1 | %'series': master function associated to the GUI series.m for analysis field series |
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2 | %------------------------------------------------------------------------ |
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3 | % function varargout = series(varargin) |
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4 | % associated with the GUI series.fig |
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5 | % |
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6 | %INPUT |
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7 | % param: structure with input parameters (link with the GUI uvmat) |
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8 | % .menu_coord_str: string for the CoordType (menu for coordinate transforms) |
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9 | % .menu_coord_val: value for CoordType (menu for coordinate transforms) |
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10 | % .FileName: input file name |
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11 | % .FileName_1: second input file name |
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12 | % .list_field: menu of input fields |
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13 | % .index_fields: chosen index |
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14 | % .civ1=0 or 1, .interp1, ... : input civ field type |
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15 | % |
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16 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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17 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. |
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18 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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19 | % This file is part of the toolbox UVMAT. |
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20 | % |
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21 | % UVMAT is free software; you can redistribute it and/or modify |
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22 | % it under the terms of the GNU General Public License as published by |
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23 | % the Free Software Foundation; either version 2 of the License, or |
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24 | % (at your option) any later version. |
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25 | % |
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26 | % UVMAT is distributed in the hope that it will be useful, |
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27 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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28 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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29 | % GNU General Public License (file UVMAT/COPYING.txt) for more details. |
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30 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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31 | |
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32 | function varargout = series(varargin) |
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33 | |
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34 | % Begin initialization code - DO NOT EDIT |
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35 | gui_Singleton = 1; |
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36 | gui_State = struct('gui_Name', mfilename, ... |
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37 | 'gui_Singleton', gui_Singleton, ... |
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38 | 'gui_OpeningFcn', @series_OpeningFcn, ... |
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39 | 'gui_OutputFcn', @series_OutputFcn, ... |
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40 | 'gui_LayoutFcn', [] , ... |
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41 | 'gui_Callback', []); |
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42 | if nargin && ischar(varargin{1}) |
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43 | gui_State.gui_Callback = str2func(varargin{1}); |
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44 | end |
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45 | |
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46 | if nargout |
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47 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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48 | else |
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49 | gui_mainfcn(gui_State, varargin{:}); |
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50 | end |
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51 | % End initialization code - DO NOT EDIT |
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52 | |
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53 | %-------------------------------------------------------------------------- |
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54 | % --- Executes just before series is made visible. |
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55 | %-------------------------------------------------------------------------- |
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56 | function series_OpeningFcn(hObject, eventdata, handles,param) |
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57 | |
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58 | % Choose default command line output for series |
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59 | handles.output = hObject; |
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60 | % Update handles structure |
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61 | guidata(hObject, handles); |
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62 | %default initial parameters |
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63 | |
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64 | %load the list of previously browsed files in menus Open and Open_1 |
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65 | dir_perso=prefdir; |
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66 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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67 | if exist(profil_perso,'file') |
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68 | h=load (profil_perso); |
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69 | if isfield(h,'MenuFile_1') |
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70 | set(handles.MenuFile_1,'Label',h.MenuFile_1); |
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71 | set(handles.MenuFile_insert_1,'Label',h.MenuFile_1); |
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72 | end |
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73 | if isfield(h,'MenuFile_1') |
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74 | set(handles.MenuFile_2,'Label',h.MenuFile_2); |
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75 | set(handles.MenuFile_insert_2,'Label',h.MenuFile_2); |
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76 | end |
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77 | if isfield(h,'MenuFile_1') |
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78 | set(handles.MenuFile_3,'Label',h.MenuFile_3); |
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79 | set(handles.MenuFile_insert_3,'Label',h.MenuFile_3); |
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80 | end |
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81 | if isfield(h,'MenuFile_1') |
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82 | set(handles.MenuFile_4,'Label',h.MenuFile_4); |
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83 | set(handles.MenuFile_insert_4,'Label',h.MenuFile_4); |
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84 | end |
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85 | if isfield(h,'MenuFile_1') |
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86 | set(handles.MenuFile_5,'Label',h.MenuFile_5); |
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87 | set(handles.MenuFile_insert_5,'Label',h.MenuFile_5); |
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88 | end |
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89 | end |
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90 | |
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91 | %check default input data |
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92 | if ~exist('param','var') |
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93 | param=[]; %default |
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94 | end |
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95 | |
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96 | %file name and browser initialisation |
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97 | if isfield(param,'menu_coord_str') |
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98 | set(handles.CoordType,'String',param.menu_coord_str) |
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99 | end |
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100 | if isfield(param,'menu_coord_val') |
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101 | set(handles.CoordType,'Value',param.menu_coord_val); |
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102 | else |
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103 | set(handles.CoordType,'Value',1);%default |
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104 | end |
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105 | |
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106 | if isfield(param,'FileName') |
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107 | if isfield(param,'FileName_1') |
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108 | update_file(hObject, eventdata, handles,param.FileName_1,0) |
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109 | update_file(hObject, eventdata, handles,param.FileName,1) |
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110 | else |
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111 | update_file(hObject, eventdata, handles,param.FileName,0) |
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112 | end |
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113 | end |
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114 | |
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115 | %fields input initialisation |
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116 | if isfield(param,'list_fields')&& isfield(param,'index_fields') &&~isempty(param.list_fields) &&~isempty(param.index_fields) |
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117 | set(handles.FieldMenu,'String',param.list_fields);% list menu fields |
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118 | set(handles.FieldMenu,'Value',param.index_fields);% selected string index |
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119 | FieldCell{1}=param.list_fields{param.index_fields}; |
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120 | end |
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121 | if isfield(param,'civ1')&& islogical(param.civ1) && isfield(param,'civ2')&& islogical(param.civ2)&... |
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122 | isfield(param,'interp1')&& islogical(param.interp1)&&isfield(param,'interp2')&& islogical(param.interp2)&... |
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123 | isfield(param,'filter1')&& islogical(param.filter1)&&isfield(param,'filter2')&& islogical(param.filter2) |
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124 | set(handles.civ1,'Value',param.civ1); |
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125 | set(handles.civ2,'Value',param.civ1); |
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126 | set(handles.interp1,'Value',param.interp1); |
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127 | set(handles.interp2,'Value',param.interp2); |
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128 | set(handles.filter1,'Value',param.filter1); |
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129 | set(handles.filter2,'Value',param.filter2); |
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130 | end |
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131 | %set(hObject,'UserData', SeriesData) |
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132 | set(hObject,'WindowButtonUpFcn',{@mouse_up_gui,handles}) |
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133 | NomType_Callback(hObject, eventdata, handles) |
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134 | %mode_Callback(hObject, eventdata, handles) |
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135 | |
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136 | %loads the information stored in prefdir to initiate the browser and the list of functions |
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137 | menu_str={'check_files';'aver_stat';'time_series';'merge_proj';'clean_civ_cmx'}; |
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138 | |
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139 | % menu_str=get(handles.ACTION,'String');%list of functions included in 'series.m' |
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140 | |
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141 | %remove from the list the last option 'more...' |
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142 | [path_series,name,ext]=fileparts(which('series')); |
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143 | path_series=fullfile(path_series,'/series');%path of the function 'series' |
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144 | |
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145 | for ilist=1:length(menu_str) |
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146 | fct_path{ilist,1}=path_series;%paths of the fuctions buil-in in 'series.m' |
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147 | end |
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148 | dir_perso=prefdir; |
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149 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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150 | if exist(profil_perso,'file') |
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151 | h=load (profil_perso); |
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152 | if isfield(h,'series_fct') && iscell(h.series_fct) |
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153 | for ilist=1:length(h.series_fct) |
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154 | [path,file]=fileparts(h.series_fct{ilist}); |
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155 | fct_path=[fct_path; {path}];%concatene the list of paths |
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156 | menu_str=[menu_str; {file}]; |
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157 | end |
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158 | end |
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159 | end |
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160 | |
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161 | menu_str=[menu_str;{'more...'}]; |
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162 | set(handles.ACTION,'String',menu_str) |
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163 | set(handles.ACTION,'UserData',fct_path)% store the list of path in UserData of ACTION |
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164 | |
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165 | % display the GUI for the default action 'check_files' |
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166 | ACTION_Callback(hObject, eventdata, handles) |
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167 | |
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168 | %-------------------------------------------------------------- |
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169 | % --- Outputs from this function are returned to the command line. |
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170 | %----------------------------------------------------------------- |
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171 | function varargout = series_OutputFcn(hObject, eventdata, handles) |
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172 | % varargout cell array for returning output args (see VARARGOUT); |
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173 | % hObject handle to figure |
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174 | % eventdata reserved - to be defined in a future version of MATLAB |
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175 | % handles structure with handles and user data (see GUIDATA) |
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176 | % Get default command line output from handles structure |
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177 | varargout{1} = handles.output; |
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178 | |
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179 | |
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180 | % -------------------------------------------------------------------- |
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181 | function MenuBrowse_Callback(hObject, eventdata, handles) |
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182 | |
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183 | RootPathCell=get(handles.RootPath,'String'); |
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184 | SubDirCell=get(handles.SubDir,'String'); |
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185 | RootFileCell=get(handles.RootFile,'String'); |
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186 | oldfile=''; %default |
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187 | if isempty(RootPathCell)|isequal(RootPathCell,{''})%loads the previously stored file name and set it as default in the file_input box |
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188 | dir_perso=prefdir; |
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189 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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190 | if exist(profil_perso,'file') |
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191 | h=load (profil_perso); |
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192 | if isfield(h,'filebase')&ischar(h.filebase) |
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193 | oldfile=h.filebase; |
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194 | end |
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195 | if isfield(h,'RootPath')&ischar(h.RootPath) |
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196 | oldfile=h.RootPath; |
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197 | end |
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198 | end |
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199 | else |
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200 | oldfile=fullfile(RootPathCell{1},SubDirCell{1},RootFileCell{1}); |
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201 | end |
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202 | [FileName, PathName, filterindex] = uigetfile( ... |
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203 | {'*.xml;*.xls;*.png;*.tif;*.avi;*.AVI;*.nc', ' (*.xml,*.xls, *.png,*.tif, *.avi,*.nc)'; |
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204 | '*.xml', '.xml files '; ... |
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205 | '*.xls', '.xls files '; ... |
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206 | '*.png','.png image files'; ... |
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207 | '*.tif','.tif image files'; ... |
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208 | '*.avi;*.AVI','.avi movie files'; ... |
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209 | '*.nc','.netcdf files'; ... |
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210 | '*.*', 'All Files (*.*)'}, ... |
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211 | 'Pick a file',oldfile); |
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212 | fileinput=[PathName FileName];%complete file name |
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213 | testblank=findstr(fileinput,' ');%look for blanks |
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214 | if ~isempty(testblank) |
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215 | errordlg('forbidden input file name: contain blanks') |
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216 | return |
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217 | end |
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218 | sizf=size(fileinput); |
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219 | if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end |
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220 | [path,name,ext]=fileparts(fileinput); |
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221 | SeriesData=[];%dfault |
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222 | if isequal(ext,'.xml') |
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223 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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224 | elseif isequal(ext,'.xls') |
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225 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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226 | else |
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227 | update_file(hObject, eventdata, handles,fileinput,0) |
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228 | %update list of recent files in the menubar |
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229 | MenuFile_1=fileinput; |
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230 | MenuFile_2=get(handles.MenuFile_1,'Label'); |
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231 | MenuFile_3=get(handles.MenuFile_2,'Label'); |
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232 | MenuFile_4=get(handles.MenuFile_3,'Label'); |
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233 | MenuFile_5=get(handles.MenuFile_4,'Label'); |
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234 | set(handles.MenuFile_1,'Label',MenuFile_1) |
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235 | set(handles.MenuFile_2,'Label',MenuFile_2) |
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236 | set(handles.MenuFile_3,'Label',MenuFile_3) |
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237 | set(handles.MenuFile_4,'Label',MenuFile_4) |
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238 | set(handles.MenuFile_5,'Label',MenuFile_5) |
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239 | set(handles.MenuFile_insert_1,'Label',MenuFile_1) |
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240 | set(handles.MenuFile_insert_2,'Label',MenuFile_2) |
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241 | set(handles.MenuFile_insert_3,'Label',MenuFile_3) |
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242 | set(handles.MenuFile_insert_4,'Label',MenuFile_4) |
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243 | set(handles.MenuFile_insert_5,'Label',MenuFile_5) |
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244 | dir_perso=prefdir; |
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245 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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246 | if exist(profil_perso,'file') |
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247 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-append'); %store the file names for future opening of uvmat |
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248 | else |
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249 | txt=ver; |
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250 | Release=txt(1).Release; |
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251 | relnumb=str2num(Release(3:4)); |
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252 | if relnumb >= 14 |
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253 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-V6'); %store the file names for future opening of uvmat |
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254 | else |
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255 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5'); %store the file names for future opening of uvmat |
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256 | end |
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257 | end |
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258 | end |
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259 | % set(hseries,'UserData',SeriesData); |
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260 | % RootFile_Callback(hObject, eventdata, handles); |
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261 | % FileExt_Callback(hObject, eventdata, handles); |
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262 | % NomType_Callback(hObject, eventdata, handles) |
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263 | % mode_Callback(hObject, eventdata, handles) |
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264 | |
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265 | |
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266 | % -------------------------------------------------------------------- |
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267 | function MenuFile_1_Callback(hObject, eventdata, handles) |
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268 | fileinput=get(handles.MenuFile_1,'Label'); |
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269 | update_file(hObject, eventdata, handles,fileinput,0) |
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270 | |
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271 | % -------------------------------------------------------------------- |
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272 | function MenuFile_2_Callback(hObject, eventdata, handles) |
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273 | fileinput=get(handles.MenuFile_2,'Label'); |
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274 | update_file(hObject, eventdata, handles,fileinput,0) |
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275 | |
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276 | % -------------------------------------------------------------------- |
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277 | function MenuFile_3_Callback(hObject, eventdata, handles) |
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278 | fileinput=get(handles.MenuFile_3,'Label'); |
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279 | update_file(hObject, eventdata, handles,fileinput,0) |
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280 | |
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281 | % -------------------------------------------------------------------- |
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282 | function MenuFile_4_Callback(hObject, eventdata, handles) |
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283 | fileinput=get(handles.MenuFile_4,'Label'); |
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284 | update_file(hObject, eventdata, handles,fileinput,0) |
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285 | |
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286 | % -------------------------------------------------------------------- |
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287 | function MenuFile_5_Callback(hObject, eventdata, handles) |
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288 | fileinput=get(handles.MenuFile_5,'Label'); |
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289 | update_file(hObject, eventdata, handles,fileinput,0) |
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290 | |
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291 | % -------------------------------------------------------------------- |
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292 | function MenuBrowse_insert_Callback(hObject, eventdata, handles) |
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293 | |
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294 | %hseries=get(handles.browse_root,'parent'); |
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295 | RootPathCell=get(handles.RootPath,'String'); |
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296 | % SubDirCell=get(handles.SubDir,'String'); |
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297 | RootFileCell=get(handles.RootFile,'String'); |
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298 | oldfile=''; %default |
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299 | if isempty(RootPathCell)|isequal(RootPathCell,{''})%loads the previously stored file name and set it as default in the file_input box |
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300 | dir_perso=prefdir; |
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301 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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302 | if exist(profil_perso,'file') |
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303 | h=load (profil_perso); |
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304 | if isfield(h,'filebase')&ischar(h.filebase) |
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305 | oldfile=h.filebase; |
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306 | end |
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307 | if isfield(h,'RootPath')&ischar(h.RootPath) |
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308 | oldfile=h.RootPath; |
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309 | end |
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310 | end |
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311 | else |
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312 | oldfile=fullfile(RootPathCell{1},RootFileCell{1}); |
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313 | end |
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314 | [FileName, PathName, filterindex] = uigetfile( ... |
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315 | {'*.xml;*.xls;*.png;*.avi;*.AVI;*.nc', ' (*.xml,*.xls, *.png, *.avi,*.nc)'; |
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316 | '*.xml', '.xml files '; ... |
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317 | '*.xls', '.xls files '; ... |
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318 | '*.png','.png image files'; ... |
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319 | '*.avi;*.AVI','.avi movie files'; ... |
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320 | '*.nc','.netcdf files'; ... |
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321 | '*.*', 'All Files (*.*)'}, ... |
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322 | 'Pick a file',oldfile); |
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323 | fileinput=[PathName FileName];%complete file name |
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324 | testblank=findstr(fileinput,' ');%look for blanks |
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325 | if ~isempty(testblank) |
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326 | errordlg('forbidden input file name: contain blanks') |
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327 | return |
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328 | end |
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329 | sizf=size(fileinput); |
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330 | if (~ischar(fileinput)|~isequal(sizf(1),1)),return;end |
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331 | [path,name,ext]=fileparts(fileinput); |
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332 | SeriesData=[];%dfault |
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333 | if isequal(ext,'.xml') |
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334 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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335 | elseif isequal(ext,'.xls') |
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336 | errordlg('input file type not implemented')%A Faire: ouvrir le fichier pour naviguer |
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337 | else |
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338 | update_file(hObject, eventdata, handles,fileinput,1) |
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339 | %update list of recent files in the menubar |
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340 | MenuFile_1=fileinput; |
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341 | MenuFile_2=get(handles.MenuFile_1,'Label'); |
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342 | MenuFile_3=get(handles.MenuFile_2,'Label'); |
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343 | MenuFile_4=get(handles.MenuFile_3,'Label'); |
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344 | MenuFile_5=get(handles.MenuFile_4,'Label'); |
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345 | set(handles.MenuFile_1,'Label',MenuFile_1) |
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346 | set(handles.MenuFile_2,'Label',MenuFile_2) |
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347 | set(handles.MenuFile_3,'Label',MenuFile_3) |
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348 | set(handles.MenuFile_4,'Label',MenuFile_4) |
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349 | set(handles.MenuFile_5,'Label',MenuFile_5) |
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350 | set(handles.MenuFile_insert_1,'Label',MenuFile_1) |
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351 | set(handles.MenuFile_insert_2,'Label',MenuFile_2) |
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352 | set(handles.MenuFile_insert_3,'Label',MenuFile_3) |
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353 | set(handles.MenuFile_insert_4,'Label',MenuFile_4) |
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354 | set(handles.MenuFile_insert_5,'Label',MenuFile_5) |
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355 | dir_perso=prefdir; |
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356 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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357 | if exist(profil_perso,'file') |
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358 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-append'); %store the file names for future opening of uvmat |
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359 | else |
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360 | txt=ver; |
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361 | Release=txt(1).Release; |
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362 | relnumb=str2num(Release(3:4)); |
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363 | if relnumb >= 14 |
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364 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-V6'); %store the file names for future opening of uvmat |
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365 | else |
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366 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5'); %store the file names for future opening of uvmat |
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367 | end |
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368 | end |
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369 | end |
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370 | %------------------------------------------------ |
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371 | |
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372 | % -------------------------------------------------------------------- |
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373 | function MenuFile_insert_1_Callback(hObject, eventdata, handles) |
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374 | fileinput=get(handles.MenuFile_insert_1,'Label'); |
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375 | update_file(hObject, eventdata, handles,fileinput,1) |
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376 | |
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377 | % -------------------------------------------------------------------- |
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378 | function MenuFile_insert_2_Callback(hObject, eventdata, handles) |
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379 | fileinput=get(handles.MenuFile_insert_2,'Label'); |
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380 | update_file(hObject, eventdata, handles,fileinput,1) |
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381 | |
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382 | % -------------------------------------------------------------------- |
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383 | function MenuFile_insert_3_Callback(hObject, eventdata, handles) |
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384 | fileinput=get(handles.MenuFile_insert_3,'Label'); |
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385 | update_file(hObject, eventdata, handles,fileinput,1) |
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386 | |
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387 | % -------------------------------------------------------------------- |
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388 | function MenuFile_insert_4_Callback(hObject, eventdata, handles) |
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389 | fileinput=get(handles.MenuFile_insert_4,'Label'); |
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390 | update_file(hObject, eventdata, handles,fileinput,1) |
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391 | |
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392 | % -------------------------------------------------------------------- |
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393 | function MenuFile_insert_5_Callback(hObject, eventdata, handles) |
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394 | fileinput=get(handles.MenuFile_insert_5,'Label'); |
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395 | update_file(hObject, eventdata, handles,fileinput,1) |
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396 | |
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397 | % -------------------------------------------------------------------- |
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398 | % refresh the GUI data after introduction of a new file series |
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399 | function update_file(hObject, eventdata, handles,fileinput,addtest) |
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400 | hseries=get(handles.RootPath,'parent'); |
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401 | % refresh input root name, indices, file extension and nomenclature |
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402 | [RootPath,RootFile,field_count,str2,str_a,str_b,FileExt,NomType,SubDir]=name2display(fileinput); |
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403 | %check for movie image files |
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404 | if ~isempty(imformats(FileExt(2:end))) |
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405 | imainfo=imfinfo(fileinput); |
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406 | if length(imainfo) >1 %case of image with multiple frames |
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407 | NomType='*'; |
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408 | [RootPath,RootFile]=fileparts(fileinput); |
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409 | end |
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410 | end |
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411 | NcType='none';%default |
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412 | if isequal(FileExt,'.nc') |
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413 | Data=nc2struct(fileinput,[]); |
---|
414 | if isfield(Data,'absolut_time_T0') |
---|
415 | NcType='civx'; % test for civx velocity fields |
---|
416 | end |
---|
417 | end |
---|
418 | |
---|
419 | set(handles.RootPath,'Value',1) |
---|
420 | set(handles.SubDir,'Value',1) |
---|
421 | set(handles.RootFile,'Value',1) |
---|
422 | set(handles.NomType,'Value',1) |
---|
423 | set(handles.FileExt,'Value',1) |
---|
424 | set(handles.nb_field,'Value',1) |
---|
425 | set(handles.nb_field2,'Value',1) |
---|
426 | if addtest |
---|
427 | SeriesData=get(hseries,'UserData'); |
---|
428 | SeriesData.displ_num=[0 0 0 0;SeriesData.displ_num]; |
---|
429 | SeriesData.CurrentInputFile_1=SeriesData.CurrentInputFile; |
---|
430 | RootPathCell=[{RootPath}; get(handles.RootPath,'String')] ; |
---|
431 | SubDirCell=[{SubDir}; get(handles.SubDir,'String')]; |
---|
432 | RootFileCell=[{RootFile}; get(handles.RootFile,'String')]; |
---|
433 | NomTypeCell=[{NomType}; SeriesData.NomType]; |
---|
434 | FileExtCell=[{FileExt}; get(handles.FileExt,'String')]; |
---|
435 | NcTypeCell=[{NcType};SeriesData.NcType]; |
---|
436 | set(handles.NomType,'String',[{};get(handles.NomType,'String')]) |
---|
437 | else |
---|
438 | SeriesData=[];%re-initialisation |
---|
439 | SeriesData.displ_num=[0 0 0 0]; |
---|
440 | RootPathCell={RootPath}; |
---|
441 | SubDirCell={SubDir}; |
---|
442 | RootFileCell={RootFile}; |
---|
443 | NomTypeCell={NomType}; |
---|
444 | FileExtCell={FileExt}; |
---|
445 | NcTypeCell={NcType}; |
---|
446 | end |
---|
447 | |
---|
448 | SeriesData.NomType=NomTypeCell; |
---|
449 | SeriesData.NcType=NcTypeCell; |
---|
450 | SeriesData.CurrentInputFile=fileinput; |
---|
451 | set(handles.RootPath,'String',RootPathCell); |
---|
452 | set(handles.SubDir,'String',SubDirCell); |
---|
453 | set(handles.RootFile,'String',RootFileCell); |
---|
454 | set(handles.NomType,'String',NomTypeCell); |
---|
455 | set(handles.FileExt,'String',FileExtCell); |
---|
456 | |
---|
457 | %determine field indices |
---|
458 | ref_i=1; %default ref_i is a reference frame index used to find existing pairs from PIV |
---|
459 | if ~isempty(str2num(field_count)) |
---|
460 | ref_i=str2num(field_count); |
---|
461 | if ~isempty(str2num(str2)) |
---|
462 | ref_i=floor((ref_i+str2num(str2))/2);% reference image number corresponding to the file |
---|
463 | SeriesData.browse_Di=str2num(str2)-str2num(field_count); |
---|
464 | end |
---|
465 | end |
---|
466 | set(handles.ref_i,'String',num2str(ref_i)); |
---|
467 | set(handles.first_i,'String',num2str(ref_i)); |
---|
468 | set(handles.last_i,'String',num2str(ref_i)); |
---|
469 | ref_j=1; %default ref_j is a reference frame index used to find existing pairs from PIV |
---|
470 | if ~isempty(str2num(str_a)) |
---|
471 | ref_j=str2num(str_a); |
---|
472 | if ~isempty(str2num(str_b)) |
---|
473 | ref_j=floor((str2num(str_a)+str2num(str_b))/2); |
---|
474 | SeriesData.browse_Dj=str2num(str_b)-str2num(str_a); |
---|
475 | end |
---|
476 | end |
---|
477 | set(handles.ref_j,'String',num2str(ref_j)); |
---|
478 | set(handles.first_j,'String',num2str(ref_j)) |
---|
479 | set(handles.last_j,'String',num2str(ref_j)); |
---|
480 | %set(hseries,'UserData',SeriesData); |
---|
481 | |
---|
482 | %enable other menus and uicontrols |
---|
483 | set(handles.MenuOpen_insert,'Enable','on') |
---|
484 | set(handles.MenuFile_insert_1,'Enable','on') |
---|
485 | set(handles.MenuFile_insert_2,'Enable','on') |
---|
486 | set(handles.MenuFile_insert_3,'Enable','on') |
---|
487 | set(handles.MenuFile_insert_4,'Enable','on') |
---|
488 | set(handles.MenuFile_insert_5,'Enable','on') |
---|
489 | set(handles.RUN, 'Enable','On') |
---|
490 | set(handles.RUN,'BackgroundColor',[1 0 0])% set RUN button to red |
---|
491 | set(handles.RootPath,'BackgroundColor',[1 1 0]) % set RootPath edit box to yellow |
---|
492 | drawnow |
---|
493 | |
---|
494 | % hseries=get(handles.RootFile,'parent'); |
---|
495 | % SeriesData=get(hseries,'UserData');%read information set by the browser |
---|
496 | % ext_ima_read=[]; |
---|
497 | % field_count=1;%default |
---|
498 | % pxcmx=1; |
---|
499 | % pxcmy=1; |
---|
500 | TimeUnit=''; %default |
---|
501 | % CoordUnit='';%default |
---|
502 | time=[];%default |
---|
503 | GeometryCalib=[];%default |
---|
504 | nb_field=[];%default |
---|
505 | nb_field2=[];%default |
---|
506 | % Heading=[]; |
---|
507 | % [PD,Device]=fileparts(RootPathCell{1}); |
---|
508 | SeriesData.PathCampaign=get(handles.PathCampaign,'String'); |
---|
509 | |
---|
510 | % read timing and total frame number from the current file (movie files) !! may be overrid by xml file |
---|
511 | %icell=length(RootPathCell); |
---|
512 | FileBase=fullfile(RootPath,RootFile); |
---|
513 | |
---|
514 | % nb_field{icell,1}='?';%default |
---|
515 | % nb_field2{icell,1}='?';%default |
---|
516 | testima=0; %test for image input |
---|
517 | if isequal(lower(FileExt),'.avi') %.avi file |
---|
518 | testima=1; |
---|
519 | info=aviinfo([FileBase FileExt]); |
---|
520 | time=[0:1/info.FramesPerSecond:(info.NumFrames-1)/info.FramesPerSecond]'; |
---|
521 | nb_field=info.NumFrames; |
---|
522 | nb_field2=1; |
---|
523 | elseif ~isempty(imformats(FileExt(2:end))) |
---|
524 | testima=1; |
---|
525 | if isequal(NomType,'*')% multi-frame image |
---|
526 | imainfo=imfinfo([FileBase FileExt]); |
---|
527 | if length(imainfo) >1 %case of image with multiple frames |
---|
528 | nb_field=length(imainfo); |
---|
529 | nb_field2=1; |
---|
530 | end |
---|
531 | end |
---|
532 | elseif isequal(FileExt,'.vol') |
---|
533 | testima=1; |
---|
534 | end |
---|
535 | |
---|
536 | % enable field and veltype menus |
---|
537 | testfield=isequal(get(handles.FieldMenu,'enable'),'on'); |
---|
538 | testfield_1=isequal(get(handles.FieldMenu_1,'enable'),'on'); |
---|
539 | testveltype=isequal(get(handles.VelTypeMenu,'enable'),'on'); |
---|
540 | testveltype_1=isequal(get(handles.VelTypeMenu_1,'enable'),'on'); |
---|
541 | testtransform=isequal(get(handles.CoordType,'Enable'),'on'); |
---|
542 | testnc=0; |
---|
543 | testnc_1=0; |
---|
544 | testcivx=0; |
---|
545 | testcivx_1=0; |
---|
546 | if length(FileExtCell)==1 || length(FileExtCell)>2 |
---|
547 | for iview=1:length(FileExtCell) |
---|
548 | if isequal(FileExtCell{iview},'.nc') |
---|
549 | testnc=1; |
---|
550 | end |
---|
551 | if isequal(NcTypeCell{iview},'civx') |
---|
552 | testcivx=1; |
---|
553 | end |
---|
554 | end |
---|
555 | elseif length(FileExtCell)==2 |
---|
556 | testnc=isequal(FileExtCell{1},'.nc'); |
---|
557 | testnc_1=isequal(FileExtCell{2},'.nc'); |
---|
558 | testcivx=isequal(NcTypeCell{1},'civx'); |
---|
559 | testcivx_1=isequal(NcTypeCell{2},'civx'); |
---|
560 | end |
---|
561 | if testfield && testnc |
---|
562 | view_FieldMenu(handles,'on') |
---|
563 | if testcivx |
---|
564 | menustr=get(handles.FieldMenu,'String'); |
---|
565 | if isequal(menustr,{'get_field...'}) |
---|
566 | set(handles.FieldMenu,'String',{'get_field...';'velocity';'vort';'div';'more...'}) |
---|
567 | end |
---|
568 | else |
---|
569 | set(handles.FieldMenu,'Value',1) |
---|
570 | set(handles.FieldMenu,'String',{'get_field...'}) |
---|
571 | end |
---|
572 | else |
---|
573 | view_FieldMenu(handles,'off') |
---|
574 | end |
---|
575 | if testfield_1 && testnc_1 |
---|
576 | view_FieldMenu_1(handles,'on') |
---|
577 | if testcivx_1 |
---|
578 | menustr=get(handles.FieldMenu_1,'String'); |
---|
579 | if isequal(menustr,{'get_field...'}) |
---|
580 | set(handles.FieldMenu_1,'String',{'get_field...';'velocity';'vort';'div';'more...'}) |
---|
581 | end |
---|
582 | else |
---|
583 | set(handles.FieldMenu_1,'Value',1) |
---|
584 | set(handles.FieldMenu_1,'String',{'get_field...'}) |
---|
585 | end |
---|
586 | else |
---|
587 | view_FieldMenu_1(handles,'off') |
---|
588 | end |
---|
589 | if testveltype && testcivx |
---|
590 | set(handles.VelTypeMenu,'Visible','on') |
---|
591 | set(handles.VelType_text,'Visible','on'); |
---|
592 | else |
---|
593 | set(handles.VelTypeMenu,'Visible','off') |
---|
594 | set(handles.VelType_text,'Visible','off'); |
---|
595 | end |
---|
596 | if testveltype_1 && testcivx_1 |
---|
597 | set(handles.VelTypeMenu_1,'Visible','on') |
---|
598 | set(handles.VelType_text_1,'Visible','on'); |
---|
599 | else |
---|
600 | set(handles.VelTypeMenu_1,'Visible','off') |
---|
601 | set(handles.VelType_text_1,'Visible','off'); |
---|
602 | end |
---|
603 | if testtransform && (testcivx || testima) |
---|
604 | view_TRANSFORM(handles,'on') |
---|
605 | else |
---|
606 | view_TRANSFORM(handles,'off') |
---|
607 | end |
---|
608 | if ~isequal(FileExt,'.nc') && ~isequal(FileExt,'.cdf') && ~testima |
---|
609 | msgbox_uvmat('ERROR',['invalid input file extension ' FileExt]) |
---|
610 | return |
---|
611 | end |
---|
612 | |
---|
613 | %%%%%%%% read image documentation file if found%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
614 | %look for the file existence |
---|
615 | ext_imadoc=''; |
---|
616 | if isequal(FileExt,'.xml')||isequal(FileExt,'.civ') |
---|
617 | ext_imadoc=FileExt; |
---|
618 | elseif exist([FileBase '.xml'],'file') |
---|
619 | ext_imadoc='.xml'; |
---|
620 | elseif exist([FileBase '.civ'],'file') |
---|
621 | ext_imadoc='.civ'; |
---|
622 | end |
---|
623 | %read the ImaDoc file |
---|
624 | % mode=''; %default |
---|
625 | % testheading=0; |
---|
626 | XmlData=[]; |
---|
627 | NbSlice_calib={}; |
---|
628 | if isequal(ext_imadoc,'.xml') |
---|
629 | [XmlData,warntext]=imadoc2struct([FileBase '.xml']); |
---|
630 | if isfield(XmlData,'Heading') && isfield(XmlData.Heading,'ImageName') |
---|
631 | [PP,FF,ext_ima_read]=fileparts(XmlData.Heading.ImageName); |
---|
632 | end |
---|
633 | if isfield(XmlData,'Time') |
---|
634 | time=XmlData.Time; |
---|
635 | end |
---|
636 | if isfield(XmlData,'Camera') |
---|
637 | if isfield(XmlData.Camera,'NbSlice')&& ~isempty(XmlData.Camera.NbSlice) |
---|
638 | NbSlice_calib{iview}=XmlData.Camera.NbSlice;% Nbre of slices for Zindex in phys transform |
---|
639 | if ~isequal(NbSlice_calib{iview},NbSlice_calib{1}) |
---|
640 | msgbox_uvmat('WARNING','inconsistent number of Z indices for the two field series'); |
---|
641 | end |
---|
642 | end |
---|
643 | if isfield(XmlData.Camera,'TimeUnit')&& ~isempty(XmlData.Camera.TimeUnit) |
---|
644 | TimeUnit=XmlData.Camera.TimeUnit; |
---|
645 | end |
---|
646 | end |
---|
647 | if ~isempty(warntext) |
---|
648 | msgbox_uvmat('WARNING',warntext) |
---|
649 | end |
---|
650 | elseif isequal(ext_imadoc,'.civ') |
---|
651 | [error,XmlData.Time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([FileBase '.civ']); |
---|
652 | time=XmlData.Time; |
---|
653 | size(time) |
---|
654 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0]; |
---|
655 | GeometryCalib.Tx=0; |
---|
656 | GeometryCalib.Ty=0; |
---|
657 | GeometryCalib.Tz=1; |
---|
658 | GeometryCalib.dpx=1; |
---|
659 | GeometryCalib.dpy=1; |
---|
660 | GeometryCalib.sx=1; |
---|
661 | GeometryCalib.Cx=0; |
---|
662 | GeometryCalib.Cy=0; |
---|
663 | GeometryCalib.f=1; |
---|
664 | GeometryCalib.kappa1=0; |
---|
665 | GeometryCalib.CoordUnit='cm'; |
---|
666 | XmlData.GeometryCalib=GeometryCalib; |
---|
667 | if error==2, warntext=['no file ' FileBase '.civ']; |
---|
668 | elseif error==1, warntext='inconsistent number of fields in the .civ file'; |
---|
669 | end |
---|
670 | % set(handles.npx,'String',num2str(npx));%fills nbre of pixels x box |
---|
671 | % set(handles.npy,'String',num2str(npy));%fills nbre of pixels y box |
---|
672 | % set(handles.pxcm,'String',num2str(pxcmx));%fills scale x (pixel/cm) box |
---|
673 | % set(handles.pycm,'String',num2str(pxcmy));%fills scale y (pixel/cm) box |
---|
674 | % set(handles.pxcm,'Visible','on');%fills scale x (pixel/cm) box |
---|
675 | % set(handles.pycm,'Visible','on');%fills scale y (pixel/cm) box |
---|
676 | % set(handles.view_xml,'Visible','on') |
---|
677 | % set(handles.view_xml,'String','view .civ') |
---|
678 | end |
---|
679 | if addtest |
---|
680 | SeriesData.Time=[{time} SeriesData.Time]; |
---|
681 | else |
---|
682 | SeriesData.Time={time}; |
---|
683 | end |
---|
684 | |
---|
685 | if ~isempty(time) |
---|
686 | siztime=size(time); |
---|
687 | nb_field=siztime(1); |
---|
688 | nb_field2=siztime(2); |
---|
689 | end |
---|
690 | set(handles.TimeUnit,'String',TimeUnit) |
---|
691 | if isempty(nb_field) |
---|
692 | nb_field_str='?'; |
---|
693 | nb_field_str2='?'; |
---|
694 | else |
---|
695 | nb_field_str=num2str(nb_field); |
---|
696 | nb_field_str2=num2str(nb_field2); |
---|
697 | end |
---|
698 | if addtest |
---|
699 | nb_field_cell=[{nb_field_str} ;get(handles.nb_field,'String')]; |
---|
700 | nb_field2_cell=[{nb_field_str2} ;get(handles.nb_field2,'String')]; |
---|
701 | else |
---|
702 | nb_field_cell={nb_field_str}; |
---|
703 | nb_field2_cell={nb_field_str2}; |
---|
704 | end |
---|
705 | set(handles.nb_field,'String',nb_field_cell); |
---|
706 | set(handles.nb_field2,'String',nb_field2_cell); |
---|
707 | set(hseries,'UserData',SeriesData); |
---|
708 | |
---|
709 | %number of slices |
---|
710 | if isfield(XmlData,'GeometryCalib') && isfield(XmlData.GeometryCalib,'SliceCoord') |
---|
711 | siz=size(XmlData.GeometryCalib.SliceCoord); |
---|
712 | if siz(1)>1 |
---|
713 | NbSlice=siz(1); |
---|
714 | else |
---|
715 | NbSlice=1; |
---|
716 | end |
---|
717 | set(handles.NbSlice,'String',num2str(NbSlice)) |
---|
718 | end |
---|
719 | |
---|
720 | % set menus of index pairs |
---|
721 | NomType_Callback(hObject, eventdata, handles) |
---|
722 | |
---|
723 | dir_perso=prefdir; |
---|
724 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
725 | % save(profil_perso, 'FileBase'); %store the root name for future opening of uvmat |
---|
726 | if exist(profil_perso,'file') |
---|
727 | save (profil_perso,'RootPath','SubDir','RootFile','NomType', '-append'); %store the root name for future opening of uvmat |
---|
728 | else |
---|
729 | txt=ver; |
---|
730 | Release=txt(1).Release; |
---|
731 | relnumb=str2num(Release(3:4)); |
---|
732 | if relnumb >= 14 |
---|
733 | save (profil_perso,'RootPath','SubDir','RootFile','NomType','-V6') %store the root name for future opening of uvmat |
---|
734 | else |
---|
735 | save(profil_perso,'RootPath','SubDir','RootFile','NomType') |
---|
736 | end |
---|
737 | end |
---|
738 | set(handles.RootPath,'BackgroundColor',[1 1 1]) |
---|
739 | set(handles.PathCampaign,'String',SeriesData.PathCampaign) |
---|
740 | last_j_Callback(hObject, eventdata, handles) |
---|
741 | last_i_Callback(hObject, eventdata, handles) |
---|
742 | |
---|
743 | %------------------------------------------------------------ |
---|
744 | function RootPath_Callback(hObject, eventdata, handles) |
---|
745 | Val=get(handles.RootPath,'Value'); |
---|
746 | synchronise_view(handles,Val) |
---|
747 | NomType_Callback(hObject, eventdata, handles) |
---|
748 | %------------------------------------------------------------ |
---|
749 | |
---|
750 | function synchronise_view(handles,Val) |
---|
751 | set(handles.RootPath,'Value',Val) |
---|
752 | set(handles.SubDir,'Value',Val) |
---|
753 | set(handles.RootFile,'Value',Val) |
---|
754 | set(handles.NomType,'Value',Val) |
---|
755 | set(handles.FileExt,'Value',Val) |
---|
756 | set(handles.nb_field,'Value',Val) |
---|
757 | set(handles.nb_field2,'Value',Val) |
---|
758 | set(handles.time_first,'Value',Val) |
---|
759 | set(handles.time_last,'Value',Val) |
---|
760 | |
---|
761 | |
---|
762 | %--------------------------------------------------------- |
---|
763 | % Executes on carriage return on the subdir civ1 edit window |
---|
764 | %-------------------------------------------------------- |
---|
765 | function SubDir_Callback(hObject, eventdata, handles) |
---|
766 | |
---|
767 | Val=get(handles.SubDir,'Value'); |
---|
768 | synchronise_view(handles,Val) |
---|
769 | NomType_Callback(hObject, eventdata, handles) |
---|
770 | |
---|
771 | %-------------------------------------------------------------- |
---|
772 | %function activated when a new filebase (image series) is introduced |
---|
773 | %------------------------------------------------------------ |
---|
774 | function RootFile_Callback(hObject, eventdata, handles) |
---|
775 | Val=get(handles.RootFile,'Value'); |
---|
776 | synchronise_view(handles,Val) |
---|
777 | NomType_Callback(hObject, eventdata, handles) |
---|
778 | |
---|
779 | %-------------------------------------------------------------- |
---|
780 | %function activated when a new filebase (image series) is introduced |
---|
781 | %------------------------------------------------------------ |
---|
782 | function FileExt_Callback(hObject, eventdata, handles) |
---|
783 | Val=get(handles.FileExt,'Value'); |
---|
784 | synchronise_view(handles,Val) |
---|
785 | |
---|
786 | %-------------------------------------------------------------- |
---|
787 | %function activated when a new filebase (image series) is introduced |
---|
788 | %------------------------------------------------------------ |
---|
789 | function nb_field_Callback(hObject, eventdata, handles) |
---|
790 | Val=get(handles.nb_field,'Value'); |
---|
791 | synchronise_view(handles,Val) |
---|
792 | |
---|
793 | %-------------------------------------------------------------- |
---|
794 | %function activated when a new filebase (image series) is introduced |
---|
795 | %------------------------------------------------------------ |
---|
796 | function nb_field2_Callback(hObject, eventdata, handles) |
---|
797 | Val=get(handles.nb_field2,'Value'); |
---|
798 | synchronise_view(handles,Val) |
---|
799 | |
---|
800 | %-------------------------------------------------------------- |
---|
801 | %function activated when a new filebase (image series) is introduced |
---|
802 | %------------------------------------------------------------ |
---|
803 | function time_first_Callback(hObject, eventdata, handles) |
---|
804 | Val=get(handles.time_first,'Value'); |
---|
805 | synchronise_view(handles,Val) |
---|
806 | |
---|
807 | %-------------------------------------------------------------- |
---|
808 | %function activated when a new filebase (image series) is introduced |
---|
809 | %------------------------------------------------------------ |
---|
810 | function time_last_Callback(hObject, eventdata, handles) |
---|
811 | Val=get(handles.time_last,'Value'); |
---|
812 | synchronise_view(handles,Val) |
---|
813 | |
---|
814 | %-------------------------------------------------------------- |
---|
815 | %function activated by NomType |
---|
816 | %------------------------------------------------------------ |
---|
817 | NomType_Callback(hObject, eventdata, handles) |
---|
818 | |
---|
819 | function NomType_Callback(hObject, eventdata, handles) |
---|
820 | hseries=get(handles.ProjObject,'Parent'); |
---|
821 | SeriesData=get(hseries,'UserData'); |
---|
822 | if isfield(SeriesData,'NomType') |
---|
823 | NomTypeCell=SeriesData.NomType; |
---|
824 | else |
---|
825 | NomTypeCell={}; |
---|
826 | end |
---|
827 | nbfield2_cell=get(handles.nb_field2,'String'); |
---|
828 | val=get(handles.nb_field2,'Value'); |
---|
829 | if iscell(nbfield2_cell) |
---|
830 | nbfield2=str2num(nbfield2_cell{val}); |
---|
831 | else |
---|
832 | nbfield2=str2num(nbfield2_cell); |
---|
833 | end |
---|
834 | nbfield_cell=get(handles.nb_field,'String'); |
---|
835 | if iscell(nbfield_cell) |
---|
836 | nbfield=str2num(nbfield_cell{val}); |
---|
837 | else |
---|
838 | nbfield=str2num(nbfield_cell); |
---|
839 | end |
---|
840 | |
---|
841 | set(handles.mode,'Visible','off') % do not show index pairs by default |
---|
842 | set(handles.list_pair_civ,'Visible','off') |
---|
843 | set(handles.ref_i,'Visible','off') |
---|
844 | set(handles.ref_i_text,'Visible','off') |
---|
845 | testpair=0; |
---|
846 | state_j='off'; |
---|
847 | %set the menus of image pairs and default selection for series |
---|
848 | %list pairs if relevant |
---|
849 | Val=get(handles.NomType,'Value'); |
---|
850 | synchronise_view(handles,Val) |
---|
851 | if ~isempty(NomTypeCell) |
---|
852 | NomType=NomTypeCell{Val}; |
---|
853 | switch NomType |
---|
854 | case {'_i1-i2_j', '_i1-i2'} |
---|
855 | set(handles.mode,'String',{'series(Di)'}) |
---|
856 | set(handles.mode,'Value',1); |
---|
857 | set(handles.mode,'Visible','on') |
---|
858 | testpair=1; |
---|
859 | case {'#_ab'} |
---|
860 | set(handles.mode,'String',{'bursts'}) |
---|
861 | set(handles.mode,'Value',1); |
---|
862 | testpair=1; |
---|
863 | case '_i_j1-j2' |
---|
864 | set(handles.mode,'String',{'bursts';'series(Dj)'})%multiple choice |
---|
865 | if ~isempty(nbfield) && ~isempty(nbfield2) && ((nbfield2>10) || (nbfield==1)) |
---|
866 | set(handles.mode,'Value',2); |
---|
867 | else |
---|
868 | set(handles.mode,'Value',1);% advice 'bursts' for small bursts |
---|
869 | end |
---|
870 | set(handles.mode,'Visible','on') |
---|
871 | testpair=1; |
---|
872 | end |
---|
873 | switch NomType |
---|
874 | case {'_i_j','_i_j1-j2','_i1-i2_j','#_ab'},% two navigation indices |
---|
875 | state_j='on'; |
---|
876 | end |
---|
877 | end |
---|
878 | if testpair |
---|
879 | mode_Callback(hObject, eventdata, handles) |
---|
880 | else |
---|
881 | set(handles.NomType,'String',NomTypeCell) |
---|
882 | end |
---|
883 | set(handles.first_j,'Visible',state_j) |
---|
884 | set(handles.incr_j,'Visible',state_j) |
---|
885 | set(handles.last_j,'Visible',state_j) |
---|
886 | set(handles.nb_field2,'Visible',state_j) |
---|
887 | |
---|
888 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%???????????? |
---|
889 | % --- Executes on button press in mode. |
---|
890 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
891 | function mode_Callback(hObject, eventdata, handles) |
---|
892 | hseries=get(handles.mode,'parent'); |
---|
893 | SeriesData=get(hseries,'UserData'); |
---|
894 | mode_list=get(handles.mode,'String'); |
---|
895 | mode_value=get(handles.mode,'Value'); |
---|
896 | mode=mode_list{mode_value}; |
---|
897 | NomType=[]; |
---|
898 | test_find_pair=0; |
---|
899 | if isfield(SeriesData,'NomType') |
---|
900 | NomTypeCell=SeriesData.NomType; |
---|
901 | Val=get(handles.NomType,'Value'); |
---|
902 | NomType=NomTypeCell{Val}; |
---|
903 | test_find_pair=isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j')|| isequal(NomType,'_i1-i2')|| isequal(NomType,'#_ab'); |
---|
904 | end |
---|
905 | % displ_num=[];%default |
---|
906 | % first_i=str2num(get(handles.first_i,'String')); |
---|
907 | % last_i=str2num(get(handles.last_i,'String')); |
---|
908 | time=[]; |
---|
909 | if isfield(SeriesData,'Time') |
---|
910 | time=SeriesData.Time{1}; %get the set of times |
---|
911 | end |
---|
912 | siztime=size(time); |
---|
913 | nbfield=siztime(1); |
---|
914 | nbfield2=siztime(2); |
---|
915 | indchosen=1; %%first pair selected by default |
---|
916 | if isequal(mode,'bursts') |
---|
917 | enable_i(handles,'On') |
---|
918 | enable_j(handles,'Off') |
---|
919 | elseif isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j') |
---|
920 | enable_i(handles,'On') |
---|
921 | enable_j(handles,'On') |
---|
922 | else |
---|
923 | enable_i(handles,'On') |
---|
924 | enable_j(handles,'Off') |
---|
925 | end |
---|
926 | |
---|
927 | |
---|
928 | % elseif isequal(mode,'series(Dj)') |
---|
929 | % enable_j(handles,'On') |
---|
930 | % if nbfield==1 |
---|
931 | % enable_i(handles,'Off') |
---|
932 | % else |
---|
933 | % enable_i(handles,'On') |
---|
934 | % end |
---|
935 | % elseif isequal(mode,'series(Di)') |
---|
936 | % if nbfield2 > 1 |
---|
937 | % enable_j(handles,'On') |
---|
938 | % else |
---|
939 | % enable_j(handles,'Off') |
---|
940 | % end |
---|
941 | % end |
---|
942 | set(handles.list_pair_civ,'Value',indchosen);%set the default choice of image pairs for civ1 |
---|
943 | % SetSeries.displ_num=displ_num; |
---|
944 | set(hseries,'UserData',SeriesData) |
---|
945 | |
---|
946 | %list pairs if relevant |
---|
947 | if test_find_pair |
---|
948 | find_netcpair_civ(hObject, eventdata, handles,Val) |
---|
949 | end |
---|
950 | |
---|
951 | %------------------------------------- |
---|
952 | function enable_i(handles,state) |
---|
953 | set(handles.i_txt,'Visible',state) |
---|
954 | set(handles.first_i,'Visible',state) |
---|
955 | set(handles.last_i,'Visible',state) |
---|
956 | set(handles.incr_i,'Visible',state) |
---|
957 | set(handles.nb_field,'Visible',state) |
---|
958 | set(handles.ref_i,'Visible',state) |
---|
959 | set(handles.ref_i_text,'Visible',state) |
---|
960 | |
---|
961 | %----------------------------------- |
---|
962 | function enable_j(handles,state) |
---|
963 | set(handles.j_txt,'Visible',state) |
---|
964 | set(handles.first_j,'Visible',state) |
---|
965 | set(handles.last_j,'Visible',state) |
---|
966 | set(handles.incr_j,'Visible',state) |
---|
967 | set(handles.nb_field2,'Visible',state) |
---|
968 | set(handles.ref_j,'Visible',state) |
---|
969 | set(handles.ref_j_text,'Visible',state) |
---|
970 | |
---|
971 | %----------------------------------- |
---|
972 | function view_FieldMenu(handles,state) |
---|
973 | set(handles.FieldMenu,'Visible',state) |
---|
974 | set(handles.Field_text,'Visible',state) |
---|
975 | set(handles.Field_frame,'Visible',state) |
---|
976 | |
---|
977 | %----------------------------------- |
---|
978 | function view_FieldMenu_1(handles,state) |
---|
979 | set(handles.FieldMenu_1,'Visible',state) |
---|
980 | set(handles.Field_text_1,'Visible',state) |
---|
981 | |
---|
982 | %----------------------------------- |
---|
983 | function view_TRANSFORM(handles,state) |
---|
984 | set(handles.TRANSFORM_frame,'Visible',state) |
---|
985 | set(handles.CoordType,'Visible',state); |
---|
986 | set(handles.TRANSFORM_title,'Visible',state) |
---|
987 | |
---|
988 | %-------------------------------------------------------------- |
---|
989 | % determine the menu for civ1 pairs depending on existing netcdf file at the middle of |
---|
990 | % the field series set by first_i, incr, last_i |
---|
991 | %---------------------------------------------------------------- |
---|
992 | function find_netcpair_civ(hObject, eventdata, handles,Val) |
---|
993 | hseries=get(handles.list_pair_civ,'parent'); |
---|
994 | SeriesData=get(hseries,'UserData'); |
---|
995 | % NomTypeCell=get(handles.NomType,'String'); |
---|
996 | NomTypeCell=SeriesData.NomType; |
---|
997 | NomType=NomTypeCell{Val}; |
---|
998 | set(handles.list_pair_civ,'Visible','on') |
---|
999 | %nomenclature types |
---|
1000 | RootPathCell=get(handles.RootPath,'String'); |
---|
1001 | filepath=RootPathCell{Val}; |
---|
1002 | RootFileCell=get(handles.RootFile,'String'); |
---|
1003 | filename=RootFileCell{Val}; |
---|
1004 | filebase=fullfile(filepath,filename); |
---|
1005 | SubDirCell=get(handles.SubDir,'String'); |
---|
1006 | subdir=SubDirCell{Val}; |
---|
1007 | if ~exist(fullfile(filepath,subdir),'dir') |
---|
1008 | msgbox_uvmat('ERROR',['no civ file available: subdirectory ' subdir ' does not exist']) |
---|
1009 | set(handles.list_pair_civ,'String',{''}); |
---|
1010 | return |
---|
1011 | end |
---|
1012 | mode_list=get(handles.mode,'String'); |
---|
1013 | mode_value=get(handles.mode,'Value'); |
---|
1014 | mode=mode_list{mode_value}; |
---|
1015 | |
---|
1016 | %reads image numbers from the interface |
---|
1017 | ref_i=str2num(get(handles.ref_i,'String')); |
---|
1018 | ref_j=str2num(get(handles.ref_j,'String')); |
---|
1019 | % time=[]; |
---|
1020 | % ref_time=[]; |
---|
1021 | ref_time=0; |
---|
1022 | if isfield(SeriesData,'Time')&~isempty(SeriesData.Time{Val})&~isequal(SeriesData.Time{Val},0) |
---|
1023 | time=SeriesData.Time{Val}; %get the set of times |
---|
1024 | siztime=size(time); |
---|
1025 | nbfield=siztime(1); |
---|
1026 | nbfield2=siztime(2); |
---|
1027 | % test_imadoc=1; |
---|
1028 | else |
---|
1029 | % test_imadoc=0;%no image documentation file |
---|
1030 | nbfield=50; |
---|
1031 | nbfield2=50;%default max number of pairs |
---|
1032 | end |
---|
1033 | %look for existing processed pairs involving the field at the middle of the series if civ1 will not |
---|
1034 | % be performed, while the result is needed for next steps. |
---|
1035 | displ_pair={''}; |
---|
1036 | displ_num=[]; |
---|
1037 | ind_exist=0; |
---|
1038 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
1039 | if length(TimeUnit)>=1 |
---|
1040 | dtunit=['m' TimeUnit]; |
---|
1041 | else |
---|
1042 | dtunit='e-03'; |
---|
1043 | end |
---|
1044 | if isequal(mode,'series(Di)') |
---|
1045 | for index=1:min(nbfield-1,50) |
---|
1046 | filename=name_generator(filebase,ref_i-floor(index/2),ref_j,'.nc',NomType,1,ref_i+ceil(index/2),ref_j,subdir); |
---|
1047 | select=(exist(filename,'file')==2); |
---|
1048 | if select==1 |
---|
1049 | ind_exist=ind_exist+1; |
---|
1050 | displ_num(1,ind_exist)=0; |
---|
1051 | displ_num(2,ind_exist)=0; |
---|
1052 | displ_num(3,ind_exist)=-floor(index/2); |
---|
1053 | displ_num(4,ind_exist)=ceil(index/2); |
---|
1054 | %[cte_detect,vdt,cte_read]=read_netcdf(filename,{'dt','dt2','absolut_time_T0','absolute_time_TO_2'}); |
---|
1055 | [Cte,var_detect,ichoice]=nc2struct(filename,{}); |
---|
1056 | if isfield(Cte,'dt2') |
---|
1057 | dt=Cte.dt2; |
---|
1058 | elseif isfield(Cte,'dt') |
---|
1059 | dt=Cte.dt; |
---|
1060 | end |
---|
1061 | if isfield(Cte,'absolut_time_TO_2') |
---|
1062 | ref_time(ind_exist)=Cte.absolut_time_TO_2;%civ2 data used in priority |
---|
1063 | elseif isfield(Cte,'absolut_time_TO') |
---|
1064 | ref_time(ind_exist)=Cte.absolut_time_TO;%civ2 data used in priorit |
---|
1065 | elseif isfield(Cte,'Time') |
---|
1066 | ref_time(ind_exist)=Cte.Time; |
---|
1067 | end |
---|
1068 | displ_pair{ind_exist}=['Di= ' num2str(-floor(index/2)) '|' num2str(ceil(index/2)) ' :dt= ' num2str(dt*1000) dtunit]; |
---|
1069 | end |
---|
1070 | end |
---|
1071 | set(handles.list_pair_civ,'String',[displ_pair';{'Di=*|*'}]); |
---|
1072 | elseif isequal(mode,'series(Dj)')% series on the j index |
---|
1073 | for index=1:min(nbfield2-1,50) |
---|
1074 | filename=name_generator(filebase,ref_i,ref_j-floor(index/2),'.nc',NomType,1,ref_i,ref_j+ceil(index/2),subdir); |
---|
1075 | select=(exist(filename,'file')==2); |
---|
1076 | if select==1 |
---|
1077 | ind_exist=ind_exist+1; |
---|
1078 | displ_num(1,ind_exist)=-floor(index/2); |
---|
1079 | displ_num(2,ind_exist)=ceil(index/2); |
---|
1080 | displ_num(3,ind_exist)=0; |
---|
1081 | displ_num(4,ind_exist)=0; |
---|
1082 | %[cte_detect,vdt,cte_read]=read_netcdf(filename,{'dt','dt2','absolut_time_T0','absolute_time_TO_2'}); |
---|
1083 | [Cte,var_detect,ichoice]=nc2struct(nc,{}); |
---|
1084 | if isfield(Cte,'dt2') |
---|
1085 | dt=Cte.dt2; |
---|
1086 | elseif isfield(Cte,'dt') |
---|
1087 | dt=Cte.dt; |
---|
1088 | end |
---|
1089 | if isfield(Cte,'absolut_time_TO_2') |
---|
1090 | ref_time(ind_exist)=Cte.absolut_time_TO_2;%civ2 data used in priority |
---|
1091 | elseif isfield(Cte,'absolut_time_TO') |
---|
1092 | ref_time(ind_exist)=Cte.absolut_time_TO;%civ2 data used in priorit |
---|
1093 | elseif isfield(Cte,'Time') |
---|
1094 | ref_time(ind_exist)=Cte.Time; |
---|
1095 | end |
---|
1096 | % if cte_detect(2)==1; |
---|
1097 | % dt=cte_read(2); |
---|
1098 | % ref_time(ind_exist)=cte_read(4);%civ2 data used in priority |
---|
1099 | % else |
---|
1100 | % dt=cte_read(1); |
---|
1101 | % ref_time(ind_exist)=cte_read(3); |
---|
1102 | % end |
---|
1103 | displ_pair{ind_exist}=['Dj= ' num2str(-floor(index/2)) '|' num2str(ceil(index/2)) ' :dt= ' num2str(dt*1000) dtunit]; |
---|
1104 | end |
---|
1105 | end |
---|
1106 | set(handles.list_pair_civ,'String',[displ_pair';{'Dj=*|*'}]); |
---|
1107 | elseif isequal(mode,'bursts') %case of bursts |
---|
1108 | for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'bursts' mode |
---|
1109 | for numod_b=(numod_a+1):nbfield2 |
---|
1110 | [filename]=name_generator(filebase,ref_i,numod_a,'.nc',NomType,1,ref_i,numod_b,subdir); |
---|
1111 | select=(exist(filename,'file')==2); |
---|
1112 | if select==1 |
---|
1113 | ind_exist=ind_exist+1; |
---|
1114 | numlist_a(ind_exist)=numod_a; |
---|
1115 | numlist_b(ind_exist)=numod_b; |
---|
1116 | Attr=nc2struct(filename,[]); |
---|
1117 | isfield(Attr,'absolut_time_T0_2') |
---|
1118 | if isfield(Attr,'dt2') |
---|
1119 | dt(ind_exist)=Attr.dt2; |
---|
1120 | ref_time(ind_exist)=Attr.absolut_time_T0_2; |
---|
1121 | elseif isfield(Attr,'dt')& isfield(Attr,'absolut_time_T0') |
---|
1122 | dt(ind_exist)=Attr.dt; |
---|
1123 | ref_time(ind_exist)=Attr.absolut_time_T0; |
---|
1124 | else |
---|
1125 | dt(ind_exist)=NaN;%no information on dt |
---|
1126 | end |
---|
1127 | %determine nom_type_ima for pair display (used in num2stra.m) |
---|
1128 | switch NomType |
---|
1129 | case {'#ab'} |
---|
1130 | nom_type_ima='#a'; |
---|
1131 | case {'#AB'} |
---|
1132 | nom_type_ima='#A'; |
---|
1133 | otherwise |
---|
1134 | nom_type_ima='_i_j'; |
---|
1135 | end |
---|
1136 | displ_pair{ind_exist}=['j= ' num2stra(numod_a,nom_type_ima,2) '-' num2stra(numod_b,nom_type_ima,2) ... |
---|
1137 | ' :dt= ' num2str(dt(ind_exist)*1000)]; |
---|
1138 | end |
---|
1139 | end |
---|
1140 | set(handles.list_pair_civ,'String',[displ_pair';{'j=*-*'}]); |
---|
1141 | end |
---|
1142 | if exist('dt','var') & ~isempty(dt) |
---|
1143 | [dtsort,indsort]=sort(dt); |
---|
1144 | displ_num(1,:)=numlist_a(indsort); |
---|
1145 | displ_num(2,:)=numlist_b(indsort); |
---|
1146 | displ_num(3,:)=0; |
---|
1147 | displ_num(4,:)=0; |
---|
1148 | displ_pair=displ_pair(indsort); |
---|
1149 | ref_time=ref_time(indsort); |
---|
1150 | end |
---|
1151 | end |
---|
1152 | if ind_exist==0 |
---|
1153 | if isequal(mode,'series(Dj)') | isequal(mode,'st_series(Dj)') |
---|
1154 | msgbox_uvmat('ERROR',['no .nc file available for the selected reference index j=' num2str(ref_j) ' and subdirectory ' subdir]) |
---|
1155 | else |
---|
1156 | msgbox_uvmat('ERROR',['no .nc file available for the selected reference index i=' num2str(ref_i) ' and subdirectory ' subdir]) |
---|
1157 | end |
---|
1158 | if isequal(mode,'bursts') %case of bursts |
---|
1159 | set(handles.list_pair_civ,'String',{'j=*-*'}); |
---|
1160 | elseif isequal(mode,'series(Di)') %case of bursts |
---|
1161 | set(handles.list_pair_civ,'String',{'Di=*|*'}); |
---|
1162 | elseif isequal(mode,'series(Dj)') %case of bursts |
---|
1163 | set(handles.list_pair_civ,'String',{'Dj=*|*'}); |
---|
1164 | end |
---|
1165 | end |
---|
1166 | |
---|
1167 | val=get(handles.list_pair_civ,'Value'); |
---|
1168 | if val > length(displ_pair) |
---|
1169 | set(handles.list_pair_civ,'Value',1);% first pair proposed by default in the menu |
---|
1170 | val=1; |
---|
1171 | end |
---|
1172 | iview=get(handles.NomType,'Value'); |
---|
1173 | SeriesData.displ_num(iview,:)=(displ_num(:,val))'; |
---|
1174 | SeriesData.ref_time=ref_time; |
---|
1175 | set(hseries,'UserData',SeriesData) |
---|
1176 | list_pair_civ_Callback(hObject, eventdata, handles) |
---|
1177 | |
---|
1178 | %------------------------------------------------------------- |
---|
1179 | % --- Executes on selection in list_pair_civ. |
---|
1180 | function list_pair_civ_Callback(hObject, eventdata, handles) |
---|
1181 | %------------------------------------------------------------ |
---|
1182 | |
---|
1183 | %update first_i and last_i according to the chosen image pairs |
---|
1184 | testupdate=0; |
---|
1185 | Val=get(handles.RootPath,'Value'); |
---|
1186 | IndexCell=get(handles.NomType,'String'); |
---|
1187 | hseries=get(handles.list_pair_civ,'parent'); |
---|
1188 | SeriesData=get(hseries,'UserData'); |
---|
1189 | NomType=SeriesData.NomType{Val}; |
---|
1190 | list_pair=get(handles.list_pair_civ,'String');%get the menu of image pairs |
---|
1191 | index_pair=get(handles.list_pair_civ,'Value'); |
---|
1192 | str_pair=list_pair{index_pair}; |
---|
1193 | ind_equ=strfind(str_pair,'=');%find '=' |
---|
1194 | ind_sep=strfind(str_pair,'|');%find pair separator '|' |
---|
1195 | ind_com=strfind(str_pair,':');%find ':' |
---|
1196 | test_bursts=0; |
---|
1197 | if isempty(ind_sep) |
---|
1198 | ind_sep=strfind(str_pair,'-');%find pair separator if it is not '|' |
---|
1199 | test_bursts=1;% we are in the case of bursts |
---|
1200 | end |
---|
1201 | displ_num=[0 0 0 0]; %default |
---|
1202 | if ~isempty(ind_sep)&& ~strcmp(str_pair(ind_sep-1),'*')% if there is a pair separator ('|' or '-') |
---|
1203 | num1_str=str_pair(ind_equ(1)+1:ind_sep-1); |
---|
1204 | num2_str=str_pair(ind_sep+1:ind_com-1); |
---|
1205 | num1=str2double(num1_str); |
---|
1206 | num2=str2double(num2_str); |
---|
1207 | if isequal(num1_str(1),' ') |
---|
1208 | num1_str(1)=[]; |
---|
1209 | end |
---|
1210 | if isequal(num2_str(end),' ') |
---|
1211 | num2_str(end)=[]; |
---|
1212 | end |
---|
1213 | switch NomType |
---|
1214 | case {'_i1-i2_j'} |
---|
1215 | if isequal(num1_str(1),'0') |
---|
1216 | IndexCell{Val}=['_(i-(i+' num2_str ')_j']; |
---|
1217 | else |
---|
1218 | IndexCell{Val}=['_(i' num1_str ')-(i+' num2_str ')_j']; |
---|
1219 | end |
---|
1220 | displ_num(3)=num1; |
---|
1221 | displ_num(4)=num2; |
---|
1222 | case {'_i1-i2'} |
---|
1223 | if isequal(num1_str(1),'0') |
---|
1224 | IndexCell{Val}=['_(i' num1_str ')-(i+' num2_str ')']; |
---|
1225 | else |
---|
1226 | IndexCell{Val}=['_(i' num1_str ')-(i+' num2_str ')']; |
---|
1227 | end |
---|
1228 | displ_num(3)=num1; |
---|
1229 | displ_num(4)=num2; |
---|
1230 | case '_i_j1-j2' |
---|
1231 | if test_bursts |
---|
1232 | IndexCell{Val}=['_i_' num1_str '-' num2_str ]; |
---|
1233 | else |
---|
1234 | if isequal(num1_str(1),'0') |
---|
1235 | IndexCell{Val}=['_i_j-(j+' num2_str ')']; |
---|
1236 | else |
---|
1237 | IndexCell{Val}=['_i_(j' num1_str ')-(j+' num2_str ')']; |
---|
1238 | end |
---|
1239 | end |
---|
1240 | displ_num(1)=num1; |
---|
1241 | displ_num(2)=num2; |
---|
1242 | case {'#_ab'} %TO COMPLETE |
---|
1243 | IndexCell{Val}=['_i_' num1_str '-' num2_str ]; |
---|
1244 | |
---|
1245 | end |
---|
1246 | end |
---|
1247 | set(handles.NomType,'String',IndexCell) |
---|
1248 | SeriesData.displ_num(Val,:)=displ_num; |
---|
1249 | set(hseries,'UserData',SeriesData) |
---|
1250 | % set(handles.NomType,'Value',Val) |
---|
1251 | |
---|
1252 | if ~isequal(str_pair,'Dj=*|*')&~isequal(str_pair,'Di=*|*') |
---|
1253 | mode_list=get(handles.mode,'String'); |
---|
1254 | mode_value=get(handles.mode,'Value'); |
---|
1255 | mode=mode_list{mode_value}; |
---|
1256 | if isequal(mode,'series(Di)') |
---|
1257 | first_i=str2num(get(handles.first_i,'String')); |
---|
1258 | last_i=str2num(get(handles.last_i,'String')); |
---|
1259 | incr_i=str2num(get(handles.incr_i,'String')); |
---|
1260 | num1=first_i:incr_i:last_i; |
---|
1261 | lastfieldCell=get(handles.nb_field,'String'); |
---|
1262 | lastfield=str2num(lastfieldCell{1}); |
---|
1263 | if ~isempty(lastfield) |
---|
1264 | ind=find((num1-floor(index_pair/2)*ones(size(num1))>0)& (num1+ceil(index_pair/2)*ones(size(num1))<=lastfield)); |
---|
1265 | num1=num1(ind); |
---|
1266 | end |
---|
1267 | set(handles.first_i,'String',num2str(num1(1))); |
---|
1268 | set(handles.last_i,'String',num2str(num1(end))); |
---|
1269 | testupdate=1; |
---|
1270 | elseif isequal(mode,'series(Dj)') |
---|
1271 | first_j=str2num(get(handles.first_j,'String')); |
---|
1272 | last_j=str2num(get(handles.last_j,'String')); |
---|
1273 | incr_j=str2num(get(handles.incr_j,'String')); |
---|
1274 | num_j=first_j:incr_j:last_j; |
---|
1275 | lastfieldCell=get(handles.nb_field2,'String'); |
---|
1276 | if ~isempty(lastfieldCell) |
---|
1277 | lastfield2=lastfieldCell{1}; |
---|
1278 | ind=find((num_j-floor(index_pair/2)*ones(size(num_j))>0)& ... |
---|
1279 | (num_j+ceil(index_pair/2)*ones(size(num_j))<=lastfield2)); |
---|
1280 | end |
---|
1281 | testupdate=1; |
---|
1282 | end |
---|
1283 | |
---|
1284 | %update the first and last times of the series |
---|
1285 | if testupdate & isfield(SeriesData,'Time') |
---|
1286 | if ~isempty(SeriesData.Time{1}) |
---|
1287 | displ_time(handles,SeriesData.Time{1}); |
---|
1288 | end |
---|
1289 | end |
---|
1290 | end |
---|
1291 | %--------------------------------------------------- |
---|
1292 | % --- Executes on button press in RUN. |
---|
1293 | %------------------------------------------------------ |
---|
1294 | function RUN_Callback(hObject, eventdata, handles) |
---|
1295 | |
---|
1296 | %read root name and field type |
---|
1297 | set(handles.RUN,'BusyAction','queue'); |
---|
1298 | hseries=get(handles.RUN,'parent'); |
---|
1299 | set(0,'CurrentFigure',hseries) |
---|
1300 | if isequal(get(handles.GetObject,'Value'),1) |
---|
1301 | Series.GetObject=1; |
---|
1302 | GetObject_Callback(hObject, eventdata, handles) |
---|
1303 | else |
---|
1304 | Series.GetObject=0; |
---|
1305 | end |
---|
1306 | SeriesData=get(hseries,'UserData'); |
---|
1307 | if isfield(SeriesData,'sethandles') |
---|
1308 | if iscell(SeriesData.sethandles) |
---|
1309 | Series.sethandles=SeriesData.sethandles{1}; |
---|
1310 | else |
---|
1311 | Series.sethandles=SeriesData.sethandles;%retrieve the handles of the set_object interface (to define projection objects) |
---|
1312 | end |
---|
1313 | end |
---|
1314 | |
---|
1315 | %reinitiate waitbar position |
---|
1316 | Series.WaitbarPos=get(handles.waitbar_frame,'Position');%TO SUPPRESS |
---|
1317 | waitbarpos=Series.WaitbarPos; |
---|
1318 | waitbarpos(4)=0.005;%reinitialize waitbar to zero height |
---|
1319 | waitbarpos(2)=Series.WaitbarPos(2)+Series.WaitbarPos(4)-0.005; |
---|
1320 | set(handles.waitbar,'Position',waitbarpos) |
---|
1321 | |
---|
1322 | % read input file parameters and set menus |
---|
1323 | Series.PathProject=get(handles.PathCampaign,'String'); |
---|
1324 | RootPath=get(handles.RootPath,'String');% path of the root name of the first field series |
---|
1325 | RootFile=get(handles.RootFile,'String');% root name of the first field series |
---|
1326 | SubDir=get(handles.SubDir,'String');% subdirectory for netcdf files |
---|
1327 | FileExt=get(handles.FileExt,'String');%file extension |
---|
1328 | if isempty(SeriesData) |
---|
1329 | msgbox_uvmat('ERROR','no input file series') |
---|
1330 | return |
---|
1331 | end |
---|
1332 | NomType=SeriesData.NomType; |
---|
1333 | if length(RootPath)==1 %string character input for user fct |
---|
1334 | Series.RootPath=RootPath{1}; |
---|
1335 | Series.RootFile=RootFile{1}; |
---|
1336 | Series.SubDir=SubDir{1}; |
---|
1337 | Series.FileExt=FileExt{1}; |
---|
1338 | Series.NomType=NomType{1}; |
---|
1339 | else %cell input for user fct |
---|
1340 | Series.RootPath=RootPath; |
---|
1341 | Series.RootFile=RootFile; |
---|
1342 | Series.SubDir=SubDir; |
---|
1343 | Series.FileExt=FileExt; |
---|
1344 | Series.NomType=NomType; |
---|
1345 | end |
---|
1346 | if isequal(get(handles.FieldMenu,'Visible'),'on') |
---|
1347 | FieldMenu=get(handles.FieldMenu,'String'); |
---|
1348 | FieldValue=get(handles.FieldMenu,'Value'); |
---|
1349 | Series.Field=FieldMenu(FieldValue); |
---|
1350 | end |
---|
1351 | menu_coord_state=get(handles.CoordType,'Visible'); |
---|
1352 | Series.CoordType='';%default |
---|
1353 | if isequal(menu_coord_state,'on') |
---|
1354 | menu_coord=get(handles.CoordType,'String'); |
---|
1355 | menu_index=get(handles.CoordType,'Value'); |
---|
1356 | Series.CoordType=menu_coord{menu_index}; |
---|
1357 | end |
---|
1358 | Series.hseries=get(hObject,'Parent'); |
---|
1359 | if isequal(get(handles.ParamVal,'Visible'),'on') |
---|
1360 | ParamKey=get(handles.ParamKey,'String'); |
---|
1361 | if ischar(ParamKey) |
---|
1362 | ParamKey{1}=ParamKey; |
---|
1363 | end |
---|
1364 | ParamString=get(handles.ParamVal,'String'); |
---|
1365 | if ischar(ParamString) |
---|
1366 | for ilist=1:size(ParamString,1) |
---|
1367 | ParamVal{ilist}=ParamString(ilist,:); |
---|
1368 | end |
---|
1369 | else |
---|
1370 | ParamVal=ParamString; |
---|
1371 | end |
---|
1372 | end |
---|
1373 | |
---|
1374 | %read the set of field numbers |
---|
1375 | first_i=str2num(get(handles.first_i,'String')); |
---|
1376 | last_i=str2num(get(handles.last_i,'String')); |
---|
1377 | incr_i=str2num(get(handles.incr_i,'String')); |
---|
1378 | first_j=str2num(get(handles.first_j,'String')); |
---|
1379 | last_j=str2num(get(handles.last_j,'String')); |
---|
1380 | incr_j=str2num(get(handles.incr_j,'String')); |
---|
1381 | if ~isequal(get(handles.first_i,'Visible'),'on') |
---|
1382 | first_i=1; |
---|
1383 | last_i=1; |
---|
1384 | incr_i=1; |
---|
1385 | end |
---|
1386 | if ~isequal(get(handles.first_j,'Visible'),'on') |
---|
1387 | first_j=1; |
---|
1388 | last_j=1; |
---|
1389 | incr_j=1; |
---|
1390 | end |
---|
1391 | Series.NbSlice=str2num(get(handles.NbSlice,'String')); |
---|
1392 | if isequal(first_i,[])|isequal(first_j,[]), msgbox_uvmat('ERROR','first field number not defined'),... |
---|
1393 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
1394 | if isequal(last_i,[])| isequal(last_j,[]),msgbox_uvmat('ERROR','last field number not defined'),... |
---|
1395 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
1396 | if isequal(incr_i,[])| isequal(incr_j,[]),msgbox_uvmat('ERROR','increment in field number not defined'),... |
---|
1397 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
1398 | if last_i < first_i | last_j < first_j , msgbox_uvmat('ERROR','last field number must be larger than the first one'),... |
---|
1399 | set(handles.RUN, 'Enable','On'), set(handles.RUN,'BackgroundColor',[1 0 0]),return,end; |
---|
1400 | num_i=[first_i:incr_i:last_i]; |
---|
1401 | num_j=[first_j:incr_j:last_j]; |
---|
1402 | nbfield_cell=get(handles.nb_field,'String'); |
---|
1403 | nbfield=[]; %default |
---|
1404 | for iview=1:length(nbfield_cell) |
---|
1405 | nb=str2num(nbfield_cell{iview}); |
---|
1406 | if ~isempty(nb) |
---|
1407 | nbfield=[nbfield nb]; |
---|
1408 | end |
---|
1409 | end |
---|
1410 | nbfield=min(nbfield); |
---|
1411 | nbfield2_cell=get(handles.nb_field2,'String'); |
---|
1412 | nbfield2=[]; %default |
---|
1413 | for iview=1:length(nbfield2_cell) |
---|
1414 | nb=str2num(nbfield2_cell{iview}); |
---|
1415 | if ~isempty(nb) |
---|
1416 | nbfield2=[nbfield2 nb]; |
---|
1417 | end |
---|
1418 | end |
---|
1419 | nbfield2=min(nbfield2); |
---|
1420 | |
---|
1421 | %get complementary information from the 'series' interface |
---|
1422 | list_action=get(handles.ACTION,'String');% list menu action |
---|
1423 | index_action=get(handles.ACTION,'Value');% selected string index |
---|
1424 | action= list_action{index_action}; % selected string |
---|
1425 | mode_list=get(handles.mode,'String'); |
---|
1426 | index_mode=get(handles.mode,'Value'); |
---|
1427 | mode=mode_list{index_mode}; |
---|
1428 | ind_shift=0;%default |
---|
1429 | |
---|
1430 | %determine the list of input file names |
---|
1431 | nbmissing=0; |
---|
1432 | for iview=1:length(RootPath) |
---|
1433 | %case of pairs (.nc files) |
---|
1434 | |
---|
1435 | if isequal(NomType{iview},'_i_j1-j2')| isequal(NomType{iview},'_i1-i2_j')| isequal(NomType{iview},'_i1-i2')| isequal(NomType{iview},'#_ab') |
---|
1436 | ind_shift=SeriesData.displ_num(iview,:); |
---|
1437 | if isequal(ind_shift,[0 0 0 0]) % undefined pairs |
---|
1438 | if isequal(NomType{iview},'#_ab') |
---|
1439 | mode='#_ab'; |
---|
1440 | end |
---|
1441 | [num_i1,num_i2,num_j1,num_j2,nbmissing]=netseries_generator(fullfile(RootPath{iview},RootFile{iview}),SubDir{iview},mode,first_i,incr_i,last_i,first_j,incr_j,last_j); |
---|
1442 | else |
---|
1443 | [num_i1,num_i2,num_j1,num_j2,num_i,num_j]=find_file_indices(num_i,num_j,ind_shift,NomType{iview},mode); |
---|
1444 | if isempty(num_i) |
---|
1445 | msgbox_uvmat('ERROR','ERROR: empty set of input files chosen') |
---|
1446 | return |
---|
1447 | end |
---|
1448 | if num_i(1)>first_i |
---|
1449 | set(handles.first_i,'String',num2str(num_i(1)))%update the display of first field |
---|
1450 | last_i_Callback(hObject, eventdata, handles) |
---|
1451 | end |
---|
1452 | if num_i(end)<last_i |
---|
1453 | set(handles.last_i,'String',num2str(num_i(end)))%update the display of last field |
---|
1454 | last_i_Callback(hObject, eventdata, handles) |
---|
1455 | end |
---|
1456 | if num_j(1)>first_j |
---|
1457 | set(handles.first_j,'String',num2str(num_j(1)))%update the display of first field |
---|
1458 | last_j_Callback(hObject, eventdata, handles) |
---|
1459 | end |
---|
1460 | if num_j(end)<last_j |
---|
1461 | set(handles.last_j,'String',num2str(num_j(end)))%update the display of last field |
---|
1462 | last_j_Callback(hObject, eventdata, handles) |
---|
1463 | end |
---|
1464 | end |
---|
1465 | else%case of images |
---|
1466 | [num_i1,num_j1]=meshgrid(num_i,num_j); |
---|
1467 | num_i2=num_i1; |
---|
1468 | num_j2=num_j1; |
---|
1469 | end |
---|
1470 | if length(RootPath)>1 |
---|
1471 | num_i1_cell{iview}=num_i1; |
---|
1472 | num_i2_cell{iview}=num_i2; |
---|
1473 | num_j1_cell{iview}=num_j1; |
---|
1474 | num_j2_cell{iview}=num_j2; |
---|
1475 | end |
---|
1476 | end |
---|
1477 | |
---|
1478 | % RUN RUN' |
---|
1479 | path_series=which('series'); |
---|
1480 | list_path=get(handles.ACTION,'UserData'); |
---|
1481 | index=get(handles.ACTION,'Value'); |
---|
1482 | fct_path=list_path{index}; %path stored for the function ACTION |
---|
1483 | if ~isequal(fct_path,path_series) |
---|
1484 | eval(['spath=which(''' action ''');']) %spath = current path of the selected function ACTION |
---|
1485 | if ~isequal(spath,fct_path)& exist(fct_path,'dir') |
---|
1486 | addpath(fct_path)% add the prescribed path if not the current one |
---|
1487 | end |
---|
1488 | end |
---|
1489 | % fct_path |
---|
1490 | eval(['h_fun=@' action]) |
---|
1491 | if ~isequal(fct_path,path_series) |
---|
1492 | rmpath(fct_path)% add the prescribed path if not the current one |
---|
1493 | end |
---|
1494 | |
---|
1495 | Series.Action=action;%name of the processing programme |
---|
1496 | set(handles.RUN,'BackgroundColor',[0.831 0.816 0.784]) |
---|
1497 | drawnow |
---|
1498 | if length(RootPath)>1 |
---|
1499 | % feval(action,num_i1_cell,num_i2_cell,num_j1_cell,num_j2_cell,Series); |
---|
1500 | h_fun(num_i1_cell,num_i2_cell,num_j1_cell,num_j2_cell,Series); |
---|
1501 | else |
---|
1502 | h_fun(num_i1,num_i2,num_j1,num_j2,Series); |
---|
1503 | % feval(action,num_i1,num_i2,num_j1,num_j2,Series); |
---|
1504 | end |
---|
1505 | set(handles.RUN,'BackgroundColor',[1 0 0]) |
---|
1506 | |
---|
1507 | % %save the current interface setting as figure namefig, append .0 to the name if it already exists |
---|
1508 | % detect=1; |
---|
1509 | % while detect==1 |
---|
1510 | % namefigfull=[namedoc '.fig']; |
---|
1511 | % hh=dir(namefigfull); |
---|
1512 | % if ~isempty(hh) |
---|
1513 | % detect=1; |
---|
1514 | % namedoc=[namedoc '.0']; |
---|
1515 | % else |
---|
1516 | % detect=0; |
---|
1517 | % end |
---|
1518 | % end |
---|
1519 | % saveas(gcbf,namefigfull);%save the interface with name namefigfull (A CHANGER EN FICHIER .xml) |
---|
1520 | |
---|
1521 | %---------------------------------------------------- |
---|
1522 | function STOP_Callback(hObject, eventdata, handles) |
---|
1523 | set(handles.RUN, 'BusyAction','cancel') |
---|
1524 | set(handles.RUN,'BackgroundColor',[1 0 0]) |
---|
1525 | |
---|
1526 | %---------------------------------------------- |
---|
1527 | |
---|
1528 | %---------------------------------------------------- |
---|
1529 | function first_i_Callback(hObject, eventdata, handles) |
---|
1530 | last_i_Callback(hObject, eventdata, handles) |
---|
1531 | |
---|
1532 | %---------------------------------------------- |
---|
1533 | function last_i_Callback(hObject, eventdata, handles) |
---|
1534 | hseries=get(handles.last_i,'parent'); |
---|
1535 | first_i=str2num(get(handles.first_i,'String')); |
---|
1536 | last_i=str2num(get(handles.last_i,'String')); |
---|
1537 | ref_i=ceil((first_i+last_i)/2); |
---|
1538 | set(handles.ref_i,'String', num2str(ref_i)) |
---|
1539 | ref_i_Callback(hObject, eventdata, handles) |
---|
1540 | SeriesData=get(hseries,'UserData'); |
---|
1541 | if ~isfield(SeriesData,'Time') |
---|
1542 | SeriesData.Time{1}=[]; |
---|
1543 | end |
---|
1544 | displ_time(handles,SeriesData.Time{1}); |
---|
1545 | |
---|
1546 | %------------------------------------------------------- |
---|
1547 | function first_j_Callback(hObject, eventdata, handles) |
---|
1548 | last_j_Callback(hObject, eventdata, handles) |
---|
1549 | |
---|
1550 | %------------------------------------------------------- |
---|
1551 | function last_j_Callback(hObject, eventdata, handles) |
---|
1552 | hseries=get(handles.last_i,'parent'); |
---|
1553 | first_j=str2num(get(handles.first_j,'String')); |
---|
1554 | last_j=str2num(get(handles.last_j,'String')); |
---|
1555 | ref_j=ceil((first_j+last_j)/2); |
---|
1556 | set(handles.ref_j,'String', num2str(ref_j)) |
---|
1557 | |
---|
1558 | ref_j_Callback(hObject, eventdata, handles) |
---|
1559 | SeriesData=get(hseries,'UserData'); |
---|
1560 | if ~isfield(SeriesData,'Time') |
---|
1561 | SeriesData.Time{1}=[]; |
---|
1562 | end |
---|
1563 | displ_time(handles,SeriesData.Time{1}); |
---|
1564 | |
---|
1565 | |
---|
1566 | |
---|
1567 | |
---|
1568 | %------------------------------------------------------- |
---|
1569 | function ref_i_Callback(hObject, eventdata, handles) |
---|
1570 | mode_list=get(handles.mode,'String'); |
---|
1571 | mode_value=get(handles.mode,'Value'); |
---|
1572 | mode=mode_list{mode_value}; |
---|
1573 | hseries=get(handles.ref_i,'parent'); |
---|
1574 | SeriesData=get(hseries,'UserData'); |
---|
1575 | %NomTypeCell=get(handles.NomType,'String'); |
---|
1576 | NomTypeCell=SeriesData.NomType; |
---|
1577 | if ~isempty(NomTypeCell) |
---|
1578 | Val=get(handles.NomType,'Value'); |
---|
1579 | NomType=NomTypeCell{Val}; |
---|
1580 | % for ilist=1:length(NomType) |
---|
1581 | if isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j')|| isequal(NomType,'_i1-i2') |
---|
1582 | if isequal(mode,'series(Di)') |
---|
1583 | find_netcpair_civ(hObject, eventdata, handles,Val);% update the menu of pairs depending on the available netcdf files |
---|
1584 | % break |
---|
1585 | end |
---|
1586 | end |
---|
1587 | end |
---|
1588 | |
---|
1589 | %---------------------------------------------------- |
---|
1590 | function ref_j_Callback(hObject, eventdata, handles) |
---|
1591 | mode_list=get(handles.mode,'String'); |
---|
1592 | mode_value=get(handles.mode,'Value'); |
---|
1593 | mode=mode_list{mode_value}; |
---|
1594 | hseries=get(handles.ref_i,'parent'); |
---|
1595 | SeriesData=get(hseries,'UserData'); |
---|
1596 | %NomTypeCell=get(handles.NomType,'String'); |
---|
1597 | NomTypeCell=SeriesData.NomType; |
---|
1598 | if ~isempty(NomTypeCell) |
---|
1599 | Val=get(handles.NomType,'Value'); |
---|
1600 | NomType=NomTypeCell{Val}; |
---|
1601 | % NomType=get(handles.NomType,'String'); |
---|
1602 | if isequal(NomType,'_i_j1-j2')|| isequal(NomType,'_i1-i2_j')|| isequal(NomType,'_i1-i2') |
---|
1603 | if isequal(mode,'series(Dj)') |
---|
1604 | find_netcpair_civ(hObject, eventdata, handles,Val);% update the menu of pairs depending on the available netcdf files |
---|
1605 | % break |
---|
1606 | end |
---|
1607 | end |
---|
1608 | end |
---|
1609 | |
---|
1610 | %---------------------------------------------------- |
---|
1611 | % --- Executes on selection change in ACTION. |
---|
1612 | function ACTION_Callback(hObject, eventdata, handles) |
---|
1613 | list_ACTION=get(handles.ACTION,'String');% list menu fields |
---|
1614 | index_ACTION=get(handles.ACTION,'Value');% selected string index |
---|
1615 | ACTION= list_ACTION{index_ACTION}; % selected function name |
---|
1616 | path_series=which('series');%path to series.m |
---|
1617 | list_path=get(handles.ACTION,'UserData');%list of recorded paths to functions of the list ACTION |
---|
1618 | nb_builtin=0; |
---|
1619 | for ilist=1:length(list_path) |
---|
1620 | if isequal(list_path{ilist},path_series) |
---|
1621 | nb_builtin=nb_builtin+1; |
---|
1622 | else |
---|
1623 | break |
---|
1624 | end |
---|
1625 | end |
---|
1626 | if nb_builtin==0% the path of series has been changed, reinitialize |
---|
1627 | % series_OpeningFcn(hObject, eventdata, handles) |
---|
1628 | return |
---|
1629 | end |
---|
1630 | |
---|
1631 | % add a new function to the menu |
---|
1632 | if isequal(ACTION,'more...') |
---|
1633 | pathfct=fileparts(path_series); |
---|
1634 | browse_name=fullfile(path_series,'series');%go to UVMAT/SERIES_FCT by default |
---|
1635 | if length(list_path)>nb_builtin |
---|
1636 | browse_name=list_path{end};% initialize browser with the path of the last introduced function |
---|
1637 | end |
---|
1638 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
1639 | {'*.m', ' (*.m)'; |
---|
1640 | '*.m', '.m files '; ... |
---|
1641 | '*.*', 'All Files (*.*)'}, ... |
---|
1642 | 'Pick a file',browse_name); |
---|
1643 | if length(FileName)<2 |
---|
1644 | return |
---|
1645 | end |
---|
1646 | |
---|
1647 | |
---|
1648 | |
---|
1649 | ext_fct=FileName(end-1:end);% to be replaced by fileparts |
---|
1650 | if ~isequal(ext_fct,'.m') |
---|
1651 | msgbox_uvmat('ERROR','a Matlab function .m must be introduced'); |
---|
1652 | return |
---|
1653 | end |
---|
1654 | ACTION=FileName(1:end-2);% ACTION choice updated by the selected item |
---|
1655 | |
---|
1656 | addpath(PathName) |
---|
1657 | eval(['h_function=@' ACTION]); |
---|
1658 | if ~isequal(path_series,PathName) |
---|
1659 | rmpath(PathName) |
---|
1660 | end |
---|
1661 | functions(h_function) |
---|
1662 | |
---|
1663 | % insert the choice in the action menu |
---|
1664 | menu_str=update_menu(handles.ACTION,ACTION);%new action menu in which the new item has been appended if needed |
---|
1665 | index_ACTION=get(handles.ACTION,'Value');% currently selected index in the list |
---|
1666 | list_path{index_ACTION}=PathName; |
---|
1667 | if length(menu_str)>nb_builtin+5; |
---|
1668 | nbremove=length(menu_str)-nb_builtin-5; |
---|
1669 | menu_str(nb_builtin+1:end-5)=[]; |
---|
1670 | list_path(nb_builtin+1:end-4)=[]; |
---|
1671 | index_ACTION=index_ACTION-nbremove; |
---|
1672 | set(handles.ACTION,'Value',index_ACTION) |
---|
1673 | set(handles.ACTION,'String',menu_str) |
---|
1674 | end |
---|
1675 | list_path{index_ACTION}=PathName; |
---|
1676 | set(handles.ACTION,'UserData',list_path); |
---|
1677 | set(handles.path,'enable','inactive')% indicate that the current path is accessible (not 'off') |
---|
1678 | |
---|
1679 | %record the current menu in personal file profil_perso |
---|
1680 | dir_perso=prefdir; |
---|
1681 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
1682 | for ilist=nb_builtin+1:length(menu_str)-1 |
---|
1683 | series_fct{ilist-nb_builtin}=fullfile(list_path{ilist},[menu_str{ilist} '.m']); |
---|
1684 | end |
---|
1685 | if exist(profil_perso,'file') |
---|
1686 | save(profil_perso,'series_fct','-append') |
---|
1687 | else |
---|
1688 | txt=ver; |
---|
1689 | Release=txt(1).Release; |
---|
1690 | relnumb=str2num(Release(3:4)); |
---|
1691 | if relnumb >= 14 |
---|
1692 | save(profil_perso,'series_fct','-V6') |
---|
1693 | else |
---|
1694 | save(profil_perso, 'series_fct') |
---|
1695 | end |
---|
1696 | end |
---|
1697 | end |
---|
1698 | |
---|
1699 | %check the current path to the selected function |
---|
1700 | PathName=list_path{index_ACTION};%current recorded path |
---|
1701 | if ~isequal(path_series,PathName) |
---|
1702 | CurrentPath=fileparts(which(ACTION)); |
---|
1703 | if ~isequal(CurrentPath,PathName)&&~isequal(CurrentPath,fullfile(PathName,'private')) |
---|
1704 | addpath(PathName) |
---|
1705 | errormsg=check_functions; |
---|
1706 | msgbox_uvmat('CONFIRMATION',[['path ' PathName ' added to the current Matlab pathes'];errormsg]) |
---|
1707 | end |
---|
1708 | end |
---|
1709 | set(handles.path,'String',PathName); %show the path to the senlected function |
---|
1710 | |
---|
1711 | %default setting for the visibility of the GUI elements |
---|
1712 | %set( handles.Field,'Visible','off')%default |
---|
1713 | set(handles.RootPath,'UserData','many') |
---|
1714 | set(handles.SubDir,'Visible','on') |
---|
1715 | set(handles.RootFile,'Visible','on') |
---|
1716 | set(handles.NomType,'Visible','on') |
---|
1717 | set(handles.FileExt,'Visible','on') |
---|
1718 | set(handles.NbSlice,'Visible','off') |
---|
1719 | set(handles.NbSlice_title,'Visible','off') |
---|
1720 | set(handles.VelTypeMenu,'Visible','off'); |
---|
1721 | set(handles.VelType_text,'Visible','off'); |
---|
1722 | set(handles.VelTypeMenu_1,'Visible','off'); |
---|
1723 | set(handles.VelType_text_1,'Visible','off'); |
---|
1724 | view_FieldMenu(handles,'off') |
---|
1725 | view_FieldMenu_1(handles,'off') |
---|
1726 | view_TRANSFORM(handles,'off') |
---|
1727 | set(handles.ProjObject_frame,'Visible','off'); |
---|
1728 | set(handles.GetMask,'Visible','off') |
---|
1729 | set(handles.Mask,'Visible','off') |
---|
1730 | set(handles.GetObject,'Visible','off'); |
---|
1731 | set(handles.ProjObject,'Visible','off'); |
---|
1732 | set(handles.OutputDir,'Visible','off'); |
---|
1733 | set(handles.PARAMETERS_frame,'Visible','off'); |
---|
1734 | set(handles.PARAMETERS_title,'Visible','off'); |
---|
1735 | set(handles.ParamKey,'Visible','off') |
---|
1736 | set(handles.ParamVal,'Visible','off') |
---|
1737 | ParamKey={}; |
---|
1738 | set(handles.FieldMenu,'Enable','off') |
---|
1739 | set(handles.VelTypeMenu,'Enable','off') |
---|
1740 | set(handles.FieldMenu_1,'Enable','off') |
---|
1741 | set(handles.VelTypeMenu_1,'Enable','off') |
---|
1742 | set(handles.CoordType,'Enable','off') |
---|
1743 | %set the displayed GUI item needed for input parameters |
---|
1744 | %list_input=feval(ACTION);% input list asked by the selected function |
---|
1745 | varargout=feval(ACTION);% input list asked by the selected function |
---|
1746 | Param_list={}; |
---|
1747 | % RootPath=get(handles.RootPath,'String'); |
---|
1748 | % RootFile=get(handles.RootFile,'String'); |
---|
1749 | |
---|
1750 | %nb_series=length(RootFile); |
---|
1751 | FileExt=get(handles.FileExt,'String'); |
---|
1752 | nb_series=length(FileExt); |
---|
1753 | testima_series=1; %test for a list of images only |
---|
1754 | testima=1; |
---|
1755 | testima_1=1; |
---|
1756 | testciv_series=1; |
---|
1757 | for iview=1:nb_series |
---|
1758 | ext=FileExt{iview}; |
---|
1759 | if length(ext)<2 |
---|
1760 | ext='.none'; |
---|
1761 | end |
---|
1762 | testimaview=~isempty(imformats(ext(2:end))) || isequal(lower(ext),'.avi'); |
---|
1763 | if ~testimaview |
---|
1764 | if iview==1 |
---|
1765 | testima=0; |
---|
1766 | end |
---|
1767 | if iview==2 |
---|
1768 | testima_1=0; |
---|
1769 | end |
---|
1770 | testima_series=0; |
---|
1771 | end |
---|
1772 | end |
---|
1773 | for ilist=1:length(varargout)-1 |
---|
1774 | switch varargout{ilist} |
---|
1775 | %RootFile always visible |
---|
1776 | case 'RootPath' %visible by default |
---|
1777 | value=lower(varargout{ilist+1}); |
---|
1778 | if isequal(value,'one')||isequal(value,'two')||isequal(value,'many') |
---|
1779 | set(handles.RootFile,'UserData',value)% for use in menu Open_insert |
---|
1780 | end |
---|
1781 | case 'SubDir' %visible by default |
---|
1782 | if isequal(lower(varargout{ilist+1}),'off') |
---|
1783 | set(handles.SubDir,'Visible','off') |
---|
1784 | end |
---|
1785 | case 'RootFile' %visible by default |
---|
1786 | value=lower(varargout{ilist+1}); |
---|
1787 | if isequal(value,'off') |
---|
1788 | set(handles.RootFile,'Visible','off') |
---|
1789 | elseif isequal(value,'one')||isequal(value,'two')||isequal(value,'many') |
---|
1790 | set(handles.RootFile,'Visible','on') |
---|
1791 | set(handles.RootFile,'UserData',value)% for use in menu Open_insert |
---|
1792 | end |
---|
1793 | case 'NomType' %visible by default |
---|
1794 | if isequal(lower(varargout{ilist+1}),'off') |
---|
1795 | set(handles.NomType,'Visible','off') |
---|
1796 | end |
---|
1797 | case 'FileExt' %visible by default |
---|
1798 | if isequal(lower(varargout{ilist+1}),'off') |
---|
1799 | set(handles.FileExt,'Visible','off') |
---|
1800 | end |
---|
1801 | case 'NbSlice' %hidden by default |
---|
1802 | if isequal(lower(varargout{ilist+1}),'on') |
---|
1803 | set(handles.NbSlice,'Visible','on') |
---|
1804 | set(handles.NbSlice_title,'Visible','on') |
---|
1805 | end |
---|
1806 | case 'VelTypeMenu' %hidden by default |
---|
1807 | if isequal(lower(varargout{ilist+1}),'one') || isequal(lower(varargout{ilist+1}),'two') |
---|
1808 | set(handles.VelTypeMenu,'Enable','on') |
---|
1809 | if nb_series >=1 && ~testima_series |
---|
1810 | set(handles.VelTypeMenu,'Visible','on') |
---|
1811 | set(handles.VelType_text,'Visible','on'); |
---|
1812 | set(handles.Field_frame,'Visible','on') |
---|
1813 | end |
---|
1814 | end |
---|
1815 | if isequal(lower(varargout{ilist+1}),'two') |
---|
1816 | set(handles.VelTypeMenu_1,'Enable','on') |
---|
1817 | if nb_series >=2 && ~testima_series |
---|
1818 | set(handles.VelTypeMenu_1,'Visible','on') |
---|
1819 | set(handles.VelType_text_1,'Visible','on'); |
---|
1820 | end |
---|
1821 | end |
---|
1822 | case 'FieldMenu' %hidden by default |
---|
1823 | if isequal(lower(varargout{ilist+1}),'one')||isequal(lower(varargout{ilist+1}),'two') |
---|
1824 | set(handles.FieldMenu,'Enable','on') % test for MenuBorser |
---|
1825 | if nb_series >=1 && ~testima_series |
---|
1826 | view_FieldMenu(handles,'on') |
---|
1827 | end |
---|
1828 | end |
---|
1829 | if isequal(lower(varargout{ilist+1}),'two') |
---|
1830 | set(handles.FieldMenu_1,'Enable','on') |
---|
1831 | if nb_series >=2 && ~testima_1 |
---|
1832 | view_FieldMenu_1(handles,'on') |
---|
1833 | end |
---|
1834 | end |
---|
1835 | case 'CoordType' %hidden by default |
---|
1836 | if isequal(lower(varargout{ilist+1}),'on') |
---|
1837 | set(handles.CoordType,'Enable','on') |
---|
1838 | view_TRANSFORM(handles,'on') |
---|
1839 | end |
---|
1840 | case 'GetObject' %hidden by default |
---|
1841 | if isequal(lower(varargout{ilist+1}),'on') |
---|
1842 | set(handles.ProjObject_frame,'Visible','on') |
---|
1843 | set(handles.GetObject,'Visible','on'); |
---|
1844 | end |
---|
1845 | case 'Mask' %hidden by default |
---|
1846 | if isequal(lower(varargout{ilist+1}),'on') |
---|
1847 | set(handles.ProjObject_frame,'Visible','on') |
---|
1848 | set(handles.GetMask,'Visible','on'); |
---|
1849 | end |
---|
1850 | case 'PARAMETER' |
---|
1851 | set(handles.PARAMETERS_frame,'Visible','on') |
---|
1852 | set(handles.PARAMETERS_title,'Visible','on') |
---|
1853 | set(handles.ParamKey,'Visible','on') |
---|
1854 | %set(handles.ParamVal,'Visible','on') |
---|
1855 | Param_str=varargout{ilist+1}; |
---|
1856 | Param_list=[Param_list; {Param_str}]; |
---|
1857 | end |
---|
1858 | end |
---|
1859 | if ~isempty(Param_list) |
---|
1860 | set(handles.ParamKey,'String',Param_list) |
---|
1861 | set(handles.ParamVal,'Visible','on') |
---|
1862 | end |
---|
1863 | |
---|
1864 | %------------------------------------------------------------------- |
---|
1865 | % --- Executes on selection change in FieldMenu. |
---|
1866 | %------------------------------------------------------------------- |
---|
1867 | function FieldMenu_Callback(hObject, eventdata, handles) |
---|
1868 | |
---|
1869 | field_str=get(handles.FieldMenu,'String'); |
---|
1870 | field_index=get(handles.FieldMenu,'Value'); |
---|
1871 | field=field_str{field_index(1)}; |
---|
1872 | if isequal(field,'get_field...') |
---|
1873 | hget_field=findobj(allchild(0),'name','get_field'); |
---|
1874 | if ~isempty(hget_field) |
---|
1875 | delete(hget_field)%delete opened versions of get_field |
---|
1876 | end |
---|
1877 | hseries=get(handles.FieldMenu,'parent'); |
---|
1878 | SeriesData=get(hseries,'UserData'); |
---|
1879 | filename=SeriesData.CurrentInputFile; |
---|
1880 | if exist(filename,'file') |
---|
1881 | get_field(filename) |
---|
1882 | end |
---|
1883 | elseif isequal(field,'more...') |
---|
1884 | str=calc_field; |
---|
1885 | [ind_answer,v] = listdlg('PromptString','Select a file:',... |
---|
1886 | 'SelectionMode','single',... |
---|
1887 | 'ListString',str); |
---|
1888 | % edit the choice in the fields and action menu |
---|
1889 | scalar=cell2mat(str(ind_answer)); |
---|
1890 | update_menu(handles.FieldMenu,scalar) |
---|
1891 | end |
---|
1892 | |
---|
1893 | %------------------------------------------------------ |
---|
1894 | % --- Executes on selection change in FieldMenu_1. |
---|
1895 | %----------------------------------------------------- |
---|
1896 | function FieldMenu_1_Callback(hObject, eventdata, handles) |
---|
1897 | field_str=get(handles.FieldMenu_1,'String'); |
---|
1898 | field_index=get(handles.FieldMenu_1,'Value'); |
---|
1899 | field=field_str{field_index}; |
---|
1900 | if isequal(field,'get_field...') |
---|
1901 | hget_field=findobj(allchild(0),'name','get_field_1'); |
---|
1902 | if ~isempty(hget_field) |
---|
1903 | delete(hget_field) |
---|
1904 | end |
---|
1905 | hseries=get(handles.FieldMenu,'parent'); |
---|
1906 | SeriesData=get(hseries,'UserData'); |
---|
1907 | filename=SeriesData.CurrentInputFile_1; |
---|
1908 | if exist(filename,'file') |
---|
1909 | hget_field=get_field(filename); |
---|
1910 | set(hget_field,'name','get_field_1') |
---|
1911 | end |
---|
1912 | elseif isequal(field,'more...') |
---|
1913 | str=calc_field; |
---|
1914 | [ind_answer,v] = listdlg('PromptString','Select a file:',... |
---|
1915 | 'SelectionMode','single',... |
---|
1916 | 'ListString',str); |
---|
1917 | % edit the choice in the fields and action menu |
---|
1918 | scalar=cell2mat(str(ind_answer)); |
---|
1919 | update_menu(handles.FieldMenu_1,scalar) |
---|
1920 | end |
---|
1921 | % %---------------------------------------------------------------------- |
---|
1922 | % % --makes a time averaged velocity field |
---|
1923 | % %---------------------------------------------------------------------- |
---|
1924 | % function aver_vel(num_i1,num_i2,num_j1,num_j2,Series) |
---|
1925 | % %handles of the GUI series |
---|
1926 | % |
---|
1927 | % hseries=guidata(Series.hseries);%handles of the GUI series |
---|
1928 | % WaitbarPos=get(hseries.waitbar_frame,'Position'); |
---|
1929 | % Field_list=get(hseries.FieldMenu,'String'); |
---|
1930 | % val=get(hseries.FieldMenu,'Value'); |
---|
1931 | % FieldName=Field_list{val(1)}; |
---|
1932 | % set(hseries.FieldMenu,'Value',val(1))% select only one input field |
---|
1933 | % if isequal(FieldName,'get_field...') |
---|
1934 | % hget_field=findobj(allchild(0),'Name','get_field');%find the get_field... GUI |
---|
1935 | % end |
---|
1936 | % %root input file and type |
---|
1937 | % RootPath=get(hseries.RootPath,'String'); |
---|
1938 | % SubDir=get(hseries.SubDir,'String'); |
---|
1939 | % RootFile=get(hseries.RootFile,'String'); |
---|
1940 | % %NomType=get(hseries.NomType,'String'); |
---|
1941 | % NomType=Series.NomType; |
---|
1942 | % FileExt=get(hseries.FileExt,'String'); |
---|
1943 | % ext=FileExt{1}; |
---|
1944 | % VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
1945 | % VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
1946 | % VelType{1}=VelType_str{VelType_val}; |
---|
1947 | % |
---|
1948 | % time=0; %default |
---|
1949 | % % number of slices |
---|
1950 | % NbSlice=str2num(get(hseries.NbSlice,'String')); |
---|
1951 | % if isempty(NbSlice) |
---|
1952 | % NbSlice=1; |
---|
1953 | % end |
---|
1954 | % NbSlice_name=num2str(NbSlice); |
---|
1955 | % filebase=fullfile(RootPath{1},RootFile{1}); |
---|
1956 | % Calib=[]; |
---|
1957 | % if exist([filebase '.xml'],'file') |
---|
1958 | % %[error,Heading,nom_type_read,ext_ima_read,time_imadoc,TimeUnit,mode,NbSlice,npx,npy,Calib]=read_imadoc([filebase '.xml']); |
---|
1959 | % [XmlData,warntext]=imadoc2struct([filebase '.xml']); |
---|
1960 | % end |
---|
1961 | % if NbSlice==1 |
---|
1962 | % filebase_mean=[filebase '_mean']; %root name for the result |
---|
1963 | % else |
---|
1964 | % filebase_mean=[filebase '_' NbSlice_name 'mean']; %root name for the results |
---|
1965 | % answeryes=questdlg({['will make average in ' num2str(NbSlice) ' slices'];['results stored as files ' filebase_mean ' ...']}); |
---|
1966 | % if ~isequal(answeryes,'Yes') |
---|
1967 | % return |
---|
1968 | % end |
---|
1969 | % end |
---|
1970 | % siz=size(num_i1); |
---|
1971 | % nbfield2=siz(1); %nb of consecutive fields at each level(burst) |
---|
1972 | % lengthtot=siz(1)*siz(2); |
---|
1973 | % nbfield=floor(lengthtot/(nbfield2*NbSlice));%total number of i indexes (adjusted to an integer number of slices) |
---|
1974 | % nbfield_slice=nbfield*nbfield2;% number of fields per slice |
---|
1975 | % %projection object |
---|
1976 | % GridX=[]; |
---|
1977 | % GridY=[]; |
---|
1978 | % if isfield(Series,'sethandles') |
---|
1979 | % Series.ProjObject=read_set_object(Series.sethandles); |
---|
1980 | % if isfield(Series.ProjObject,'Style') |
---|
1981 | % answeryes=questdlg({['statistics on field series projected on ' Series.ProjObject.Style]}); |
---|
1982 | % if ~isequal(answeryes,'Yes') |
---|
1983 | % return |
---|
1984 | % end |
---|
1985 | % end |
---|
1986 | % end |
---|
1987 | % |
---|
1988 | % %LOOP ON SLICES |
---|
1989 | % for i_slice=1:NbSlice |
---|
1990 | % %select the series of image indices at the level islice |
---|
1991 | % for ifield=1:nbfield |
---|
1992 | % indselect(:,ifield)=((ifield-1)*NbSlice+(i_slice-1))*nbfield2+[1:nbfield2]';%selected indices on the list of files of a slice |
---|
1993 | % end |
---|
1994 | % %name of result file |
---|
1995 | % [filemean,idetect]=... |
---|
1996 | % name_generator(filebase_mean,num_i1(i_slice),num_j1(1),Series.FileExt{1},'_i1-i2_j1-j2',1,num_i2(i_slice+nbfield_slice*NbSlice-1),num_j2(end),Series.SubDir{1}); |
---|
1997 | % |
---|
1998 | % % field=get(handles.civ1,'UserData');%read current selected field type (civ1,civ2...) |
---|
1999 | % itime=0; |
---|
2000 | % dt=[]; |
---|
2001 | % %LOOP ON FIELDS IN A SLICE |
---|
2002 | % test_interpolate=0;%default |
---|
2003 | % for index=1:nbfield*nbfield2 |
---|
2004 | % ifile=indselect(index); |
---|
2005 | % stopstate=get(hseries.RUN,'BusyAction'); |
---|
2006 | % if isequal(stopstate,'queue')% enable STOP command |
---|
2007 | % update_waitbar(hseries.waitbar,WaitbarPos,ifile/(nbfield*nbfield2)) |
---|
2008 | % %name of the current file |
---|
2009 | % [filename,idetect]=name_generator(filebase,num_i1(ifile),num_j1(ifile),Series.FileExt{1},Series.NomType{1},1,num_i2(ifile),num_j2(ifile),Series.SubDir{1}); |
---|
2010 | % %read input file |
---|
2011 | % itime=itime+1; |
---|
2012 | % if isequal(FieldName,'get_field...') |
---|
2013 | % hhget_field=guidata(hget_field);%handles of GUI elements in get_field |
---|
2014 | % hObject=0; |
---|
2015 | % eventdata=0; |
---|
2016 | % SubField=get_field('read_var_names',hObject,eventdata,hhget_field); %read the names of the variables to plot in the get_field GUI |
---|
2017 | % [Data,var_detect]=nc2struct(filename,SubField.ListVarName); %read input data |
---|
2018 | % time(itime)=itime; |
---|
2019 | % dt=1; |
---|
2020 | % Calib_read=[]; |
---|
2021 | % else |
---|
2022 | % [nb_coord,nb_dim,Civ,CivStage,timeread,Data,VelTypeOut,Calib_read]=read_ncfield(filename,VelType{1});%reading the first file |
---|
2023 | % time(itime)=timeread; |
---|
2024 | % if isequal(Civ,1) |
---|
2025 | % Data.CoordType='px';%test for pixel coordinates |
---|
2026 | % if isequal(itime,1) |
---|
2027 | % dt=Data.dt; |
---|
2028 | % elseif ~isequal(Data.dt,dt) |
---|
2029 | % warndlg_uvmat('series with non constant dt, need phys coordinates','ERROR') |
---|
2030 | % return |
---|
2031 | % end |
---|
2032 | % end |
---|
2033 | % end |
---|
2034 | % %increment the detected fields, skip the others |
---|
2035 | % if idetect==0 |
---|
2036 | % warndlg_uvmat(['input file ' filename ' not found'],'ERROR') |
---|
2037 | % %A FAIRE STOCKER LE RESULT ACTUEL S'IL EXISTE |
---|
2038 | % end |
---|
2039 | % % itime=itime+1; |
---|
2040 | % % time(itime)=timeread; |
---|
2041 | % |
---|
2042 | % %coordinate transform |
---|
2043 | % if isempty(Calib) |
---|
2044 | % Calib=Calib_read;%use Calib from xml file in priority, then Calib from the current file |
---|
2045 | % end |
---|
2046 | % if ~isequal(Series.CoordType,'') |
---|
2047 | % Data=feval(Series.CoordType,Data,Calib); |
---|
2048 | % end |
---|
2049 | % %projection on object if defined |
---|
2050 | % if isfield(Series,'ProjObject'); |
---|
2051 | % Data=proj_field(Data,Series.ProjObject); |
---|
2052 | % if isequal(itime,1)%use the positions on the first field for the whole series, ou utiliser grille |
---|
2053 | % if isfield(Data,'Txt')%display error message |
---|
2054 | % warndlg(Data.Txt,'ERROR') |
---|
2055 | % return |
---|
2056 | % end |
---|
2057 | % end |
---|
2058 | % else%remove false vectors and interpolate on the positions of the first field |
---|
2059 | % Data=document_field(Data); |
---|
2060 | % Data.Style='plane'; |
---|
2061 | % end |
---|
2062 | % %%%%%%%%% initiate the average at the first iteration: check list and structure of variables |
---|
2063 | % if ifile==i_slice%first field in the slice |
---|
2064 | % testfalse=0; |
---|
2065 | % ListIndex={}; |
---|
2066 | % testnewcell=1; |
---|
2067 | % %group the variables (fields of 'Data') in cells of variables with the same dimensions |
---|
2068 | % [DimVarIndex,CellVarIndex]=find_field_indices(Data); |
---|
2069 | % VarIndex=CellVarIndex{1}; % ONLY THE FIRST VAR GROUP IS AVERAGED |
---|
2070 | % DimIndex=Data.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell) |
---|
2071 | % MeanData=Data;%transfer heading |
---|
2072 | % MeanData.Time=[time(1) time(end)]; |
---|
2073 | % MeanData.Action=Series.Action;%name of the processing programme |
---|
2074 | % MeanData.ListDimName=Data.ListDimName(DimIndex);%name of dimension |
---|
2075 | % MeanData.DimValue=Data.DimValue(DimIndex);%values of dimension (nbre of vectors) |
---|
2076 | % MeanData.ListVarName=Data.ListVarName; |
---|
2077 | % MeanData.VarDimIndex=Data.VarDimIndex; |
---|
2078 | % MeanData.ListVarAttribute={'Role'};%list of variable attribute names A FAIRE: transferer les autres attributs |
---|
2079 | % testsum=ones(size(VarIndex)); |
---|
2080 | % indexfalse=0; |
---|
2081 | % CoordName={}; |
---|
2082 | % indexremove=[]; |
---|
2083 | % if isfield(Data,'Role') % look for coordinate and flag variables |
---|
2084 | % for ivar=1:length(VarIndex) |
---|
2085 | % VarName=Data.ListVarName{VarIndex(ivar)}; |
---|
2086 | % var_role=Data.Role{VarIndex(ivar)};%'role' of the variable |
---|
2087 | % MeanData.Role{ivar}=var_role; |
---|
2088 | % if isequal(var_role,'falseflag') |
---|
2089 | % indexfalse=ivar; %test for false flag |
---|
2090 | % indexremove=ivar; |
---|
2091 | % FFName=VarName; |
---|
2092 | % testsum(ivar)=0; |
---|
2093 | % eval(['MeanData=rmfield(MeanData,''' VarName ''');']);%remove variable |
---|
2094 | % end |
---|
2095 | % if isequal(var_role,'warnflag') |
---|
2096 | % testsum(ivar)=0; %do not sum warn flag |
---|
2097 | % eval(['MeanData=rmfield(MeanData,''' VarName ''');']);%remove variable |
---|
2098 | % indexremove=[indexremove ivar]; |
---|
2099 | % end |
---|
2100 | % if isequal(var_role,'coord_x')| isequal(var_role,'coord_y')|isequal(var_role,'coord_z') |
---|
2101 | % eval(['MeanData.' VarName '=Data.' VarName ';']); |
---|
2102 | % testsum(ivar)=0; |
---|
2103 | % eval(['CoordName=[CoordName ''' VarName '''];']); |
---|
2104 | % end |
---|
2105 | % if testsum(ivar)~=0 |
---|
2106 | % eval(['MeanData.' VarName '=zeros(size(Data.' VarName '));']);%initialise sum |
---|
2107 | % end |
---|
2108 | % end |
---|
2109 | % end |
---|
2110 | % findsum=find(testsum); |
---|
2111 | % VarIndexSum=VarIndex(findsum);%indices of variables to sum (not coordinates nor flags) |
---|
2112 | % if length(CoordName)==0 |
---|
2113 | % if isempty(DimVarIndex)|isequal(DimVarIndex,0)% no coordinate variable for structured coordinates, prepare histograms |
---|
2114 | % for ilist=1:length(VarIndexSum) |
---|
2115 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
2116 | % eval(['MeanData=rmfield(MeanData,''' VarName ''');']);%remove variable |
---|
2117 | % indexremove=[indexremove ilist]; |
---|
2118 | % eval(['[MeanData.' VarName 'hist,MeanData.' VarName 'val]=hist(Data.' VarName ',100);']);%make histo |
---|
2119 | % eval(['sizhist=size(MeanData.' VarName 'hist);']) |
---|
2120 | % if sizhist(1)==1 |
---|
2121 | % eval(['MeanData.' VarName 'hist=MeanData.' VarName 'hist'';']) |
---|
2122 | % end |
---|
2123 | % eval(['maxval=max(MeanData.' VarName 'val);']); |
---|
2124 | % eval(['minval=min(MeanData.' VarName 'val);']); |
---|
2125 | % dC(ilist)=(maxval-minval)/100;%size of the histogram bin |
---|
2126 | % end |
---|
2127 | % else |
---|
2128 | % % icoord=0; |
---|
2129 | % % for ilist=1:length(DimVarIndex) |
---|
2130 | % % VarDim=Data.ListVarName{DimVarIndex(ilist)}; |
---|
2131 | % % icoord=icoord+1; |
---|
2132 | % % % eval(['Coord{' num2str(icord) '}=[' CoordName ''' VarName ''']']); |
---|
2133 | % % %eval(['Data.' CoordName{icoord} '=Data.' CoordName{icoord} '(indsel);']); |
---|
2134 | % % end |
---|
2135 | % end |
---|
2136 | % end |
---|
2137 | % if ~isempty(indexremove) |
---|
2138 | % MeanData.ListVarName(VarIndex(indexremove))=[]; |
---|
2139 | % MeanData.VarDimIndex(VarIndex(indexremove))=[]; |
---|
2140 | % if isfield(MeanData,'Role')%generaliser aus autres attributs |
---|
2141 | % MeanData.Role(VarIndex(indexremove))=[]; |
---|
2142 | % end |
---|
2143 | % end |
---|
2144 | % % END OF INITIALISATION |
---|
2145 | % |
---|
2146 | % end |
---|
2147 | % |
---|
2148 | % % A FAIRE: regular grid if coord_x undefined |
---|
2149 | % if indexfalse~=0 %suppress false data |
---|
2150 | % eval(['testexist=isfield(Data,''' FFName ''');']) |
---|
2151 | % if testexist |
---|
2152 | % eval(['indsel=find(Data.' FFName '==0);']); |
---|
2153 | % for icoord=1:length(CoordName) |
---|
2154 | % eval(['Data.' CoordName{icoord} '=Data.' CoordName{icoord} '(indsel);']); |
---|
2155 | % end |
---|
2156 | % end |
---|
2157 | % end |
---|
2158 | % for ilist=1:length(VarIndexSum) |
---|
2159 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
2160 | % if indexfalse~=0 & testexist |
---|
2161 | % eval(['Data.' VarName '=Data.' VarName '(indsel);']); |
---|
2162 | % end |
---|
2163 | % if length(CoordName)==0%no variable use dfor unstructured coordinates |
---|
2164 | % if isempty(DimVarIndex)|isequal(DimVarIndex,0)% no coordinate variable for structured coordinates |
---|
2165 | % % %update histogram with the current field #ifile |
---|
2166 | % str_left=['[MeanData.' VarName 'val,MeanData.' VarName 'hist]=']; |
---|
2167 | % str_right=['hist_update(MeanData.' VarName 'val,MeanData.' VarName 'hist,Data.' VarName ',dC(ilist));']; |
---|
2168 | % eval([str_left str_right]);%update global histo |
---|
2169 | % else |
---|
2170 | % %INTERPOLER |
---|
2171 | % |
---|
2172 | % eval(['MeanData.' VarName '=MeanData.' VarName '+Data.' VarName ';']);%increment sum%CAS x,y change |
---|
2173 | % end |
---|
2174 | % else |
---|
2175 | % if length(CoordName)==2 |
---|
2176 | % eval(['test_interp= ~isequal(Data.' CoordName{1} ',MeanData.' CoordName{1} ... |
---|
2177 | % ')|~isequal(Data.' CoordName{2} ',MeanData.' CoordName{2} ');']) |
---|
2178 | % if test_interp |
---|
2179 | % eval(['Data.' VarName '=griddata_uvmat(Data.' CoordName{1} ',Data.' CoordName{2}... |
---|
2180 | % ',Data.' VarName ',MeanData.' CoordName{1} ',MeanData.' CoordName{2} ');']); |
---|
2181 | % test_interpolate=1; |
---|
2182 | % end |
---|
2183 | % end |
---|
2184 | % eval(['MeanData.' VarName '=MeanData.' VarName '+Data.' VarName ';']);%increment sum |
---|
2185 | % end |
---|
2186 | % end |
---|
2187 | % end |
---|
2188 | % end |
---|
2189 | % if length(CoordName)~=0 | ~isequal(DimVarIndex,0)% no coordinate variable for structured coordinates |
---|
2190 | % for ilist=1:length(VarIndexSum) |
---|
2191 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
2192 | % eval(['MeanData.' VarName '=MeanData.' VarName '/itime;']);%normalize sum by the number of fields |
---|
2193 | % end |
---|
2194 | % else |
---|
2195 | % MeanData.NbDim=1; |
---|
2196 | % MeanData.ListDimName={}; |
---|
2197 | % MeanData.DimValue=[]; |
---|
2198 | % for ilist=1:length(VarIndexSum) |
---|
2199 | % VarName=Data.ListVarName{VarIndexSum(ilist)}; |
---|
2200 | % MeanData.ListVarName=[MeanData.ListVarName {[VarName 'val']} {[VarName 'hist']}]; |
---|
2201 | % MeanData.VarDimIndex=[MeanData.VarDimIndex {[ilist]} {[ilist]}]; |
---|
2202 | % MeanData.ListDimName=[MeanData.ListDimName {[VarName 'val']}]; |
---|
2203 | % eval(['MeanData.DimValue=[MeanData.DimValue length(MeanData.' VarName 'val)];']); |
---|
2204 | % end |
---|
2205 | % end |
---|
2206 | % figure |
---|
2207 | % haxes=axes; |
---|
2208 | % plot_field(MeanData,haxes)%plot the resulting average |
---|
2209 | % % change variable names for consitency with civ1 data (need to generalize these programs) |
---|
2210 | % if length(MeanData.ListVarName) >= 4 & isequal(MeanData.ListVarName(1:4), {'X' 'Y' 'U' 'V'}) |
---|
2211 | % MeanData.ListGlobalAttribute={'nb_coord','nb_dim','dt','absolut_time_T0','pixcmx','pixcmy','hart','civ','fix'}; |
---|
2212 | % MeanData.nb_coord=2; |
---|
2213 | % MeanData.nb_dim=2; |
---|
2214 | % MeanData.dt=1; |
---|
2215 | % MeanData.absolut_time_T0=0; |
---|
2216 | % MeanData.pixcmx=1; %pix per cm (1 by default) |
---|
2217 | % MeanData.pixcmy=1; %pix per cm (1 by default) |
---|
2218 | % MeanData.hart=0; |
---|
2219 | % if isequal(Data.CoordType,'px') |
---|
2220 | % MeanData.civ=1; |
---|
2221 | % else |
---|
2222 | % MeanData.civ=0; |
---|
2223 | % end |
---|
2224 | % MeanData.fix=0; |
---|
2225 | % MeanData.ListVarName(1:4)={'vec_X' 'vec_Y' 'vec_U' 'vec_V'}; |
---|
2226 | % MeanData.vec_X=MeanData.X; |
---|
2227 | % MeanData.vec_Y=MeanData.Y; |
---|
2228 | % MeanData.vec_U=MeanData.U; |
---|
2229 | % MeanData.vec_V=MeanData.V; |
---|
2230 | % end |
---|
2231 | % error=struct2nc(filemean,MeanData); %save result file |
---|
2232 | % if isequal(error,0) |
---|
2233 | % if test_interpolate |
---|
2234 | % 'fields interpolated to the positions of the first one' |
---|
2235 | % end |
---|
2236 | % [filemean ' written'] |
---|
2237 | % else |
---|
2238 | % warndlg_uvmat(error,'ERROR') |
---|
2239 | % end |
---|
2240 | % end |
---|
2241 | |
---|
2242 | %---------------------------------------------------------------------- |
---|
2243 | % --project fields on a projection object (e. g. a regular grid), possibly |
---|
2244 | % merge several fields |
---|
2245 | %---------------------------------------------------------------------- |
---|
2246 | %INPUT: |
---|
2247 | %num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
2248 | %num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ) |
---|
2249 | %num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ ) |
---|
2250 | %num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ) |
---|
2251 | %OTHER INPUTS given by the structure Series |
---|
2252 | function GUI_input=merge_proj(num_i1,num_i2,num_j1,num_j2,Series); |
---|
2253 | |
---|
2254 | %requests for the visibility of input windows in the GUI series (activated directly by the selection in the menu ACTION) |
---|
2255 | if ~exist('num_i1','var') |
---|
2256 | GUI_input={'RootPath';'two';...%nbre of possible input series (options 'on'/'two'/'many', default:'one') |
---|
2257 | 'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default) |
---|
2258 | 'RootFile';'on';... %root input file name ('on' by default) |
---|
2259 | 'FileExt';'on';... %input file extension ('on' by default) |
---|
2260 | 'NomType';'on';...%type of file indexing ('on' by default) |
---|
2261 | 'NbSlice';'on'; ...%nbre of slices ('off' by default) |
---|
2262 | 'VelTypeMenu';'one';...% menu for selecting the velocity type (civ1,..) options 'off'/'one'/'two', 'off' by default) |
---|
2263 | 'FieldMenu';'one';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
2264 | 'CoordType';'on';...%can use a transform function 'off' by default |
---|
2265 | 'GetObject';'on';...%can use projection object ,'off' by default |
---|
2266 | %'GetMask';'on'...%can use mask option ,'off' by default |
---|
2267 | %'PARAMETER'; options: name of the user defined parameter',repeat a line for each parameter |
---|
2268 | ''}; |
---|
2269 | return %exit the function |
---|
2270 | end |
---|
2271 | |
---|
2272 | %------------------------------------------------- |
---|
2273 | hseries=guidata(Series.hseries);%handles of the GUI series |
---|
2274 | WaitbarPos=get(hseries.waitbar_frame,'Position'); %positiopn of waitbar frame |
---|
2275 | %------------------------------------------------- |
---|
2276 | |
---|
2277 | %numbers of view fields (nbre of inputs in RootPath) |
---|
2278 | testcell=iscell(Series.RootFile); |
---|
2279 | if ~testcell |
---|
2280 | Series.RootPath={Series.RootPath}; |
---|
2281 | Series.RootFile={Series.RootFile}; |
---|
2282 | Series.SubDir={Series.SubDir}; |
---|
2283 | Series.FileExt={Series.FileExt}; |
---|
2284 | Series.NomType={Series.NomType}; |
---|
2285 | num_i1={num_i1}; |
---|
2286 | num_i2={num_i2}; |
---|
2287 | num_j1={num_j1}; |
---|
2288 | num_j2={num_j2}; |
---|
2289 | end |
---|
2290 | nbview=length(Series.RootFile);%number of views (file series to merge) |
---|
2291 | nbfield=size(num_i1{1},1)*size(num_i1{1},2);%number of fields in the time series |
---|
2292 | transform=Series.CoordType; % field transform function |
---|
2293 | hhh=which('mmreader'); |
---|
2294 | for iview=1:nbview |
---|
2295 | test_movie(iview)=0; |
---|
2296 | if ~isequal(hhh,'')&& mmreader.isPlatformSupported() |
---|
2297 | if isequal(lower(FileExt{iview}),'.avi') |
---|
2298 | MovieObject{iview}=mmreader(fullfile(RootPath{iview},[RootFile{iview} FileExt{iview}])); |
---|
2299 | test_movie(iview)=1; |
---|
2300 | end |
---|
2301 | end |
---|
2302 | end |
---|
2303 | |
---|
2304 | %Calibration data and timing: read the ImaDoc files |
---|
2305 | mode=''; %default |
---|
2306 | timecell={}; |
---|
2307 | itime=0; |
---|
2308 | NbSlice_calib={}; %test for z index |
---|
2309 | for iview=1:nbview%Loop on views |
---|
2310 | XmlData{iview}=[];%default |
---|
2311 | filebase{iview}=fullfile(Series.RootPath{iview},Series.RootFile{iview}); |
---|
2312 | if exist([filebase{iview} '.xml'],'file') |
---|
2313 | [XmlData{iview},error]=imadoc2struct([filebase{iview} '.xml']); |
---|
2314 | if isfield(XmlData{iview},'Time') |
---|
2315 | itime=itime+1; |
---|
2316 | timecell{itime}=XmlData{iview}.Time; |
---|
2317 | end |
---|
2318 | if isfield(XmlData{iview},'GeometryCalib') && isfield(XmlData{iview}.GeometryCalib,'SliceCoord') |
---|
2319 | NbSlice_calib{iview}=size(XmlData{iview}.GeometryCalib.SliceCoord,1); |
---|
2320 | if ~isequal(NbSlice_calib{iview},NbSlice_calib{1}) |
---|
2321 | msgbox_uvmat('WARNING','inconsistent number of Z indices for the two field series'); |
---|
2322 | end |
---|
2323 | end |
---|
2324 | elseif exist([filebase{iview} '.civ'],'file') |
---|
2325 | [error,time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([filebase{iview} '.civ']); |
---|
2326 | itime=itime+1; |
---|
2327 | timecell{itime}=time; |
---|
2328 | XmlData{iview}.Time=time; |
---|
2329 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0]; |
---|
2330 | GeometryCalib.Tx=0; |
---|
2331 | GeometryCalib.Ty=0; |
---|
2332 | GeometryCalib.Tz=1; |
---|
2333 | GeometryCalib.dpx=1; |
---|
2334 | GeometryCalib.dpy=1; |
---|
2335 | GeometryCalib.sx=1; |
---|
2336 | GeometryCalib.Cx=0; |
---|
2337 | GeometryCalib.Cy=0; |
---|
2338 | GeometryCalib.f=1; |
---|
2339 | GeometryCalib.kappa1=0; |
---|
2340 | GeometryCalib.CoordUnit='cm'; |
---|
2341 | XmlData{iview}.GeometryCalib=GeometryCalib; |
---|
2342 | if error==1 |
---|
2343 | msgbox_uvmat('WARNING','inconsistent number of fields in the .civ file'); |
---|
2344 | end |
---|
2345 | end |
---|
2346 | end |
---|
2347 | |
---|
2348 | %check coincidence in time |
---|
2349 | multitime=0; |
---|
2350 | if length(timecell)==0 |
---|
2351 | time=[]; |
---|
2352 | elseif length(timecell)==1 |
---|
2353 | time=timecell{1}; |
---|
2354 | elseif length(timecell)>1 |
---|
2355 | multitime=1; |
---|
2356 | for icell=1:length(timecell) |
---|
2357 | if ~isequal(size(timecell{icell}),size(timecell{1})) |
---|
2358 | msgbox_uvmat('WARNING','inconsistent time array dimensions in ImaDoc fields, the time for the first series is used') |
---|
2359 | time=timecell{1}; |
---|
2360 | multitime=0; |
---|
2361 | break |
---|
2362 | end |
---|
2363 | end |
---|
2364 | end |
---|
2365 | if multitime |
---|
2366 | for icell=1:length(timecell) |
---|
2367 | time(icell,:,:)=timecell{icell}; |
---|
2368 | end |
---|
2369 | diff_time=max(max(diff(time))); |
---|
2370 | if diff_time>0 |
---|
2371 | msgbox_uvmat('WARNING',['times of series differ by more than ' num2str(diff_time)]) |
---|
2372 | end |
---|
2373 | end |
---|
2374 | if size(time,2) < num_i2{1}(end) || size(time,3) < num_j2{1}(end)% ime array absent or too short in ImaDoc xml file' |
---|
2375 | time=[]; |
---|
2376 | end |
---|
2377 | |
---|
2378 | % Field and velocity type (the same for all views) |
---|
2379 | Field_str=get(hseries.FieldMenu,'String'); |
---|
2380 | val=get(hseries.FieldMenu,'Value'); |
---|
2381 | FieldName=Field_str(val);%the same set of fields for all views |
---|
2382 | VelType_str=get(hseries.VelTypeMenu,'String'); |
---|
2383 | VelType_val=get(hseries.VelTypeMenu,'Value'); |
---|
2384 | VelType=VelType_str{VelType_val}; %the same for all views |
---|
2385 | if isequal(FieldName,'get_field...') |
---|
2386 | hget_field=findobj(allchild(0),'Name','get_field');%find the get_field... GUI |
---|
2387 | % hhget_field=guidata(hget_field);%handles of GUI elements in get_field |
---|
2388 | SubField=get_field('read_get_field',hObject,eventdata,hget_field); %read the names of the variables to plot in the get_field GUI |
---|
2389 | % if isequal(get(hhget_field.menu_coord,'Visible'),'on') |
---|
2390 | % list_transform=get(hhget_field.menu_coord,'String'); |
---|
2391 | % val_list=get(hhget_field.menu_coord,'Value'); |
---|
2392 | % transform=list_transform{val_list}; |
---|
2393 | % end |
---|
2394 | end |
---|
2395 | %detect whether all the files are 'images' or 'netcdf' |
---|
2396 | testima=0; |
---|
2397 | testvol=0; |
---|
2398 | testcivx=0; |
---|
2399 | testnc=0; |
---|
2400 | FileExt=get(hseries.FileExt,'String'); |
---|
2401 | for iview=1:nbview |
---|
2402 | ext=FileExt{iview}; |
---|
2403 | form=imformats(ext([2:end])); |
---|
2404 | if isequal(lower(ext),'.vol') |
---|
2405 | testvol=testvol+1; |
---|
2406 | elseif ~isempty(form)||isequal(lower(ext),'.avi')% if the extension corresponds to an image format recognized by Matlab |
---|
2407 | testima=testima+1; |
---|
2408 | elseif isequal(ext,'.nc') |
---|
2409 | testnc=testnc+1; |
---|
2410 | end |
---|
2411 | end |
---|
2412 | if testvol |
---|
2413 | msgbox_uvmat('ERROR','volume images not implemented yet') |
---|
2414 | return |
---|
2415 | end |
---|
2416 | if testnc~=nbview && testima~=nbview && testvol~=nbview |
---|
2417 | msgbox_uvmat('ERROR','need a set of images or a set of netcdf files with the same fields as input') |
---|
2418 | return |
---|
2419 | end |
---|
2420 | if ~isequal(FieldName,'get_field...') |
---|
2421 | testcivx=testnc; |
---|
2422 | end |
---|
2423 | %name of output files and directory: |
---|
2424 | % res_subdir=fullfile(Series.RootPath{1},[Series.SubDir{1} '_STAT']); |
---|
2425 | ProjectDir=fileparts(fileparts(Series.RootPath{1}));% preoject directory (GERK) |
---|
2426 | prompt={['result directory (in' ProjectDir ')']}; |
---|
2427 | RootPath=get(hseries.RootPath,'String'); |
---|
2428 | SubDir=get(hseries.SubDir,'String'); |
---|
2429 | if isequal(length(RootPath),1) |
---|
2430 | fulldir=RootPath{1}; |
---|
2431 | subdir='GRID'; |
---|
2432 | res_subdir=fullfile(fulldir,subdir); |
---|
2433 | else |
---|
2434 | def={fullfile(ProjectDir,'0_RESULTS')}; |
---|
2435 | dlgTitle='result directory'; |
---|
2436 | lineNo=1; |
---|
2437 | answer=msgbox_uvmat('INPUT_TXT',dlgTitle,def); |
---|
2438 | fulldir=answer{1}; |
---|
2439 | subdir=[]; |
---|
2440 | dirlist=sort(Series.RootFile); |
---|
2441 | for iview=1:nbview |
---|
2442 | if ~isempty(subdir) |
---|
2443 | subdir=[subdir '-']; |
---|
2444 | end |
---|
2445 | subdir=[subdir dirlist{iview}]; |
---|
2446 | end |
---|
2447 | res_subdir=fullfile(fulldir,subdir); |
---|
2448 | end |
---|
2449 | ext=FileExt{1}; |
---|
2450 | if ~exist(fulldir,'dir') |
---|
2451 | msgbox_uvmat('ERROR',['directory ' fulldir ' needs to be created']) |
---|
2452 | return |
---|
2453 | end |
---|
2454 | if ~exist(res_subdir,'dir') |
---|
2455 | dircur=pwd; |
---|
2456 | cd(fulldir) |
---|
2457 | error=mkdir(subdir); |
---|
2458 | cd(dircur) |
---|
2459 | end |
---|
2460 | filebasesub=fullfile(res_subdir,Series.RootFile{1}); |
---|
2461 | filebase_merge=fullfile(res_subdir,'merged');%root name for the merged files |
---|
2462 | |
---|
2463 | %projection object |
---|
2464 | if isfield(Series,'sethandles') |
---|
2465 | if ishandle(Series.sethandles.set_object) |
---|
2466 | Series.ProjObject=read_set_object(Series.sethandles); |
---|
2467 | if ~isfield(Series.ProjObject,'Style') |
---|
2468 | msgbox_uvmat('ERROR','Undefined projection object style') |
---|
2469 | return |
---|
2470 | end |
---|
2471 | if ~isequal(Series.ProjObject.Style,'plane') |
---|
2472 | msgbox_uvmat('ERROR','The projection object must be a plane') |
---|
2473 | return |
---|
2474 | end |
---|
2475 | end |
---|
2476 | end |
---|
2477 | |
---|
2478 | %MAIN LOOP |
---|
2479 | for ifile=1:nbfield |
---|
2480 | stopstate=get(hseries.RUN,'BusyAction'); |
---|
2481 | if isequal(stopstate,'queue')% enable STOP command from the 'series' interface |
---|
2482 | update_waitbar(hseries.waitbar,WaitbarPos,ifile/nbfield) |
---|
2483 | Amerge=0; |
---|
2484 | |
---|
2485 | %----------LOOP ON VIEWS---------------------- |
---|
2486 | nbtime=0; |
---|
2487 | for iview=1:nbview |
---|
2488 | %name of the current file |
---|
2489 | filename=name_generator(filebase{iview},num_i1{iview}(ifile),num_j1{iview}(ifile),Series.FileExt{iview},Series.NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile),SubDir{iview}); |
---|
2490 | if ~exist(filename,'file') |
---|
2491 | msgbox_uvmat('ERROR',['missing input file' filename]) |
---|
2492 | break |
---|
2493 | end |
---|
2494 | |
---|
2495 | %reading the current file |
---|
2496 | if testima |
---|
2497 | if test_movie(iview) |
---|
2498 | Field{iview}.A=read(MovieObject{iview},num_i1{iview}(ifile)); |
---|
2499 | else |
---|
2500 | Field{iview}.A=read_image(filename,Series.NomType{iview},num_i1{iview}(ifile)); |
---|
2501 | end % TODO: introduce ListVarName |
---|
2502 | npxy=size(Field{iview}.A); |
---|
2503 | Field{iview}.AX=[0.5 npxy(2)-0.5]; % coordinates of the first and last pixel centers |
---|
2504 | Field{iview}.AY=[npxy(1)-0.5 0.5]; |
---|
2505 | Field{iview}.CoordType='px'; |
---|
2506 | Field{iview}.AName='image'; |
---|
2507 | else |
---|
2508 | if testcivx |
---|
2509 | [Field{iview},VelTypeOut]=read_civxdata(filename,FieldName,VelType); |
---|
2510 | else |
---|
2511 | [Field{iview},var_detect]=nc2struct(filename,SubField.ListVarName); %read the corresponding input data |
---|
2512 | Field{iview}.VarAttribute=SubField.VarAttribute; |
---|
2513 | end |
---|
2514 | if isfield(Field{iview},'Time') |
---|
2515 | timeread(iview)=Field{iview}.Time; |
---|
2516 | nbtime=nbtime+1; |
---|
2517 | end |
---|
2518 | end |
---|
2519 | % coord transform |
---|
2520 | % z index |
---|
2521 | if ~isempty(NbSlice_calib) |
---|
2522 | Field{iview}.ZIndex=mod(num_i1{iview}(ifile)-1,NbSlice_calib{1})+1; |
---|
2523 | end |
---|
2524 | if ~isequal(transform,'') |
---|
2525 | Field{iview}=feval(Series.CoordType,Field{iview},XmlData{iview});%transform to phys if requested |
---|
2526 | end |
---|
2527 | if testcivx |
---|
2528 | Field{iview}=calc_field(FieldName,Field{iview}); |
---|
2529 | end |
---|
2530 | |
---|
2531 | %projection on object (gridded plane) |
---|
2532 | if isfield(Series,'ProjObject') |
---|
2533 | Field{iview}=proj_field(Field{iview},Series.ProjObject); |
---|
2534 | end |
---|
2535 | end |
---|
2536 | |
---|
2537 | %----------END LOOP ON VIEWS---------------------- |
---|
2538 | |
---|
2539 | %merge the nbview fields |
---|
2540 | MergeData=merge_field(Field); |
---|
2541 | if isfield(MergeData,'Txt') |
---|
2542 | msgbox_uvmat('ERROR',MergeData.Txt) |
---|
2543 | return |
---|
2544 | end |
---|
2545 | |
---|
2546 | % generating the name of the merged field |
---|
2547 | mergename=name_generator(filebase_merge,num_i1{iview}(ifile),num_j1{iview}(ifile),Series.FileExt{iview},Series.NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile)); |
---|
2548 | |
---|
2549 | % time: |
---|
2550 | time_i=0;%default |
---|
2551 | if isempty(time)% time from ImaDoc prevails |
---|
2552 | time_i=sum(timeread)/nbtime; |
---|
2553 | else |
---|
2554 | time_i=(time(iview,num_i1{iview}(ifile),num_j1{iview}(ifile))+time(iview,num_i2{iview}(ifile),num_j2{iview}(ifile)))/2; |
---|
2555 | end |
---|
2556 | |
---|
2557 | % recording the merged field |
---|
2558 | if testima %in case of input images an image is produced |
---|
2559 | if isa(MergeData.A,'uint8') |
---|
2560 | bitdepth=8; |
---|
2561 | elseif isa(MergeData.A,'uint16') |
---|
2562 | bitdepth=16; |
---|
2563 | end |
---|
2564 | imwrite(MergeData.A,mergename,'BitDepth',bitdepth); |
---|
2565 | %write xml calibration file |
---|
2566 | siz=size(MergeData.A); |
---|
2567 | npy=siz(1); |
---|
2568 | npx=siz(2); |
---|
2569 | if isfield(MergeData,'VarAttribute')&&isfield(MergeData.VarAttribute{1},'Coord_2')&&isfield(MergeData.VarAttribute{1},'Coord_1') |
---|
2570 | Rangx=MergeData.VarAttribute{1}.Coord_2; |
---|
2571 | Rangy=MergeData.VarAttribute{1}.Coord_1; |
---|
2572 | elseif isfield(MergeData,'AX')&& isfield(MergeData,'AY') |
---|
2573 | Rangx=[MergeData.AX(1) MergeData.AX(end)]; |
---|
2574 | Rangy=[MergeData.AY(1) MergeData.AY(end)]; |
---|
2575 | else |
---|
2576 | Rangx=[0.5 npx-0.5]; |
---|
2577 | Rangy=[npy-0.5 0.5];%default |
---|
2578 | end |
---|
2579 | pxcmx=(npx-1)/(Rangx(2)-Rangx(1)); |
---|
2580 | pxcmy=(npy-1)/(Rangy(1)-Rangy(2)); |
---|
2581 | T_x=-pxcmx*Rangx(1)+0.5; |
---|
2582 | T_y=-pxcmy*Rangy(2)+0.5; |
---|
2583 | GeometryCal.focal=1; |
---|
2584 | GeometryCal.R=[pxcmx,0,0;0,pxcmy,0;0,0,1]; |
---|
2585 | GeometryCal.Tx_Ty_Tz=[T_x T_y 1]; |
---|
2586 | ImaDoc.GeometryCalib=GeometryCal; |
---|
2587 | t=struct2xml(ImaDoc); |
---|
2588 | t=set(t,1,'name','ImaDoc'); |
---|
2589 | save(t,[filebase_merge '.xml']) |
---|
2590 | display([filebase_merge '.xml saved']) |
---|
2591 | else |
---|
2592 | MergeData.ListGlobalAttribute={'Project','InputFile_1','InputFile_end','nb_coord','nb_dim','dt','Time','civ'}; |
---|
2593 | MergeData.nb_coord=2; |
---|
2594 | MergeData.nb_dim=2; |
---|
2595 | MergeData.dt=1; |
---|
2596 | MergeData.Time=time_i; |
---|
2597 | error=struct2nc(mergename,MergeData); %save result file |
---|
2598 | if isempty(error) |
---|
2599 | display(['output file ' mergename ' written']) |
---|
2600 | else |
---|
2601 | display(error) |
---|
2602 | end |
---|
2603 | end |
---|
2604 | end |
---|
2605 | end |
---|
2606 | |
---|
2607 | %-------------------------------------------------------------------------- |
---|
2608 | function MergeData=merge_field(Data) |
---|
2609 | % initiate Matlab structure for physical field |
---|
2610 | if isempty(Data)||~iscell(Data) |
---|
2611 | MergeData=[]; |
---|
2612 | return |
---|
2613 | end |
---|
2614 | MergeData=Data{1};%default |
---|
2615 | error=0; |
---|
2616 | nbview=length(Data); |
---|
2617 | if nbview==1 |
---|
2618 | return |
---|
2619 | end |
---|
2620 | for iview=1:nbview |
---|
2621 | if ~isequal(MergeData.ListDimName,Data{iview}.ListDimName) |
---|
2622 | error=1; |
---|
2623 | end |
---|
2624 | if ~isequal(MergeData.ListVarName,Data{iview}.ListVarName) |
---|
2625 | error=1; |
---|
2626 | end |
---|
2627 | % if ~isequal(MergeData.VarDimIndex,Data{iview}.VarDimIndex) |
---|
2628 | % error=1; |
---|
2629 | % end |
---|
2630 | end |
---|
2631 | if error |
---|
2632 | MergeData.Txt='ERROR: attempt at merging fields of incompatible type'; |
---|
2633 | return |
---|
2634 | end |
---|
2635 | %group the variables (fields of 'FieldData') in cells of variables with the same dimensions |
---|
2636 | %----------------------------------------------------------------- |
---|
2637 | [CellVarIndex,NbDim,VarTypeCell]=find_field_indices(Data{1}); |
---|
2638 | %LOOP ON GROUPS OF VARIABLES SHARING THE SAME DIMENSIONS |
---|
2639 | % CellVarIndex=cells of variable index arrays |
---|
2640 | ivar_new=0; % index of the current variable in the projected field |
---|
2641 | icoord=0; |
---|
2642 | for icell=1:length(CellVarIndex) |
---|
2643 | if NbDim(icell)==1 |
---|
2644 | continue |
---|
2645 | end |
---|
2646 | VarIndex=CellVarIndex{icell};% indices of the selected variables in the list FieldData.ListVarName |
---|
2647 | VarType=VarTypeCell{icell}; |
---|
2648 | ivar_X=VarType.coord_x; |
---|
2649 | ivar_Y=VarType.coord_y; |
---|
2650 | ivar_FF=VarType.errorflag; |
---|
2651 | if isempty(ivar_X) |
---|
2652 | test_grid=1;%test for input data on regular grid (e.g. image)coordinates |
---|
2653 | else |
---|
2654 | if length(ivar_Y)~=1 |
---|
2655 | warndlg_uvmat('y coordinate missing in proj_field.m','ERROR') |
---|
2656 | return |
---|
2657 | end |
---|
2658 | test_grid=0; |
---|
2659 | end |
---|
2660 | % DimIndices=Data{1}.VarDimIndex{VarIndex(1)};%indices of the dimensions of the first variable (common to all variables in the cell) |
---|
2661 | %case of input fields with unstructured coordinates |
---|
2662 | if ~test_grid |
---|
2663 | for ivar=VarIndex |
---|
2664 | VarName=MergeData.ListVarName{ivar}; |
---|
2665 | for iview=1:nbview |
---|
2666 | eval(['MergeData.' VarName '=[MergeData.' VarName '; Data{iview}.' VarName ';']) |
---|
2667 | end |
---|
2668 | end |
---|
2669 | %case of fields defined on a structured grid |
---|
2670 | else |
---|
2671 | % DimValue=MergeData.DimValue(DimIndices);%set of dimension values |
---|
2672 | testFF=0; |
---|
2673 | for iview=2:nbview |
---|
2674 | % if ~isequal(DimValue,Data{iview}.DimValue(DimIndices)) |
---|
2675 | % MergeData.Txt='ERROR: attempt at merging structured fields with different sizes'; |
---|
2676 | % return |
---|
2677 | % end |
---|
2678 | for ivar=VarIndex |
---|
2679 | VarName=MergeData.ListVarName{ivar}; |
---|
2680 | if isfield(MergeData,'VarAttribute') |
---|
2681 | if length(MergeData.VarAttribute)>=ivar && isfield(MergeData.VarAttribute{ivar},'Role') && isequal(MergeData.VarAttribute{ivar}.Role,'errorflag') |
---|
2682 | testFF=1; |
---|
2683 | end |
---|
2684 | end |
---|
2685 | eval(['MergeData.' VarName '=MergeData.' VarName '+ Data{iview}.' VarName ';']) |
---|
2686 | end |
---|
2687 | end |
---|
2688 | if testFF |
---|
2689 | nbaver=nbview-MergeData.FF; |
---|
2690 | indgood=find(nbaver>0); |
---|
2691 | for ivar=VarIndex |
---|
2692 | VarName=MergeData.ListVarName{ivar}; |
---|
2693 | eval(['MergeData.' VarName '(indgood)=double(MergeData.' VarName '(indgood))./nbaver(indgood);']) |
---|
2694 | end |
---|
2695 | else |
---|
2696 | for ivar=VarIndex |
---|
2697 | VarName=MergeData.ListVarName{ivar}; |
---|
2698 | eval(['MergeData.' VarName '=double(MergeData.' VarName ')./nbview;']) |
---|
2699 | end |
---|
2700 | end |
---|
2701 | end |
---|
2702 | end |
---|
2703 | |
---|
2704 | |
---|
2705 | |
---|
2706 | |
---|
2707 | %----------------------------- |
---|
2708 | function mouse_up_gui(ggg,eventdata,handles) |
---|
2709 | if isequal(get(ggg,'SelectionType'),'alt') |
---|
2710 | display('global CurData, UserData of GUI series') |
---|
2711 | global CurData |
---|
2712 | CurData=get(ggg,'UserData'); |
---|
2713 | evalin('base','global CurData');%make CurData global in the workspace |
---|
2714 | evalin('base','CurData'); %display CurData in the workspace |
---|
2715 | commandwindow |
---|
2716 | % plot_text(CurData) |
---|
2717 | end |
---|
2718 | |
---|
2719 | |
---|
2720 | |
---|
2721 | % %---------------------------------------------------------------------- |
---|
2722 | % % --- display image movie and display time average |
---|
2723 | % %OBSOLETE: A SUPPRIMER |
---|
2724 | % %---------------------------------------------------------------------- |
---|
2725 | % function movie_ima(handles,filecell,filecell_1,num1,num_a,field) |
---|
2726 | % |
---|
2727 | % global hfig1 hfig2 hfig3 poscolbar |
---|
2728 | % global A val HIST |
---|
2729 | % |
---|
2730 | % A=[];aviobj=[]; |
---|
2731 | % % set(hfig1,'UserData','ima')% set the current field state to 'image' |
---|
2732 | % set(handles.zoom,'Value',1); %put zoom on |
---|
2733 | % nom_type=get(handles.file_input,'UserData'); |
---|
2734 | % % field=get(handles.civ1,'UserData'); |
---|
2735 | % % fields=field(1).fields; |
---|
2736 | % set(handles.speed,'Visible','On')%show slider to set movie speed |
---|
2737 | % set(handles.mo_speed_txt,'Visible','On') |
---|
2738 | % |
---|
2739 | % if ~isempty(filecell_1) |
---|
2740 | % file1=get(handles.file1_input,'UserData'); |
---|
2741 | % field1=file1.field; |
---|
2742 | % scal_type1=field1.fields; |
---|
2743 | % vel_type1=field1.vel_type; |
---|
2744 | % filename_1=filecell_1(1);% first file name in the series |
---|
2745 | % else |
---|
2746 | % filename_1=[]; |
---|
2747 | % end |
---|
2748 | % scal_type{1}=field(1).fields; |
---|
2749 | % vel_type{1}=field(1).vel_type; |
---|
2750 | % % display the first field |
---|
2751 | % [A,time,dt,rangx0,rangy0]=view_ima(handles,cell2mat(filecell(1)),filename_1,num1(1),num_a(1)); |
---|
2752 | % |
---|
2753 | % % calculate the histogram of the first image |
---|
2754 | % nxy=size(A); |
---|
2755 | % ndim=length(nxy); |
---|
2756 | % if ndim==2 % case of B/W images |
---|
2757 | % nxy(3)=1; |
---|
2758 | % end |
---|
2759 | % C=reshape(A,nxy(1)*nxy(2),nxy(3)); |
---|
2760 | % Amaxmax=double(max(max(max(A)))); |
---|
2761 | % Aminmin=double(min(min(min(A)))); |
---|
2762 | % if isa(C,'uint8')|isa(C,'uint16') |
---|
2763 | % C=double(C); |
---|
2764 | % dC=1; |
---|
2765 | % else |
---|
2766 | % dC=(Amaxmax-Aminmin)/100; |
---|
2767 | % end |
---|
2768 | % val=[Aminmin:dC:Amaxmax];% define bins for histogram |
---|
2769 | % HIST=hist(C,val);% initiate the global histogram |
---|
2770 | % if ndim==2, HIST=HIST'; end; |
---|
2771 | % |
---|
2772 | % auto_scale=get(handles.auto_scale,'Value'); |
---|
2773 | % min_input=str2num(get(handles.min_input,'String'));% select the minimum |
---|
2774 | % max_input=str2num(get(handles.scale_input,'String'));% select the max |
---|
2775 | % zoomstate=get(handles.zoom,'Value'); |
---|
2776 | % |
---|
2777 | % if isequal(get(handles.window_input,'String'),'avi'), |
---|
2778 | % basename=get(handles.file_input,'String'); |
---|
2779 | % prompt = {'file name';'frames per second';'frame resolution ([nbpixels x y])';'axis position relative to the frame'}; |
---|
2780 | % dlg_title = 'select properties of the output avi movie'; |
---|
2781 | % num_lines= 1; |
---|
2782 | % def = {[basename '_out.avi'];'5';'[1024 768]';'[0.05 0.07 0.87 0.88]'}; |
---|
2783 | % answer = inputdlg(prompt,dlg_title,num_lines,def); |
---|
2784 | % aviname=answer{1}; |
---|
2785 | % fps=str2num(answer{2}); |
---|
2786 | % if exist(aviname,'file')==2 |
---|
2787 | % delete(aviname); |
---|
2788 | % end; |
---|
2789 | % aviobj=avifile(aviname,'Compression','None','fps',fps); |
---|
2790 | % |
---|
2791 | % %display first view for tests |
---|
2792 | % figure(2); |
---|
2793 | % hh=get(gcf,'CurrentAxes'); |
---|
2794 | % if isempty(hh), |
---|
2795 | % hfig1=axes; |
---|
2796 | % else |
---|
2797 | % hfig1=hh; |
---|
2798 | % end; |
---|
2799 | % if isequal(filecell_1,{}) |
---|
2800 | % filename_1=[]; |
---|
2801 | % else |
---|
2802 | % filename_1=cell2mat(filecell_1(1)); |
---|
2803 | % end |
---|
2804 | % poscolbar=[0.93 0.15 0.02 0.7]; |
---|
2805 | % view_ima(handles,cell2mat(filecell(1)),filename_1,num1(1),num_a(1));% show the first field |
---|
2806 | % nbpix=eval(answer{3}); |
---|
2807 | % set(gcf,'Position',[1 1 nbpix])% resolution XVGA |
---|
2808 | % set(hfig1,'Position',eval(answer{4})); |
---|
2809 | % |
---|
2810 | % msgbox({'adjust figure 2 with its matlab edit menu ' ;... |
---|
2811 | % 'then type any keyboard key to get the avi movie as a copy of figure 2 display'}) |
---|
2812 | % pause; |
---|
2813 | % hh=colorbar; |
---|
2814 | % poscolbar=get(hh,'Position'); |
---|
2815 | % end |
---|
2816 | % |
---|
2817 | % %%%%%%%%%%%%%%%% |
---|
2818 | % %mask and usrdfct |
---|
2819 | % maskname=[]; %default |
---|
2820 | % if isequal(get(handles.mask_test,'Value'),1) |
---|
2821 | % maskbase=get(handles.mask_test,'UserData'); |
---|
2822 | % end |
---|
2823 | % % image or scalar processing programme set by user |
---|
2824 | % % if (get(handles.usr_fct,'Value')==1) |
---|
2825 | % % usrfct=get(handles.usr_fct,'UserData'); |
---|
2826 | % % else |
---|
2827 | % % usrfct=''; |
---|
2828 | % % end |
---|
2829 | % nburst=1; % nburst(1) =nbre of names in filename= nbre of bursts |
---|
2830 | % set(handles.text_display_1,'String',['image movie']) |
---|
2831 | % nbfield=length(filecell); |
---|
2832 | % if nbfield >1 |
---|
2833 | % for ifile=2:nbfield |
---|
2834 | % stopstate=get(handles.run0,'BusyAction'); |
---|
2835 | % if isequal(stopstate,'queue')% enable STOP command |
---|
2836 | % pausetime=1.02-get(handles.speed,'Value'); |
---|
2837 | % pause(pausetime) |
---|
2838 | % if isequal(get(handles.mask_test,'Value'),1) |
---|
2839 | % maskname=name_generator(maskbase,num1(ifile),1,'.png','png_series'); |
---|
2840 | % end |
---|
2841 | % if isequal(AName{1},'image') |
---|
2842 | % A=read_image(cell2mat(filecell(ifile)),num1(ifile),maskname);% read the first image, num2 is the counter for avi files |
---|
2843 | % else % read the first field from the netcdf file, imposing the pixel positions in the selected domain |
---|
2844 | % [A,time(ifile),dtr,rgx,rgy,vt_out,erread]=read_scalar(filecell{ifile},vel_type,scal_type,rangx0,rangy0,nxy,maskname); |
---|
2845 | % if erread==1; |
---|
2846 | % errordlg({['no spatial derivative in ' filecell{ifile}]; 'run patch first'}); return |
---|
2847 | % elseif erread==2; |
---|
2848 | % errordlg(['no field ' vel_type{1} ' in ' filecell{ifile}]); return |
---|
2849 | % elseif erread==3; |
---|
2850 | % errordlg(['scalar ' scal_type{1} ' not found in' filecell{ifile}]); return |
---|
2851 | % elseif erread==4; |
---|
2852 | % errordlg(['all points aligned in' filecell{ifile}]); return |
---|
2853 | % end |
---|
2854 | % end |
---|
2855 | % |
---|
2856 | % % read the second image |
---|
2857 | % if ~isempty(filecell_1) |
---|
2858 | % if isequal(scal_type{1},'image') |
---|
2859 | % A1=read_image(cell2mat(filecell_1(ifile)),num1(ifile),maskname);% read the second image, num2 is the counter for avi files |
---|
2860 | % Avalue_1=double(A1(indy,indx,:)); |
---|
2861 | % else % read the second field from the netcdf file, imposing the pixel positions in the selected domain |
---|
2862 | % [Avalue_1,time1(ifile),dtr,rgx,rgy,vt_out,erread]=read_scalar(filecell_1{ifile},{vel_type1},{scal_type1},rangx0,rangy0,npxy,maskname,usrfct); |
---|
2863 | % if erread==1; |
---|
2864 | % errordlg({['no spatial derivative in ' filecell_1{ifile}]; 'run patch first'}); return |
---|
2865 | % elseif erread==2; |
---|
2866 | % errordlg(['no field ' vel_type1 ' in ' filecell_1{ifile}]); return |
---|
2867 | % elseif erread==3; |
---|
2868 | % errordlg(['scalar ' scal_type1 ' not found in' filecell_1{ifile}]); return |
---|
2869 | % elseif erread==4; |
---|
2870 | % errordlg(['all points aligned in' filecell_1{ifile}]); return |
---|
2871 | % end |
---|
2872 | % end |
---|
2873 | % time(ifile)=(time(ifile)+time1(ifile))/2; |
---|
2874 | % Avalue=Avalue-Avalue_1; |
---|
2875 | % end |
---|
2876 | % set(handles.abs_time,'String',time); |
---|
2877 | % set(handles.field_counter,'String',num2str(num1(ifile))); |
---|
2878 | % set(handles.a_input,'String',num2stra(num_a(ifile),nom_type)); |
---|
2879 | % C=reshape(A,nxy(1)*nxy(2),nxy(3));% reshape in a vector |
---|
2880 | % [val,HIST]=hist_update(val,HIST,C,dC); |
---|
2881 | % [h,Amin,Amax]=plot_image(hfig1,rangx0,rangy0,1,scal_type{1},auto_scale,min_input,max_input,poscolbar,A); |
---|
2882 | % set(handles.min_input,'String',num2str(Amin));% select the minimum |
---|
2883 | % set(handles.scale_input,'String',num2str(Amax));% select the minimum |
---|
2884 | % if ~isequal(aviobj,[]), |
---|
2885 | % % mov=getframe(hfig1); |
---|
2886 | % mov=getframe(gcf); |
---|
2887 | % aviobj=addframe(aviobj,mov);end |
---|
2888 | % if (get(handles.zoom,'Value') == get(handles.zoom,'Max')),zoom on,end |
---|
2889 | % set(handles.field_counter,'String',num2str(num1(ifile))) |
---|
2890 | % % end |
---|
2891 | % end |
---|
2892 | % end |
---|
2893 | % end |
---|
2894 | % aviobj=close(aviobj); |
---|
2895 | % |
---|
2896 | % %plot global image histogram |
---|
2897 | % HIST=HIST/(nbfield*nxy(1)*nxy(2));% normalized by the number of points |
---|
2898 | % axes(hfig2) %in main window |
---|
2899 | % if ndim==2 |
---|
2900 | % plot(val,HIST) |
---|
2901 | % else |
---|
2902 | % plot(val,HIST(:,1),'r',val,HIST(:,2),'g',val,HIST(:,3),'b') |
---|
2903 | % end |
---|
2904 | % residu=1-sum(HIST,1); |
---|
2905 | % title(['histo, residu ' num2str(residu)]) |
---|
2906 | % grid on |
---|
2907 | % axes(hfig3) |
---|
2908 | % cla %clear the second histogram window |
---|
2909 | % |
---|
2910 | |
---|
2911 | |
---|
2912 | |
---|
2913 | |
---|
2914 | %%%%%%%%%%%%% |
---|
2915 | function [ind_remove]=find_pairs(dirpair,ind_i,last_i) |
---|
2916 | |
---|
2917 | indsel=ind_i; |
---|
2918 | indiff=diff(ind_i); %test index increment to detect multiplets (several pairs with the same index ind_i) and holes in the series |
---|
2919 | indiff=[1 indiff last_i-ind_i(end)+1];%for testing gaps with the imposed bounds |
---|
2920 | if ~isempty(indiff) |
---|
2921 | indiff2=diff(indiff); |
---|
2922 | indiffp=[indiff2 1]; |
---|
2923 | indiffm=[1 indiff2]; |
---|
2924 | ind_multi_m=find((indiff==0)&(indiffm<0))-1;%indices of first members of multiplets |
---|
2925 | ind_multi_p=find((indiff==0)&(indiffp>0));%indices of last members of multiplets |
---|
2926 | %for each multiplet, select the most recent file |
---|
2927 | ind_remove=[]; |
---|
2928 | for i=1:length(ind_multi_m) |
---|
2929 | ind_pairs=ind_multi_m(i):ind_multi_p(i); |
---|
2930 | for imulti=1:length(ind_pairs) |
---|
2931 | datepair(imulti)=datenum(dirpair(ind_pairs(imulti)).date);%dates of creation |
---|
2932 | end |
---|
2933 | [datenew,indsort2]=sort(datepair); %sort the multiplet by creation date |
---|
2934 | ind_s=indsort2(1:end-1);% |
---|
2935 | ind_remove=[ind_remove ind_pairs(ind_s)];%remove these indices, leave the last one |
---|
2936 | end |
---|
2937 | end |
---|
2938 | |
---|
2939 | %-------------------------------------------------------- |
---|
2940 | |
---|
2941 | |
---|
2942 | %----------------------------------------------------------- |
---|
2943 | % find the times corresponding to the first and last indices of a series |
---|
2944 | % |
---|
2945 | function displ_time(handles,times) |
---|
2946 | hseries=get(handles.last_i,'parent'); |
---|
2947 | SeriesData=get(hseries,'UserData');% |
---|
2948 | first_i=str2num(get(handles.first_i,'String')); |
---|
2949 | first_j=str2num(get(handles.first_j,'String')); |
---|
2950 | last_i=str2num(get(handles.last_i,'String')); |
---|
2951 | last_j=str2num(get(handles.last_j,'String')); |
---|
2952 | % index_civ=get(handles.list_pair_civ,'Value'); |
---|
2953 | % NomType=get(handles.NomType,'String'); |
---|
2954 | NomType=SeriesData.NomType; |
---|
2955 | mode_list=get(handles.mode,'String'); |
---|
2956 | index_mode=get(handles.mode,'Value'); |
---|
2957 | mode=mode_list{index_mode}; |
---|
2958 | % ind_shift=0;%default |
---|
2959 | |
---|
2960 | time_first=[]; |
---|
2961 | time_last=[]; |
---|
2962 | if ~isfield(SeriesData,'Time') |
---|
2963 | SeriesData.Time{1}=[]; |
---|
2964 | end |
---|
2965 | for iview=1:length(NomType) |
---|
2966 | time_first_cell{iview}='?'; |
---|
2967 | time_last_cell{iview}='?';%default |
---|
2968 | time=SeriesData.Time{iview}; |
---|
2969 | if isequal(NomType{iview},'_i1-i2_j')|isequal(NomType{iview},'_i_j1-j2')|isequal(NomType{iview},'#_ab')|isequal(NomType{iview},'_i1-i2') |
---|
2970 | if isfield(SeriesData,'displ_num')& ~isempty(SeriesData.displ_num) |
---|
2971 | ind_shift=SeriesData.displ_num(iview,:); |
---|
2972 | if isequal(mode,'bursts') |
---|
2973 | first_j=0; |
---|
2974 | last_j=0; |
---|
2975 | end |
---|
2976 | first_i1=first_i +ind_shift(3); |
---|
2977 | first_i2 =first_i +ind_shift(4); |
---|
2978 | first_j1 =first_j +ind_shift(1); |
---|
2979 | first_j2 =first_j +ind_shift(2); |
---|
2980 | last_i1=last_i +ind_shift(3); |
---|
2981 | last_i2 =last_i +ind_shift(4); |
---|
2982 | last_j1 =last_j +ind_shift(1); |
---|
2983 | last_j2 =last_j +ind_shift(2); |
---|
2984 | siz=size(SeriesData.Time{1}); |
---|
2985 | if first_i1>=1 && first_j1>=1 && siz(1)>=last_i2 && siz(2)>=last_j2 |
---|
2986 | time_first=(time(first_i1,first_j1)+time(first_i2,first_j2))/2; |
---|
2987 | time_last=(time(last_i1,last_j1)+time(last_i2,last_j2))/2; |
---|
2988 | else%read the time in the nc files |
---|
2989 | RootPath=get(handles.RootPath,'String'); |
---|
2990 | RootFile=get(handles.RootFile,'String'); |
---|
2991 | SubDir=get(handles.SubDir,'String'); |
---|
2992 | %VelType=get(handles.VelType,'String'); |
---|
2993 | VelType_str=get(handles.VelTypeMenu,'String'); |
---|
2994 | VelType_val=get(handles.VelTypeMenu,'Value'); |
---|
2995 | VelType=VelType_str{VelType_val}; |
---|
2996 | filebase=fullfile(RootPath{1},RootFile{1}); |
---|
2997 | [filefirst]=name_generator(filebase,first_i1,first_j1,'.nc',NomType{iview},1,first_i2,first_j2,SubDir{iview}); |
---|
2998 | if exist(filefirst,'file') |
---|
2999 | Attrib=nc2struct(filefirst,[]); |
---|
3000 | if isfield(Attrib,'Time') |
---|
3001 | time_first=Attrib.Time; |
---|
3002 | else |
---|
3003 | if isfield(Attrib,'absolut_time_T0') |
---|
3004 | time_first=Attrib.absolut_time_T0; |
---|
3005 | end |
---|
3006 | if isfield(Attrib,'absolut_time_T0_2')&&~(isequal(VelType,'civ1')||isequal(VelType,'interp1')||isequal(VelType,'filter1')) |
---|
3007 | time_first=Attrib.absolut_time_T0_2; |
---|
3008 | end |
---|
3009 | end |
---|
3010 | end |
---|
3011 | [filelast]=name_generator(filebase,last_i1,last_j1,'.nc',NomType{iview},1,last_i2,last_j2,SubDir{iview}); |
---|
3012 | if exist(filelast,'file') |
---|
3013 | Attrib=nc2struct(filelast,[]); |
---|
3014 | if isfield(Attrib,'Time') |
---|
3015 | time_last=Attrib.Time; |
---|
3016 | else |
---|
3017 | if isfield(Attrib,'absolut_time_T0') |
---|
3018 | time_last=Attrib.absolut_time_T0; |
---|
3019 | end |
---|
3020 | if isfield(Attrib,'absolut_time_T0_2')&&~(isequal(VelType,'civ1')||isequal(VelType,'interp1')||isequal(VelType,'filter1')) |
---|
3021 | time_last=Attrib.absolut_time_T0_2; |
---|
3022 | end |
---|
3023 | end |
---|
3024 | end |
---|
3025 | end |
---|
3026 | end |
---|
3027 | else |
---|
3028 | siz=size(times); |
---|
3029 | if siz(1)>=last_i & siz(2)>=last_j |
---|
3030 | time_first=times(first_i,first_j); |
---|
3031 | time_last=times(last_i,last_j); |
---|
3032 | end |
---|
3033 | end |
---|
3034 | time_first_cell{iview}=num2str(time_first,4); |
---|
3035 | time_last_cell{iview}=num2str(time_last,4); |
---|
3036 | end |
---|
3037 | set(handles.time_first,'Value',1) |
---|
3038 | set(handles.time_last,'Value',1) |
---|
3039 | set(handles.time_first,'String',time_first_cell); |
---|
3040 | set(handles.time_last,'String',time_last_cell); |
---|
3041 | |
---|
3042 | %-------------------------------------------------------------------- |
---|
3043 | % --- Executes on selection change in VelTypeMenu. |
---|
3044 | function VelTypeMenu_Callback(hObject, eventdata, handles) |
---|
3045 | % VelTypeList=get(handles.VelTypeMenu,'String'); |
---|
3046 | % VelTypeIndex=get(handles.VelTypeMenu,'Value'); |
---|
3047 | % VelTypeCell=get(handles.VelType,'String'); |
---|
3048 | % VelTypeCell{1}=VelTypeList{VelTypeIndex}; |
---|
3049 | % set(handles.VelType,'String',VelTypeCell) |
---|
3050 | |
---|
3051 | |
---|
3052 | %-------------------------------------------------------------------- |
---|
3053 | % --- Executes on button press in GetObject. |
---|
3054 | function GetObject_Callback(hObject, eventdata, handles) |
---|
3055 | hseries=get(handles.GetObject,'parent'); |
---|
3056 | SeriesData=get(hseries,'UserData'); |
---|
3057 | value=get(handles.GetObject,'Value'); |
---|
3058 | if value |
---|
3059 | set(handles.GetObject,'BackgroundColor',[1 1 0])%put unactivated buttons to yellow |
---|
3060 | DataInit.ParentButton=handles.GetObject; |
---|
3061 | hset_object=findobj(allchild(0),'Name','set_object');%find the set_object interface handle |
---|
3062 | if ishandle(hset_object) |
---|
3063 | [SeriesData.hset_object,SeriesData.sethandles]=set_object(DataInit); %open the set_object interface |
---|
3064 | else |
---|
3065 | DataInit.TITLE='POINTS';%default option |
---|
3066 | [SeriesData.hset_object,SeriesData.sethandles]=set_object(DataInit); %open the set_object interface |
---|
3067 | end |
---|
3068 | else |
---|
3069 | set(handles.GetObject,'BackgroundColor',[0 1 0])%put activated buttons to green |
---|
3070 | if isfield(SeriesData,'hset_object')&& ishandle(SeriesData.hset_object) |
---|
3071 | close(SeriesData.hset_object) |
---|
3072 | end |
---|
3073 | end |
---|
3074 | set(hseries,'UserData',SeriesData) |
---|
3075 | |
---|
3076 | %-------------------------------------------------------------- |
---|
3077 | function GetMask_Callback(hObject, eventdata, handles) |
---|
3078 | value=get(handles.GetMask,'Value'); |
---|
3079 | if value |
---|
3080 | errordlg('not implemented yet') |
---|
3081 | end |
---|
3082 | %-------------------------------------------------------------- |
---|
3083 | |
---|
3084 | %-------------------------------------------------------------------------- |
---|
3085 | %'uv_ncbrowser': interactively calls the netcdf file browser 'get_field.m' |
---|
3086 | function ncbrowser_uvmat(hObject, eventdata) |
---|
3087 | bla=get(gcbo,'String'); |
---|
3088 | ind=get(gcbo,'Value'); |
---|
3089 | filename=cell2mat(bla(ind)); |
---|
3090 | blank=find(filename==' '); |
---|
3091 | filename=filename(1:blank-1); |
---|
3092 | get_field(filename) |
---|
3093 | |
---|
3094 | |
---|
3095 | |
---|
3096 | % -------------------------------------------------------------------- |
---|
3097 | function MenuHelp_Callback(hObject, eventdata, handles) |
---|
3098 | |
---|
3099 | path_to_uvmat=which ('uvmat');% check the path of uvmat |
---|
3100 | pathelp=fileparts(path_to_uvmat); |
---|
3101 | helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); |
---|
3102 | if isempty(dir(helpfile)), errordlg('Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') |
---|
3103 | else |
---|
3104 | web([helpfile '#series']) |
---|
3105 | end |
---|
3106 | |
---|
3107 | |
---|
3108 | |
---|
3109 | |
---|
3110 | |
---|
3111 | |
---|