | |
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| 285 | %% set length of waitbar |
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| 286 | displ_time(handles) |
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| 287 | |
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[769] | 288 | else |
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| 289 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color to indicate that input refresh is needed |
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[773] | 290 | end |
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[591] | 291 | if isfield(Param,'incr_i') |
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| 292 | set(handles.num_incr_i,'String',num2str(Param.incr_i)) |
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[803] | 293 | else |
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| 294 | set(handles.num_incr_i,'String','1') |
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[591] | 295 | end |
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| 296 | if isfield(Param,'incr_j') |
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| 297 | set(handles.num_incr_j,'String',num2str(Param.incr_j)) |
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[803] | 298 | else |
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| 299 | set(handles.num_incr_j,'String','1') |
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[591] | 300 | end |
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| 301 | |
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[408] | 302 | %------------------------------------------------------------------------ |
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[2] | 303 | % --- Outputs from this function are returned to the command line. |
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| 304 | function varargout = series_OutputFcn(hObject, eventdata, handles) |
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[803] | 305 | %------------------------------------------------------------------------ |
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[2] | 306 | varargout{1} = handles.output; |
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| 307 | |
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[408] | 308 | %------------------------------------------------------------------------ |
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[710] | 309 | % --- executed when closing uvmat: delete or desactivate the associated figures if exist |
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| 310 | function closefcn(gcbo,eventdata) |
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[408] | 311 | %------------------------------------------------------------------------ |
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[710] | 312 | |
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| 313 | % delete set_object_series if detected |
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| 314 | hh=findobj(allchild(0),'name','view_object_series'); |
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| 315 | if ~isempty(hh) |
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| 316 | delete(hh) |
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| 317 | end |
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| 318 | hh=findobj(allchild(0),'name','edit_object_series'); |
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| 319 | if ~isempty(hh) |
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| 320 | delete(hh) |
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| 321 | end |
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| 322 | |
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| 323 | %delete the bowser if detected |
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| 324 | hh=findobj(allchild(0),'tag','browser'); |
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| 325 | if ~isempty(hh) |
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| 326 | delete(hh) |
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| 327 | end |
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| 328 | |
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| 329 | |
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| 330 | %------------------------------------------------------------------------ |
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| 331 | %------------------------------------------------------------------------ |
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[408] | 332 | % II - FUNCTIONS FOR INTRODUCING THE INPUT FILES |
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| 333 | % automatically sets the global properties when the rootfile name is introduced |
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[446] | 334 | % then activate the view-field actionname if selected |
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[408] | 335 | % it is activated either by clicking on the RootPath window or by the |
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| 336 | % browser |
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| 337 | %------------------------------------------------------------------------ |
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| 338 | %------------------------------------------------------------------------ |
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[651] | 339 | % --- fct activated by the browser under 'Open' |
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| 340 | %------------------------------------------------------------------------ |
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[2] | 341 | function MenuBrowse_Callback(hObject, eventdata, handles) |
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[651] | 342 | %% look for the previously opened file 'oldfile' |
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[714] | 343 | InputTable=get(handles.InputTable,'Data'); |
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| 344 | oldfile=InputTable{1,1}; |
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| 345 | if isempty(oldfile) |
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| 346 | % use a file name stored in prefdir |
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| 347 | dir_perso=prefdir; |
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| 348 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 349 | if exist(profil_perso,'file') |
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| 350 | h=load (profil_perso); |
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| 351 | if isfield(h,'RootPath') && ischar(h.RootPath) |
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| 352 | oldfile=h.RootPath; |
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| 353 | end |
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[651] | 354 | end |
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[609] | 355 | end |
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[651] | 356 | %% launch the browser |
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[719] | 357 | fileinput=uigetfile_uvmat('pick an input file in the series',oldfile); |
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| 358 | hh=dir(fileinput); |
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| 359 | if numel(hh)>1 |
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| 360 | msgbox_uvmat('ERROR','invalid input, probably a broken link'); |
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| 361 | else |
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| 362 | if ~isempty(fileinput) |
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| 363 | display_file_name(handles,fileinput,'one') |
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| 364 | end |
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[667] | 365 | end |
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| 366 | |
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| 367 | % -------------------------------------------------------------------- |
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| 368 | function MenuBrowseAppend_Callback(hObject, eventdata, handles) |
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| 369 | |
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| 370 | %% look for the previously opened file 'oldfile' |
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| 371 | InputTable=get(handles.InputTable,'Data'); |
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| 372 | RootPathCell=InputTable(:,1); |
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| 373 | if isempty(RootPathCell{1})% no input file in the table |
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| 374 | MenuBrowse_Callback(hObject, eventdata, handles)%refresh the input table, not append |
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| 375 | return |
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| 376 | end |
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| 377 | SubDirCell=InputTable(:,2); |
---|
[714] | 378 | oldfile=fullfile(RootPathCell{1},SubDirCell{1}); |
---|
[667] | 379 | |
---|
| 380 | %% use a file name stored in prefdir |
---|
| 381 | dir_perso=prefdir; |
---|
| 382 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 383 | if exist(profil_perso,'file') |
---|
| 384 | h=load (profil_perso); |
---|
| 385 | if isfield(h,'RootPath') && ischar(h.RootPath) |
---|
| 386 | oldfile=h.RootPath; |
---|
[651] | 387 | end |
---|
[2] | 388 | end |
---|
| 389 | |
---|
[667] | 390 | %% launch the browser |
---|
| 391 | fileinput=uigetfile_uvmat('pick a file to append in the input table',oldfile); |
---|
[719] | 392 | hh=dir(fileinput); |
---|
| 393 | if numel(hh)>1 |
---|
| 394 | msgbox_uvmat('ERROR','invalid input, probably a broken link'); |
---|
| 395 | else |
---|
| 396 | if ~isempty(fileinput) |
---|
[667] | 397 | display_file_name(handles,fileinput,'append') |
---|
[719] | 398 | end |
---|
[667] | 399 | end |
---|
| 400 | |
---|
[651] | 401 | %------------------------------------------------------------------------ |
---|
| 402 | % --- fct activated by selecting a previous file under the menu Open |
---|
| 403 | %------------------------------------------------------------------------ |
---|
| 404 | function MenuFile_Callback(hObject, eventdata, handles) |
---|
[620] | 405 | |
---|
[714] | 406 | errormsg=display_file_name(handles,get(hObject,'Label'),'one'); |
---|
| 407 | if ~isempty(errormsg) |
---|
| 408 | set(hObject,'Label','') |
---|
| 409 | MenuFile=[{get(handles.MenuFile_1,'Label')};{get(handles.MenuFile_2,'Label')};... |
---|
| 410 | {get(handles.MenuFile_3,'Label')};{get(handles.MenuFile_4,'Label')};{get(handles.MenuFile_5,'Label')}]; |
---|
| 411 | str_find=strcmp(get(hObject,'Label'),MenuFile); |
---|
| 412 | MenuFile(str_find)=[];% suppress the input file to the list |
---|
| 413 | for ifile=1:numel(MenuFile) |
---|
| 414 | set(handles.(['MenuFile_' num2str(ifile)]),'Label',MenuFile{ifile}); |
---|
| 415 | end |
---|
| 416 | end |
---|
[667] | 417 | |
---|
| 418 | %------------------------------------------------------------------------ |
---|
| 419 | % --- fct activated by selecting a previous file under the menu Open/append |
---|
| 420 | %------------------------------------------------------------------------ |
---|
| 421 | function MenuFile_append_Callback(hObject, eventdata, handles) |
---|
| 422 | |
---|
| 423 | InputTable=get(handles.InputTable,'Data'); |
---|
| 424 | if isempty(InputTable{1,1})% no input file in the table |
---|
| 425 | display_file_name(handles,get(hObject,'Label'),'one') %refresh the input table, not append |
---|
[651] | 426 | else |
---|
[667] | 427 | display_file_name(handles,get(hObject,'Label'),'append')% append the selected file to the current list of InputTable |
---|
[651] | 428 | end |
---|
[2] | 429 | |
---|
[651] | 430 | %------------------------------------------------------------------------ |
---|
| 431 | % --- fct activated by the browser under 'Open campaign' |
---|
| 432 | %------------------------------------------------------------------------ |
---|
| 433 | function MenuBrowseCampaign_Callback(hObject, eventdata, handles) |
---|
[2] | 434 | |
---|
[651] | 435 | set(handles.MenuOpenCampaign,'ForegroundColor',[1 1 0]) |
---|
| 436 | drawnow |
---|
[350] | 437 | InputTable=get(handles.InputTable,'Data'); |
---|
[651] | 438 | RootPath=InputTable{1,1}; |
---|
| 439 | CampaignPath=fileparts(fileparts(RootPath)); |
---|
| 440 | DirFull=uigetfile_uvmat('define this path as the Campaign folder:',CampaignPath,'uigetdir'); |
---|
| 441 | if ~ischar(DirFull)|| ~exist(DirFull,'dir') |
---|
| 442 | return |
---|
[2] | 443 | end |
---|
[651] | 444 | OutPut=browse_data(DirFull);% open the GUI browse_data to get select a campaign dir, experiment and device |
---|
| 445 | if ~isfield(OutPut,'Campaign') |
---|
| 446 | return |
---|
[638] | 447 | end |
---|
[651] | 448 | DirName=fullfile(OutPut.Campaign,OutPut.Experiment{1},OutPut.DataSeries{1}); |
---|
| 449 | ListStruct=dir(DirName); %list files and the dir DataSeries |
---|
| 450 | % select the first appropriate file in the dir |
---|
| 451 | FileName=''; |
---|
| 452 | for ilist=1:numel(ListStruct) |
---|
| 453 | if ~isequal(ListStruct(ilist).isdir,1)%look for files, not dir |
---|
| 454 | FileName=ListStruct(ilist).name; |
---|
[784] | 455 | FileInfo=get_file_info(fullfile(DirName,FileName)); |
---|
[783] | 456 | switch FileInfo.FileType |
---|
[651] | 457 | case {'image','multimage','civx','civdata','netcdf'} |
---|
| 458 | break |
---|
| 459 | end |
---|
| 460 | end |
---|
| 461 | end |
---|
| 462 | if isempty(FileName) |
---|
| 463 | msgbox_uvmat('ERROR',['no appropriate input file in the DataSeries folder ' fullfile(DirName)]) |
---|
| 464 | return |
---|
| 465 | end |
---|
[2] | 466 | |
---|
[651] | 467 | %% update the list of campaigns in the menubar |
---|
| 468 | MenuCampaign=[{get(handles.MenuCampaign_1,'Label')};{get(handles.MenuCampaign_2,'Label')};... |
---|
| 469 | {get(handles.MenuCampaign_3,'Label')};{get(handles.MenuCampaign_4,'Label')};{get(handles.MenuCampaign_5,'Label')}]; |
---|
| 470 | check_dir=isempty(find(strcmp(DirFull,MenuCampaign))); |
---|
| 471 | if check_dir %insert the new campaign in the list if it is not found |
---|
| 472 | MenuCampaign(end)=[]; %suppress the last item |
---|
| 473 | MenuCampaign=[{DirFull};MenuCampaign];%insert the new campaign |
---|
| 474 | for ilist=1:numel(MenuCampaign) |
---|
| 475 | set(handles.(['MenuCampaign_' num2str(ilist)]),'Label',MenuCampaign{ilist}) |
---|
| 476 | end |
---|
| 477 | % save the list for future opening: |
---|
| 478 | dir_perso=prefdir; |
---|
| 479 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 480 | if exist(profil_perso,'file') |
---|
| 481 | save (profil_perso,'MenuCampaign','RootPath','-append'); %store the file names for future opening of uvmat |
---|
| 482 | else |
---|
| 483 | save (profil_perso,'MenuCampaign','RootPath','-V6'); %store the file names for future opening of uvmat |
---|
| 484 | end |
---|
| 485 | end |
---|
[2] | 486 | |
---|
[651] | 487 | %% display the selected field and related information |
---|
| 488 | if get(handles.CheckAppend,'Value') |
---|
| 489 | display_file_name(handles,fullfile(DirName,FileName),'append') |
---|
| 490 | else |
---|
| 491 | display_file_name(handles,fullfile(DirName,FileName),'one') |
---|
| 492 | end |
---|
| 493 | set(handles.MenuOpenCampaign,'ForegroundColor',[0 0 0]) |
---|
[2] | 494 | |
---|
| 495 | % -------------------------------------------------------------------- |
---|
[651] | 496 | function MenuCampaign_Callback(hObject, eventdata, handles) |
---|
| 497 | % -------------------------------------------------------------------- |
---|
| 498 | set(handles.MenuOpenCampaign,'ForegroundColor',[1 1 0]) |
---|
| 499 | OutPut=browse_data(get(hObject,'Label'));% open the GUI browse_data to get select a campaign dir, experiment and device |
---|
| 500 | if ~isfield(OutPut,'Campaign') |
---|
| 501 | return |
---|
| 502 | end |
---|
| 503 | DirName=fullfile(OutPut.Campaign,OutPut.Experiment{1},OutPut.DataSeries{1}); |
---|
| 504 | hdir=dir(DirName); %list files and dirs |
---|
| 505 | for ilist=1:numel(hdir) |
---|
| 506 | if ~isequal(hdir(ilist).isdir,1)%look for files, not dir |
---|
| 507 | FileName=hdir(ilist).name; |
---|
[784] | 508 | FileInfo=get_file_info(fullfile(DirName,FileName)); |
---|
[783] | 509 | switch FileInfo.FileType |
---|
[651] | 510 | case {'image','multimage','civx','civdata','netcdf'} |
---|
| 511 | break |
---|
| 512 | end |
---|
| 513 | end |
---|
| 514 | end |
---|
| 515 | if get(handles.CheckAppend,'Value') |
---|
| 516 | display_file_name(handles,fullfile(DirName,FileName),'append') |
---|
| 517 | else |
---|
| 518 | display_file_name(handles,fullfile(DirName,FileName),'one') |
---|
| 519 | end |
---|
| 520 | set(handles.MenuOpenCampaign,'ForegroundColor',[0 0 0]) |
---|
[2] | 521 | |
---|
| 522 | |
---|
[772] | 523 | % --- Executes when selected cell(s) is changed in InputTable. |
---|
| 524 | function InputTable_CellSelectionCallback(hObject, eventdata, handles) |
---|
| 525 | iline=[]; |
---|
| 526 | if ~isempty(eventdata.Indices) |
---|
| 527 | iline=eventdata.Indices(1); |
---|
[472] | 528 | end |
---|
[851] | 529 | set(handles.InputLine,'String',num2str(iline)); |
---|
| 530 | % set(handles.InputTable,'UserData',iline); |
---|
[472] | 531 | |
---|
| 532 | %------------------------------------------------------------------------ |
---|
[675] | 533 | % --- 'key_press_fcn:' function activated when a key is pressed on the keyboard |
---|
| 534 | %------------------------------------------------------------------------ |
---|
[772] | 535 | function InputTable_KeyPressFcn(hObject, eventdata, handles) |
---|
| 536 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color to indicate that input refresh is needed |
---|
[675] | 537 | xx=double(get(handles.series,'CurrentCharacter')); %get the keyboard character |
---|
[825] | 538 | if ~isempty(xx) |
---|
[851] | 539 | switch xx |
---|
| 540 | case 31 %downward arrow |
---|
| 541 | InputTable=get(handles.InputTable,'Data'); |
---|
| 542 | iline=str2double(get(handles.InputLine,'String')); |
---|
| 543 | if isequal(iline,size(InputTable,1))% arrow downward |
---|
| 544 | InputTable=[InputTable;InputTable(iline,:)];% create a new line as a copy of the last one |
---|
| 545 | set(handles.InputTable,'Data',InputTable); |
---|
| 546 | end |
---|
| 547 | case 127 %key 'Suppress' |
---|
| 548 | ClearLine_Callback(hObject, eventdata, handles) |
---|
| 549 | end |
---|
[675] | 550 | end |
---|
| 551 | |
---|
| 552 | %------------------------------------------------------------------------ |
---|
[472] | 553 | % --- Executes on button press in REFRESH. |
---|
| 554 | function REFRESH_Callback(hObject, eventdata, handles) |
---|
| 555 | %------------------------------------------------------------------------ |
---|
[408] | 556 | InputTable=get(handles.InputTable,'Data'); |
---|
[715] | 557 | set(handles.series,'Pointer','watch') % set the mouse pointer to 'watch' |
---|
[605] | 558 | set(handles.REFRESH,'BackgroundColor',[1 1 0])% set REFRESH button to yellow color (indicate activation) |
---|
[472] | 559 | drawnow |
---|
[643] | 560 | empty_line=false(size(InputTable,1),1); |
---|
| 561 | for iline=1:size(InputTable,1) |
---|
| 562 | empty_line(iline)= isempty(cell2mat(InputTable(iline,1:3))); |
---|
| 563 | end |
---|
[772] | 564 | if ~isempty(find(empty_line)); |
---|
| 565 | InputTable(empty_line,:)=[];%remove empty lines |
---|
| 566 | set(handles.InputTable,'Data',InputTable) |
---|
| 567 | ListTable={'MinIndex_i','MaxIndex_i','MinIndex_j','MaxIndex_j','PairString','TimeTable'}; |
---|
| 568 | for ilist=1:numel(ListTable) |
---|
| 569 | Table=get(handles.(ListTable{ilist}),'Data'); |
---|
| 570 | Table(empty_line,:)=[];%remove empty lines |
---|
| 571 | set(handles.(ListTable{ilist}),'Data',Table); |
---|
| 572 | end |
---|
| 573 | set(handles.series,'UserData',[])%refresh the stored info |
---|
| 574 | end |
---|
[643] | 575 | for iview=1:size(InputTable,1) |
---|
[472] | 576 | RootPath=fullfile(InputTable{iview,1},InputTable{iview,2}); |
---|
| 577 | if ~exist(RootPath,'dir') |
---|
| 578 | i1_series=[]; |
---|
[714] | 579 | RootPath=fileparts(RootPath); %will try the upper folder |
---|
| 580 | else %scan the input folder |
---|
[783] | 581 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,tild,FileInfo,MovieObject]=... |
---|
[472] | 582 | find_file_series(fullfile(InputTable{iview,1},InputTable{iview,2}),[InputTable{iview,3} InputTable{iview,4} InputTable{iview,5}]); |
---|
[446] | 583 | end |
---|
[714] | 584 | % if no file is found, open a browser |
---|
[472] | 585 | if isempty(i1_series) |
---|
[620] | 586 | fileinput=uigetfile_uvmat(['wrong input at line ' num2str(iview) ':pick a new input file'],RootPath); |
---|
| 587 | if isempty(fileinput) |
---|
[605] | 588 | set(handles.REFRESH,'BackgroundColor',[1 0 0])% set REFRESH back to red color |
---|
[620] | 589 | return |
---|
| 590 | else |
---|
| 591 | display_file_name(handles,fileinput,iview) |
---|
| 592 | end |
---|
[472] | 593 | else |
---|
[772] | 594 | update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,iview) |
---|
[472] | 595 | end |
---|
[446] | 596 | end |
---|
[844] | 597 | %% enable field and veltype menus, in accordance with the current action |
---|
| 598 | ActionName_Callback([],[], handles) |
---|
| 599 | |
---|
| 600 | %% set length of waitbar |
---|
| 601 | displ_time(handles) |
---|
| 602 | |
---|
[710] | 603 | set(handles.REFRESH,'BackgroundColor',[1 0 0])% set REFRESH button to red color (indicate activation finished) |
---|
[715] | 604 | set(handles.series,'Pointer','arrow') % set the mouse pointer to 'watch' |
---|
[408] | 605 | |
---|
| 606 | %------------------------------------------------------------------------ |
---|
[472] | 607 | % --- Function called when a new file is opened, either by series_OpeningFcn or by the browser |
---|
[851] | 608 | %------------------------------------------------------------------------ |
---|
[332] | 609 | % INPUT: |
---|
[472] | 610 | % handles: handles of elements in the GUI |
---|
[772] | 611 | % Param: structure of input parameters, including input file name and path |
---|
[609] | 612 | % iview: line index in the input table |
---|
[620] | 613 | % or 'one': refresh the list |
---|
[667] | 614 | % 'append': add a new line to the input table |
---|
[851] | 615 | function errormsg=display_file_name(handles,Param,iview) |
---|
| 616 | |
---|
[714] | 617 | set(handles.REFRESH,'BackgroundColor',[1 1 0])% set REFRESH button to yellow color (indicate activation) |
---|
| 618 | drawnow |
---|
| 619 | errormsg='';%default |
---|
[770] | 620 | if ischar(Param) |
---|
| 621 | fileinput=Param; |
---|
| 622 | else% input set when series is opened (called by the GUI uvmat) |
---|
| 623 | fileinput=Param.FileName; |
---|
| 624 | end |
---|
| 625 | |
---|
[408] | 626 | %% get the input root name, indices, file extension and nomenclature NomType |
---|
| 627 | if ~exist(fileinput,'file') |
---|
[714] | 628 | errormsg=['input file ' fileinput ' does not exist']; |
---|
| 629 | msgbox_uvmat('ERROR',errormsg) |
---|
[764] | 630 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color (refresh still needed) |
---|
[408] | 631 | return |
---|
| 632 | end |
---|
| 633 | |
---|
[648] | 634 | %% detect root name, nomenclature and indices in the input file name: |
---|
| 635 | [FilePath,FileName,FileExt]=fileparts(fileinput); |
---|
[770] | 636 | %%%%%%%%%%%%%%%%%% |
---|
| 637 | %TODO: case of input by uvmat: do not check agai the input seies %%%%%%% |
---|
| 638 | %%%%%%%%%%%%%%%%%%% |
---|
[648] | 639 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
---|
| 640 | % the root name and indices may be corrected by including the first index i1 if a corresponding xml file exists |
---|
[783] | 641 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,NomType,FileInfo,MovieObject,i1,i2,j1,j2]=find_file_series(FilePath,[FileName FileExt]); |
---|
| 642 | FileType=FileInfo.FileType; |
---|
[648] | 643 | if isempty(RootFile)&&isempty(i1_series) |
---|
| 644 | errormsg='no input file in the series'; |
---|
[714] | 645 | msgbox_uvmat('ERROR',errormsg) |
---|
[764] | 646 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color (end of activation) |
---|
[648] | 647 | return |
---|
| 648 | end |
---|
| 649 | if strcmp(FileType,'txt') |
---|
| 650 | edit(fileinput) |
---|
[764] | 651 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color (end of activation) |
---|
[648] | 652 | return |
---|
| 653 | elseif strcmp(FileType,'xml') |
---|
| 654 | editxml(fileinput) |
---|
[764] | 655 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color (end of activation) |
---|
[648] | 656 | return |
---|
| 657 | elseif strcmp(FileType,'figure') |
---|
| 658 | open(fileinput) |
---|
[764] | 659 | set(handles.REFRESH,'BackgroundColor',[1 0 1])% set REFRESH button to magenta color (end of activation) |
---|
[648] | 660 | return |
---|
| 661 | end |
---|
| 662 | |
---|
[332] | 663 | %% enable other menus and uicontrols |
---|
[651] | 664 | set(handles.MenuOpenCampaign,'Enable','on') |
---|
| 665 | set(handles.MenuCampaign_1,'Enable','on') |
---|
| 666 | set(handles.MenuCampaign_2,'Enable','on') |
---|
| 667 | set(handles.MenuCampaign_3,'Enable','on') |
---|
| 668 | set(handles.MenuCampaign_4,'Enable','on') |
---|
| 669 | set(handles.MenuCampaign_5,'Enable','on') |
---|
[332] | 670 | set(handles.RUN, 'Enable','On') |
---|
| 671 | set(handles.RUN,'BackgroundColor',[1 0 0])% set RUN button to red |
---|
[350] | 672 | set(handles.InputTable,'BackgroundColor',[1 1 0]) % set RootPath edit box to yellow |
---|
[332] | 673 | drawnow |
---|
| 674 | |
---|
[89] | 675 | |
---|
[376] | 676 | %% fill the list of file series |
---|
| 677 | InputTable=get(handles.InputTable,'Data'); |
---|
[620] | 678 | SeriesData=get(handles.series,'UserData'); |
---|
[472] | 679 | if strcmp(iview,'append') % display the input data as a new line in the table |
---|
[672] | 680 | iview=size(InputTable,1)+1;% the next line in InputTable becomes the current line |
---|
[620] | 681 | InputTable(iview,:)=[{RootPath},{SubDir},{RootFile},{NomType},{FileExt}]; |
---|
| 682 | elseif strcmp(iview,'one') % refresh the list of input file series |
---|
| 683 | iview=1; %the first line in InputTable becomes the current line |
---|
[672] | 684 | InputTable={'','','','',''}; |
---|
[620] | 685 | InputTable(iview,:)=[{RootPath},{SubDir},{RootFile},{NomType},{FileExt}]; |
---|
[775] | 686 | set(handles.TimeTable,'Data',[{''},{[]},{[]},{[]},{[]}]) |
---|
[635] | 687 | set(handles.MinIndex_i,'Data',[]) |
---|
| 688 | set(handles.MaxIndex_i,'Data',[]) |
---|
| 689 | set(handles.MinIndex_j,'Data',[]) |
---|
| 690 | set(handles.MaxIndex_j,'Data',[]) |
---|
[620] | 691 | set(handles.PairString,'Data',{''}) |
---|
[772] | 692 | SeriesData.CheckPair=0;%reset the list of input lines with pairs |
---|
[620] | 693 | SeriesData.i1_series={}; |
---|
| 694 | SeriesData.i2_series={}; |
---|
| 695 | SeriesData.j1_series={}; |
---|
| 696 | SeriesData.j2_series={}; |
---|
| 697 | SeriesData.FileType={}; |
---|
| 698 | SeriesData.FileInfo={}; |
---|
| 699 | SeriesData.Time={}; |
---|
[376] | 700 | end |
---|
[851] | 701 | if iview >1 |
---|
| 702 | set(handles.InputLine,'String',num2str(iview)) |
---|
| 703 | end |
---|
[376] | 704 | set(handles.InputTable,'Data',InputTable) |
---|
| 705 | |
---|
[472] | 706 | %% determine the selected reference field indices for pair display |
---|
[603] | 707 | if isempty(i1) |
---|
| 708 | i1=1; |
---|
[472] | 709 | end |
---|
[603] | 710 | if isempty(i2) |
---|
| 711 | i2=i1; |
---|
| 712 | end |
---|
| 713 | ref_i=floor((i1+i2)/2);% reference image number corresponding to the file |
---|
[767] | 714 | % set(handles.num_ref_i,'String',num2str(ref_i)); |
---|
[603] | 715 | if isempty(j1) |
---|
| 716 | j1=1; |
---|
[472] | 717 | end |
---|
[603] | 718 | if isempty(j2) |
---|
| 719 | j2=j1; |
---|
| 720 | end |
---|
| 721 | ref_j=floor((j1+j2)/2);% reference image number corresponding to the file |
---|
[767] | 722 | SeriesData.ref_i=ref_i; |
---|
| 723 | SeriesData.ref_j=ref_j; |
---|
[472] | 724 | |
---|
[714] | 725 | %% update first and last indices if they do not exist |
---|
| 726 | Param=read_GUI(handles.series); |
---|
| 727 | first_j=[]; |
---|
| 728 | if isfield(Param.IndexRange,'first_j'); first_j=Param.IndexRange.first_j; end |
---|
| 729 | last_j=[]; |
---|
| 730 | if isfield(Param.IndexRange,'last_j'); last_j=Param.IndexRange.last_j; end |
---|
[715] | 731 | PairString=''; |
---|
| 732 | if isfield(Param.IndexRange,'PairString'); PairString=Param.IndexRange.PairString; end |
---|
| 733 | [i1,i2,j1,j2] = get_file_index(Param.IndexRange.first_i,first_j,PairString); |
---|
[714] | 734 | FirstFileName=fullfile_uvmat(Param.InputTable{1,1},Param.InputTable{1,2},Param.InputTable{1,3},... |
---|
| 735 | Param.InputTable{1,5},Param.InputTable{1,4},i1,i2,j1,j2); |
---|
| 736 | if ~exist(FirstFileName,'file') |
---|
| 737 | set(handles.num_first_i,'String',num2str(ref_i)) |
---|
| 738 | set(handles.num_first_j,'String',num2str(ref_j)) |
---|
| 739 | end |
---|
[715] | 740 | [i1,i2,j1,j2] = get_file_index(Param.IndexRange.last_i,last_j,PairString); |
---|
[714] | 741 | LastFileName=fullfile_uvmat(Param.InputTable{1,1},Param.InputTable{1,2},Param.InputTable{1,3},... |
---|
| 742 | Param.InputTable{1,5},Param.InputTable{1,4},i1,i2,j1,j2); |
---|
| 743 | if ~exist(LastFileName,'file') |
---|
| 744 | set(handles.num_last_i,'String',num2str(ref_i)) |
---|
| 745 | set(handles.num_last_j,'String',num2str(ref_j)) |
---|
| 746 | end |
---|
| 747 | |
---|
[472] | 748 | %% update the list of recent files in the menubar and save it for future opening |
---|
| 749 | MenuFile=[{get(handles.MenuFile_1,'Label')};{get(handles.MenuFile_2,'Label')};... |
---|
| 750 | {get(handles.MenuFile_3,'Label')};{get(handles.MenuFile_4,'Label')};{get(handles.MenuFile_5,'Label')}]; |
---|
| 751 | str_find=strcmp(fileinput,MenuFile); |
---|
| 752 | if isempty(find(str_find,1)) |
---|
| 753 | MenuFile=[{fileinput};MenuFile];%insert the current file if not already in the list |
---|
| 754 | end |
---|
| 755 | for ifile=1:min(length(MenuFile),5) |
---|
| 756 | eval(['set(handles.MenuFile_' num2str(ifile) ',''Label'',MenuFile{ifile});']) |
---|
| 757 | end |
---|
| 758 | dir_perso=prefdir; |
---|
| 759 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 760 | if exist(profil_perso,'file') |
---|
| 761 | save (profil_perso,'MenuFile','-append'); %store the file names for future opening of uvmat |
---|
| 762 | else |
---|
| 763 | save (profil_perso,'MenuFile','-V6'); %store the file names for future opening of uvmat |
---|
| 764 | end |
---|
[609] | 765 | % save the opened file to initiate future opening |
---|
[620] | 766 | SeriesData.RefFile{iview}=fileinput;% reference opening file for line iview |
---|
| 767 | SeriesData.Ref_i1=i1; |
---|
| 768 | SeriesData.Ref_i2=i2; |
---|
| 769 | SeriesData.Ref_j1=j1; |
---|
| 770 | SeriesData.Ref_j2=j2; |
---|
[609] | 771 | set(handles.series,'UserData',SeriesData) |
---|
[472] | 772 | |
---|
| 773 | set(handles.InputTable,'BackgroundColor',[1 1 1]) |
---|
| 774 | |
---|
| 775 | %% initiate input file series and refresh the current field view: |
---|
[772] | 776 | update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,iview); |
---|
[844] | 777 | %% enable field and veltype menus, in accordance with the current action |
---|
| 778 | ActionName_Callback([],[], handles) |
---|
| 779 | |
---|
| 780 | %% set length of waitbar |
---|
| 781 | displ_time(handles) |
---|
| 782 | |
---|
[714] | 783 | set(handles.REFRESH,'BackgroundColor',[1 0 0])% set REFRESH button to red color (end of activation) |
---|
[472] | 784 | |
---|
| 785 | %------------------------------------------------------------------------ |
---|
| 786 | % --- Update information about a new field series (indices to scan, timing, |
---|
| 787 | % calibration from an xml file |
---|
[772] | 788 | function update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,VideoObject,iview) |
---|
[472] | 789 | %------------------------------------------------------------------------ |
---|
| 790 | InputTable=get(handles.InputTable,'Data'); |
---|
| 791 | |
---|
[620] | 792 | %% display the min and max indices for the whole file series |
---|
[554] | 793 | if size(i1_series,2)==2 && min(min(i1_series(:,1,:)))==0 |
---|
[609] | 794 | MinIndex_j=1;% index j set to 1 by default |
---|
[554] | 795 | MaxIndex_j=1; |
---|
[635] | 796 | MinIndex_i=find(i1_series(1,2,:), 1 )-1;% min ref index i detected in the series (corresponding to the first non-zero value of i1_series, except for zero index) |
---|
| 797 | MaxIndex_i=find(i1_series(1,2,:),1,'last' )-1;%max ref index i detected in the series (corresponding to the last non-zero value of i1_series) |
---|
[526] | 798 | else |
---|
[635] | 799 | ref_i=squeeze(max(i1_series(1,:,:),[],2));% select ref_j index for each ref_i |
---|
| 800 | ref_j=squeeze(max(j1_series(1,:,:),[],3));% select ref_i index for each ref_j |
---|
| 801 | MinIndex_i=min(find(ref_i))-1; |
---|
| 802 | MaxIndex_i=max(find(ref_i))-1; |
---|
| 803 | MaxIndex_j=max(find(ref_j))-1; |
---|
| 804 | MinIndex_j=min(find(ref_j))-1; |
---|
| 805 | diff_j_max=diff(ref_j); |
---|
| 806 | diff_i_max=diff(ref_i); |
---|
[609] | 807 | if ~isempty(diff_i_max) && isequal (diff_i_max,diff_i_max(1)*ones(size(diff_i_max))) |
---|
| 808 | set(handles.num_incr_i,'String',num2str(diff_i_max(1)))% detect an increment to dispaly by default |
---|
[526] | 809 | end |
---|
[757] | 810 | if ~isempty(diff_j_max) && isequal (diff_j_max,diff_j_max(1)*ones(size(diff_j_max))) |
---|
[526] | 811 | set(handles.num_incr_j,'String',num2str(diff_j_max(1))) |
---|
| 812 | end |
---|
| 813 | end |
---|
[554] | 814 | if isequal(MinIndex_i,-1) |
---|
| 815 | MinIndex_i=0; |
---|
| 816 | end |
---|
| 817 | if isequal(MinIndex_j,-1) |
---|
| 818 | MinIndex_j=0; |
---|
| 819 | end |
---|
[667] | 820 | MinIndex_i_table=get(handles.MinIndex_i,'Data');%retrieve the min indices in the table MinIndex |
---|
| 821 | MinIndex_j_table=get(handles.MinIndex_j,'Data');%retrieve the min indices in the table MinIndex |
---|
| 822 | MaxIndex_i_table=get(handles.MaxIndex_i,'Data');%retrieve the min indices in the table MinIndex |
---|
| 823 | MaxIndex_j_table=get(handles.MaxIndex_j,'Data');%retrieve the min indices in the table MinIndex |
---|
[757] | 824 | if ~isempty(MinIndex_i)&&~isempty(MaxIndex_i) |
---|
[772] | 825 | MinIndex_i_table(iview,1)=MinIndex_i; |
---|
| 826 | MaxIndex_i_table(iview,1)=MaxIndex_i; |
---|
[757] | 827 | end |
---|
| 828 | if ~isempty(MinIndex_j)&&~isempty(MaxIndex_j) |
---|
[772] | 829 | MinIndex_j_table(iview,1)=MinIndex_j; |
---|
| 830 | MaxIndex_j_table(iview,1)=MaxIndex_j; |
---|
[757] | 831 | end |
---|
[667] | 832 | set(handles.MinIndex_i,'Data',MinIndex_i_table)%display the min indices in the table MinIndex |
---|
| 833 | set(handles.MinIndex_j,'Data',MinIndex_j_table)%display the max indices in the table MaxIndex |
---|
| 834 | set(handles.MaxIndex_i,'Data',MaxIndex_i_table)%display the min indices in the table MinIndex |
---|
| 835 | set(handles.MaxIndex_j,'Data',MaxIndex_j_table)%display the max indices in the table MaxIndex |
---|
[772] | 836 | SeriesData=get(handles.series,'UserData'); |
---|
[460] | 837 | |
---|
[620] | 838 | %% adjust the first and last indices for the selected series, only if requested by the bounds |
---|
[609] | 839 | % i index, compare input to min index i |
---|
| 840 | first_i=str2num(get(handles.num_first_i,'String'));%retrieve previous first i |
---|
[772] | 841 | % ref_i=str2num(get(handles.num_ref_i,'String'));%index i given by the input field |
---|
| 842 | ref_i=1; |
---|
| 843 | if isfield(SeriesData,'ref_i') |
---|
| 844 | ref_i=SeriesData.ref_i; |
---|
| 845 | end |
---|
[460] | 846 | if isempty(first_i) |
---|
[609] | 847 | first_i=ref_i;% first_i updated by the input value |
---|
[460] | 848 | elseif first_i < MinIndex_i |
---|
[609] | 849 | first_i=MinIndex_i; % first_i set to the min i index (restricted by oter input lines) |
---|
[526] | 850 | elseif first_i >MaxIndex_i |
---|
[609] | 851 | first_i=MaxIndex_i;% first_i set to the max i index (restricted by oter input lines) |
---|
[460] | 852 | end |
---|
[609] | 853 | % j index, compare input to min index j |
---|
[460] | 854 | first_j=str2num(get(handles.num_first_j,'String')); |
---|
[772] | 855 | ref_j=1; |
---|
| 856 | if isfield(SeriesData,'ref_j') |
---|
| 857 | ref_j=SeriesData.ref_j; |
---|
| 858 | end |
---|
[460] | 859 | if isempty(first_j) |
---|
[609] | 860 | first_j=ref_j;% first_j updated by the input value |
---|
[460] | 861 | elseif first_j<MinIndex_j |
---|
[609] | 862 | first_j=MinIndex_j; % first_j set to the min j index (restricted by oter input lines) |
---|
[526] | 863 | elseif first_j >MaxIndex_j |
---|
[609] | 864 | first_j=MaxIndex_j; % first_j set to the max j index (restricted by oter input lines) |
---|
[460] | 865 | end |
---|
[609] | 866 | % i index, compare input to max index i |
---|
[460] | 867 | last_i=str2num(get(handles.num_last_i,'String')); |
---|
| 868 | if isempty(last_i) |
---|
| 869 | last_i=ref_i; |
---|
| 870 | elseif last_i > MaxIndex_i |
---|
| 871 | last_i=MaxIndex_i; |
---|
[526] | 872 | elseif last_i<first_i |
---|
| 873 | last_i=first_i; |
---|
[460] | 874 | end |
---|
[609] | 875 | % j index, compare input to max index j |
---|
| 876 | last_j=str2num(get(handles.num_last_j,'String')); |
---|
[460] | 877 | if isempty(last_j) |
---|
| 878 | last_j=ref_j; |
---|
| 879 | elseif last_j>MaxIndex_j |
---|
| 880 | last_j=MaxIndex_j; |
---|
[609] | 881 | elseif last_j<first_j |
---|
| 882 | last_j=first_j; |
---|
[460] | 883 | end |
---|
| 884 | set(handles.num_first_i,'String',num2str(first_i)); |
---|
| 885 | set(handles.num_first_j,'String',num2str(first_j)); |
---|
| 886 | set(handles.num_last_i,'String',num2str(last_i)); |
---|
| 887 | set(handles.num_last_j,'String',num2str(last_j)); |
---|
| 888 | |
---|
[620] | 889 | %% number of slices set by default |
---|
| 890 | NbSlice=1;%default |
---|
[772] | 891 | % read value set by the first series for the append mode (iwiew >1) |
---|
[620] | 892 | if iview>1 && strcmp(get(handles.num_NbSlice,'Visible'),'on') |
---|
| 893 | NbSlice=str2num(get(handles.num_NbSlice,'String')); |
---|
[408] | 894 | end |
---|
| 895 | |
---|
[775] | 896 | %% default time settings |
---|
[620] | 897 | TimeUnit=''; |
---|
[772] | 898 | % read value set by the first series for the append mode (iwiew >1) |
---|
[620] | 899 | if iview>1 |
---|
| 900 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
| 901 | end |
---|
[775] | 902 | TimeName=''; |
---|
[620] | 903 | Time=[];%default |
---|
[775] | 904 | TimeMin=[]; |
---|
| 905 | TimeFirst=[]; |
---|
| 906 | TimeLast=[]; |
---|
| 907 | TimeMax=[]; |
---|
[620] | 908 | |
---|
| 909 | %% read image documentation file if found |
---|
[408] | 910 | XmlData=[]; |
---|
[620] | 911 | check_calib=0; |
---|
[525] | 912 | XmlFileName=find_imadoc(InputTable{iview,1},InputTable{iview,2},InputTable{iview,3},InputTable{iview,5}); |
---|
| 913 | if ~isempty(XmlFileName) |
---|
[620] | 914 | [XmlData,errormsg]=imadoc2struct(XmlFileName); |
---|
| 915 | if ~isempty(errormsg) |
---|
| 916 | msgbox_uvmat('WARNING',['error in reading ' XmlFileName ': ' errormsg]); |
---|
| 917 | end |
---|
| 918 | % read time if available |
---|
| 919 | if isfield(XmlData,'Time') |
---|
[775] | 920 | Time=XmlData.Time; |
---|
| 921 | TimeName='xml'; |
---|
[620] | 922 | end |
---|
| 923 | if isfield(XmlData,'Camera') |
---|
| 924 | if isfield(XmlData.Camera,'NbSlice')&& ~isempty(XmlData.Camera.NbSlice) |
---|
| 925 | if iview>1 && ~isempty(NbSlice) && ~strcmp(NbSlice,XmlData.Camera.NbSlice) |
---|
| 926 | msgbox_uvmat('WARNING','inconsistent number of slices with the first field series'); |
---|
| 927 | end |
---|
| 928 | NbSlice=XmlData.Camera.NbSlice;% Nbre of slices from camera |
---|
[408] | 929 | end |
---|
[620] | 930 | if isfield(XmlData.Camera,'TimeUnit')&& ~isempty(XmlData.Camera.TimeUnit) |
---|
| 931 | if iview>1 && ~isempty(TimeUnit) && ~strcmp(TimeUnit,XmlData.Camera.TimeUnit) |
---|
| 932 | msgbox_uvmat('WARNING','inconsistent time unit with the first field series'); |
---|
| 933 | end |
---|
| 934 | TimeUnit=XmlData.Camera.TimeUnit; |
---|
[408] | 935 | end |
---|
[620] | 936 | end |
---|
| 937 | % number of slices |
---|
| 938 | if isfield(XmlData,'GeometryCalib') |
---|
| 939 | check_calib=1; |
---|
| 940 | if isfield(XmlData.GeometryCalib,'SliceCoord') |
---|
| 941 | siz=size(XmlData.GeometryCalib.SliceCoord); |
---|
| 942 | if siz(1)>1 |
---|
| 943 | if iview>1 && ~isempty(NbSlice) && ~strcmp(NbSlice,siz(1)) |
---|
| 944 | msgbox_uvmat('WARNING','inconsistent number of Z indices with the first field series'); |
---|
[408] | 945 | end |
---|
[620] | 946 | NbSlice=siz(1); |
---|
[408] | 947 | end |
---|
| 948 | end |
---|
[620] | 949 | end |
---|
| 950 | set(handles.num_NbSlice,'String',num2str(NbSlice)) |
---|
[408] | 951 | end |
---|
| 952 | |
---|
[775] | 953 | %% read timing from the current file (prioritary) |
---|
| 954 | if ~isempty(VideoObject)% case of movies |
---|
| 955 | imainfo=get(VideoObject); |
---|
| 956 | if isempty(j1_series); %frame index along i |
---|
| 957 | Time=zeros(imainfo.NumberOfFrames+1,2); |
---|
| 958 | Time(:,2)=(0:1/imainfo.FrameRate:(imainfo.NumberOfFrames)/imainfo.FrameRate)'; |
---|
| 959 | else |
---|
| 960 | Time=[0;ones(size(i1_series,3)-1,1)]*(0:1/imainfo.FrameRate:(imainfo.NumberOfFrames)/imainfo.FrameRate); |
---|
[620] | 961 | end |
---|
[775] | 962 | TimeName='video'; |
---|
| 963 | end |
---|
[620] | 964 | |
---|
[775] | 965 | |
---|
| 966 | %% determine the min and max times: case of Netcdf files will be treated later in FieldName_Callback |
---|
| 967 | if ~isempty(TimeName) |
---|
| 968 | TimeMin=Time(MinIndex_i+1,MinIndex_j+1); |
---|
[620] | 969 | if size(Time)>=[first_i+1 first_j+1] |
---|
[775] | 970 | TimeFirst=Time(first_i+1,first_j+1); |
---|
[456] | 971 | end |
---|
[620] | 972 | if size(Time)>=[last_i+1 last_j+1] |
---|
[775] | 973 | TimeLast=Time(last_i+1,last_j+1); |
---|
[408] | 974 | end |
---|
[620] | 975 | if size(Time)>=[MaxIndex_i+1 MaxIndex_j+1]; |
---|
[775] | 976 | TimeMax=Time(MaxIndex_i+1,MaxIndex_j+1); |
---|
[599] | 977 | end |
---|
[408] | 978 | end |
---|
| 979 | |
---|
[775] | 980 | %% update the time table |
---|
| 981 | TimeTable=get(handles.TimeTable,'Data'); |
---|
| 982 | TimeTable{iview,1}=TimeName; |
---|
| 983 | TimeTable{iview,2}=TimeMin; |
---|
| 984 | TimeTable{iview,3}=TimeFirst; |
---|
| 985 | TimeTable{iview,4}=TimeLast; |
---|
| 986 | TimeTable{iview,5}=TimeMax; |
---|
| 987 | set(handles.TimeTable,'Data',TimeTable) |
---|
| 988 | |
---|
[472] | 989 | %% update the series info in 'UserData' |
---|
[408] | 990 | SeriesData.i1_series{iview}=i1_series; |
---|
| 991 | SeriesData.i2_series{iview}=i2_series; |
---|
| 992 | SeriesData.j1_series{iview}=j1_series; |
---|
| 993 | SeriesData.j2_series{iview}=j2_series; |
---|
[772] | 994 | SeriesData.FileType{iview}=FileInfo.FileType; |
---|
[599] | 995 | SeriesData.FileInfo{iview}=FileInfo; |
---|
[615] | 996 | SeriesData.Time{iview}=Time; |
---|
[775] | 997 | % if ~isempty(TimeName) |
---|
| 998 | % SeriesData.TimeSource=TimeSource; |
---|
| 999 | % end |
---|
[599] | 1000 | if check_calib |
---|
[620] | 1001 | SeriesData.GeometryCalib{iview}=XmlData.GeometryCalib; |
---|
[599] | 1002 | end |
---|
[408] | 1003 | set(handles.series,'UserData',SeriesData) |
---|
| 1004 | |
---|
[620] | 1005 | %% update pair menus |
---|
[772] | 1006 | hset_pair=findobj(allchild(0),'Tag','set_pairs'); |
---|
| 1007 | if ~isempty(hset_pair), delete(hset_pair); end % delete the GUI set_pair if opened |
---|
| 1008 | CheckPair= ~isempty(i2_series)||~isempty(j2_series); % check whether index pairs need to be defined |
---|
| 1009 | PairString=get(handles.PairString,'Data'); |
---|
| 1010 | if CheckPair% if pairs need to be display for line iview |
---|
| 1011 | [ModeMenu,ModeValue]=update_mode(i1_series,i2_series,j2_series); |
---|
[775] | 1012 | Menu=update_listpair(i1_series,i2_series,j1_series,j2_series,ModeMenu{ModeValue},Time,TimeUnit,ref_i,ref_j,TimeName,InputTable(iview,:),FileInfo); |
---|
[772] | 1013 | PairString{iview,1}=Menu{1}; |
---|
| 1014 | else |
---|
| 1015 | PairString{iview,1}='';%no pair for #iview |
---|
[472] | 1016 | end |
---|
[772] | 1017 | set(handles.PairString,'Data',PairString) |
---|
| 1018 | if isempty(find(cellfun('isempty',get(handles.PairString,'Data'))==0, 1))% if all lines of pairs are empty |
---|
| 1019 | set(handles.PairString,'Visible','off') |
---|
| 1020 | set(handles.SetPairs,'Visible','off') |
---|
| 1021 | else |
---|
| 1022 | set(handles.PairString,'Visible','on') |
---|
| 1023 | set(handles.SetPairs,'Visible','on') |
---|
| 1024 | end |
---|
[472] | 1025 | |
---|
[772] | 1026 | |
---|
[477] | 1027 | %% display the set of existing files as an image |
---|
| 1028 | set(handles.FileStatus,'Units','pixels') |
---|
| 1029 | Position=get(handles.FileStatus,'Position'); |
---|
| 1030 | set(handles.FileStatus,'Units','normalized') |
---|
[719] | 1031 | %xI=0.5:Position(3)-0.5; |
---|
[477] | 1032 | nbview=numel(SeriesData.i1_series); |
---|
[643] | 1033 | j_max=cell(1,nbview); |
---|
| 1034 | MaxIndex_i=ones(1,nbview);%default |
---|
| 1035 | MinIndex_i=ones(1,nbview);%default |
---|
[772] | 1036 | for iline=1:nbview |
---|
| 1037 | pair_max=squeeze(max(SeriesData.i1_series{iline},[],1)); %max on pair index |
---|
| 1038 | j_max{iline}=max(pair_max,[],1);%max on j index |
---|
| 1039 | if ~isempty(j_max{iline}) |
---|
| 1040 | MaxIndex_i(iline)=max(find(j_max{iline}))-1;% max ref index i |
---|
| 1041 | MinIndex_i(iline)=min(find(j_max{iline}))-1;% min ref index i |
---|
[757] | 1042 | end |
---|
[477] | 1043 | end |
---|
[643] | 1044 | MinIndex_i=min(MinIndex_i); |
---|
| 1045 | MaxIndex_i=max(MaxIndex_i); |
---|
| 1046 | range_index=MaxIndex_i-MinIndex_i+1; |
---|
[477] | 1047 | range_y=max(1,floor(Position(4)/nbview)); |
---|
[643] | 1048 | npx=floor(Position(3)); |
---|
| 1049 | file_indices=MinIndex_i+floor(((0.5:npx-0.5)/npx)*range_index)+1; |
---|
| 1050 | CData=zeros(nbview*range_y,npx);% initiate the image representing the existing files |
---|
[772] | 1051 | for iline=1:nbview |
---|
| 1052 | ind_y=1+(iline-1)*range_y:iline*range_y; |
---|
[643] | 1053 | LineData=zeros(size(file_indices)); |
---|
[772] | 1054 | file_select=file_indices(file_indices<=numel(j_max{iline})); |
---|
| 1055 | ind_select=find(file_indices<=numel(j_max{iline})); |
---|
| 1056 | LineData(ind_select)=j_max{iline}(file_select)~=0; |
---|
[477] | 1057 | CData(ind_y,:)=ones(size(ind_y'))*LineData; |
---|
| 1058 | end |
---|
[643] | 1059 | CData=cat(3,zeros(size(CData)),CData,zeros(size(CData)));%make color images r=0,g,b=0 |
---|
[477] | 1060 | set(handles.FileStatus,'CData',CData); |
---|
| 1061 | |
---|
[772] | 1062 | %-----------------------------------------------------------guide ------------- |
---|
| 1063 | %------------------------------------------------------------------------ |
---|
| 1064 | % III - FUNCTIONS ASSOCIATED TO THE FRAME IndexRange |
---|
| 1065 | %------------------------------------------------------------------------ |
---|
| 1066 | |
---|
| 1067 | |
---|
| 1068 | % ---- determine the menu to put in mode and advice a default choice |
---|
| 1069 | %------------------------------------------------------------------------ |
---|
| 1070 | function [ModeMenu,ModeValue]=update_mode(i1_series,i2_series,j2_series) |
---|
| 1071 | %------------------------------------------------------------------------ |
---|
| 1072 | ModeMenu={''}; |
---|
| 1073 | if isempty(j2_series)% no j pair |
---|
| 1074 | ModeValue=1; |
---|
| 1075 | if ~isempty(i2_series) |
---|
| 1076 | ModeMenu={'series(Di)'}; % pair menu with only option Di |
---|
| 1077 | end |
---|
| 1078 | else %existence of j pairs |
---|
| 1079 | pair_max=squeeze(max(i1_series,[],1)); %max on pair index |
---|
| 1080 | j_max=max(pair_max,[],1); |
---|
| 1081 | MaxIndex_i=find(j_max, 1, 'last' )-1;% max ref index i |
---|
| 1082 | MinIndex_i=find(j_max, 1 )-1;% min ref index i |
---|
| 1083 | i_max=max(pair_max,[],2); |
---|
| 1084 | MaxIndex_j=find(i_max, 1, 'last' )-1;% max ref index i |
---|
| 1085 | MinIndex_j=find(i_max, 1 )-1;% min ref index i |
---|
| 1086 | if MaxIndex_j==MinIndex_j |
---|
| 1087 | ModeValue=1; |
---|
| 1088 | ModeMenu={'bursts'}; |
---|
| 1089 | elseif MaxIndex_i==MinIndex_i |
---|
| 1090 | ModeValue=1; |
---|
| 1091 | ModeMenu={'series(Dj)'}; |
---|
| 1092 | else |
---|
| 1093 | ModeMenu={'bursts';'series(Dj)'}; |
---|
| 1094 | if (MaxIndex_j-MinIndex_j)>10 |
---|
| 1095 | ModeValue=2;%set mode to series(Dj) if more than 10 j values |
---|
[526] | 1096 | else |
---|
[772] | 1097 | ModeValue=1; |
---|
[771] | 1098 | end |
---|
| 1099 | end |
---|
[772] | 1100 | end |
---|
[408] | 1101 | |
---|
[772] | 1102 | |
---|
[446] | 1103 | %------------------------------------------------------------------------ |
---|
[775] | 1104 | function displ_pair=update_listpair(i1_series,i2_series,j1_series,j2_series,mode,time,TimeUnit,ref_i,ref_j,TimeName,InputTable,FileInfo) |
---|
[772] | 1105 | %------------------------------------------------------------------------ |
---|
| 1106 | displ_pair={}; |
---|
| 1107 | if isempty(TimeUnit) |
---|
| 1108 | dtunit='e-03'; |
---|
| 1109 | else |
---|
| 1110 | dtunit=['m' TimeUnit]; |
---|
| 1111 | end |
---|
| 1112 | switch mode |
---|
| 1113 | case 'series(Di)' |
---|
| 1114 | diff_i=i2_series-i1_series; |
---|
| 1115 | min_diff=min(diff_i(diff_i>0)); |
---|
| 1116 | max_diff=max(diff_i(diff_i>0)); |
---|
| 1117 | for ipair=min_diff:max_diff |
---|
| 1118 | if numel(diff_i(diff_i==ipair))>0 |
---|
| 1119 | pair_string=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2)) ]; |
---|
| 1120 | if ~isempty(time) |
---|
| 1121 | if ref_i<=floor(ipair/2) |
---|
| 1122 | ref_i=floor(ipair/2)+1;% shift ref_i to get the first pair |
---|
| 1123 | end |
---|
| 1124 | Dt=time(ref_i+ceil(ipair/2),ref_j)-time(ref_i-floor(ipair/2),ref_j); |
---|
| 1125 | pair_string=[pair_string ', Dt=' num2str(Dt) ' ' dtunit]; |
---|
| 1126 | end |
---|
| 1127 | displ_pair=[displ_pair;{pair_string}]; |
---|
| 1128 | end |
---|
| 1129 | end |
---|
| 1130 | if ~isempty(displ_pair) |
---|
| 1131 | displ_pair=[displ_pair;{'Di=*|*'}]; |
---|
| 1132 | end |
---|
| 1133 | case 'series(Dj)' |
---|
| 1134 | if isempty(j2_series) |
---|
| 1135 | msgbox_uvmat('ERROR','no j1-j2 pair available') |
---|
| 1136 | return |
---|
| 1137 | end |
---|
| 1138 | diff_j=j2_series-j1_series; |
---|
| 1139 | min_diff=min(diff_j(diff_j>0)); |
---|
| 1140 | max_diff=max(diff_j(diff_j>0)); |
---|
| 1141 | for ipair=min_diff:max_diff |
---|
| 1142 | if numel(diff_j(diff_j==ipair))>0 |
---|
| 1143 | pair_string=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2)) ]; |
---|
| 1144 | if ~isempty(time) |
---|
| 1145 | if ref_j<=floor(ipair/2) |
---|
| 1146 | ref_j=floor(ipair/2)+1;% shift ref_i to get the first pair |
---|
| 1147 | end |
---|
| 1148 | Dt=time(ref_i,ref_j+ceil(ipair/2))-time(ref_i,ref_j-floor(ipair/2)); |
---|
| 1149 | pair_string=[pair_string ', Dt=' num2str(Dt) ' ' dtunit]; |
---|
| 1150 | end |
---|
| 1151 | displ_pair=[displ_pair;{pair_string}]; |
---|
| 1152 | end |
---|
| 1153 | end |
---|
| 1154 | if ~isempty(displ_pair) |
---|
| 1155 | displ_pair=[displ_pair;{'Dj=*|*'}]; |
---|
| 1156 | end |
---|
| 1157 | case 'bursts' |
---|
| 1158 | if isempty(j2_series) |
---|
| 1159 | msgbox_uvmat('ERROR','no j1-j2 pair available') |
---|
| 1160 | return |
---|
| 1161 | end |
---|
| 1162 | %diff_j=j2_series-j1_series; |
---|
| 1163 | min_j1=min(j1_series(j1_series>0)); |
---|
| 1164 | max_j1=max(j1_series(j1_series>0)); |
---|
| 1165 | min_j2=min(j2_series(j2_series>0)); |
---|
| 1166 | max_j2=max(j2_series(j2_series>0)); |
---|
| 1167 | for pair1=min_j1:min(max_j1,min_j1+20) |
---|
| 1168 | for pair2=min_j2:min(max_j2,min_j2+20) |
---|
| 1169 | if numel(j1_series(j1_series==pair1))>0 && numel(j2_series(j2_series==pair2))>0 |
---|
| 1170 | pair_string=['j= ' num2str(pair1) '-' num2str(pair2)]; |
---|
[775] | 1171 | [TimeValue,DtValue]=get_time(ref_i,[],pair_string,InputTable,FileInfo,TimeName,'Dt'); |
---|
| 1172 | %Dt=time(ref_i,pair2+1)-time(ref_i,pair1+1); |
---|
| 1173 | pair_string=[pair_string ', Dt=' num2str(DtValue) ' ' dtunit]; |
---|
[772] | 1174 | displ_pair=[displ_pair;{pair_string}]; |
---|
| 1175 | end |
---|
| 1176 | end |
---|
| 1177 | end |
---|
| 1178 | if ~isempty(displ_pair) |
---|
| 1179 | displ_pair=[displ_pair;{'j=*-*'}]; |
---|
| 1180 | end |
---|
| 1181 | end |
---|
| 1182 | |
---|
| 1183 | %------------------------------------------------------------------------ |
---|
[446] | 1184 | function num_first_i_Callback(hObject, eventdata, handles) |
---|
| 1185 | %------------------------------------------------------------------------ |
---|
| 1186 | num_last_i_Callback(hObject, eventdata, handles) |
---|
[408] | 1187 | |
---|
| 1188 | %------------------------------------------------------------------------ |
---|
[446] | 1189 | function num_last_i_Callback(hObject, eventdata, handles) |
---|
| 1190 | %------------------------------------------------------------------------ |
---|
| 1191 | SeriesData=get(handles.series,'UserData'); |
---|
| 1192 | if ~isfield(SeriesData,'Time') |
---|
| 1193 | SeriesData.Time{1}=[]; |
---|
| 1194 | end |
---|
| 1195 | displ_time(handles); |
---|
| 1196 | |
---|
| 1197 | %------------------------------------------------------------------------ |
---|
| 1198 | function num_first_j_Callback(hObject, eventdata, handles) |
---|
| 1199 | %------------------------------------------------------------------------ |
---|
| 1200 | num_last_j_Callback(hObject, eventdata, handles) |
---|
| 1201 | |
---|
| 1202 | %------------------------------------------------------------------------ |
---|
| 1203 | function num_last_j_Callback(hObject, eventdata, handles) |
---|
| 1204 | %------------------------------------------------------------------------ |
---|
[773] | 1205 | % first_j=str2num(get(handles.num_first_j,'String')); |
---|
| 1206 | % last_j=str2num(get(handles.num_last_j,'String')); |
---|
| 1207 | % ref_j=ceil((first_j+last_j)/2); |
---|
| 1208 | % set(handles.num_ref_j,'String', num2str(ref_j)) |
---|
| 1209 | % num_ref_j_Callback(hObject, eventdata, handles) |
---|
[446] | 1210 | SeriesData=get(handles.series,'UserData'); |
---|
| 1211 | if ~isfield(SeriesData,'Time') |
---|
| 1212 | SeriesData.Time{1}=[]; |
---|
| 1213 | end |
---|
| 1214 | displ_time(handles); |
---|
| 1215 | |
---|
| 1216 | %------------------------------------------------------------------------ |
---|
| 1217 | % ---- find the times corresponding to the first and last indices of a series |
---|
| 1218 | function displ_time(handles) |
---|
| 1219 | %------------------------------------------------------------------------ |
---|
| 1220 | SeriesData=get(handles.series,'UserData');% |
---|
[770] | 1221 | if ~isfield(SeriesData,'Time') |
---|
| 1222 | return |
---|
| 1223 | end |
---|
[714] | 1224 | PairString=get(handles.PairString,'Data'); |
---|
| 1225 | ref_i_1=str2num(get(handles.num_first_i,'String'));%first reference index |
---|
| 1226 | ref_i_2=str2num(get(handles.num_last_i,'String'));%last reference index |
---|
| 1227 | ref_j_1=[];ref_j_2=[]; |
---|
| 1228 | if strcmp(get(handles.num_first_j,'Visible'),'on') |
---|
| 1229 | ref_j_1=str2num(get(handles.num_first_j,'String')); |
---|
| 1230 | ref_j_2=str2num(get(handles.num_last_j,'String')); |
---|
| 1231 | end |
---|
| 1232 | [i1_1,i2_1,j1_1,j2_1] = get_file_index(ref_i_1,ref_j_1,PairString); |
---|
| 1233 | [i1_2,i2_2,j1_2,j2_2] = get_file_index(ref_i_2,ref_j_2,PairString); |
---|
[446] | 1234 | TimeTable=get(handles.TimeTable,'Data'); |
---|
[775] | 1235 | %%%%%% |
---|
| 1236 | %TODO: read time in netcdf file, see ActionName_Callback |
---|
| 1237 | %%%%%%% |
---|
[714] | 1238 | %Pairs=get(handles.PairString,'Data'); |
---|
[446] | 1239 | for iview=1:size(TimeTable,1) |
---|
| 1240 | if size(SeriesData.Time,1)<iview |
---|
| 1241 | break |
---|
| 1242 | end |
---|
| 1243 | TimeTable{iview,3}=[]; |
---|
[775] | 1244 | TimeTable{iview,4}=[]; |
---|
[714] | 1245 | if size(SeriesData.Time{iview},1)>=i2_2+1 && (isempty(ref_j_1)||size(SeriesData.Time{iview},2)>=j2_2+1) |
---|
| 1246 | if isempty(ref_j_1) |
---|
| 1247 | time_first=(SeriesData.Time{iview}(i1_1+1,2)+SeriesData.Time{iview}(i2_1+1,2))/2; |
---|
| 1248 | time_last=(SeriesData.Time{iview}(i1_2+1,2)+SeriesData.Time{iview}(i2_2+1,2))/2; |
---|
[446] | 1249 | else |
---|
[714] | 1250 | time_first=(SeriesData.Time{iview}(i1_1+1,j1_1+1)+SeriesData.Time{iview}(i2_1+1,j2_1+1))/2; |
---|
| 1251 | time_last=(SeriesData.Time{iview}(i1_2+1,j1_2+1)+SeriesData.Time{iview}(i2_2+1,j2_1+1))/2; |
---|
[446] | 1252 | end |
---|
[775] | 1253 | TimeTable{iview,3}=time_first; %TODO: take into account pairs |
---|
| 1254 | TimeTable{iview,4}=time_last; %TODO: take into account pairs |
---|
[446] | 1255 | end |
---|
| 1256 | end |
---|
| 1257 | set(handles.TimeTable,'Data',TimeTable) |
---|
| 1258 | |
---|
[477] | 1259 | %% set the waitbar position with respect to the min and max in the series |
---|
[644] | 1260 | MinIndex_i=min(get(handles.MinIndex_i,'Data')); |
---|
| 1261 | MaxIndex_i=max(get(handles.MaxIndex_i,'Data')); |
---|
[714] | 1262 | pos_first=(ref_i_1-MinIndex_i)/(MaxIndex_i-MinIndex_i+1); |
---|
| 1263 | pos_last=(ref_i_2-MinIndex_i+1)/(MaxIndex_i-MinIndex_i+1); |
---|
[757] | 1264 | if isempty(pos_first), pos_first=0; end |
---|
| 1265 | if isempty(pos_last), pos_last=1; end |
---|
[533] | 1266 | Position=get(handles.Waitbar,'Position');% position of the waitbar:= [ x,y, width, height] |
---|
[477] | 1267 | Position_status=get(handles.FileStatus,'Position'); |
---|
[644] | 1268 | Position(1)=Position_status(1)+Position_status(3)*pos_first; |
---|
[757] | 1269 | Position(3)=max(Position_status(3)*(pos_last-pos_first),0.001);% width must remain positive |
---|
[477] | 1270 | set(handles.Waitbar,'Position',Position) |
---|
| 1271 | update_waitbar(handles.Waitbar,0) |
---|
| 1272 | |
---|
[446] | 1273 | %------------------------------------------------------------------------ |
---|
[408] | 1274 | % --- Executes when selected cell(s) is changed in PairString. |
---|
| 1275 | function PairString_CellSelectionCallback(hObject, eventdata, handles) |
---|
| 1276 | %------------------------------------------------------------------------ |
---|
[669] | 1277 | if numel(eventdata.Indices)>=1 |
---|
[772] | 1278 | PairString=get(hObject,'Data'); |
---|
| 1279 | if ~isempty(PairString{eventdata.Indices(1)}) |
---|
| 1280 | SetPairs_Callback(hObject, eventdata.Indices(1), handles) |
---|
[408] | 1281 | end |
---|
| 1282 | end |
---|
[764] | 1283 | |
---|
[408] | 1284 | %------------------------------------- |
---|
| 1285 | function enable_i(handles,state) |
---|
| 1286 | set(handles.i_txt,'Visible',state) |
---|
| 1287 | set(handles.num_first_i,'Visible',state) |
---|
| 1288 | set(handles.num_last_i,'Visible',state) |
---|
| 1289 | set(handles.num_incr_i,'Visible',state) |
---|
[2] | 1290 | |
---|
[408] | 1291 | %----------------------------------- |
---|
| 1292 | function enable_j(handles,state) |
---|
| 1293 | set(handles.j_txt,'Visible',state) |
---|
| 1294 | set(handles.num_first_j,'Visible',state) |
---|
| 1295 | set(handles.num_last_j,'Visible',state) |
---|
| 1296 | set(handles.num_incr_j,'Visible',state) |
---|
[620] | 1297 | set(handles.MinIndex_j,'Visible',state) |
---|
| 1298 | set(handles.MaxIndex_j,'Visible',state) |
---|
[41] | 1299 | |
---|
[408] | 1300 | |
---|
[446] | 1301 | %%%%%%%%%%%%%%%%%%%% |
---|
| 1302 | %% MAIN ActionName FUNCTIONS |
---|
| 1303 | %%%%%%%%%%%%%%%%%%%% |
---|
[41] | 1304 | %------------------------------------------------------------------------ |
---|
[2] | 1305 | % --- Executes on button press in RUN. |
---|
[635] | 1306 | %------------------------------------------------------------------------ |
---|
[2] | 1307 | function RUN_Callback(hObject, eventdata, handles) |
---|
[595] | 1308 | |
---|
[845] | 1309 | %% settings of the button RUN |
---|
| 1310 | set(handles.RUN,'BusyAction','queue');% activation of STOP button will set BusyAction to 'cancel' |
---|
| 1311 | set(handles.RUN, 'Enable','Off')% avoid further RUN action until the current one is finished |
---|
| 1312 | set(handles.RUN,'BackgroundColor',[1 1 0])%show activation of RUN by yellow color |
---|
| 1313 | drawnow |
---|
| 1314 | set(handles.status,'Value',0)% desable status display if relevant |
---|
| 1315 | status_Callback([], eventdata, handles) |
---|
| 1316 | |
---|
| 1317 | %% launch action |
---|
| 1318 | errormsg=launch_action(handles); |
---|
| 1319 | if ~isempty(errormsg) |
---|
| 1320 | msgbox_uvmat('ERROR',errormsg) |
---|
| 1321 | end |
---|
| 1322 | |
---|
| 1323 | %% reset the GUI series |
---|
| 1324 | update_waitbar(handles.Waitbar,1); % put the waitbar to end position to indicate launching is finished |
---|
| 1325 | set(handles.RUN, 'Enable','On') |
---|
| 1326 | set(handles.RUN,'BackgroundColor',[1 0 0]) |
---|
| 1327 | set(handles.RUN, 'Value',0) |
---|
| 1328 | |
---|
| 1329 | %------------------------------------------------------------------------ |
---|
| 1330 | % --- called by RUN_Callback |
---|
| 1331 | %------------------------------------------------------------------------ |
---|
| 1332 | function errormsg=launch_action(handles) |
---|
| 1333 | errormsg='';%default |
---|
| 1334 | |
---|
[769] | 1335 | %% read the data on the GUI series |
---|
| 1336 | Param=read_GUI_series(handles);%displayed parameters |
---|
| 1337 | SeriesData=get(handles.series,'UserData');%hidden parameters |
---|
[770] | 1338 | if ~isfield(SeriesData,'i1_series') |
---|
[845] | 1339 | errormsg='The input field series needs to be refreshed: press REFRESH'; |
---|
[770] | 1340 | return |
---|
| 1341 | end |
---|
[769] | 1342 | if isfield(Param,'InputFields')&& isequal(Param.InputFields.FieldName,'get_field...') |
---|
[845] | 1343 | errormsg='input field name(s) not defined, select get_field...'; |
---|
[769] | 1344 | return |
---|
| 1345 | end |
---|
| 1346 | |
---|
[635] | 1347 | %% select the Action mode, 'local', 'background' or 'cluster' (if available) |
---|
| 1348 | RunMode='local';%default (needed for first opening of the GUI series) |
---|
| 1349 | if isfield(Param.Action,'RunMode') |
---|
| 1350 | RunMode=Param.Action.RunMode; |
---|
[769] | 1351 | Param.Action=rmfield(Param.Action,'RunMode');%remove from the recorded xml file to avoid interference during ImportConfig |
---|
[601] | 1352 | end |
---|
[595] | 1353 | ActionExt='.m';%default |
---|
[635] | 1354 | if isfield(Param.Action,'ActionExt') |
---|
| 1355 | ActionExt=Param.Action.ActionExt;% '.m' or '.sh' (compiled) |
---|
[769] | 1356 | Param.Action=rmfield(Param.Action,'ActionExt');%remove from the recorded xml file to avoid interference during ImportConfig |
---|
[595] | 1357 | end |
---|
[635] | 1358 | ActionName=Param.Action.ActionName; |
---|
| 1359 | ActionPath=Param.Action.ActionPath; |
---|
[594] | 1360 | path_series=fileparts(which('series')); |
---|
[472] | 1361 | |
---|
[595] | 1362 | %% create the Action fct handle if RunMode option = 'local' |
---|
[594] | 1363 | if strcmp(RunMode,'local') |
---|
| 1364 | if ~isequal(ActionPath,path_series) |
---|
| 1365 | eval(['spath=which(''' ActionName ''');']) %spath = current path of the selected function ACTION |
---|
| 1366 | if ~exist(ActionPath,'dir') |
---|
[845] | 1367 | errormsg=['The prescribed function path ' ActionPath ' does not exist']; |
---|
[594] | 1368 | return |
---|
| 1369 | end |
---|
| 1370 | if ~isequal(spath,ActionPath) |
---|
| 1371 | addpath(ActionPath)% add the prescribed path if not the current one |
---|
| 1372 | end |
---|
| 1373 | end |
---|
| 1374 | eval(['h_fun=@' ActionName ';'])%create a function handle for ACTION |
---|
| 1375 | if ~isequal(ActionPath,path_series) |
---|
| 1376 | rmpath(ActionPath)% add the prescribed path if not the current one |
---|
| 1377 | end |
---|
| 1378 | end |
---|
| 1379 | |
---|
| 1380 | %% Get RunTime code from the file PARAM.xml (needed to run compiled functions) |
---|
| 1381 | errormsg='';%default error message |
---|
| 1382 | xmlfile=fullfile(path_series,'PARAM.xml'); |
---|
| 1383 | test_batch=0;%default: ,no batch mode available |
---|
| 1384 | if ~exist(xmlfile,'file') |
---|
| 1385 | [success,message]=copyfile(fullfile(path_series,'PARAM.xml.default'),xmlfile); |
---|
| 1386 | end |
---|
| 1387 | RunTime=''; |
---|
| 1388 | if strcmp(ActionExt,'.sh') |
---|
| 1389 | if exist(xmlfile,'file') |
---|
| 1390 | s=xml2struct(xmlfile); |
---|
[598] | 1391 | if strcmp(RunMode,'cluster_oar') && isfield(s,'BatchParam') |
---|
[594] | 1392 | if isfield(s.BatchParam,'RunTime') |
---|
| 1393 | RunTime=s.BatchParam.RunTime; |
---|
| 1394 | end |
---|
| 1395 | if isfield(s.BatchParam,'NbCore') |
---|
| 1396 | NbCore=s.BatchParam.NbCore; |
---|
| 1397 | end |
---|
| 1398 | elseif (strcmp(RunMode,'background')||strcmp(RunMode,'local')) && isfield(s,'RunParam') |
---|
| 1399 | if isfield(s.RunParam,'RunTime') |
---|
| 1400 | RunTime=s.RunParam.RunTime; |
---|
| 1401 | end |
---|
| 1402 | if isfield(s.RunParam,'NbCore') |
---|
| 1403 | NbCore=s.RunParam.NbCore; |
---|
| 1404 | end |
---|
| 1405 | end |
---|
| 1406 | end |
---|
[598] | 1407 | if isempty(RunTime) && strcmp(RunMode,'cluster_oar') |
---|
[845] | 1408 | errormsg='RunTime name not found in PARAM.xml, compiled version .sh cannot run on cluster'; |
---|
[594] | 1409 | return |
---|
| 1410 | end |
---|
| 1411 | end |
---|
[595] | 1412 | |
---|
[764] | 1413 | %% If a compiled version has been selected (ext .sh) check weather it needs to be recompiled |
---|
| 1414 | if strcmp(ActionExt,'.sh') |
---|
| 1415 | TransformPath=''; |
---|
| 1416 | if ~isempty(get(handles.ActionExt,'UserData')) |
---|
| 1417 | TransformPath=get(handles.ActionExt,'UserData'); |
---|
| 1418 | end |
---|
| 1419 | set(handles.series,'Pointer','watch') % set the mouse pointer to 'watch' |
---|
| 1420 | set(handles.ActionExt,'BackgroundColor',[1 1 0]) |
---|
| 1421 | ActionFullName=fullfile(get(handles.ActionPath,'String'),[ActionName '.sh']); |
---|
| 1422 | if ~exist(ActionFullName,'file') |
---|
| 1423 | answer=msgbox_uvmat('INPUT_Y-N','compiled version has not been created: compile now?'); |
---|
| 1424 | if strcmp(answer,'Yes') |
---|
| 1425 | set(handles.ActionExt,'BackgroundColor',[1 1 0]) |
---|
| 1426 | path_uvmat=fileparts(which('series')); |
---|
| 1427 | currentdir=pwd; |
---|
| 1428 | cd(get(handles.ActionPath,'String'))% go to the directory of Action |
---|
| 1429 | addpath(path_uvmat)% add the path to uvmat to run the fct 'compile' |
---|
| 1430 | compile(ActionName,TransformPath) |
---|
| 1431 | cd(currentdir) |
---|
| 1432 | end |
---|
| 1433 | else |
---|
| 1434 | sh_file_info=dir(fullfile(get(handles.ActionPath,'String'),[ActionName '.sh'])); |
---|
| 1435 | m_file_info=dir(fullfile(get(handles.ActionPath,'String'),[ActionName '.m'])); |
---|
| 1436 | if isfield(m_file_info,'datenum') && m_file_info.datenum>sh_file_info.datenum |
---|
| 1437 | set(handles.ActionExt,'BackgroundColor',[1 1 0]) |
---|
| 1438 | drawnow |
---|
| 1439 | answer=msgbox_uvmat('INPUT_Y-N',[ActionName '.sh needs to be updated: recompile now?']); |
---|
| 1440 | if strcmp(answer,'Yes') |
---|
| 1441 | path_uvmat=fileparts(which('series')); |
---|
| 1442 | currentdir=pwd; |
---|
| 1443 | cd(get(handles.ActionPath,'String'))% go to the directory of Action |
---|
| 1444 | addpath(path_uvmat)% add the path to uvmat to run the fct 'compile' |
---|
| 1445 | addpath(fullfile(path_uvmat,'transform_field'))% add the path to uvmat to run the fct 'compile' |
---|
| 1446 | compile(ActionName,TransformPath) |
---|
| 1447 | cd(currentdir) |
---|
| 1448 | end |
---|
| 1449 | end |
---|
| 1450 | end |
---|
| 1451 | set(handles.ActionExt,'BackgroundColor',[1 1 1]) |
---|
| 1452 | set(handles.series,'Pointer','arrow') % set the mouse pointer to 'watch |
---|
| 1453 | end |
---|
| 1454 | |
---|
[595] | 1455 | %% set nbre of cluster cores and processes |
---|
| 1456 | switch RunMode |
---|
| 1457 | case {'local','background'} |
---|
| 1458 | NbCore=1;% no need to split the calculation |
---|
| 1459 | case 'cluster_oar' |
---|
[770] | 1460 | if strcmp(ActionExt,'.m')% case of Matlab function (uncompiled) |
---|
[595] | 1461 | NbCore=1;% one core used only (limitation of Matlab licences) |
---|
[855] | 1462 | msgbox_uvmat('WARNING','Number of cores =1: select the compiled version .sh for multi-core processing'); |
---|
[595] | 1463 | extra_oar=''; |
---|
| 1464 | else |
---|
[591] | 1465 | answer=inputdlg({'Number of cores (max 36)','extra oar options'},'oarsub parameter',1,{'12',''}); |
---|
| 1466 | NbCore=str2double(answer{1}); |
---|
[595] | 1467 | extra_oar=answer{2}; |
---|
| 1468 | end |
---|
| 1469 | end |
---|
[635] | 1470 | if ~isfield(Param.IndexRange,'NbSlice') |
---|
| 1471 | Param.IndexRange.NbSlice=[]; |
---|
[595] | 1472 | end |
---|
[635] | 1473 | if isempty(Param.IndexRange.NbSlice) |
---|
[591] | 1474 | NbProcess=NbCore;% choose one process per core |
---|
[594] | 1475 | else |
---|
[635] | 1476 | NbProcess=Param.IndexRange.NbSlice;% the nbre of run processes is equal to the number of slices |
---|
[595] | 1477 | NbCore=min(NbCore,NbProcess);% at least one process per core |
---|
[591] | 1478 | end |
---|
[764] | 1479 | |
---|
| 1480 | %% create the output data directory if needed |
---|
[845] | 1481 | OutputDir=''; |
---|
[764] | 1482 | if isfield(Param,'OutputSubDir') |
---|
| 1483 | SubDirOut=[get(handles.OutputSubDir,'String') Param.OutputDirExt]; |
---|
| 1484 | SubDirOutNew=SubDirOut; |
---|
| 1485 | detect=exist(fullfile(Param.InputTable{1,1},SubDirOutNew),'dir');% test if the dir already exist |
---|
| 1486 | check_create=1; %need to create the result directory by default |
---|
| 1487 | while detect |
---|
[851] | 1488 | answer=msgbox_uvmat('INPUT_Y-N-Cancel',['use existing ouput directory: ' fullfile(Param.InputTable{1,1},SubDirOutNew) ', possibly delete previous data']); |
---|
[764] | 1489 | if strcmp(answer,'Cancel') |
---|
[845] | 1490 | set(handles.RUN,'backgroundcolor',[1 0 0]) |
---|
[764] | 1491 | return |
---|
| 1492 | elseif strcmp(answer,'Yes') |
---|
| 1493 | detect=0; |
---|
| 1494 | check_create=0; |
---|
| 1495 | else |
---|
| 1496 | r=regexp(SubDirOutNew,'(?<root>.*\D)(?<num1>\d+)$','names');%detect whether name ends by a number |
---|
| 1497 | if isempty(r) |
---|
| 1498 | r(1).root=[SubDirOutNew '_']; |
---|
| 1499 | r(1).num1='0'; |
---|
| 1500 | end |
---|
| 1501 | SubDirOutNew=[r(1).root num2str(str2num(r(1).num1)+1)];%increment the index by 1 or put 1 |
---|
| 1502 | detect=exist(fullfile(Param.InputTable{1,1},SubDirOutNew),'dir');% test if the dir already exists |
---|
| 1503 | check_create=1; |
---|
| 1504 | end |
---|
| 1505 | end |
---|
| 1506 | Param.OutputDirExt=regexprep(SubDirOutNew,Param.OutputSubDir,''); |
---|
| 1507 | Param.OutputRootFile=Param.InputTable{1,3};% the first sorted RootFile taken for output |
---|
| 1508 | set(handles.OutputDirExt,'String',Param.OutputDirExt) |
---|
| 1509 | OutputDir=fullfile(Param.InputTable{1,1},[Param.OutputSubDir Param.OutputDirExt]);% full name (with path) of output directory |
---|
| 1510 | if check_create % create output directory if it does not exist |
---|
| 1511 | [tild,msg1]=mkdir(OutputDir); |
---|
| 1512 | if ~strcmp(msg1,'') |
---|
[845] | 1513 | errormsg=['cannot create ' OutputDir ': ' msg1];%error message for directory creation |
---|
[764] | 1514 | return |
---|
| 1515 | end |
---|
| 1516 | [success,msg] = fileattrib(OutputDir,'+w','g','s');% allow writing access for the group of users, recursively in the folder |
---|
| 1517 | if success==0 |
---|
| 1518 | msgbox_uvmat('WARNING',{['unable to set group write access to ' OutputDir ':']; msg1});%error message for directory creation |
---|
| 1519 | end |
---|
| 1520 | end |
---|
[825] | 1521 | |
---|
| 1522 | elseif isfield(Param,'ActionInput')&&isfield(Param.ActionInput,'LogPath')% custom definition of the output dir |
---|
| 1523 | OutputDir=Param.ActionInput.LogPath; |
---|
| 1524 | end |
---|
| 1525 | DirXml=fullfile(OutputDir,'0_XML'); |
---|
| 1526 | if ~exist(DirXml,'dir') |
---|
| 1527 | [tild,msg1]=mkdir(DirXml); |
---|
| 1528 | if ~strcmp(msg1,'') |
---|
[845] | 1529 | errormsg=['cannot create ' DirXml ': ' msg1];%error message for directory creation |
---|
[825] | 1530 | return |
---|
[764] | 1531 | end |
---|
[825] | 1532 | [success,msg] = fileattrib(DirXml,'+w','g','s');% allow writing access for the group of users, recursively in the folder |
---|
| 1533 | if success==0 |
---|
| 1534 | msgbox_uvmat('WARNING',{['unable to set group write access to ' DirXml ':']; msg});%error message for directory creation |
---|
| 1535 | end |
---|
[764] | 1536 | end |
---|
[825] | 1537 | OutputNomType=nomtype2pair(Param.InputTable{1,4});% nomenclature for output files |
---|
| 1538 | |
---|
[635] | 1539 | %% get the set of reference field indices |
---|
| 1540 | first_i=1; |
---|
| 1541 | last_i=1; |
---|
| 1542 | incr_i=1; |
---|
| 1543 | first_j=1; |
---|
| 1544 | last_j=1; |
---|
| 1545 | incr_j=1; |
---|
| 1546 | if isfield(Param.IndexRange,'first_i') |
---|
| 1547 | first_i=Param.IndexRange.first_i; |
---|
| 1548 | incr_i=Param.IndexRange.incr_i; |
---|
| 1549 | last_i=Param.IndexRange.last_i; |
---|
| 1550 | end |
---|
| 1551 | if isfield(Param.IndexRange,'first_j') |
---|
| 1552 | first_j=Param.IndexRange.first_j; |
---|
| 1553 | last_j=Param.IndexRange.last_j; |
---|
| 1554 | incr_j=Param.IndexRange.incr_j; |
---|
| 1555 | end |
---|
| 1556 | if last_i < first_i || last_j < first_j |
---|
[845] | 1557 | errormsg= 'series/Run_Callback:last field index must be larger or equal to the first one'; |
---|
[609] | 1558 | return |
---|
[635] | 1559 | end |
---|
| 1560 | %incr_i must be defined, =1 by default, if NbSlice is active |
---|
| 1561 | if isempty(incr_i)&& ~isempty(Param.IndexRange.NbSlice) |
---|
| 1562 | incr_i=1; |
---|
| 1563 | set(handles.num_incr_i,'String','1') |
---|
| 1564 | end |
---|
| 1565 | if isempty(incr_i) |
---|
| 1566 | if isempty(incr_j) |
---|
| 1567 | [ref_j,ref_i]=find(squeeze(SeriesData.i1_series{1}(1,:,:))); |
---|
| 1568 | ref_j=ref_j(ref_j>=first_j & ref_j<=last_j); |
---|
| 1569 | ref_i=ref_i(ref_i>=first_i & ref_i<=last_i); |
---|
| 1570 | ref_j=ref_j-1; |
---|
| 1571 | ref_i=ref_i-1; |
---|
| 1572 | else |
---|
| 1573 | ref_j=first_j:incr_j:last_j; |
---|
| 1574 | [tild,ref_i]=find(squeeze(SeriesData.i1_series{1}(1,:,:))); |
---|
| 1575 | ref_i=ref_i-1; |
---|
| 1576 | ref_i=ref_i(ref_i>=first_i & ref_i<=last_i); |
---|
| 1577 | end |
---|
[594] | 1578 | else |
---|
[635] | 1579 | ref_i=first_i:incr_i:last_i; |
---|
| 1580 | if isempty(incr_j) |
---|
[770] | 1581 | [ref_j,tild]=find(squeeze(SeriesData.i1_series{1}(1,:,:))); |
---|
| 1582 | ref_j=ref_j-1; |
---|
| 1583 | ref_j=ref_j(ref_j>=first_j & ref_j<=last_j); |
---|
[635] | 1584 | else |
---|
| 1585 | ref_j=first_j:incr_j:last_j; |
---|
| 1586 | end |
---|
[594] | 1587 | end |
---|
[635] | 1588 | BlockLength=ceil(numel(ref_i)/NbProcess); |
---|
| 1589 | nbfield_j=numel(ref_j); |
---|
[594] | 1590 | |
---|
[604] | 1591 | %% record nbre of output files and starting time for computation for status |
---|
[602] | 1592 | StatusData=get(handles.status,'UserData'); |
---|
[605] | 1593 | if isfield(StatusData,'OutputFileMode') |
---|
[604] | 1594 | switch StatusData.OutputFileMode |
---|
| 1595 | case 'NbInput' |
---|
[635] | 1596 | StatusData.NbOutputFile=numel(ref_i)*nbfield_j; |
---|
[604] | 1597 | case 'NbInput_i' |
---|
[635] | 1598 | StatusData.NbOutputFile=numel(ref_i); |
---|
[604] | 1599 | case 'NbSlice' |
---|
| 1600 | StatusData.NbOutputFile=str2num(get(handles.num_NbSlice,'String')); |
---|
| 1601 | end |
---|
[605] | 1602 | end |
---|
[604] | 1603 | StatusData.TimeStart=now; |
---|
| 1604 | set(handles.status,'UserData',StatusData) |
---|
[602] | 1605 | |
---|
[595] | 1606 | %% direct processing on the current Matlab session |
---|
| 1607 | if strcmp (RunMode,'local') |
---|
| 1608 | for iprocess=1:NbProcess |
---|
[635] | 1609 | if isempty(Param.IndexRange.NbSlice) |
---|
| 1610 | %Param.IndexRange.first_i=first_i+(iprocess-1)*BlockLength*incr_i; |
---|
| 1611 | Param.IndexRange.first_i=ref_i(1+(iprocess-1)*BlockLength); |
---|
| 1612 | if Param.IndexRange.first_i>last_i |
---|
[598] | 1613 | break |
---|
| 1614 | end |
---|
[635] | 1615 | Param.IndexRange.last_i=min(ref_i(iprocess*BlockLength),last_i); |
---|
| 1616 | %Param.IndexRange.last_i=min(first_i+(iprocess)*BlockLength*incr_i-1,last_i); |
---|
| 1617 | else %multislices (then incr_i is not empty) |
---|
| 1618 | Param.IndexRange.first_i= first_i+incr_i*(iprocess-1); |
---|
| 1619 | Param.IndexRange.incr_i=incr_i*Param.IndexRange.NbSlice; |
---|
[595] | 1620 | end |
---|
[635] | 1621 | if isfield(Param,'OutputSubDir') |
---|
| 1622 | t=struct2xml(Param); |
---|
[595] | 1623 | t=set(t,1,'name','Series'); |
---|
[635] | 1624 | filexml=fullfile_uvmat(DirXml,'',Param.InputTable{1,3},'.xml',OutputNomType,... |
---|
| 1625 | Param.IndexRange.first_i,Param.IndexRange.last_i,first_j,last_j); |
---|
[595] | 1626 | save(t,filexml); |
---|
[635] | 1627 | end |
---|
[595] | 1628 | switch ActionExt |
---|
| 1629 | case '.m' |
---|
[635] | 1630 | h_fun(Param); |
---|
[595] | 1631 | case '.sh' |
---|
| 1632 | switch computer |
---|
| 1633 | case {'PCWIN','PCWIN64'} %Windows system |
---|
| 1634 | filexml=regexprep(filexml,'\\','\\\\');% add '\' so that '\' are left as characters |
---|
[598] | 1635 | system([fullfile(ActionPath,[ActionName '.sh']) ' ' RunTime ' ' filexml]);% TODO: adapt to DOS system |
---|
[595] | 1636 | case {'GLNX86','GLNXA64','MACI64'}%Linux system |
---|
[598] | 1637 | system([fullfile(ActionPath,[ActionName '.sh']) ' ' RunTime ' ' filexml]); |
---|
[591] | 1638 | end |
---|
[472] | 1639 | end |
---|
[595] | 1640 | end |
---|
| 1641 | else |
---|
| 1642 | %% processing on a different session of the same computer (background) or cluster, create executable files |
---|
| 1643 | batch_file_list=cell(NbProcess,1);% initiate the list of executable files |
---|
[635] | 1644 | DirBat=fullfile(OutputDir,'0_EXE'); |
---|
| 1645 | switch computer |
---|
| 1646 | case {'PCWIN','PCWIN64'} %Windows system |
---|
| 1647 | ExeExt='.bat'; |
---|
| 1648 | case {'GLNX86','GLNXA64','MACI64'}%Linux system |
---|
| 1649 | ExeExt='.sh'; |
---|
| 1650 | end |
---|
[595] | 1651 | %create subdirectory for executable files |
---|
| 1652 | if ~exist(DirBat,'dir') |
---|
| 1653 | [tild,msg1]=mkdir(DirBat); |
---|
| 1654 | if ~strcmp(msg1,'') |
---|
[845] | 1655 | errormsg=['cannot create ' DirBat ': ' msg1];%error message for directory creation |
---|
[595] | 1656 | return |
---|
[472] | 1657 | end |
---|
[595] | 1658 | end |
---|
| 1659 | %create subdirectory for log files |
---|
| 1660 | DirLog=fullfile(OutputDir,'0_LOG'); |
---|
| 1661 | if ~exist(DirLog,'dir') |
---|
| 1662 | [tild,msg1]=mkdir(DirLog); |
---|
| 1663 | if ~strcmp(msg1,'') |
---|
[845] | 1664 | errormsg=['cannot create ' DirLog ': ' msg1];%error message for directory creation |
---|
[595] | 1665 | return |
---|
| 1666 | end |
---|
| 1667 | end |
---|
| 1668 | for iprocess=1:NbProcess |
---|
[635] | 1669 | if isempty(Param.IndexRange.NbSlice)% process by blocks of i index |
---|
| 1670 | Param.IndexRange.first_i=first_i+(iprocess-1)*BlockLength*incr_i; |
---|
| 1671 | if Param.IndexRange.first_i>last_i |
---|
[598] | 1672 | NbProcess=iprocess-1; |
---|
| 1673 | break% leave the loop, we are at the end of the calculation |
---|
| 1674 | end |
---|
[635] | 1675 | Param.IndexRange.last_i=min(last_i,first_i+(iprocess)*BlockLength*incr_i-1); |
---|
[595] | 1676 | else% process by slices of i index if NbSlice is defined, computation in a single process if NbSlice =1 |
---|
[635] | 1677 | Param.IndexRange.first_i= first_i+iprocess-1; |
---|
| 1678 | Param.IndexRange.incr_i=incr_i*Param.IndexRange.NbSlice; |
---|
[595] | 1679 | end |
---|
[840] | 1680 | for ilist=1:size(Param.InputTable,1) |
---|
| 1681 | Param.InputTable{ilist,1}=regexprep(Param.InputTable{ilist,1},'\','/');%correct path name for PCWIN system |
---|
| 1682 | end |
---|
[595] | 1683 | % create, fill and save the xml parameter file |
---|
[635] | 1684 | t=struct2xml(Param); |
---|
[595] | 1685 | t=set(t,1,'name','Series'); |
---|
[635] | 1686 | filexml=fullfile_uvmat(DirXml,'',Param.InputTable{1,3},'.xml',OutputNomType,... |
---|
| 1687 | Param.IndexRange.first_i,Param.IndexRange.last_i,first_j,last_j); |
---|
[595] | 1688 | save(t,filexml);% save the parameter file |
---|
| 1689 | |
---|
| 1690 | %create the executable file |
---|
[635] | 1691 | filebat=fullfile_uvmat(DirBat,'',Param.InputTable{1,3},ExeExt,OutputNomType,... |
---|
| 1692 | Param.IndexRange.first_i,Param.IndexRange.last_i,first_j,last_j); |
---|
[595] | 1693 | batch_file_list{iprocess}=filebat; |
---|
| 1694 | [fid,message]=fopen(filebat,'w');% create the executable file |
---|
| 1695 | if isequal(fid,-1) |
---|
[845] | 1696 | errormsg=['creation of .bat file: ' message]; |
---|
[595] | 1697 | return |
---|
| 1698 | end |
---|
| 1699 | |
---|
| 1700 | % set the log file name |
---|
[635] | 1701 | filelog=fullfile_uvmat(DirLog,'',Param.InputTable{1,3},'.log',OutputNomType,... |
---|
| 1702 | Param.IndexRange.first_i,Param.IndexRange.last_i,first_j,last_j); |
---|
[595] | 1703 | |
---|
| 1704 | % fill and save the executable file |
---|
| 1705 | switch ActionExt |
---|
| 1706 | case '.m'% Matlab function |
---|
| 1707 | switch computer |
---|
| 1708 | case {'GLNX86','GLNXA64','MACI64'} |
---|
| 1709 | cmd=[... |
---|
| 1710 | '#!/bin/bash \n'... |
---|
| 1711 | '. /etc/sysprofile \n'... |
---|
| 1712 | 'matlab -nodisplay -nosplash -nojvm -logfile ''' filelog ''' <<END_MATLAB \n'... |
---|
| 1713 | 'addpath(''' path_series '''); \n'... |
---|
[635] | 1714 | 'addpath(''' Param.Action.ActionPath '''); \n'... |
---|
| 1715 | '' Param.Action.ActionName '( ''' filexml '''); \n'... |
---|
[595] | 1716 | 'exit \n'... |
---|
| 1717 | 'END_MATLAB \n']; |
---|
| 1718 | fprintf(fid,cmd);%fill the executable file with the char string cmd |
---|
| 1719 | fclose(fid);% close the executable file |
---|
| 1720 | system(['chmod +x ' filebat]);% set the file to executable |
---|
| 1721 | case {'PCWIN','PCWIN64'} |
---|
| 1722 | text_matlabscript=['matlab -automation -logfile ' regexprep(filelog,'\\','\\\\')... |
---|
| 1723 | ' -r "addpath(''' regexprep(path_series,'\\','\\\\') ''');'... |
---|
[635] | 1724 | 'addpath(''' regexprep(Param.Action.ActionPath,'\\','\\\\') ''');'... |
---|
| 1725 | '' Param.Action.ActionName '( ''' regexprep(filexml,'\\','\\\\') ''');exit"']; |
---|
[595] | 1726 | fprintf(fid,text_matlabscript);%fill the executable file with the char string cmd |
---|
| 1727 | fclose(fid);% close the executable file |
---|
[591] | 1728 | end |
---|
[595] | 1729 | case '.sh' % compiled Matlab function |
---|
| 1730 | switch computer |
---|
| 1731 | case {'GLNX86','GLNXA64','MACI64'} |
---|
| 1732 | cmd=['#!/bin/bash \n '... |
---|
| 1733 | '#$ -cwd \n '... |
---|
| 1734 | 'hostname && date \n '... |
---|
| 1735 | 'umask 002 \n'... |
---|
[598] | 1736 | fullfile(ActionPath,[ActionName '.sh']) ' ' RunTime ' ' filexml];%allow writting access to created files for user group |
---|
[595] | 1737 | fprintf(fid,cmd);%fill the executable file with the char string cmd |
---|
| 1738 | fclose(fid);% close the executable file |
---|
| 1739 | system(['chmod +x ' filebat]);% set the file to executable |
---|
[591] | 1740 | |
---|
[770] | 1741 | case {'PCWIN','PCWIN64'} |
---|
[595] | 1742 | fprintf(fid,cmd); |
---|
[591] | 1743 | fclose(fid); |
---|
| 1744 | end |
---|
| 1745 | end |
---|
[595] | 1746 | end |
---|
[472] | 1747 | end |
---|
| 1748 | |
---|
[595] | 1749 | %% launch the executable files for background or cluster processing |
---|
| 1750 | switch RunMode |
---|
| 1751 | case 'background' |
---|
| 1752 | for iprocess=1:NbProcess |
---|
[604] | 1753 | system([batch_file_list{iprocess} ' &'])% directly execute the command file for each process |
---|
[845] | 1754 | msgbox_uvmat('CONFIRMATION',[ActionName ' launched in background: press STATUS to see results']) |
---|
[595] | 1755 | end |
---|
| 1756 | case 'cluster_oar' % option 'oar-parexec' used |
---|
| 1757 | %create subdirectory for oar command and log files |
---|
| 1758 | DirOAR=fullfile(OutputDir,'0_OAR'); |
---|
[650] | 1759 | if exist(DirOAR,'dir')% delete the content of the dir 0_OAR to allow new input |
---|
| 1760 | curdir=pwd; |
---|
| 1761 | cd(DirOAR) |
---|
| 1762 | delete('*') |
---|
| 1763 | cd(curdir) |
---|
| 1764 | else |
---|
[595] | 1765 | [tild,msg1]=mkdir(DirOAR); |
---|
| 1766 | if ~strcmp(msg1,'') |
---|
[845] | 1767 | errormsg=['cannot create ' DirOAR ': ' msg1];%error message for directory creation |
---|
[595] | 1768 | return |
---|
| 1769 | end |
---|
| 1770 | end |
---|
[777] | 1771 | max_walltime=3600*20; % 20h max total calculation (cannot exceed 24 h) |
---|
[602] | 1772 | walltime_onejob=600;%seconds, max estimated time for asingle file index value |
---|
[595] | 1773 | filename_joblist=fullfile(DirOAR,'job_list.txt');%create name of the global executable file |
---|
| 1774 | fid=fopen(filename_joblist,'w'); |
---|
| 1775 | for p=1:length(batch_file_list) |
---|
[598] | 1776 | fprintf(fid,[batch_file_list{p} '\n']);% list of exe files |
---|
[595] | 1777 | end |
---|
| 1778 | fclose(fid); |
---|
| 1779 | system(['chmod +x ' filename_joblist]);% set the file to executable |
---|
| 1780 | oar_command=['oarsub -n CIVX '... |
---|
| 1781 | '-t idempotent --checkpoint ' num2str(walltime_onejob+60) ' '... |
---|
| 1782 | '-l /core=' num2str(NbCore) ','... |
---|
[602] | 1783 | 'walltime=' datestr(min(1.05*walltime_onejob/86400*max(NbProcess*BlockLength*nbfield_j,NbCore)/NbCore,max_walltime/86400),13) ' '... |
---|
[595] | 1784 | '-E ' regexprep(filename_joblist,'\.txt\>','.stderr') ' '... |
---|
| 1785 | '-O ' regexprep(filename_joblist,'\.txt\>','.stdout') ' '... |
---|
| 1786 | extra_oar ' '... |
---|
| 1787 | '"oar-parexec -s -f ' filename_joblist ' '... |
---|
| 1788 | '-l ' filename_joblist '.log"\n']; |
---|
| 1789 | filename_oarcommand=fullfile(DirOAR,'oar_command'); |
---|
| 1790 | fid=fopen(filename_oarcommand,'w'); |
---|
| 1791 | fprintf(fid,oar_command); |
---|
| 1792 | fclose(fid); |
---|
| 1793 | fprintf(oar_command);% display in command line |
---|
[735] | 1794 | system(oar_command); |
---|
| 1795 | msgbox_uvmat('CONFIRMATION',[ActionName ' launched in cluster: press STATUS to see results']) |
---|
[595] | 1796 | end |
---|
| 1797 | |
---|
[446] | 1798 | %------------------------------------------------------------------------ |
---|
| 1799 | function STOP_Callback(hObject, eventdata, handles) |
---|
| 1800 | %------------------------------------------------------------------------ |
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| 1801 | set(handles.RUN, 'BusyAction','cancel') |
---|
| 1802 | set(handles.RUN,'BackgroundColor',[1 0 0]) |
---|
| 1803 | set(handles.RUN,'enable','on') |
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[591] | 1804 | set(handles.RUN, 'Value',0) |
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[446] | 1805 | |
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[591] | 1806 | |
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[446] | 1807 | %------------------------------------------------------------------------ |
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[635] | 1808 | % --- read parameters from the GUI series |
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| 1809 | %------------------------------------------------------------------------ |
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| 1810 | function Param=read_GUI_series(handles) |
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[594] | 1811 | |
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[635] | 1812 | %% read raw parameters from the GUI series |
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| 1813 | Param=read_GUI(handles.series); |
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[446] | 1814 | |
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[635] | 1815 | %% clean the output structure by removing unused information |
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| 1816 | if isfield(Param,'Pairs') |
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| 1817 | Param=rmfield(Param,'Pairs'); %info Pairs not needed for output |
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[408] | 1818 | end |
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[851] | 1819 | Param.IndexRange.TimeSource=Param.IndexRange.TimeTable{end,1}; |
---|
[635] | 1820 | Param.IndexRange=rmfield(Param.IndexRange,'TimeTable'); |
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| 1821 | empty_line=false(size(Param.InputTable,1),1); |
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| 1822 | for iline=1:size(Param.InputTable,1) |
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[643] | 1823 | empty_line(iline)=isempty(cell2mat(Param.InputTable(iline,1:3))); |
---|
[595] | 1824 | end |
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[635] | 1825 | Param.InputTable(empty_line,:)=[]; |
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[408] | 1826 | |
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[41] | 1827 | %------------------------------------------------------------------------ |
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[446] | 1828 | % --- Executes on selection change in ActionName. |
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| 1829 | function ActionName_Callback(hObject, eventdata, handles) |
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[41] | 1830 | %------------------------------------------------------------------------ |
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[705] | 1831 | |
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[591] | 1832 | %% stop any ongoing series processing |
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| 1833 | if isequal(get(handles.RUN,'Value'),1) |
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| 1834 | answer= msgbox_uvmat('INPUT_Y-N','stop current Action process?'); |
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| 1835 | if strcmp(answer,'Yes') |
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| 1836 | STOP_Callback(hObject, eventdata, handles) |
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| 1837 | else |
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| 1838 | return |
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| 1839 | end |
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| 1840 | end |
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[598] | 1841 | set(handles.ActionName,'BackgroundColor',[1 1 0]) |
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[648] | 1842 | huigetfile=findobj(allchild(0),'tag','status_display'); |
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[644] | 1843 | if ~isempty(huigetfile) |
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| 1844 | delete(huigetfile) |
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| 1845 | end |
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[598] | 1846 | drawnow |
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[591] | 1847 | |
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[851] | 1848 | %% check whether the input file(s) need to be refreshed |
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| 1849 | % SeriesData=get(handles.series,'UserData');%hidden parameters |
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| 1850 | % if ~isfield(SeriesData,'i1_series') |
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| 1851 | % msgbox_uvmat('ERROR','The input field series needs to be refreshed: press REFRESH'); |
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| 1852 | % return |
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| 1853 | % end |
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| 1854 | |
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[591] | 1855 | %% get Action name and path |
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[851] | 1856 | NbBuiltinAction=get(handles.Action,'UserData'); %nbre of functions initially proposed in the menu ActionName (as defined in the Opening fct of series) |
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[591] | 1857 | ActionList=get(handles.ActionName,'String');% list menu fields |
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| 1858 | ActionIndex=get(handles.ActionName,'Value'); |
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[620] | 1859 | if ~isequal(ActionIndex,1)% if we are not just opening series |
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[591] | 1860 | InputTable=get(handles.InputTable,'Data'); |
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| 1861 | if isempty(InputTable{1,4}) |
---|
| 1862 | msgbox_uvmat('ERROR','no input file available: use Open in the menu bar') |
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| 1863 | return |
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| 1864 | end |
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| 1865 | end |
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| 1866 | ActionName= ActionList{get(handles.ActionName,'Value')}; % selected function name |
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| 1867 | ActionPathList=get(handles.ActionName,'UserData');%list of recorded paths to functions of the list ActionName |
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| 1868 | |
---|
| 1869 | %% add a new function to the menu if 'more...' has been selected in the menu ActionName |
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| 1870 | if isequal(ActionName,'more...') |
---|
| 1871 | [FileName, PathName] = uigetfile( ... |
---|
| 1872 | {'*.m', ' (*.m)'; |
---|
[2] | 1873 | '*.m', '.m files '; ... |
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| 1874 | '*.*', 'All Files (*.*)'}, ... |
---|
[591] | 1875 | 'Pick a series processing function ',get(handles.ActionPath,'String')); |
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[2] | 1876 | if length(FileName)<2 |
---|
| 1877 | return |
---|
| 1878 | end |
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[851] | 1879 | [tild,ActionName,ActionExt]=fileparts(FileName); |
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[598] | 1880 | |
---|
| 1881 | % insert the choice in the menu ActionName |
---|
[591] | 1882 | ActionIndex=find(strcmp(ActionName,ActionList),1);% look for the selected function in the menu Action |
---|
[851] | 1883 | PathName=regexprep(PathName,'/$',''); |
---|
| 1884 | if ~isempty(ActionIndex) && ~strcmp(ActionPathList{ActionIndex},PathName)%compare the path to the existing fct |
---|
| 1885 | ActionIndex=[]; % the selected path is different than the recorded one |
---|
| 1886 | end |
---|
| 1887 | if isempty(ActionIndex)%the qselected fct (with selected path) does not exist in the menu |
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[591] | 1888 | ActionIndex= length(ActionList); |
---|
| 1889 | ActionList=[ActionList(1:end-1);{ActionName};ActionList(end)];% the selected function is appended in the menu, before the last item 'more...' |
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[851] | 1890 | ActionPathList=[ActionPathList; PathName]; |
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[591] | 1891 | end |
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[2] | 1892 | |
---|
[598] | 1893 | % record the file extension and extend the path list if it is a new extension |
---|
[591] | 1894 | ActionExtList=get(handles.ActionExt,'String'); |
---|
| 1895 | ActionExtIndex=find(strcmp(ActionExt,ActionExtList), 1); |
---|
| 1896 | if isempty(ActionExtIndex) |
---|
| 1897 | set(handles.ActionExt,'String',[ActionExtList;{ActionExt}]) |
---|
| 1898 | end |
---|
[598] | 1899 | |
---|
| 1900 | % remove old Action options in the menu (keeping a menu length <nb_builtin_ACTION+5) |
---|
[851] | 1901 | if length(ActionList)>NbBuiltinAction+5; %nb_builtin_ACTION=nbre of functions always remaining in the initial menu |
---|
| 1902 | nbremove=length(ActionList)-NbBuiltinAction-5; |
---|
| 1903 | ActionList(NbBuiltinAction+1:end-5)=[]; |
---|
| 1904 | ActionPathList(NbBuiltinAction+1:end-4,:)=[]; |
---|
[598] | 1905 | ActionIndex=ActionIndex-nbremove; |
---|
| 1906 | end |
---|
[591] | 1907 | |
---|
[598] | 1908 | % record action menu, choice and path |
---|
| 1909 | set(handles.ActionName,'Value',ActionIndex) |
---|
| 1910 | set(handles.ActionName,'String',ActionList) |
---|
[851] | 1911 | set(handles.ActionName,'UserData',ActionPathList); |
---|
[598] | 1912 | set(handles.ActionExt,'Value',ActionExtIndex) |
---|
[851] | 1913 | % ActionPathList{ActionIndex,ActionExtIndex}=PathName; |
---|
[598] | 1914 | |
---|
| 1915 | %record the user defined menu additions in personal file profil_perso |
---|
[591] | 1916 | dir_perso=prefdir; |
---|
| 1917 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
[851] | 1918 | if NbBuiltinAction+1<=numel(ActionList)-1 |
---|
| 1919 | ActionListUser=ActionList(NbBuiltinAction+1:numel(ActionList)-1); |
---|
| 1920 | ActionPathListUser=ActionPathList(NbBuiltinAction+1:numel(ActionList)-1); |
---|
[591] | 1921 | ActionExtListUser={}; |
---|
| 1922 | if numel(ActionExtList)>2 |
---|
| 1923 | ActionExtListUser=ActionExtList(3:end); |
---|
| 1924 | end |
---|
| 1925 | if exist(profil_perso,'file') |
---|
| 1926 | save(profil_perso,'ActionListUser','ActionPathListUser','ActionExtListUser','-append') |
---|
| 1927 | else |
---|
| 1928 | save(profil_perso,'ActionListUser','ActionPathListUser','ActionExtListUser','-V6') |
---|
| 1929 | end |
---|
| 1930 | end |
---|
[2] | 1931 | end |
---|
| 1932 | |
---|
[591] | 1933 | %% check the current ActionPath to the selected function |
---|
[594] | 1934 | ActionPath=ActionPathList{ActionIndex};%current recorded path |
---|
| 1935 | set(handles.ActionPath,'String',ActionPath); %show the path to the senlected function |
---|
[2] | 1936 | |
---|
[591] | 1937 | %% reinitialise the waitbar |
---|
[477] | 1938 | update_waitbar(handles.Waitbar,0) |
---|
| 1939 | |
---|
[594] | 1940 | %% create the function handle for Action |
---|
| 1941 | path_series=which('series'); |
---|
| 1942 | if ~isequal(ActionPath,path_series) |
---|
| 1943 | eval(['spath=which(''' ActionName ''');']) %spath = current path of the selected function ACTION |
---|
| 1944 | if ~exist(ActionPath,'dir') |
---|
| 1945 | errormsg=['The prescribed function path ' ActionPath ' does not exist']; |
---|
| 1946 | return |
---|
| 1947 | end |
---|
| 1948 | if ~isequal(spath,ActionPath) |
---|
| 1949 | addpath(ActionPath)% add the prescribed path if not the current one |
---|
| 1950 | end |
---|
| 1951 | end |
---|
| 1952 | eval(['h_fun=@' ActionName ';'])%create a function handle for ACTION |
---|
| 1953 | if ~isequal(ActionPath,path_series) |
---|
| 1954 | rmpath(ActionPath)% add the prescribed path if not the current one |
---|
| 1955 | end |
---|
| 1956 | |
---|
[598] | 1957 | %% Activate the Action fct |
---|
[635] | 1958 | Param=read_GUI_series(handles);% read the parameters from the GUI series |
---|
[714] | 1959 | ParamOut=h_fun(Param);%run the selected Action function to get the relevant input |
---|
[591] | 1960 | |
---|
[598] | 1961 | %% Put the first line of the selected Action fct as tooltip help |
---|
[244] | 1962 | try |
---|
[591] | 1963 | [fid,errormsg] =fopen([ActionName '.m']); |
---|
[244] | 1964 | InputText=textscan(fid,'%s',1,'delimiter','\n'); |
---|
[553] | 1965 | fclose(fid); |
---|
[456] | 1966 | set(handles.ActionName,'ToolTipString',InputText{1}{1})% put the first line of the selected function as tooltip help |
---|
[244] | 1967 | end |
---|
[2] | 1968 | |
---|
[772] | 1969 | |
---|
| 1970 | %% Visibility of VelType and VelType_1 menus asked by ActionName |
---|
| 1971 | VelTypeRequest=1;%VelType requested by default |
---|
| 1972 | VelTypeRequest_1=1;%VelType requested by default |
---|
| 1973 | if isfield(ParamOut,'VelType') |
---|
| 1974 | VelTypeRequest=ismember(ParamOut.VelType,{'on','one','two'}); |
---|
| 1975 | VelTypeRequest_1=strcmp( ParamOut.VelType,'two'); |
---|
| 1976 | end |
---|
| 1977 | FieldNameRequest=0; %hidden by default |
---|
| 1978 | FieldNameRequest_1=0; %hidden by default |
---|
| 1979 | if isfield(ParamOut,'FieldName') |
---|
| 1980 | FieldNameRequest=ismember(ParamOut.FieldName,{'on','one','two'}); |
---|
| 1981 | FieldNameRequest_1=strcmp( ParamOut.FieldName,'two'); |
---|
| 1982 | end |
---|
| 1983 | |
---|
| 1984 | %% Detect the types of input files and set menus and default options in 'VelType' |
---|
[752] | 1985 | SeriesData=get(handles.series,'UserData');% info on the input file series |
---|
[772] | 1986 | iview_civ=find(strcmp('civx',SeriesData.FileType)|strcmp('civdata',SeriesData.FileType)); |
---|
| 1987 | iview_netcdf=find(strcmp('netcdf',SeriesData.FileType)|strcmp('civx',SeriesData.FileType)|strcmp('civdata',SeriesData.FileType));% all nc files, icluding civ |
---|
| 1988 | FieldList=get(handles.FieldName,'String');% previous list as default |
---|
[775] | 1989 | if ~iscell(FieldList),FieldList={FieldList};end |
---|
[772] | 1990 | FieldList_1=get(handles.FieldName_1,'String');% previous list as default |
---|
[775] | 1991 | if ~iscell(FieldList_1),FieldList_1={FieldList_1};end |
---|
[772] | 1992 | CheckList=0;% indicate whether FieldName has been updated |
---|
| 1993 | CheckList_1=1;% indicate whether FieldName_1 has been updated |
---|
| 1994 | handles_coord=[handles.Coord_x handles.Coord_y handles.Coord_z handles.Coord_x_title handles.Coord_y_title handles.Coord_z_title]; |
---|
| 1995 | if VelTypeRequest && numel(iview_civ)>=1 |
---|
[667] | 1996 | menu=set_veltype_display(SeriesData.FileInfo{iview_civ(1)}.CivStage,SeriesData.FileType{iview_civ(1)}); |
---|
[770] | 1997 | set(handles.VelType,'Value',1)% set first choice by default |
---|
[630] | 1998 | set(handles.VelType,'String',[{'*'};menu]) |
---|
[772] | 1999 | set(handles.VelType,'Visible','on') |
---|
| 2000 | set(handles.VelType_title,'Visible','on') |
---|
| 2001 | FieldList=[set_field_list('U','V');{'C'};{'get_field...'}];%standard menu for civx data |
---|
| 2002 | CheckList=1; |
---|
| 2003 | set(handles.FieldName,'Value',1); %velocity vector choice by default |
---|
| 2004 | if VelTypeRequest_1 && numel(iview_civ)>=2 |
---|
[667] | 2005 | menu=set_veltype_display(SeriesData.FileInfo{iview_civ(2)}.CivStage,SeriesData.FileType{iview_civ(2)}); |
---|
[770] | 2006 | set(handles.VelType_1,'Value',1)% set first choice by default |
---|
[630] | 2007 | set(handles.VelType_1,'String',[{'*'};menu]) |
---|
[772] | 2008 | set(handles.VelType_1,'Visible','on') |
---|
| 2009 | set(handles.VelType_title_1,'Visible','on') |
---|
| 2010 | FieldList_1=[set_field_list('U','V');{'C'};{'get_field...'}];%standard menu for civx data |
---|
| 2011 | CheckList_1=1; |
---|
| 2012 | set(handles.FieldName_1,'Value',1); %velocity vector choice by default |
---|
| 2013 | else |
---|
| 2014 | set(handles.VelType_1,'Visible','off') |
---|
| 2015 | set(handles.VelType_title_1,'Visible','off') |
---|
[630] | 2016 | end |
---|
[772] | 2017 | else |
---|
| 2018 | set(handles.VelType,'Visible','off') |
---|
| 2019 | set(handles.VelType_title,'Visible','off') |
---|
| 2020 | end |
---|
[591] | 2021 | |
---|
[772] | 2022 | %% Detect the types of input files and set menus and default options in 'FieldName' |
---|
| 2023 | if FieldNameRequest && numel(iview_netcdf)>=1 |
---|
| 2024 | set(handles.InputFields,'Visible','on') |
---|
| 2025 | if CheckList==0 % not civ input made |
---|
[822] | 2026 | if isfield(SeriesData.FileInfo{iview_netcdf(1)},'ListVarName') |
---|
[772] | 2027 | ListVarName=SeriesData.FileInfo{iview_netcdf(1)}.ListVarName; |
---|
| 2028 | ind_var=get(handles.FieldName,'Value');%indices of previously selected variables |
---|
| 2029 | for ilist=1:numel(ind_var) |
---|
| 2030 | if isempty(find(strcmp(FieldList{ind_var(ilist)},ListVarName))) |
---|
| 2031 | FieldList={};% previous choice not consistent with new input field |
---|
| 2032 | set(handles.FieldName,'Value',1) |
---|
| 2033 | break |
---|
| 2034 | end |
---|
| 2035 | end |
---|
| 2036 | if ~isempty(FieldList) |
---|
| 2037 | if isempty(find(strcmp(get(handles.Coord_x,'String'),ListVarName)))||... |
---|
| 2038 | isempty(find(strcmp(get(handles.Coord_y,'String'),ListVarName))) |
---|
| 2039 | FieldList={}; |
---|
| 2040 | set(handles.Coord_x,'String','') |
---|
| 2041 | set(handles.Coord_y,'String','') |
---|
| 2042 | end |
---|
| 2043 | Coord_z=get(handles.Coord_z,'String'); |
---|
| 2044 | if ~isempty(Coord_z) && isempty(find(strcmp(Coord_z,ListVarName))) |
---|
| 2045 | FieldList={}; |
---|
| 2046 | set(handles.Coord_z,'String','') |
---|
| 2047 | end |
---|
| 2048 | end |
---|
| 2049 | set(handles_coord,'Visible','on') |
---|
| 2050 | FieldList=[FieldList;{'get_field...'}]; |
---|
| 2051 | if FieldNameRequest_1 && numel(iview_netcdf)>=2 |
---|
| 2052 | set(handles.FieldName_1,'Visible','on') |
---|
| 2053 | if CheckList_1==0 % not civ input made |
---|
| 2054 | ListVarName=SeriesData.FileInfo{iview_netcdf(2)}.ListVarName; |
---|
| 2055 | ind_var=get(handles.FieldName,'Value');%indices of previously selected variables |
---|
| 2056 | for ilist=1:numel(ind_var) |
---|
| 2057 | if isempty(find(strcmp(FieldList{ind_var(ilist)},ListVarName))) |
---|
| 2058 | FieldList_1={};% previous choice not consistent with new input field |
---|
| 2059 | set(handles.FieldName_1,'Value',1) |
---|
| 2060 | break |
---|
| 2061 | end |
---|
| 2062 | end |
---|
| 2063 | warn_coord=0; |
---|
| 2064 | if isempty(find(strcmp(get(handles.Coord_x,'String'),ListVarName)))||... |
---|
| 2065 | isempty(find(strcmp(get(handles.Coord_y,'String'),ListVarName))) |
---|
| 2066 | warn_coord=1; |
---|
| 2067 | end |
---|
| 2068 | if ~isempty(Coord_z) && isempty(find(strcmp(Coord_z,ListVarName))) |
---|
| 2069 | FieldList_1={}; |
---|
| 2070 | warn_coord=1; |
---|
| 2071 | end |
---|
| 2072 | if warn_coord |
---|
| 2073 | msgbox_uvmat('WARNING','coordiante names do not exist in the second netcdf input file') |
---|
| 2074 | end |
---|
| 2075 | set(handles.FieldName,'String',[FieldList;{'get_field...'}]) |
---|
| 2076 | set(handles.FieldName_1,'Visible','on') |
---|
| 2077 | set(handles.FieldName_1,'Value',1) |
---|
| 2078 | set(handles.FieldName_1,'String',FieldList_1) |
---|
| 2079 | end |
---|
| 2080 | else |
---|
| 2081 | set(handles.FieldName_1,'Visible','off') |
---|
| 2082 | end |
---|
[822] | 2083 | end |
---|
[772] | 2084 | else |
---|
| 2085 | set(handles_coord,'Visible','off')% no coord display for civ data |
---|
| 2086 | end |
---|
| 2087 | set(handles.FieldName,'String',FieldList) |
---|
| 2088 | else |
---|
| 2089 | set(handles.InputFields,'Visible','off') |
---|
| 2090 | end |
---|
| 2091 | |
---|
| 2092 | |
---|
[711] | 2093 | %% Check whether alphabetical sorting of input Subdir is allowed by the Action fct (for multiples series entries) |
---|
[635] | 2094 | if isfield(ParamOut,'AllowInputSort')&&isequal(ParamOut.AllowInputSort,'on')&& size(Param.InputTable,1)>1 |
---|
[620] | 2095 | [tild,iview]=sort(InputTable(:,2)); %subdirectories sorted in alphabetical order |
---|
| 2096 | set(handles.InputTable,'Data',InputTable(iview,:)); |
---|
| 2097 | MinIndex_i=get(handles.MinIndex_i,'Data'); |
---|
| 2098 | MinIndex_j=get(handles.MinIndex_j,'Data'); |
---|
| 2099 | MaxIndex_i=get(handles.MaxIndex_i,'Data'); |
---|
| 2100 | MaxIndex_j=get(handles.MaxIndex_j,'Data'); |
---|
| 2101 | set(handles.MinIndex_i,'Data',MinIndex_i(iview,:)); |
---|
| 2102 | set(handles.MinIndex_j,'Data',MinIndex_j(iview,:)); |
---|
| 2103 | set(handles.MaxIndex_i,'Data',MaxIndex_i(iview,:)); |
---|
| 2104 | set(handles.MaxIndex_j,'Data',MaxIndex_j(iview,:)); |
---|
| 2105 | TimeTable=get(handles.TimeTable,'Data'); |
---|
| 2106 | set(handles.TimeTable,'Data',TimeTable(iview,:)); |
---|
| 2107 | PairString=get(handles.PairString,'Data'); |
---|
| 2108 | set(handles.PairString,'Data',PairString(iview,:)); |
---|
[591] | 2109 | end |
---|
| 2110 | |
---|
| 2111 | %% Impose the whole input file index range if requested |
---|
| 2112 | if isfield(ParamOut,'WholeIndexRange')&&isequal(ParamOut.WholeIndexRange,'on') |
---|
[620] | 2113 | MinIndex_i=get(handles.MinIndex_i,'Data'); |
---|
| 2114 | MinIndex_j=get(handles.MinIndex_j,'Data'); |
---|
| 2115 | MaxIndex_i=get(handles.MaxIndex_i,'Data'); |
---|
| 2116 | MaxIndex_j=get(handles.MaxIndex_j,'Data'); |
---|
[635] | 2117 | set(handles.num_first_i,'String',num2str(MinIndex_i(1)))% set first as the min index (for the first line) |
---|
| 2118 | set(handles.num_last_i,'String',num2str(MaxIndex_i(1)))% set last as the max index (for the first line) |
---|
[620] | 2119 | set(handles.num_incr_i,'String','1') |
---|
[635] | 2120 | set(handles.num_first_j,'String',num2str(MinIndex_j(1)))% set first as the min index (for the first line) |
---|
| 2121 | set(handles.num_last_j,'String',num2str(MaxIndex_j(1)))% set last as the max index (for the first line) |
---|
[620] | 2122 | set(handles.num_incr_j,'String','1') |
---|
| 2123 | else % check index ranges |
---|
| 2124 | first_i=1;last_i=1;first_j=1;last_j=1; |
---|
[635] | 2125 | if isfield(Param.IndexRange,'first_i') |
---|
| 2126 | first_i=Param.IndexRange.first_i; |
---|
| 2127 | last_i=Param.IndexRange.last_i; |
---|
[2] | 2128 | end |
---|
[635] | 2129 | if isfield(Param.IndexRange,'first_j') |
---|
| 2130 | first_j=Param.IndexRange.first_j; |
---|
| 2131 | last_j=Param.IndexRange.last_j; |
---|
[620] | 2132 | end |
---|
| 2133 | if last_i < first_i || last_j < first_j , msgbox_uvmat('ERROR','last field number must be larger than the first one'),... |
---|
| 2134 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
[2] | 2135 | end |
---|
[591] | 2136 | |
---|
[772] | 2137 | %% enable or desable j index visibility |
---|
| 2138 | status_j='on';%default |
---|
[720] | 2139 | if isfield(ParamOut,'Desable_j_index')&&isequal(ParamOut.Desable_j_index,'on') |
---|
[772] | 2140 | status_j='off'; |
---|
[719] | 2141 | end |
---|
[772] | 2142 | if isempty(find(~cellfun(@isempty,SeriesData.j1_series), 1)); % case of empty j indices |
---|
| 2143 | status_j='off'; % no j index needed |
---|
| 2144 | elseif strcmp(get(handles.PairString,'Visible'),'on') |
---|
| 2145 | check_burst=cellfun(@isempty,regexp(get(handles.PairString,'Data'),'^j'));%=0 for burst case, 1 otherwise |
---|
| 2146 | if isempty(find(check_burst, 1))% if all pair string begins by j (burst) |
---|
| 2147 | status_j='off'; % no j index needed for bust case |
---|
| 2148 | end |
---|
| 2149 | end |
---|
| 2150 | enable_j(handles,status_j) % no j index needed |
---|
[719] | 2151 | |
---|
[772] | 2152 | |
---|
[591] | 2153 | %% NbSlice visibility |
---|
| 2154 | NbSliceVisible='off';%default |
---|
| 2155 | if isfield(ParamOut,'NbSlice') && isequal(ParamOut.NbSlice,'on') |
---|
| 2156 | NbSliceVisible='on'; |
---|
| 2157 | set(handles.num_NbProcess,'String',get(handles.num_NbSlice,'String'))% the nbre of processes is imposed as the nbre of slices |
---|
| 2158 | else |
---|
| 2159 | set(handles.num_NbProcess,'String','')% free nbre of processes |
---|
[2] | 2160 | end |
---|
[591] | 2161 | set(handles.num_NbSlice,'Visible',NbSliceVisible) |
---|
| 2162 | set(handles.NbSlice_title,'Visible',NbSliceVisible) |
---|
[2] | 2163 | |
---|
[591] | 2164 | |
---|
| 2165 | |
---|
| 2166 | %% Visibility of FieldTransform menu |
---|
| 2167 | FieldTransformVisible='off'; %hidden by default |
---|
| 2168 | if isfield(ParamOut,'FieldTransform') |
---|
| 2169 | FieldTransformVisible=ParamOut.FieldTransform; |
---|
| 2170 | TransformName_Callback([],[], handles) |
---|
| 2171 | end |
---|
| 2172 | set(handles.FieldTransform,'Visible',FieldTransformVisible) |
---|
[606] | 2173 | if isfield(ParamOut,'TransformPath') |
---|
| 2174 | set(handles.ActionExt,'UserData',ParamOut.TransformPath) |
---|
| 2175 | else |
---|
| 2176 | set(handles.ActionExt,'UserData',[]) |
---|
| 2177 | end |
---|
[591] | 2178 | |
---|
| 2179 | %% Visibility of projection object |
---|
| 2180 | ProjObjectVisible='off'; %hidden by default |
---|
| 2181 | if isfield(ParamOut,'ProjObject') |
---|
| 2182 | ProjObjectVisible=ParamOut.ProjObject; |
---|
| 2183 | end |
---|
| 2184 | set(handles.CheckObject,'Visible',ProjObjectVisible) |
---|
| 2185 | if ~get(handles.CheckObject,'Value') |
---|
| 2186 | ProjObjectVisible='off'; |
---|
| 2187 | end |
---|
| 2188 | set(handles.ProjObject,'Visible',ProjObjectVisible) |
---|
| 2189 | set(handles.DeleteObject,'Visible',ProjObjectVisible) |
---|
| 2190 | set(handles.ViewObject,'Visible',ProjObjectVisible) |
---|
[710] | 2191 | set(handles.EditObject,'Visible',ProjObjectVisible) |
---|
[591] | 2192 | |
---|
| 2193 | %% Visibility of mask input |
---|
| 2194 | MaskVisible='off'; %hidden by default |
---|
| 2195 | if isfield(ParamOut,'Mask') |
---|
| 2196 | MaskVisible=ParamOut.Mask; |
---|
| 2197 | end |
---|
| 2198 | set(handles.CheckMask,'Visible',MaskVisible); |
---|
| 2199 | |
---|
| 2200 | %% definition of the directory containing the output files |
---|
[844] | 2201 | if ~(isfield(SeriesData,'ActionName') && strcmp(ActionName,SeriesData.ActionName)) |
---|
| 2202 | OutputDirExt='.series'; %default |
---|
| 2203 | if isfield(ParamOut,'OutputDirExt')&&~isempty(ParamOut.OutputDirExt) |
---|
| 2204 | OutputDirExt=ParamOut.OutputDirExt; |
---|
| 2205 | end |
---|
| 2206 | set(handles.OutputDirExt,'String',OutputDirExt) |
---|
[845] | 2207 | end |
---|
| 2208 | OutputDirVisible='off'; |
---|
| 2209 | OutputSubDirMode='auto';%default |
---|
| 2210 | SubDirOut=''; |
---|
| 2211 | if isfield(ParamOut,'OutputSubDirMode') |
---|
| 2212 | OutputSubDirMode=ParamOut.OutputSubDirMode; |
---|
| 2213 | end |
---|
| 2214 | switch OutputSubDirMode |
---|
| 2215 | case 'auto';%default |
---|
| 2216 | OutputDirVisible='on'; |
---|
| 2217 | SubDir=InputTable(1:end,2); %set of subdirectories |
---|
| 2218 | SubDirOut=SubDir{1}; |
---|
| 2219 | if numel(SubDir)>1 |
---|
| 2220 | for ilist=2:numel(SubDir) |
---|
| 2221 | SubDirOut=[SubDirOut '-' SubDir{ilist}]; |
---|
[711] | 2222 | end |
---|
[845] | 2223 | end |
---|
| 2224 | case 'first' |
---|
| 2225 | OutputDirVisible='on'; |
---|
| 2226 | SubDirOut=InputTable{1,2}; %use the first subdir name (+OutputDirExt) as output subdirectory |
---|
| 2227 | case 'last' |
---|
| 2228 | OutputDirVisible='on'; |
---|
| 2229 | SubDirOut=InputTable{end,2}; %use the last subdir name (+OutputDirExt) as output subdirectory |
---|
[591] | 2230 | end |
---|
[845] | 2231 | set(handles.OutputSubDir,'String',SubDirOut) |
---|
| 2232 | set(handles.OutputDirExt,'Visible',OutputDirVisible) |
---|
| 2233 | set(handles.OutputSubDir,'Visible',OutputDirVisible) |
---|
| 2234 | set(handles.OutputDir_title,'Visible',OutputDirVisible) |
---|
| 2235 | SeriesData.ActionName=ActionName;%record ActionName for next use |
---|
[591] | 2236 | |
---|
[845] | 2237 | |
---|
| 2238 | %% visibility of the run mode (local or background or cluster) |
---|
| 2239 | if strcmp(OutputSubDirMode,'none') |
---|
| 2240 | RunModeVisible='off';% only local mode available if no output file is produced |
---|
| 2241 | else |
---|
| 2242 | RunModeVisible='on'; |
---|
| 2243 | end |
---|
| 2244 | set(handles.RunMode,'Visible',RunModeVisible) |
---|
| 2245 | set(handles.ActionExt,'Visible',RunModeVisible) |
---|
| 2246 | set(handles.RunMode_title,'Visible',RunModeVisible) |
---|
| 2247 | set(handles.ActionExt_title,'Visible',RunModeVisible) |
---|
| 2248 | |
---|
| 2249 | |
---|
[602] | 2250 | %% Expected nbre of output files |
---|
| 2251 | if isfield(ParamOut,'OutputFileMode') |
---|
[705] | 2252 | StatusData.OutputFileMode=ParamOut.OutputFileMode; |
---|
| 2253 | set(handles.status,'UserData',StatusData) |
---|
[602] | 2254 | end |
---|
| 2255 | |
---|
[591] | 2256 | %% definition of an additional parameter set, determined by an ancillary GUI |
---|
| 2257 | if isfield(ParamOut,'ActionInput') |
---|
| 2258 | set(handles.ActionInput,'Visible','on') |
---|
[598] | 2259 | ParamOut.ActionInput.Program=ActionName; % record the program in ActionInput |
---|
[591] | 2260 | SeriesData.ActionInput=ParamOut.ActionInput; |
---|
| 2261 | else |
---|
| 2262 | set(handles.ActionInput,'Visible','off') |
---|
| 2263 | if isfield(SeriesData,'ActionInput') |
---|
[772] | 2264 | SeriesData=rmfield(SeriesData,'ActionInput'); |
---|
[591] | 2265 | end |
---|
[772] | 2266 | end |
---|
[591] | 2267 | set(handles.series,'UserData',SeriesData) |
---|
[598] | 2268 | set(handles.ActionName,'BackgroundColor',[1 1 1]) |
---|
[591] | 2269 | |
---|
[41] | 2270 | %------------------------------------------------------------------------ |
---|
[446] | 2271 | % --- Executes on selection change in FieldName. |
---|
| 2272 | function FieldName_Callback(hObject, eventdata, handles) |
---|
[41] | 2273 | %------------------------------------------------------------------------ |
---|
[446] | 2274 | field_str=get(handles.FieldName,'String'); |
---|
| 2275 | field_index=get(handles.FieldName,'Value'); |
---|
[2] | 2276 | field=field_str{field_index(1)}; |
---|
[595] | 2277 | if isequal(field,'get_field...') |
---|
[775] | 2278 | SeriesData=get(handles.series,'UserData'); |
---|
| 2279 | % input line for which the field choice is relevant |
---|
| 2280 | iview=find(strcmp('netcdf',SeriesData.FileType)|strcmp('civx',SeriesData.FileType)|strcmp('civdata',SeriesData.FileType));% all nc files, icluding civ |
---|
[595] | 2281 | hget_field=findobj(allchild(0),'name','get_field'); |
---|
| 2282 | if ~isempty(hget_field) |
---|
| 2283 | delete(hget_field)%delete opened versions of get_field |
---|
| 2284 | end |
---|
[635] | 2285 | Param=read_GUI(handles.series); |
---|
[775] | 2286 | InputTable=Param.InputTable(iview,:); |
---|
[764] | 2287 | % check the existence of the first file in the series |
---|
[775] | 2288 | first_j=[];last_j=[];MinIndex_j=1;MaxIndex_j=1;%default setting for index j |
---|
| 2289 | if isfield(Param.IndexRange,'first_j');% if index j is used |
---|
| 2290 | first_j=Param.IndexRange.first_j; |
---|
| 2291 | last_j=Param.IndexRange.last_j; |
---|
| 2292 | MinIndex_j=Param.IndexRange.MinIndex_j(iview); |
---|
| 2293 | MaxIndex_j=Param.IndexRange.MaxIndex_j(iview); |
---|
| 2294 | end |
---|
[748] | 2295 | PairString=''; |
---|
[775] | 2296 | if isfield(Param.IndexRange,'PairString'); PairString=Param.IndexRange.PairString{iview}; end |
---|
[748] | 2297 | [i1,i2,j1,j2] = get_file_index(Param.IndexRange.first_i,first_j,PairString); |
---|
[775] | 2298 | FirstFileName=fullfile_uvmat(InputTable{1},InputTable{2},InputTable{3},... |
---|
| 2299 | InputTable{5},InputTable{4},i1,i2,j1,j2); |
---|
[748] | 2300 | if exist(FirstFileName,'file') |
---|
[771] | 2301 | ParamIn.Title='get_field: pick input variables and coordinates for series processing'; |
---|
[748] | 2302 | ParamIn.SeriesInput=1; |
---|
| 2303 | GetFieldData=get_field(FirstFileName,ParamIn); |
---|
[595] | 2304 | FieldList={}; |
---|
[708] | 2305 | switch GetFieldData.FieldOption |
---|
| 2306 | case 'vectors' |
---|
| 2307 | UName=GetFieldData.PanelVectors.vector_x; |
---|
| 2308 | VName=GetFieldData.PanelVectors.vector_y; |
---|
| 2309 | YName={GetFieldData.Coordinates.Coord_y}; |
---|
| 2310 | FieldList={['vec(' UName ',' VName ')'];... |
---|
| 2311 | ['norm(' UName ',' VName ')'];... |
---|
| 2312 | UName;VName}; |
---|
[771] | 2313 | case {'scalar'} |
---|
[748] | 2314 | FieldList=GetFieldData.PanelScalar.scalar; |
---|
[708] | 2315 | YName={GetFieldData.Coordinates.Coord_y}; |
---|
[748] | 2316 | if ischar(FieldList) |
---|
[764] | 2317 | FieldList={FieldList}; |
---|
[748] | 2318 | end |
---|
[764] | 2319 | case 'civdata...' |
---|
[771] | 2320 | FieldList=[set_field_list('U','V') ;{'C'}]; |
---|
| 2321 | set(handles.FieldName,'Value',1) % set menu to 'velocity |
---|
[764] | 2322 | XName='X'; |
---|
| 2323 | YName='y'; |
---|
[767] | 2324 | set(handles.VelType,'visible','on') |
---|
[772] | 2325 | set(handles.VelType_title,'visible','on') |
---|
[595] | 2326 | end |
---|
[769] | 2327 | set(handles.FieldName,'Value',1) |
---|
| 2328 | set(handles.FieldName,'String',[FieldList; {'get_field...'}]); |
---|
[708] | 2329 | if ~strcmp(GetFieldData.FieldOption,'civdata...') |
---|
[771] | 2330 | set(handles.FieldName,'Value',1:numel(FieldList))%select all input fields by default |
---|
[767] | 2331 | set(handles.VelType,'visible','off') |
---|
[772] | 2332 | set(handles.VelType_title,'visible','off') |
---|
[708] | 2333 | XName=GetFieldData.Coordinates.Coord_x; |
---|
[771] | 2334 | YName=GetFieldData.Coordinates.Coord_y; |
---|
[708] | 2335 | TimeNameStr=GetFieldData.Time.SwitchVarIndexTime; |
---|
[775] | 2336 | % get the time info |
---|
| 2337 | TimeTable=get(handles.TimeTable,'Data'); |
---|
[708] | 2338 | switch TimeNameStr |
---|
| 2339 | case 'file index' |
---|
[775] | 2340 | TimeName=''; |
---|
[708] | 2341 | case 'attribute' |
---|
[775] | 2342 | TimeName=['att:' GetFieldData.Time.TimeName]; |
---|
| 2343 | % update the time table |
---|
| 2344 | TimeTable{iview,2}=get_time(Param.IndexRange.MinIndex_i(iview),MinIndex_j,PairString,InputTable,SeriesData.FileInfo{iview},GetFieldData.Time.TimeName); % Min time |
---|
| 2345 | TimeTable{iview,3}=get_time(Param.IndexRange.first_i,first_j,PairString,InputTable,SeriesData.FileInfo{iview},GetFieldData.Time.TimeName); % first time |
---|
| 2346 | TimeTable{iview,4}=get_time(Param.IndexRange.last_i,last_j,PairString,InputTable,SeriesData.FileInfo{iview},GetFieldData.Time.TimeName); % last time |
---|
| 2347 | TimeTable{iview,5}=get_time(Param.IndexRange.MaxIndex_i(iview),MaxIndex_j,PairString,InputTable,SeriesData.FileInfo{iview},GetFieldData.Time.TimeName); % Max time |
---|
[708] | 2348 | case 'variable' |
---|
| 2349 | set(handles.TimeName,'String',['var:' GetFieldData.Time.TimeName]) |
---|
| 2350 | set(handles.NomType,'String','*') |
---|
[714] | 2351 | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')])% A VERIFIER !!!!!! |
---|
[708] | 2352 | set(handles.FileIndex,'String','') |
---|
| 2353 | ParamIn.TimeVarName=GetFieldData.Time.TimeName; |
---|
| 2354 | case 'matrix_index' |
---|
[775] | 2355 | TimeName=['dim:' GetFieldData.Time.TimeName]; |
---|
[708] | 2356 | set(handles.NomType,'String','*') |
---|
| 2357 | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
---|
| 2358 | set(handles.FileIndex,'String','') |
---|
| 2359 | ParamIn.TimeDimName=GetFieldData.Time.TimeName; |
---|
| 2360 | end |
---|
[775] | 2361 | TimeTable{iview,1}=TimeName; |
---|
| 2362 | set(handles.TimeTable,'Data',TimeTable); |
---|
[708] | 2363 | end |
---|
[771] | 2364 | set(handles.Coord_x,'String',XName) |
---|
[764] | 2365 | set(handles.Coord_y,'String',YName) |
---|
[785] | 2366 | else |
---|
| 2367 | msgbox_uvmat('ERROR',[FirstFileName ' does not exist']) |
---|
[595] | 2368 | end |
---|
[2] | 2369 | end |
---|
| 2370 | |
---|
[775] | 2371 | function [TimeValue,DtValue]=get_time(ref_i,ref_j,PairString,InputTable,FileInfo,TimeName,DtName) |
---|
| 2372 | [i1,i2,j1,j2] = get_file_index(ref_i,ref_j,PairString); |
---|
| 2373 | FileName=fullfile_uvmat(InputTable{1},InputTable{2},InputTable{3},InputTable{5},InputTable{4},i1,i2,j1,j2); |
---|
| 2374 | Data=nc2struct(FileName,[]); |
---|
| 2375 | TimeValue=[]; |
---|
| 2376 | DtValue=[]; |
---|
| 2377 | if isequal(FileInfo.FileType,'civdata') |
---|
| 2378 | if ismember(TimeName,{'civ1','filter1'}) |
---|
| 2379 | TimeValue=Data.Civ1_Time; |
---|
| 2380 | DtValue=Data.Civ1_Dt; |
---|
| 2381 | else |
---|
| 2382 | TimeValue=Data.Civ2_Time; |
---|
| 2383 | DtValue=Data.Civ2_Dt; |
---|
| 2384 | end |
---|
| 2385 | else |
---|
[776] | 2386 | if ~isempty(TimeName)&& isfield(Data,TimeName) |
---|
[775] | 2387 | TimeValue=Data.(TimeName); |
---|
| 2388 | end |
---|
| 2389 | if exist('DtName','var') && isfield(Data,DtName) |
---|
| 2390 | DtValue=Data.(DtName); |
---|
| 2391 | end |
---|
| 2392 | end |
---|
| 2393 | |
---|
[41] | 2394 | %------------------------------------------------------------------------ |
---|
[446] | 2395 | % --- Executes on selection change in FieldName_1. |
---|
| 2396 | function FieldName_1_Callback(hObject, eventdata, handles) |
---|
[41] | 2397 | %------------------------------------------------------------------------ |
---|
[446] | 2398 | field_str=get(handles.FieldName_1,'String'); |
---|
| 2399 | field_index=get(handles.FieldName_1,'Value'); |
---|
[764] | 2400 | field=field_str{field_index(1)}; |
---|
| 2401 | if isequal(field,'get_field...') |
---|
| 2402 | hget_field=findobj(allchild(0),'name','get_field'); |
---|
| 2403 | if ~isempty(hget_field) |
---|
| 2404 | delete(hget_field)%delete opened versions of get_field |
---|
| 2405 | end |
---|
| 2406 | Param=read_GUI(handles.series); |
---|
| 2407 | Param.InputTable=Param.InputTable(1,:); |
---|
| 2408 | % check the existence of the first file in the series |
---|
| 2409 | first_j=[]; |
---|
| 2410 | if isfield(Param.IndexRange,'first_j'); first_j=Param.IndexRange.first_j; end |
---|
| 2411 | if isfield(Param.IndexRange,'last_j'); last_j=Param.IndexRange.last_j; end |
---|
| 2412 | PairString=''; |
---|
| 2413 | if isfield(Param.IndexRange,'PairString'); PairString=Param.IndexRange.PairString; end |
---|
| 2414 | [i1,i2,j1,j2] = get_file_index(Param.IndexRange.first_i,first_j,PairString); |
---|
| 2415 | FirstFileName=fullfile_uvmat(Param.InputTable{1,1},Param.InputTable{1,2},Param.InputTable{1,3},... |
---|
| 2416 | Param.InputTable{1,5},Param.InputTable{1,4},i1,i2,j1,j2); |
---|
| 2417 | if exist(FirstFileName,'file') |
---|
| 2418 | ParamIn.SeriesInput=1; |
---|
| 2419 | GetFieldData=get_field(FirstFileName,ParamIn); |
---|
| 2420 | FieldList={}; |
---|
| 2421 | switch GetFieldData.FieldOption |
---|
| 2422 | case 'vectors' |
---|
| 2423 | UName=GetFieldData.PanelVectors.vector_x; |
---|
| 2424 | VName=GetFieldData.PanelVectors.vector_y; |
---|
| 2425 | FieldList={['vec(' UName ',' VName ')'];... |
---|
| 2426 | ['norm(' UName ',' VName ')'];... |
---|
| 2427 | UName;VName}; |
---|
| 2428 | case {'scalar','pick variables'} |
---|
| 2429 | FieldList=GetFieldData.PanelScalar.scalar; |
---|
| 2430 | if ischar(FieldList) |
---|
| 2431 | FieldList={FieldList}; |
---|
| 2432 | end |
---|
| 2433 | case '1D plot' |
---|
| 2434 | |
---|
| 2435 | case 'civdata...' |
---|
| 2436 | FieldList=set_field_list('U','V','C'); |
---|
| 2437 | set(handles.FieldName,'Value',2) % set menu to 'velocity |
---|
| 2438 | end |
---|
| 2439 | if ~strcmp(GetFieldData.FieldOption,'civdata...') |
---|
| 2440 | TimeNameStr=GetFieldData.Time.SwitchVarIndexTime; |
---|
| 2441 | switch TimeNameStr |
---|
| 2442 | case 'file index' |
---|
| 2443 | set(handles.TimeName,'String',''); |
---|
| 2444 | case 'attribute' |
---|
| 2445 | set(handles.TimeName,'String',['att:' GetFieldData.Time.TimeName]); |
---|
| 2446 | case 'variable' |
---|
| 2447 | set(handles.TimeName,'String',['var:' GetFieldData.Time.TimeName]) |
---|
| 2448 | set(handles.NomType,'String','*') |
---|
| 2449 | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')])% A VERIFIER !!!!!! |
---|
| 2450 | set(handles.FileIndex,'String','') |
---|
| 2451 | ParamIn.TimeVarName=GetFieldData.Time.TimeName; |
---|
| 2452 | case 'matrix_index' |
---|
| 2453 | set(handles.TimeName,'String',['dim:' GetFieldData.Time.TimeName]); |
---|
| 2454 | set(handles.NomType,'String','*') |
---|
| 2455 | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
---|
| 2456 | set(handles.FileIndex,'String','') |
---|
| 2457 | ParamIn.TimeDimName=GetFieldData.Time.TimeName; |
---|
| 2458 | end |
---|
| 2459 | end |
---|
| 2460 | set(handles.FieldName_1,'Value',1) |
---|
| 2461 | set(handles.FieldName_1,'String',[FieldList; {'get_field...'}]); |
---|
| 2462 | end |
---|
[2] | 2463 | end |
---|
[29] | 2464 | |
---|
[244] | 2465 | |
---|
[2] | 2466 | %%%%%%%%%%%%% |
---|
| 2467 | function [ind_remove]=find_pairs(dirpair,ind_i,last_i) |
---|
[339] | 2468 | indsel=ind_i; |
---|
| 2469 | indiff=diff(ind_i); %test index increment to detect multiplets (several pairs with the same index ind_i) and holes in the series |
---|
| 2470 | indiff=[1 indiff last_i-ind_i(end)+1];%for testing gaps with the imposed bounds |
---|
| 2471 | if ~isempty(indiff) |
---|
| 2472 | indiff2=diff(indiff); |
---|
| 2473 | indiffp=[indiff2 1]; |
---|
| 2474 | indiffm=[1 indiff2]; |
---|
| 2475 | ind_multi_m=find((indiff==0)&(indiffm<0))-1;%indices of first members of multiplets |
---|
| 2476 | ind_multi_p=find((indiff==0)&(indiffp>0));%indices of last members of multiplets |
---|
| 2477 | %for each multiplet, select the most recent file |
---|
| 2478 | ind_remove=[]; |
---|
| 2479 | for i=1:length(ind_multi_m) |
---|
| 2480 | ind_pairs=ind_multi_m(i):ind_multi_p(i); |
---|
| 2481 | for imulti=1:length(ind_pairs) |
---|
| 2482 | datepair(imulti)=datenum(dirpair(ind_pairs(imulti)).date);%dates of creation |
---|
[2] | 2483 | end |
---|
[339] | 2484 | [datenew,indsort2]=sort(datepair); %sort the multiplet by creation date |
---|
| 2485 | ind_s=indsort2(1:end-1);% |
---|
| 2486 | ind_remove=[ind_remove ind_pairs(ind_s)];%remove these indices, leave the last one |
---|
| 2487 | end |
---|
| 2488 | end |
---|
[2] | 2489 | |
---|
[89] | 2490 | %------------------------------------------------------------------------ |
---|
[408] | 2491 | % --- determine the list of index pairstring of processing file |
---|
[32] | 2492 | function [num_i1,num_i2,num_j1,num_j2,num_i_out,num_j_out]=find_file_indices(num_i,num_j,ind_shift,NomType,mode) |
---|
[89] | 2493 | %------------------------------------------------------------------------ |
---|
[32] | 2494 | num_i1=num_i;% set of first image numbers by default |
---|
| 2495 | num_i2=num_i; |
---|
| 2496 | num_j1=num_j; |
---|
| 2497 | num_j2=num_j; |
---|
| 2498 | num_i_out=num_i; |
---|
| 2499 | num_j_out=num_j; |
---|
[339] | 2500 | % if isequal (NomType,'_1-2_1') || isequal (NomType,'_1-2') |
---|
| 2501 | if isequal(mode,'series(Di)') |
---|
[32] | 2502 | num_i1_line=num_i+ind_shift(3);% set of first image numbers |
---|
| 2503 | num_i2_line=num_i+ind_shift(4); |
---|
| 2504 | % adjust the first and last field number |
---|
| 2505 | indsel=find(num_i1_line >= 1); |
---|
| 2506 | num_i_out=num_i(indsel); |
---|
| 2507 | num_i1_line=num_i1_line(indsel); |
---|
| 2508 | num_i2_line=num_i2_line(indsel); |
---|
| 2509 | num_j1=meshgrid(num_j,ones(size(num_i1_line))); |
---|
| 2510 | num_j2=meshgrid(num_j,ones(size(num_i1_line))); |
---|
| 2511 | [xx,num_i1]=meshgrid(num_j,num_i1_line); |
---|
| 2512 | [xx,num_i2]=meshgrid(num_j,num_i2_line); |
---|
[339] | 2513 | elseif isequal (mode,'series(Dj)')||isequal (mode,'bursts') |
---|
[32] | 2514 | if isequal(mode,'bursts') %case of bursts (png_old or png_2D) |
---|
| 2515 | num_j1=ind_shift(1)*ones(size(num_i)); |
---|
| 2516 | num_j2=ind_shift(2)*ones(size(num_i)); |
---|
| 2517 | else |
---|
| 2518 | num_j1_col=num_j+ind_shift(1);% set of first image numbers |
---|
| 2519 | num_j2_col=num_j+ind_shift(2); |
---|
| 2520 | % adjust the first field number |
---|
| 2521 | indsel=find((num_j1_col >= 1)); |
---|
| 2522 | num_j_out=num_j(indsel); |
---|
| 2523 | num_j1_col=num_j1_col(indsel); |
---|
| 2524 | num_j2_col=num_j2_col(indsel); |
---|
| 2525 | [num_i1,num_j1]=meshgrid(num_i,num_j1_col); |
---|
| 2526 | [num_i2,num_j2]=meshgrid(num_i,num_j2_col); |
---|
| 2527 | end |
---|
| 2528 | end |
---|
[2] | 2529 | |
---|
[41] | 2530 | %------------------------------------------------------------------------ |
---|
[446] | 2531 | % --- Executes on button press in CheckObject. |
---|
[710] | 2532 | function CheckObject_Callback(hObject, eventdata, handles) |
---|
[630] | 2533 | %------------------------------------------------------------------------ |
---|
[606] | 2534 | hset_object=findobj(allchild(0),'tag','set_object');%find the set_object interface handle |
---|
[630] | 2535 | if get(handles.CheckObject,'Value') |
---|
[606] | 2536 | SeriesData=get(handles.series,'UserData'); |
---|
[630] | 2537 | if isfield(SeriesData,'ProjObject') && ~isempty(SeriesData.ProjObject) |
---|
| 2538 | set(handles.ViewObject,'Value',1) |
---|
| 2539 | ViewObject_Callback(hObject, eventdata, handles) |
---|
| 2540 | else |
---|
[606] | 2541 | if ishandle(hset_object) |
---|
| 2542 | uistack(hset_object,'top')% show the GUI set_object if opened |
---|
| 2543 | else |
---|
| 2544 | %get the object file |
---|
| 2545 | InputTable=get(handles.InputTable,'Data'); |
---|
| 2546 | defaultname=InputTable{1,1}; |
---|
| 2547 | if isempty(defaultname) |
---|
| 2548 | defaultname={''}; |
---|
| 2549 | end |
---|
[667] | 2550 | fileinput=uigetfile_uvmat('pick a xml object file (or use uvmat to create it)',defaultname,'.xml'); |
---|
[710] | 2551 | if isempty(fileinput)% exit if no object file is selected |
---|
| 2552 | set(handles.CheckObject,'Value',0) |
---|
| 2553 | return |
---|
| 2554 | end |
---|
[606] | 2555 | %read the file |
---|
| 2556 | data=xml2struct(fileinput); |
---|
| 2557 | if ~isfield(data,'Type') |
---|
| 2558 | msgbox_uvmat('ERROR',[fileinput ' is not an object xml file']) |
---|
[710] | 2559 | set(handles.CheckObject,'Value',0) |
---|
[606] | 2560 | return |
---|
| 2561 | end |
---|
| 2562 | if ~isfield(data,'ProjMode') |
---|
| 2563 | data.ProjMode='none'; |
---|
| 2564 | end |
---|
| 2565 | hset_object=set_object(data);% call the set_object interface |
---|
[735] | 2566 | set(hset_object,'Name','set_object_series')% name to distinguish from set_object used with uvmat |
---|
[41] | 2567 | end |
---|
[606] | 2568 | ProjObject=read_GUI(hset_object); |
---|
| 2569 | set(handles.ProjObject,'String',ProjObject.Name);%display the object name |
---|
| 2570 | SeriesData=get(handles.series,'UserData'); |
---|
| 2571 | SeriesData.ProjObject=ProjObject; |
---|
| 2572 | set(handles.series,'UserData',SeriesData); |
---|
| 2573 | end |
---|
[630] | 2574 | set(handles.EditObject,'Visible','on'); |
---|
[606] | 2575 | set(handles.DeleteObject,'Visible','on'); |
---|
| 2576 | set(handles.ViewObject,'Visible','on'); |
---|
| 2577 | set(handles.ProjObject,'Visible','on'); |
---|
[2] | 2578 | else |
---|
[630] | 2579 | set(handles.EditObject,'Visible','off'); |
---|
[606] | 2580 | set(handles.DeleteObject,'Visible','off'); |
---|
| 2581 | set(handles.ViewObject,'Visible','off'); |
---|
| 2582 | if ~ishandle(hset_object) |
---|
[710] | 2583 | set(handles.ViewObject,'Value',0); |
---|
[606] | 2584 | end |
---|
| 2585 | set(handles.ProjObject,'Visible','off'); |
---|
[2] | 2586 | end |
---|
| 2587 | |
---|
[630] | 2588 | %------------------------------------------------------------------------ |
---|
| 2589 | % --- Executes on button press in ViewObject. |
---|
| 2590 | %------------------------------------------------------------------------ |
---|
| 2591 | function ViewObject_Callback(hObject, eventdata, handles) |
---|
| 2592 | |
---|
[675] | 2593 | UserData=get(handles.series,'UserData'); |
---|
| 2594 | hset_object=findobj(allchild(0),'Tag','set_object'); |
---|
| 2595 | if ~isempty(hset_object) |
---|
| 2596 | delete(hset_object)% refresh set_object if already opened |
---|
| 2597 | end |
---|
| 2598 | hset_object=set_object(UserData.ProjObject); |
---|
| 2599 | set(hset_object,'Name','view_object_series') |
---|
[630] | 2600 | |
---|
[675] | 2601 | |
---|
[630] | 2602 | %------------------------------------------------------------------------ |
---|
| 2603 | % --- Executes on button press in EditObject. |
---|
[710] | 2604 | function EditObject_Callback(hObject, eventdata, handles) |
---|
[630] | 2605 | %------------------------------------------------------------------------ |
---|
| 2606 | if get(handles.EditObject,'Value') |
---|
| 2607 | set(handles.ViewObject,'Value',0) |
---|
| 2608 | UserData=get(handles.series,'UserData'); |
---|
| 2609 | hset_object=set_object(UserData.ProjObject); |
---|
| 2610 | set(hset_object,'Name','edit_object_series') |
---|
| 2611 | set(get(hset_object,'Children'),'Enable','on') |
---|
| 2612 | else |
---|
[667] | 2613 | hset_object=findobj(allchild(0),'Tag','set_object'); |
---|
[630] | 2614 | if ~isempty(hset_object) |
---|
[667] | 2615 | set(get(hset_object,'Children'),'Enable','off') |
---|
[630] | 2616 | end |
---|
| 2617 | end |
---|
| 2618 | |
---|
| 2619 | %------------------------------------------------------------------------ |
---|
| 2620 | % --- Executes on button press in DeleteObject. |
---|
[710] | 2621 | function DeleteObject_Callback(hObject, eventdata, handles) |
---|
[630] | 2622 | %------------------------------------------------------------------------ |
---|
[710] | 2623 | SeriesData=get(handles.series,'UserData'); |
---|
| 2624 | SeriesData.ProjObject=[]; |
---|
| 2625 | set(handles.series,'UserData',SeriesData) |
---|
| 2626 | set(handles.ProjObject,'String','') |
---|
| 2627 | set(handles.ProjObject,'Visible','off') |
---|
| 2628 | set(handles.CheckObject,'Value',0) |
---|
| 2629 | set(handles.ViewObject,'Visible','off') |
---|
| 2630 | set(handles.EditObject,'Visible','off') |
---|
[735] | 2631 | hset_object=findobj(allchild(0),'name','set_object_series'); |
---|
[710] | 2632 | if ~isempty(hset_object) |
---|
| 2633 | delete(hset_object) |
---|
| 2634 | end |
---|
| 2635 | set(handles.DeleteObject,'Visible','off') |
---|
[630] | 2636 | |
---|
[667] | 2637 | %------------------------------------------------------------------------ |
---|
| 2638 | % --- Executed when CheckMask is activated |
---|
| 2639 | %------------------------------------------------------------------------ |
---|
[446] | 2640 | function CheckMask_Callback(hObject, eventdata, handles) |
---|
[667] | 2641 | |
---|
[630] | 2642 | if get(handles.CheckMask,'Value') |
---|
[636] | 2643 | InputTable=get(handles.InputTable,'Data'); |
---|
[667] | 2644 | nbview=size(InputTable,1); |
---|
[672] | 2645 | MaskTable=cell(nbview,1);%default |
---|
| 2646 | ListMask=cell(nbview,1);%default |
---|
[675] | 2647 | MaskData=get(handles.MaskTable,'Data'); |
---|
| 2648 | MaskData(size(MaskData,1):nbview,1)=cell(size(MaskData,1):nbview,1);%complement if undefined lines |
---|
[667] | 2649 | for iview=1:nbview |
---|
[672] | 2650 | ListMask{iview,1}=num2str(iview); |
---|
[643] | 2651 | RootPath=InputTable{iview,1}; |
---|
[667] | 2652 | if ~isempty(RootPath) |
---|
| 2653 | if isempty(MaskData{iview}) |
---|
| 2654 | SubDir=InputTable{iview,2}; |
---|
[675] | 2655 | MaskPath=fullfile(RootPath,[regexprep(SubDir,'\..*','') '.mask']);%take the root part of SubDir, before the first dot '.' |
---|
| 2656 | if exist(MaskPath,'dir') |
---|
| 2657 | ListStruct=dir(MaskPath);%look for a mask file |
---|
| 2658 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
---|
| 2659 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
---|
| 2660 | ListFiles=ListCells(1,:);%list of file and dri names |
---|
| 2661 | ListFiles=ListFiles(~check_dir);%list of file names (excluding dir) |
---|
| 2662 | mdetect=0; |
---|
| 2663 | if ~isempty(ListFiles) |
---|
| 2664 | for ifile=1:numel(ListFiles) |
---|
| 2665 | [tild,tild,MaskFile{ifile},i1_series,i2_series,j1_series,j2_series,MaskNomType,MaskFileType]=find_file_series(MaskPath,ListFiles{ifile},0); |
---|
| 2666 | if strcmp(MaskFileType,'image') && isempty(i2_series) && isempty(j2_series) |
---|
| 2667 | mdetect=1; |
---|
| 2668 | MaskName=ListFiles{ifile}; |
---|
| 2669 | end |
---|
| 2670 | if ~strcmp(MaskFile{ifile},MaskFile{1}) |
---|
| 2671 | mdetect=0;% cancel detection test in case of multiple masks, use the brower for selection |
---|
| 2672 | break |
---|
| 2673 | end |
---|
| 2674 | end |
---|
| 2675 | end |
---|
| 2676 | if mdetect==1 |
---|
| 2677 | MaskName=fullfile(MaskPath,'mask_1.png'); |
---|
| 2678 | else |
---|
| 2679 | MaskName=uigetfile_uvmat('select a mask file:',MaskPath,'image'); |
---|
| 2680 | end |
---|
| 2681 | else |
---|
[667] | 2682 | MaskName=uigetfile_uvmat('select a mask file:',RootPath,'image'); |
---|
| 2683 | end |
---|
| 2684 | MaskTable{iview,1}=MaskName ; |
---|
| 2685 | ListMask{iview,1}=num2str(iview); |
---|
| 2686 | end |
---|
[643] | 2687 | end |
---|
[636] | 2688 | end |
---|
[667] | 2689 | set(handles.MaskTable,'Data',MaskTable) |
---|
| 2690 | set(handles.MaskTable,'Visible','on') |
---|
| 2691 | set(handles.MaskBrowse,'Visible','on') |
---|
| 2692 | set(handles.ListMask,'Visible','on') |
---|
| 2693 | set(handles.ListMask,'String',ListMask) |
---|
[672] | 2694 | set(handles.ListMask,'Value',1) |
---|
[667] | 2695 | else |
---|
| 2696 | set(handles.MaskTable,'Visible','off') |
---|
| 2697 | set(handles.MaskBrowse,'Visible','off') |
---|
| 2698 | set(handles.ListMask,'Visible','off') |
---|
[2] | 2699 | end |
---|
| 2700 | |
---|
[667] | 2701 | %------------------------------------------------------------------------ |
---|
| 2702 | % --- Executes on button press in MaskBrowse. |
---|
| 2703 | %------------------------------------------------------------------------ |
---|
| 2704 | function MaskBrowse_Callback(hObject, eventdata, handles) |
---|
[675] | 2705 | |
---|
[667] | 2706 | InputTable=get(handles.InputTable,'Data'); |
---|
| 2707 | iview=get(handles.ListMask,'Value'); |
---|
| 2708 | RootPath=InputTable{iview,1}; |
---|
| 2709 | MaskName=uigetfile_uvmat('select a mask file:',RootPath,'image'); |
---|
| 2710 | if ~isempty(MaskName) |
---|
| 2711 | MaskTable=get(handles.MaskTable,'Data'); |
---|
[675] | 2712 | MaskTable{iview,1}=MaskName ; |
---|
| 2713 | set(handles.MaskTable,'Data',MaskTable) |
---|
[667] | 2714 | end |
---|
| 2715 | |
---|
| 2716 | %------------------------------------------------------------------------ |
---|
| 2717 | % --- Executes when selected cell(s) is changed in MaskTable. |
---|
| 2718 | %------------------------------------------------------------------------ |
---|
| 2719 | function MaskTable_CellSelectionCallback(hObject, eventdata, handles) |
---|
| 2720 | |
---|
| 2721 | if numel(eventdata.Indices)>=1 |
---|
| 2722 | set(handles.ListMask,'Value',eventdata.Indices(1)) |
---|
| 2723 | end |
---|
| 2724 | |
---|
[41] | 2725 | %------------------------------------------------------------------- |
---|
[2] | 2726 | function MenuHelp_Callback(hObject, eventdata, handles) |
---|
[41] | 2727 | %------------------------------------------------------------------- |
---|
[775] | 2728 | |
---|
| 2729 | |
---|
[772] | 2730 | % path_to_uvmat=which ('uvmat');% check the path of uvmat |
---|
| 2731 | % pathelp=fileparts(path_to_uvmat); |
---|
| 2732 | % helpfile=fullfile(pathelp,'uvmat_doc','uvmat_doc.html'); |
---|
| 2733 | % if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the sub-directory /uvmat_doc of the UVMAT package') |
---|
| 2734 | % else |
---|
| 2735 | % addpath (fullfile(pathelp,'uvmat_doc')) |
---|
| 2736 | % web([helpfile '#series']) |
---|
| 2737 | % end |
---|
[2] | 2738 | |
---|
[41] | 2739 | %------------------------------------------------------------------- |
---|
[446] | 2740 | % --- Executes on selection change in TransformName. |
---|
| 2741 | function TransformName_Callback(hObject, eventdata, handles) |
---|
[591] | 2742 | %---------------------------------------------------------------------- |
---|
| 2743 | TransformList=get(handles.TransformName,'String'); |
---|
| 2744 | TransformIndex=get(handles.TransformName,'Value'); |
---|
| 2745 | TransformName=TransformList{TransformIndex}; |
---|
| 2746 | TransformPathList=get(handles.TransformName,'UserData'); |
---|
| 2747 | nb_builtin_transform=4; |
---|
[727] | 2748 | if isequal(TransformName,'more...'); |
---|
[694] | 2749 | FileName=uigetfile_uvmat('Pick a transform function',get(handles.TransformPath,'String'),'.m'); |
---|
| 2750 | if isempty(FileName) |
---|
[591] | 2751 | return %browser closed without choice |
---|
| 2752 | end |
---|
| 2753 | [TransformPath,TransformName,TransformExt]=fileparts(FileName);% removes extension .m |
---|
| 2754 | if ~strcmp(TransformExt,'.m') |
---|
[39] | 2755 | msgbox_uvmat('ERROR','a Matlab function .m must be introduced'); |
---|
| 2756 | return |
---|
| 2757 | end |
---|
[591] | 2758 | % insert the choice in the menu |
---|
| 2759 | TransformIndex=find(strcmp(TransformName,TransformList),1);% look for the selected function in the menu Action |
---|
| 2760 | if isempty(TransformIndex)%the input string does not exist in the menu |
---|
| 2761 | TransformIndex= length(TransformList); |
---|
[635] | 2762 | TransformList=[TransformList(1:end-1);{TransformName};TransformList(end)];% the selected function is appended in the menu, before the last item 'more...' |
---|
[591] | 2763 | set(handles.TransformName,'String',TransformList) |
---|
| 2764 | TransformPathList=[TransformPathList;{TransformPath}]; |
---|
[727] | 2765 | else% the input function already exist, we update its path (possibly new) |
---|
| 2766 | TransformPathList{TransformIndex}=TransformPath;% |
---|
| 2767 | set(handles.TransformName,'Value',TransformIndex) |
---|
[591] | 2768 | end |
---|
[39] | 2769 | % save the new menu in the personal file 'uvmat_perso.mat' |
---|
| 2770 | dir_perso=prefdir;%personal Matalb directory |
---|
| 2771 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 2772 | if exist(profil_perso,'file') |
---|
[591] | 2773 | for ilist=nb_builtin_transform+1:numel(TransformPathList) |
---|
| 2774 | TransformListUser{ilist-nb_builtin_transform}=TransformList{ilist}; |
---|
| 2775 | TransformPathListUser{ilist-nb_builtin_transform}=TransformPathList{ilist}; |
---|
[39] | 2776 | end |
---|
[694] | 2777 | TransformPathListUser=TransformPathListUser'; |
---|
| 2778 | TransformListUser=TransformListUser'; |
---|
[591] | 2779 | save (profil_perso,'TransformPathListUser','TransformListUser','-append'); %store the root name for future opening of uvmat |
---|
[39] | 2780 | end |
---|
| 2781 | end |
---|
[2] | 2782 | |
---|
[591] | 2783 | %display the current function path |
---|
| 2784 | set(handles.TransformPath,'String',TransformPathList{TransformIndex}); %show the path to the senlected function |
---|
| 2785 | set(handles.TransformName,'UserData',TransformPathList); |
---|
[350] | 2786 | |
---|
[635] | 2787 | %------------------------------------------------------------------------ |
---|
| 2788 | % --- fct activated by the upper bar menu ExportConfig |
---|
| 2789 | %------------------------------------------------------------------------ |
---|
[772] | 2790 | function MenuDisplayConfig_Callback(hObject, eventdata, handles) |
---|
[358] | 2791 | |
---|
[635] | 2792 | global Param |
---|
| 2793 | Param=read_GUI_series(handles); |
---|
| 2794 | evalin('base','global Param')%make CurData global in the workspace |
---|
[446] | 2795 | display('current series config :') |
---|
[635] | 2796 | evalin('base','Param') %display CurData in the workspace |
---|
[446] | 2797 | commandwindow; %brings the Matlab command window to the front |
---|
[472] | 2798 | |
---|
[635] | 2799 | %------------------------------------------------------------------------ |
---|
[710] | 2800 | % --- fct activated by the upper bar menu InportConfig: import |
---|
| 2801 | % menu settings from an xml file (stored in /0_XML for each run) |
---|
[635] | 2802 | %------------------------------------------------------------------------ |
---|
[603] | 2803 | function MenuImportConfig_Callback(hObject, eventdata, handles) |
---|
[772] | 2804 | |
---|
[851] | 2805 | %% use a browser to choose the xml file containing the processing config |
---|
[603] | 2806 | InputTable=get(handles.InputTable,'Data'); |
---|
[851] | 2807 | oldfile=InputTable{1,1};%current path in InputTable |
---|
[714] | 2808 | if isempty(oldfile) |
---|
| 2809 | % use a file name stored in prefdir |
---|
| 2810 | dir_perso=prefdir; |
---|
| 2811 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 2812 | if exist(profil_perso,'file') |
---|
| 2813 | h=load (profil_perso); |
---|
| 2814 | if isfield(h,'RootPath') && ischar(h.RootPath) |
---|
| 2815 | oldfile=h.RootPath; |
---|
| 2816 | end |
---|
| 2817 | end |
---|
| 2818 | end |
---|
| 2819 | filexml=uigetfile_uvmat('pick a xml parameter file',oldfile,'.xml');% get the xml file containing processing parameters |
---|
[851] | 2820 | if isempty(filexml), return, end % quit function if an xml file has not been opened |
---|
| 2821 | |
---|
| 2822 | %% fill the GUI series with the content of the xml file |
---|
| 2823 | Param=xml2struct(filexml);% read the input xml file as a Matlab structure |
---|
| 2824 | |
---|
| 2825 | % ask to stop current Action if button RUN is in action (another process is already running) |
---|
| 2826 | if isequal(get(handles.RUN,'Value'),1) |
---|
| 2827 | answer= msgbox_uvmat('INPUT_Y-N','stop current Action process?'); |
---|
| 2828 | if strcmp(answer,'Yes') |
---|
| 2829 | STOP_Callback(hObject, eventdata, handles) |
---|
| 2830 | else |
---|
| 2831 | return |
---|
[705] | 2832 | end |
---|
[664] | 2833 | end |
---|
[851] | 2834 | Param.Action.RUN=0; %desactivate the input RUN=1 |
---|
[603] | 2835 | |
---|
[851] | 2836 | fill_GUI(Param,handles.series)% fill the elements of the GUI series with the input parameters |
---|
| 2837 | SeriesData=get(handles.series,'UserData'); |
---|
| 2838 | if isfield(Param,'InputFields') |
---|
| 2839 | ListField=Param.InputFields.FieldName; |
---|
| 2840 | if ischar(ListField),ListField={ListField}; end |
---|
| 2841 | set(handles.FieldName,'String',[ListField;{'get-field...'}]) |
---|
| 2842 | set(handles.FieldName,'Value',1:numel(ListField)) |
---|
| 2843 | set(handles.FieldName,'Visible','on') |
---|
| 2844 | end |
---|
| 2845 | if isfield(Param,'ActionInput')% introduce parameters specific to an Action fct, for instance PIV parameters |
---|
| 2846 | set(handles.ActionInput,'Visible','on') |
---|
| 2847 | set(handles.ActionInput,'Value',0) |
---|
| 2848 | Param.ActionInput.ConfigSource=filexml;% record the source of config for future info |
---|
| 2849 | SeriesData.ActionInput=Param.ActionInput; |
---|
| 2850 | end |
---|
| 2851 | if isfield(Param,'ProjObject') %introduce projection object if relevant |
---|
| 2852 | SeriesData.ProjObject=Param.ProjObject; |
---|
| 2853 | end |
---|
| 2854 | set(handles.series,'UserData',SeriesData) |
---|
| 2855 | if isfield(Param,'CheckObject') && isequal(Param.CheckObject,1) |
---|
| 2856 | set(handles.ProjObject,'String',Param.ProjObject.Name) |
---|
| 2857 | set(handles.ViewObject,'Visible','on') |
---|
| 2858 | set(handles.EditObject,'Visible','on') |
---|
| 2859 | set(handles.DeleteObject,'Visible','on') |
---|
| 2860 | else |
---|
| 2861 | set(handles.ProjObject,'String','') |
---|
| 2862 | set(handles.ProjObject,'Visible','off') |
---|
| 2863 | set(handles.ViewObject,'Visible','off') |
---|
| 2864 | set(handles.EditObject,'Visible','off') |
---|
| 2865 | set(handles.DeleteObject,'Visible','off') |
---|
| 2866 | end |
---|
| 2867 | set(handles.REFRESH,'BackgroundColor',[1 0 1]); %paint REFRESH button in magenta to indicate that it should be activated |
---|
[773] | 2868 | |
---|
| 2869 | |
---|
[635] | 2870 | %------------------------------------------------------------------------ |
---|
| 2871 | % --- Executes when the GUI series is resized. |
---|
| 2872 | %------------------------------------------------------------------------ |
---|
| 2873 | function series_ResizeFcn(hObject, eventdata, handles) |
---|
[525] | 2874 | |
---|
[526] | 2875 | %% input table |
---|
| 2876 | set(handles.InputTable,'Unit','pixel') |
---|
| 2877 | Pos=get(handles.InputTable,'Position'); |
---|
| 2878 | set(handles.InputTable,'Unit','normalized') |
---|
| 2879 | ColumnWidth=round([0.5 0.14 0.14 0.14 0.08]*(Pos(3)-52)); |
---|
| 2880 | ColumnWidth=num2cell(ColumnWidth); |
---|
| 2881 | set(handles.InputTable,'ColumnWidth',ColumnWidth) |
---|
| 2882 | |
---|
[620] | 2883 | %% MinIndex_j and MaxIndex_i |
---|
| 2884 | unit=get(handles.MinIndex_i,'Unit'); |
---|
| 2885 | set(handles.MinIndex_i,'Unit','pixel') |
---|
| 2886 | Pos=get(handles.MinIndex_i,'Position'); |
---|
| 2887 | set(handles.MinIndex_i,'Unit',unit) |
---|
| 2888 | set(handles.MinIndex_i,'ColumnWidth',{Pos(3)-18}) |
---|
| 2889 | set(handles.MaxIndex_i,'ColumnWidth',{Pos(3)-18}) |
---|
| 2890 | set(handles.MinIndex_j,'ColumnWidth',{Pos(3)-18}) |
---|
| 2891 | set(handles.MaxIndex_j,'ColumnWidth',{Pos(3)-18}) |
---|
[526] | 2892 | |
---|
| 2893 | %% TimeTable |
---|
| 2894 | set(handles.TimeTable,'Unit','pixel') |
---|
| 2895 | Pos=get(handles.TimeTable,'Position'); |
---|
| 2896 | set(handles.TimeTable,'Unit','normalized') |
---|
[620] | 2897 | % ColumnWidth=get(handles.TimeTable,'ColumnWidth'); |
---|
[775] | 2898 | ColumnWidth=num2cell(floor([0.2 0.2 0.2 0.2 0.2]*(Pos(3)-20))); |
---|
[526] | 2899 | set(handles.TimeTable,'ColumnWidth',ColumnWidth) |
---|
| 2900 | |
---|
| 2901 | |
---|
| 2902 | %% PairString |
---|
| 2903 | set(handles.PairString,'Unit','pixel') |
---|
| 2904 | Pos=get(handles.PairString,'Position'); |
---|
| 2905 | set(handles.PairString,'Unit','normalized') |
---|
| 2906 | set(handles.PairString,'ColumnWidth',{Pos(3)-5}) |
---|
[586] | 2907 | |
---|
[667] | 2908 | %% MaskTable |
---|
| 2909 | set(handles.MaskTable,'Unit','pixel') |
---|
| 2910 | Pos=get(handles.MaskTable,'Position'); |
---|
| 2911 | set(handles.MaskTable,'Unit','normalized') |
---|
| 2912 | set(handles.MaskTable,'ColumnWidth',{Pos(3)-5}) |
---|
| 2913 | |
---|
[648] | 2914 | %------------------------------------------------------------------------ |
---|
[586] | 2915 | % --- Executes on button press in status. |
---|
[648] | 2916 | %------------------------------------------------------------------------ |
---|
[586] | 2917 | function status_Callback(hObject, eventdata, handles) |
---|
[591] | 2918 | |
---|
[595] | 2919 | if get(handles.status,'Value') |
---|
| 2920 | set(handles.status,'BackgroundColor',[1 1 0]) |
---|
| 2921 | drawnow |
---|
| 2922 | Param=read_GUI(handles.series); |
---|
| 2923 | RootPath=Param.InputTable{1,1}; |
---|
[599] | 2924 | if ~isfield(Param,'OutputSubDir') |
---|
[825] | 2925 | msgbox_uvmat('ERROR','no standard sub-directory definition for output files, use a browser to check the output') |
---|
[845] | 2926 | set(handles.status,'BackgroundColor',[0 1 0]) |
---|
[599] | 2927 | return |
---|
| 2928 | end |
---|
[595] | 2929 | OutputSubDir=[Param.OutputSubDir Param.OutputDirExt];% subdirectory for output files |
---|
| 2930 | OutputDir=fullfile(RootPath,OutputSubDir); |
---|
[714] | 2931 | if exist(OutputDir,'dir') |
---|
| 2932 | uigetfile_uvmat('status_display',OutputDir) |
---|
| 2933 | else |
---|
| 2934 | msgbox_uvmat('ERROR','output folder not created yet: calculation did not start') |
---|
| 2935 | set(handles.status,'BackgroundColor',[0 1 0]) |
---|
| 2936 | end |
---|
[595] | 2937 | else |
---|
| 2938 | %% delete current display fig if selection is off |
---|
[586] | 2939 | set(handles.status,'BackgroundColor',[0 1 0]) |
---|
[644] | 2940 | hfig=findobj(allchild(0),'name','status_display'); |
---|
[586] | 2941 | if ~isempty(hfig) |
---|
| 2942 | delete(hfig) |
---|
| 2943 | end |
---|
| 2944 | return |
---|
| 2945 | end |
---|
[595] | 2946 | |
---|
| 2947 | |
---|
| 2948 | %------------------------------------------------------------------------ |
---|
| 2949 | % launched by selecting a file on the list |
---|
[648] | 2950 | %------------------------------------------------------------------------ |
---|
[595] | 2951 | function view_file(hObject, eventdata) |
---|
[648] | 2952 | |
---|
[595] | 2953 | list=get(hObject,'String'); |
---|
| 2954 | index=get(hObject,'Value'); |
---|
| 2955 | rootroot=get(hObject,'UserData'); |
---|
| 2956 | selectname=list{index}; |
---|
| 2957 | ind_dot=regexp(selectname,'\.\.\.'); |
---|
| 2958 | if ~isempty(ind_dot) |
---|
| 2959 | selectname=selectname(1:ind_dot-1); |
---|
[586] | 2960 | end |
---|
[595] | 2961 | FullSelectName=fullfile(rootroot,selectname); |
---|
| 2962 | if exist(FullSelectName,'dir')% a directory has been selected |
---|
| 2963 | ListFiles=dir(FullSelectName); |
---|
| 2964 | ListDisplay=cell(numel(ListFiles),1); |
---|
| 2965 | for ilist=2:numel(ListDisplay)% suppress the first line '.' |
---|
| 2966 | ListDisplay{ilist-1}=ListFiles(ilist).name; |
---|
| 2967 | end |
---|
| 2968 | set(hObject,'Value',1) |
---|
| 2969 | set(hObject,'String',ListDisplay) |
---|
| 2970 | if strcmp(selectname,'..') |
---|
| 2971 | FullSelectName=fileparts(fileparts(FullSelectName)); |
---|
| 2972 | end |
---|
| 2973 | set(hObject,'UserData',FullSelectName) |
---|
| 2974 | hfig=get(hObject,'parent'); |
---|
| 2975 | htitlebox=findobj(hfig,'tag','titlebox'); |
---|
| 2976 | set(htitlebox,'String',FullSelectName) |
---|
| 2977 | elseif exist(FullSelectName,'file')%visualise the vel field if it exists |
---|
[784] | 2978 | FileInfo=get_file_info(FullSelectName); |
---|
[783] | 2979 | if strcmp(FileInfo.FileType,'txt') |
---|
[595] | 2980 | edit(FullSelectName) |
---|
[783] | 2981 | elseif strcmp(FileInfo.FileType,'xml') |
---|
[598] | 2982 | editxml(FullSelectName) |
---|
[595] | 2983 | else |
---|
| 2984 | uvmat(FullSelectName) |
---|
| 2985 | end |
---|
| 2986 | set(gcbo,'Value',1) |
---|
| 2987 | end |
---|
[591] | 2988 | |
---|
[595] | 2989 | |
---|
[591] | 2990 | %------------------------------------------------------------------------ |
---|
| 2991 | % launched by refreshing the status figure |
---|
[648] | 2992 | %------------------------------------------------------------------------ |
---|
[606] | 2993 | function refresh_GUI(hfig) |
---|
[648] | 2994 | |
---|
[595] | 2995 | htitlebox=findobj(hfig,'tag','titlebox'); |
---|
[591] | 2996 | hlist=findobj(hfig,'tag','list'); |
---|
[604] | 2997 | hseries=findobj(allchild(0),'tag','series'); |
---|
| 2998 | hstatus=findobj(hseries,'tag','status'); |
---|
| 2999 | StatusData=get(hstatus,'UserData'); |
---|
[595] | 3000 | OutputDir=get(htitlebox,'String'); |
---|
[602] | 3001 | if ischar(OutputDir),OutputDir={OutputDir};end |
---|
| 3002 | ListFiles=dir(OutputDir{1}); |
---|
[604] | 3003 | if numel(ListFiles)<1 |
---|
| 3004 | return |
---|
| 3005 | end |
---|
| 3006 | ListFiles(1)=[];%removes the first line ='.' |
---|
[591] | 3007 | ListDisplay=cell(numel(ListFiles),1); |
---|
[602] | 3008 | testrecent=0; |
---|
[604] | 3009 | datnum=zeros(numel(ListDisplay),1); |
---|
| 3010 | for ilist=1:numel(ListDisplay) |
---|
| 3011 | ListDisplay{ilist}=ListFiles(ilist).name; |
---|
[602] | 3012 | if ~ListFiles(ilist).isdir && isfield(ListFiles(ilist),'datenum') |
---|
| 3013 | datnum(ilist)=ListFiles(ilist).datenum;%only available in recent matlab versions |
---|
| 3014 | testrecent=1; |
---|
| 3015 | end |
---|
[591] | 3016 | end |
---|
| 3017 | set(hlist,'String',ListDisplay) |
---|
[602] | 3018 | |
---|
| 3019 | %% Look at date of creation |
---|
[604] | 3020 | ListDisplay=ListDisplay(datnum~=0); |
---|
[602] | 3021 | datnum=datnum(datnum~=0);%keep the non zero values corresponding to existing files |
---|
[606] | 3022 | NbOutputFile=[]; |
---|
[602] | 3023 | if isempty(datnum) |
---|
| 3024 | if testrecent |
---|
| 3025 | message='no civ result created yet'; |
---|
| 3026 | else |
---|
| 3027 | message=''; |
---|
| 3028 | end |
---|
| 3029 | else |
---|
| 3030 | [first,indfirst]=min(datnum); |
---|
| 3031 | [last,indlast]=max(datnum); |
---|
[604] | 3032 | NbOutputFile_str='?'; |
---|
| 3033 | NbOutputFile=[]; |
---|
| 3034 | if isfield(StatusData,'NbOutputFile') |
---|
| 3035 | NbOutputFile=StatusData.NbOutputFile; |
---|
| 3036 | NbOutputFile_str=num2str(NbOutputFile); |
---|
| 3037 | end |
---|
| 3038 | message={[num2str(numel(datnum)) ' file(s) done over ' NbOutputFile_str] ;['oldest modification: ' ListDisplay{indfirst} ' : ' datestr(first)];... |
---|
[602] | 3039 | ['latest modification: ' ListDisplay{indlast} ' : ' datestr(last)]}; |
---|
| 3040 | end |
---|
[604] | 3041 | set(htitlebox,'String', [OutputDir{1};message]) |
---|
| 3042 | |
---|
| 3043 | %% update the waitbar |
---|
[602] | 3044 | hwaitbar=findobj(hfig,'tag','waitbar'); |
---|
[604] | 3045 | if ~isempty(NbOutputFile) |
---|
| 3046 | BarPosition=get(hwaitbar,'Position'); |
---|
| 3047 | BarPosition(3)=0.9*numel(datnum)/NbOutputFile; |
---|
| 3048 | set(hwaitbar,'Position',BarPosition) |
---|
| 3049 | end |
---|
[602] | 3050 | |
---|
[635] | 3051 | %------------------------------------------------------------------------ |
---|
[591] | 3052 | % --- Executes on selection change in ActionExt. |
---|
[635] | 3053 | %------------------------------------------------------------------------ |
---|
[591] | 3054 | function ActionExt_Callback(hObject, eventdata, handles) |
---|
[635] | 3055 | |
---|
[591] | 3056 | ActionExtList=get(handles.ActionExt,'String'); |
---|
| 3057 | ActionExt=ActionExtList{get(handles.ActionExt,'Value')}; |
---|
| 3058 | ActionList=get(handles.ActionName,'String'); |
---|
| 3059 | ActionName=ActionList{get(handles.ActionName,'Value')}; |
---|
| 3060 | |
---|
| 3061 | function num_NbProcess_Callback(hObject, eventdata, handles) |
---|
| 3062 | |
---|
| 3063 | |
---|
| 3064 | function num_NbSlice_Callback(hObject, eventdata, handles) |
---|
| 3065 | NbSlice=str2num(get(handles.num_NbSlice,'String')); |
---|
| 3066 | set(handles.num_NbProcess,'String',num2str(NbSlice)) |
---|
[630] | 3067 | |
---|
| 3068 | %------------------------------------------------------------------------ |
---|
| 3069 | % --- set the visibility of relevant velocity type menus: |
---|
| 3070 | function menu=set_veltype_display(Civ,FileType) |
---|
| 3071 | %------------------------------------------------------------------------ |
---|
| 3072 | if ~exist('FileType','var') |
---|
| 3073 | FileType='civx'; |
---|
| 3074 | end |
---|
| 3075 | switch FileType |
---|
| 3076 | case 'civx' |
---|
| 3077 | menu={'civ1';'interp1';'filter1';'civ2';'interp2';'filter2'}; |
---|
| 3078 | if isequal(Civ,0) |
---|
| 3079 | imax=0; |
---|
| 3080 | elseif isequal(Civ,1) || isequal(Civ,2) |
---|
| 3081 | imax=1; |
---|
| 3082 | elseif isequal(Civ,3) |
---|
| 3083 | imax=3; |
---|
| 3084 | elseif isequal(Civ,4) || isequal(Civ,5) |
---|
| 3085 | imax=4; |
---|
| 3086 | elseif isequal(Civ,6) %patch2 |
---|
| 3087 | imax=6; |
---|
| 3088 | end |
---|
| 3089 | case 'civdata' |
---|
| 3090 | menu={'civ1';'filter1';'civ2';'filter2'}; |
---|
| 3091 | if isequal(Civ,0) |
---|
| 3092 | imax=0; |
---|
| 3093 | elseif isequal(Civ,1) || isequal(Civ,2) |
---|
| 3094 | imax=1; |
---|
| 3095 | elseif isequal(Civ,3) |
---|
| 3096 | imax=2; |
---|
| 3097 | elseif isequal(Civ,4) || isequal(Civ,5) |
---|
| 3098 | imax=3; |
---|
| 3099 | elseif isequal(Civ,6) %patch2 |
---|
| 3100 | imax=4; |
---|
| 3101 | end |
---|
| 3102 | end |
---|
| 3103 | menu=menu(1:imax); |
---|
[682] | 3104 | |
---|
| 3105 | |
---|
| 3106 | % --- Executes on mouse motion over figure - except title and menu. |
---|
| 3107 | function series_WindowButtonMotionFcn(hObject, eventdata, handles) |
---|
| 3108 | set(hObject,'Pointer','arrow'); |
---|
[764] | 3109 | |
---|
| 3110 | |
---|
| 3111 | % --- Executes on button press in SetPairs. |
---|
[772] | 3112 | function SetPairs_Callback(hObject, iview, handles) |
---|
[764] | 3113 | |
---|
[772] | 3114 | %% delete previous occurrence of 'set_pairs' |
---|
| 3115 | hfig=findobj(allchild(0),'Tag','set_pairs'); |
---|
| 3116 | if ~isempty(hfig) |
---|
| 3117 | delete(hfig) |
---|
| 3118 | end |
---|
| 3119 | |
---|
[764] | 3120 | %% create the GUI set_pairs |
---|
| 3121 | set(0,'Unit','points') |
---|
| 3122 | ScreenSize=get(0,'ScreenSize');% get the size of the screen, to put the fig on the upper right |
---|
[767] | 3123 | Width=220;% fig width in points (1/72 inch) |
---|
[764] | 3124 | Height=min(0.8*ScreenSize(4),300); |
---|
| 3125 | Left=ScreenSize(3)- Width-40; %right edge close to the right, with margin=40 |
---|
| 3126 | Bottom=ScreenSize(4)-Height-40; %put fig at top right |
---|
| 3127 | hfig=findobj(allchild(0),'Tag','set_slice'); |
---|
| 3128 | if ~isempty(hfig),delete(hfig), end; %delete existing version of the GUI |
---|
| 3129 | hfig=figure('name','set_pairs','tag','set_pairs','MenuBar','none','NumberTitle','off','Unit','points','Position',[Left,Bottom,Width,Height]); |
---|
| 3130 | BackgroundColor=get(hfig,'Color'); |
---|
| 3131 | SeriesData=get(handles.series,'UserData'); |
---|
[772] | 3132 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
| 3133 | PairString=get(handles.PairString,'Data'); |
---|
| 3134 | ListViewLines=find(cellfun('isempty',PairString)==0);%find list of non empty pairs |
---|
| 3135 | ListViewMenu=cell(numel(ListViewLines),1); |
---|
| 3136 | for ilist=1:numel(ListViewLines) |
---|
| 3137 | ListViewMenu{ilist}=num2str(ListViewLines(ilist)); |
---|
| 3138 | end |
---|
| 3139 | if isempty(iview) |
---|
| 3140 | ListViewValue=numel(ListViewLines);% we work by default on the pair option for the last line which requires pairs |
---|
| 3141 | iview=ListViewLines(end); |
---|
| 3142 | else |
---|
| 3143 | ListViewValue=find(ListViewLines==iview); |
---|
| 3144 | end |
---|
[777] | 3145 | ref_i=str2num(get(handles.num_first_i,'String')); |
---|
[851] | 3146 | ref_j=1;%default |
---|
| 3147 | if strcmp(get(handles.num_first_j,'String'),'Visible') |
---|
| 3148 | ref_j=str2num(get(handles.num_first_j,'String')); |
---|
| 3149 | end |
---|
[772] | 3150 | [ModeMenu,ModeValue]=update_mode(SeriesData.i1_series{iview},SeriesData.i2_series{iview},SeriesData.j2_series{iview}); |
---|
| 3151 | displ_pair=update_listpair(SeriesData.i1_series{iview},SeriesData.i2_series{iview},SeriesData.j1_series{iview},SeriesData.j2_series{iview},ModeMenu{ModeValue},... |
---|
[777] | 3152 | SeriesData.Time{iview},TimeUnit,ref_i,ref_j,SeriesData.FileInfo{iview}); |
---|
[764] | 3153 | % first raw of the GUI |
---|
[767] | 3154 | uicontrol('Style','text','Units','normalized', 'Position', [0.05 0.88 0.5 0.1],'BackgroundColor',BackgroundColor,... |
---|
[764] | 3155 | 'String','row to edit #','FontUnits','points','FontSize',12,'FontWeight','bold','ForegroundColor','blue','HorizontalAlignment','right');%title |
---|
[772] | 3156 | uicontrol('Style','popupmenu','Units','normalized', 'Position', [0.54 0.8 0.3 0.2],'BackgroundColor',[1 1 1],... |
---|
| 3157 | 'Callback',@(hObject,eventdata)ListView_Callback(hObject,eventdata),'String',ListViewMenu,'Value',ListViewValue,'FontUnits','points','FontSize',12,'FontWeight','bold',... |
---|
| 3158 | 'Tag','ListView','TooltipString','''ListView'':choice of the file series w for pair display'); |
---|
[764] | 3159 | % second raw of the GUI |
---|
[767] | 3160 | uicontrol('Style','text','Units','normalized', 'Position', [0.05 0.79 0.7 0.1],'BackgroundColor',BackgroundColor,... |
---|
[764] | 3161 | 'String','mode of index pairing:','FontUnits','points','FontSize',12,'FontWeight','bold','ForegroundColor','blue','HorizontalAlignment','left');%title |
---|
[772] | 3162 | uicontrol('Style','popupmenu','Units','normalized', 'Position', [0.05 0.62 0.9 0.2],'BackgroundColor',[1 1 1],... |
---|
| 3163 | 'Callback',@(hObject,eventdata)Mode_Callback(hObject,eventdata),'String',ModeMenu,'Value',ModeValue,'FontUnits','points','FontSize',12,'FontWeight','bold',... |
---|
| 3164 | 'Tag','Mode','TooltipString','''Mode'': choice of the image pair mode'); |
---|
[764] | 3165 | % third raw |
---|
[767] | 3166 | uicontrol('Style','text','Units','normalized', 'Position', [0.05 0.6 0.7 0.1],'BackgroundColor',BackgroundColor,... |
---|
[764] | 3167 | 'String','pair choice:','FontUnits','points','FontSize',12,'FontWeight','bold','ForegroundColor','blue','HorizontalAlignment','left');%title |
---|
[772] | 3168 | uicontrol('Style','listbox','Units','normalized', 'Position', [0.05 0.42 0.9 0.2],'BackgroundColor',[1 1 1],... |
---|
| 3169 | 'Callback',@(hObject,eventdata)ListPair_Callback(hObject,eventdata),'String',displ_pair,'Value',1,'FontUnits','points','FontSize',12,'FontWeight','bold',... |
---|
| 3170 | 'Tag','ListPair','TooltipString','''ListPair'': menu for selecting the image pair'); |
---|
[767] | 3171 | uicontrol('Style','text','Units','normalized', 'Position', [0.1 0.22 0.8 0.1],'BackgroundColor',BackgroundColor,... |
---|
| 3172 | 'String','ref_i ref_j','FontUnits','points','FontSize',12,'FontWeight','bold','ForegroundColor','blue','HorizontalAlignment','center');%title |
---|
[772] | 3173 | uicontrol('Style','edit','Units','normalized', 'Position', [0.15 0.17 0.3 0.08],'BackgroundColor',[1 1 1],... |
---|
[777] | 3174 | 'Callback',@(hObject,eventdata)num_ref_i_Callback(hObject,eventdata),'String',num2str(ref_i),'FontUnits','points','FontSize',12,'FontWeight','bold',... |
---|
[772] | 3175 | 'Tag','num_ref_i','TooltipString','''num_ref_i'': reference field index i used to display dt in ''list_pair_civ'''); |
---|
| 3176 | uicontrol('Style','edit','Units','normalized', 'Position', [0.55 0.17 0.3 0.08],'BackgroundColor',[1 1 1],... |
---|
[777] | 3177 | 'Callback',@(hObject,eventdata)num_ref_j_Callback(hObject,eventdata),'String',num2str(ref_j),'FontUnits','points','FontSize',12,'FontWeight','bold',... |
---|
[772] | 3178 | 'Tag','num_ref_j','TooltipString','''num_ref_j'': reference field index i used to display dt in ''list_pair_civ'''); |
---|
[764] | 3179 | % last raw of the GUI: pushbuttons |
---|
[772] | 3180 | % uicontrol('Style','pushbutton','Units','normalized', 'Position', [0.35 0.01 0.3 0.15],'BackgroundColor',[0 1 0],'String','OK','Callback',@(hObject,eventdata)OK_Callback(hObject,eventdata),... |
---|
| 3181 | % 'FontWeight','bold','FontUnits','points','FontSize',12,'TooltipString','''OK'': apply the output to the current field series in uvmat'); |
---|
[764] | 3182 | drawnow |
---|
| 3183 | |
---|
[772] | 3184 | %------------------------------------------------------------------------ |
---|
| 3185 | function ListView_Callback(hObject,eventdata) |
---|
| 3186 | Mode_Callback(hObject,eventdata) |
---|
| 3187 | |
---|
| 3188 | %------------------------------------------------------------------------ |
---|
| 3189 | function Mode_Callback(hObject,eventdata) |
---|
| 3190 | %% get input info |
---|
| 3191 | hseries=findobj(allchild(0),'tag','series');%handles of the GUI series |
---|
| 3192 | hhseries=guidata(hseries);%handles of the elements in the GUI series |
---|
| 3193 | TimeUnit=get(hhseries.TimeUnit,'String'); |
---|
[764] | 3194 | SeriesData=get(hseries,'UserData'); |
---|
[772] | 3195 | mode_list=get(hObject,'String'); |
---|
| 3196 | mode=mode_list{get(hObject,'Value')}; |
---|
[764] | 3197 | hListView=findobj(get(hObject,'parent'),'Tag','ListView'); |
---|
| 3198 | iview=get(hListView,'Value'); |
---|
[772] | 3199 | i1_series=SeriesData.i1_series{iview}; |
---|
| 3200 | i2_series=SeriesData.i2_series{iview}; |
---|
| 3201 | j1_series=SeriesData.j1_series{iview}; |
---|
| 3202 | j2_series=SeriesData.j2_series{iview}; |
---|
| 3203 | |
---|
| 3204 | %% enable j index visibility after the new choice |
---|
| 3205 | status_j='on';%default |
---|
| 3206 | if isempty(find(~cellfun(@isempty,SeriesData.j1_series), 1)); % case of empty j indices |
---|
| 3207 | status_j='off'; % no j index needed |
---|
| 3208 | elseif strcmp(get(handles.PairString,'Visible'),'on') |
---|
| 3209 | check_burst=cellfun(@isempty,regexp(PairString,'^j'));%=0 for burst case, 1 otherwise |
---|
| 3210 | if isempty(find(check_burst, 1))% if all pair string begins by j (burst) |
---|
| 3211 | status_j='off'; % no j index needed for bust case |
---|
| 3212 | end |
---|
[764] | 3213 | end |
---|
[772] | 3214 | enable_j(handles,status_j) % no j index needed |
---|
[764] | 3215 | |
---|
[772] | 3216 | %% get the reference indices for the time interval Dt |
---|
| 3217 | href_i=findobj(get(hObject,'parent'),'Tag','ref_i'); |
---|
| 3218 | ref_i=[];ref_j=[]; |
---|
| 3219 | if strcmp(get(href_i,'Visible'),'on') |
---|
| 3220 | ref_i=str2num(get(href_i,'String')); |
---|
| 3221 | end |
---|
| 3222 | if isempty(ref_i) |
---|
| 3223 | ref_i=1; |
---|
| 3224 | end |
---|
| 3225 | if isempty(ref_j) |
---|
| 3226 | ref_j=1; |
---|
| 3227 | end |
---|
| 3228 | |
---|
| 3229 | %% update the menu ListPair |
---|
[775] | 3230 | Menu=update_listpair(i1_series,i2_series,j1_series,j2_series,mode,SeriesData.Time{iview},TimeUnit,ref_i,ref_j,FileInfo); |
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[772] | 3231 | hlist_pairs=findobj(get(hObject,'parent'),'Tag','ListPair'); |
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| 3232 | set(hlist_pairs,'Value',1)% set the first choice by default in ListPair |
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| 3233 | set(hlist_pairs,'String',Menu)% set the menu in ListPair |
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| 3234 | ListPair_Callback(hlist_pairs,[])% apply the default choice in ListPair |
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| 3235 | |
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[764] | 3236 | %------------------------------------------------------------- |
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[772] | 3237 | % --- Executes on selection in ListPair. |
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| 3238 | function ListPair_Callback(hObject,eventdata) |
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[764] | 3239 | %------------------------------------------------------------ |
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| 3240 | list_pair=get(hObject,'String');%get the menu of image pairs |
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| 3241 | if isempty(list_pair) |
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| 3242 | string=''; |
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| 3243 | else |
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| 3244 | string=list_pair{get(hObject,'Value')}; |
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[772] | 3245 | % string=regexprep(string,',.*','');%removes time indication (after ',') |
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[764] | 3246 | end |
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| 3247 | hseries=findobj(allchild(0),'tag','series'); |
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| 3248 | hPairString=findobj(hseries,'tag','PairString'); |
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| 3249 | PairString=get(hPairString,'Data'); |
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| 3250 | hListView=findobj(get(hObject,'parent'),'Tag','ListView'); |
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| 3251 | iview=get(hListView,'Value'); |
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| 3252 | PairString{iview,1}=string; |
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| 3253 | % report the selected pair string to the table PairString |
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| 3254 | set(hPairString,'Data',PairString) |
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| 3255 | |
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[772] | 3256 | |
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[767] | 3257 | %------------------------------------------------------------------------ |
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| 3258 | function num_ref_i_Callback(hObject, eventdata) |
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| 3259 | %------------------------------------------------------------------------ |
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[772] | 3260 | Mode_Callback([],[]) |
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[767] | 3261 | |
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| 3262 | %------------------------------------------------------------------------ |
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| 3263 | function num_ref_j_Callback(hObject, eventdata) |
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| 3264 | %------------------------------------------------------------------------ |
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[772] | 3265 | Mode_Callback([],[]) |
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[842] | 3266 | |
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[851] | 3267 | %------------------------------------------------------------------------ |
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[842] | 3268 | % --- Executes on button press in ClearLine. |
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[851] | 3269 | %------------------------------------------------------------------------ |
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[842] | 3270 | function ClearLine_Callback(hObject, eventdata, handles) |
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| 3271 | InputTable=get(handles.InputTable,'Data'); |
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[851] | 3272 | iline=str2double(get(handles.InputLine,'String')); |
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| 3273 | if size(InputTable,1)>1 |
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| 3274 | InputTable(iline,:)=[];% suppress the current line if not the first |
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| 3275 | set(handles.InputTable,'Data',InputTable); |
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| 3276 | end |
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