[573] | 1 | %%'check_data_files': check the existence, type and status of the files selected by series.fig |
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[330] | 2 | %------------------------------------------------------------------------ |
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[447] | 3 | % function GUI_input=check_data_files(Param) |
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[330] | 4 | % |
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[447] | 5 | %%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%% |
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[330] | 6 | %OUTPUT |
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| 7 | % GUI_input=list of options in the GUI series.fig needed for the function |
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| 8 | % |
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| 9 | %INPUT: |
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[447] | 10 | % In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series. |
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| 11 | % In batch mode, Param is the name of the corresponding xml file containing the same information |
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| 12 | % In the absence of input (as activated when the current Action is selected |
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| 13 | % in series), the function ouput GUI_input set the activation of the needed GUI elements |
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[330] | 14 | % |
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[447] | 15 | % Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param) |
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| 16 | % .InputTable: cell of input file names, (several lines for multiple input) |
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| 17 | % each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension} |
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| 18 | % .OutputSubDir: name of the subdirectory for data outputs |
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| 19 | % .OutputDir: directory for data outputs, including path |
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| 20 | % .Action: .ActionName: name of the current activated function |
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| 21 | % .ActionPath: path of the current activated function |
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| 22 | % .IndexRange: set the file or frame indices on which the action must be performed |
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| 23 | % .FieldTransform: .TransformName: name of the selected transform function |
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| 24 | % .TransformPath: path of the selected transform function |
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| 25 | % .TransformHandle: corresponding function handle |
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| 26 | % .InputFields: sub structure describing the input fields withfields |
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| 27 | % .FieldName: name of the field |
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| 28 | % .VelType: velocity type |
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| 29 | % .FieldName_1: name of the second field in case of two input series |
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| 30 | % .VelType_1: velocity type of the second field in case of two input series |
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| 31 | % .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object) |
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| 32 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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[330] | 33 | |
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[810] | 34 | %======================================================================= |
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[1107] | 35 | % Copyright 2008-2022, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France |
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[810] | 36 | % http://www.legi.grenoble-inp.fr |
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| 37 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
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| 38 | % |
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| 39 | % This file is part of the toolbox UVMAT. |
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| 40 | % |
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| 41 | % UVMAT is free software; you can redistribute it and/or modify |
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| 42 | % it under the terms of the GNU General Public License as published |
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| 43 | % by the Free Software Foundation; either version 2 of the license, |
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| 44 | % or (at your option) any later version. |
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| 45 | % |
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| 46 | % UVMAT is distributed in the hope that it will be useful, |
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| 47 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 48 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 49 | % GNU General Public License (see LICENSE.txt) for more details. |
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| 50 | %======================================================================= |
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| 51 | |
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[457] | 52 | function ParamOut=check_data_files(Param) |
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[447] | 53 | |
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[997] | 54 | ParamOut=[]; |
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[592] | 55 | %% input preparation mode (no RUN) |
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| 56 | if isstruct(Param) && isequal(Param.Action.RUN,0) |
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[594] | 57 | ParamOut.AllowInputSort='off';% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default) |
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| 58 | ParamOut.WholeIndexRange='off';% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default) |
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| 59 | ParamOut.NbSlice='on';%nbre of slices ('off' by default) |
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| 60 | ParamOut.VelType='off';% menu for selecting the velocity type (options 'off'/'one'/'two', 'off' by default) |
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| 61 | ParamOut.FieldName='off';% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
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| 62 | ParamOut.FieldTransform = 'off';%can use a transform function |
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| 63 | ParamOut.ProjObject='off';%can use projection object(option 'off'/'on', |
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| 64 | ParamOut.Mask='off';%can use mask option (option 'off'/'on', 'off' by default) |
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[826] | 65 | ParamOut.OutputSubDirMode='none'; %(options 'none'/'custom'/'auto'/'first'/'last','auto' by default) |
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| 66 | % 'none' =no output files |
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[626] | 67 | return |
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[330] | 68 | end |
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[478] | 69 | %%%%%%%%%%%% STANDARD PART %%%%%%%%%%%% |
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[594] | 70 | |
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| 71 | %% read input parameters from an xml file if input is a file name (batch mode) |
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| 72 | checkrun=1; |
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[478] | 73 | if ischar(Param) |
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[594] | 74 | Param=xml2struct(Param);% read Param as input file (batch case) |
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| 75 | checkrun=0; |
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[374] | 76 | end |
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[626] | 77 | hseries=findobj(allchild(0),'Tag','series'); |
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| 78 | RUNHandle=findobj(hseries,'Tag','RUN');%handle of RUN button in GUI series |
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| 79 | WaitbarHandle=findobj(hseries,'Tag','Waitbar');%handle of waitbar in GUI series |
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[594] | 80 | |
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[447] | 81 | %% root input file(s) and type |
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| 82 | RootPath=Param.InputTable(:,1); |
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| 83 | RootFile=Param.InputTable(:,3); |
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| 84 | SubDir=Param.InputTable(:,2); |
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| 85 | NomType=Param.InputTable(:,4); |
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| 86 | FileExt=Param.InputTable(:,5); |
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[478] | 87 | [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param); |
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[592] | 88 | if isempty(i1_series) |
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| 89 | return |
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| 90 | end |
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[478] | 91 | %%%%%%%%%%%% |
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| 92 | % The cell array filecell is the list of input file names, while |
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| 93 | % filecell{iview,fileindex}: |
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| 94 | % iview: line in the table corresponding to a given file series |
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[626] | 95 | % fileindex: file index within the file series, |
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| 96 | % i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j |
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[478] | 97 | % i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices |
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| 98 | %%%%%%%%%%%% |
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[447] | 99 | NbSlice=1;%default |
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[478] | 100 | if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice) |
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[447] | 101 | NbSlice=Param.IndexRange.NbSlice; |
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| 102 | end |
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[455] | 103 | nbview=numel(i1_series);%number of input file series (lines in InputTable) |
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[478] | 104 | nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices) |
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| 105 | nbfield_i=size(i1_series{1},2); %nb of fields for the i index |
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| 106 | nbfield=nbfield_j*nbfield_i; %total number of fields |
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[626] | 107 | nbfield_i=floor(nbfield/NbSlice);%total number of indexes in a slice (adjusted to an integer number of slices) |
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[478] | 108 | nbfield=nbfield_i*NbSlice; %total number of fields after adjustement |
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[330] | 109 | |
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[626] | 110 | %determine the file type on each line from the first input file |
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[447] | 111 | NcTypeOptions={'netcdf','civx','civdata'}; |
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| 112 | for iview=1:nbview |
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[784] | 113 | [FileInfo{iview},Object{iview}]=get_file_info(filecell{iview,1}); |
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[783] | 114 | FileType{iview}=FileInfo{iview}.FileType; |
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[1033] | 115 | CheckImage{iview}=strcmp(FileInfo{iview}.FieldType,'image');% =1 for images |
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[447] | 116 | CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files |
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| 117 | end |
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[330] | 118 | |
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[447] | 119 | %% MAIN LOOP ON VIEWS (INPUT LINES) |
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[330] | 120 | for iview=1:nbview |
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[455] | 121 | if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')||isequal(FileType{iview},'multimage') |
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[784] | 122 | [FileInfo]=get_file_info(filecell{iview,1}); |
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[470] | 123 | Tabchar{1}=filecell{iview,1};%info.Filename; |
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[616] | 124 | Tabchar{2}=''; |
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[1100] | 125 | if isfield(FileInfo,'FrameRate') |
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[616] | 126 | Tabchar{3}=[num2str(FileInfo.FrameRate) ' frames/s ']; |
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[1100] | 127 | end |
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[635] | 128 | message=''; |
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[330] | 129 | else |
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| 130 | Tabchar={}; |
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| 131 | %LOOP ON SLICES |
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| 132 | for i_slice=1:NbSlice |
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[447] | 133 | index_slice=i_slice:NbSlice:nbfield; |
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[340] | 134 | filefound={}; |
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[451] | 135 | datnum=zeros(1,nbfield_j); |
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[447] | 136 | for ifile=1:nbfield_i |
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[626] | 137 | update_waitbar(WaitbarHandle,ifile/nbfield_i) |
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| 138 | if ishandle(RUNHandle) && ~strcmp(get(RUNHandle,'BusyAction'),'queue') |
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| 139 | disp('program stopped by user') |
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| 140 | break |
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| 141 | end |
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| 142 | file=filecell{iview,index_slice(ifile)}; |
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| 143 | [Path,Name,ext]=fileparts(file); |
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| 144 | detect=exist(file,'file'); % check the existence of the file |
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| 145 | if detect==0 |
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| 146 | lastfield='not found'; |
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[594] | 147 | else |
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[626] | 148 | datfile=dir(file); |
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| 149 | if isfield(datfile,'datenum') |
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| 150 | datnum(ifile)=datfile.datenum; |
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| 151 | filefound(ifile)={datfile.name}; |
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| 152 | end |
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| 153 | lastfield=''; |
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[784] | 154 | [FileInfo,Object]=get_file_info(file); |
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[783] | 155 | FileType{iview}=FileInfo.FileType; |
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[626] | 156 | if strcmp(FileType{iview},'civx')||strcmp(FileType{iview},'civdata') |
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| 157 | if isfield(FileInfo,'CivStage') |
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[912] | 158 | liststage={'civ','fix','patch'}; |
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| 159 | stagechoice=1+mod(FileInfo.CivStage-1,3); |
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| 160 | iter=1+floor((FileInfo.CivStage-1)/3); |
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| 161 | lastfield=[liststage{stagechoice} num2str(iter)]; |
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| 162 | %liststage={'civ1','fix1','patch1','civ2','fix2','patch2'}; |
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| 163 | %lastfield=liststage{FileInfo.CivStage}; |
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[594] | 164 | end |
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[330] | 165 | end |
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[626] | 166 | lastfield=[FileType{iview} ', ' lastfield]; |
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[330] | 167 | end |
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[626] | 168 | Tabchar(1,i_slice)={['slice #' num2str(i_slice)]}; |
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| 169 | Tabchar(ifile+1,i_slice)={[file '...' lastfield]}; |
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[330] | 170 | end |
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| 171 | end |
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[340] | 172 | if isempty(filefound) |
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[330] | 173 | if NbSlice>1 |
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| 174 | message=['no set of ' num2str(NbSlice) ' (NbSlices) files found']; |
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| 175 | else |
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[594] | 176 | message='no file found'; |
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[330] | 177 | end |
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| 178 | else |
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| 179 | datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files |
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[451] | 180 | filefound=filefound(find(datnum)); |
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[330] | 181 | [first,ind]=min(datnum); |
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| 182 | [last,indlast]=max(datnum); |
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[451] | 183 | message={['oldest modification: ' filefound{ind} ' : ' datestr(first)];... |
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| 184 | ['latest modification: ' filefound{indlast} ' : ' datestr(last)]}; |
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[594] | 185 | end |
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[330] | 186 | if ~isempty(Tabchar) |
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[594] | 187 | Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1); |
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[330] | 188 | end |
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| 189 | end |
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| 190 | hfig=figure(iview); |
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| 191 | clf |
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| 192 | if iview>1 |
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| 193 | pos=get(iview-1,'Position'); |
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| 194 | pos(1)=pos(1)+(iview-1)*pos(1)/nbview; |
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| 195 | set(hfig,'Position',pos) |
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| 196 | end |
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[427] | 197 | set(hfig,'name',['check_data_files:view= ' num2str(iview)]) |
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| 198 | set(hfig,'MenuBar','none')% suppress the menu bar |
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| 199 | set(hfig,'NumberTitle','off')%suppress the fig number in the title |
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[361] | 200 | h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'}); |
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[330] | 201 | hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message); |
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| 202 | end |
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[649] | 203 | |
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| 204 | % 'open_uvmat': open with uvmat the field selected in the list of 'series/check_data_files' |
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| 205 | %------------------------------------------------------------------------ |
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| 206 | %function open_uvmat(hObject, eventdata) |
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| 207 | % |
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| 208 | % INPUT: |
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| 209 | % hObject: handle of uicontrol object containing the list |
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| 210 | % eventdata: not used |
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| 211 | function open_uvmat(hObject, eventdata) |
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| 212 | %------------------------------------------------------------------------ |
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| 213 | list=get(hObject,'String'); |
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| 214 | index=get(hObject,'Value'); |
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| 215 | rootroot=get(hObject,'UserData'); |
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| 216 | filename=list{index}; |
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| 217 | ind_dot=strfind(filename,'...'); |
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| 218 | if ~isempty(ind_dot) |
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| 219 | filename=filename(1:ind_dot-1); |
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| 220 | end |
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| 221 | filename=fullfile(rootroot,filename); |
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| 222 | if exist(filename,'file')%visualise the vel field if it exists |
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| 223 | uvmat(filename) |
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| 224 | set(gcbo,'Value',1) |
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| 225 | end |
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