1 | %%'check_data_files': check the existence, type and status of the files selected by series.fig |
---|
2 | %------------------------------------------------------------------------ |
---|
3 | % function GUI_input=check_data_files(Param) |
---|
4 | % |
---|
5 | %%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
6 | %OUTPUT |
---|
7 | % GUI_input=list of options in the GUI series.fig needed for the function |
---|
8 | % |
---|
9 | %INPUT: |
---|
10 | % In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series. |
---|
11 | % In batch mode, Param is the name of the corresponding xml file containing the same information |
---|
12 | % In the absence of input (as activated when the current Action is selected |
---|
13 | % in series), the function ouput GUI_input set the activation of the needed GUI elements |
---|
14 | % |
---|
15 | % Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param) |
---|
16 | % .InputTable: cell of input file names, (several lines for multiple input) |
---|
17 | % each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension} |
---|
18 | % .OutputSubDir: name of the subdirectory for data outputs |
---|
19 | % .OutputDir: directory for data outputs, including path |
---|
20 | % .Action: .ActionName: name of the current activated function |
---|
21 | % .ActionPath: path of the current activated function |
---|
22 | % .IndexRange: set the file or frame indices on which the action must be performed |
---|
23 | % .FieldTransform: .TransformName: name of the selected transform function |
---|
24 | % .TransformPath: path of the selected transform function |
---|
25 | % .TransformHandle: corresponding function handle |
---|
26 | % .InputFields: sub structure describing the input fields withfields |
---|
27 | % .FieldName: name of the field |
---|
28 | % .VelType: velocity type |
---|
29 | % .FieldName_1: name of the second field in case of two input series |
---|
30 | % .VelType_1: velocity type of the second field in case of two input series |
---|
31 | % .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object) |
---|
32 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
33 | |
---|
34 | %======================================================================= |
---|
35 | % Copyright 2008-2018, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France |
---|
36 | % http://www.legi.grenoble-inp.fr |
---|
37 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
---|
38 | % |
---|
39 | % This file is part of the toolbox UVMAT. |
---|
40 | % |
---|
41 | % UVMAT is free software; you can redistribute it and/or modify |
---|
42 | % it under the terms of the GNU General Public License as published |
---|
43 | % by the Free Software Foundation; either version 2 of the license, |
---|
44 | % or (at your option) any later version. |
---|
45 | % |
---|
46 | % UVMAT is distributed in the hope that it will be useful, |
---|
47 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
---|
48 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
---|
49 | % GNU General Public License (see LICENSE.txt) for more details. |
---|
50 | %======================================================================= |
---|
51 | |
---|
52 | function ParamOut=check_data_files(Param) |
---|
53 | |
---|
54 | ParamOut=[]; |
---|
55 | %% input preparation mode (no RUN) |
---|
56 | if isstruct(Param) && isequal(Param.Action.RUN,0) |
---|
57 | ParamOut.AllowInputSort='off';% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default) |
---|
58 | ParamOut.WholeIndexRange='off';% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default) |
---|
59 | ParamOut.NbSlice='on';%nbre of slices ('off' by default) |
---|
60 | ParamOut.VelType='off';% menu for selecting the velocity type (options 'off'/'one'/'two', 'off' by default) |
---|
61 | ParamOut.FieldName='off';% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
---|
62 | ParamOut.FieldTransform = 'off';%can use a transform function |
---|
63 | ParamOut.ProjObject='off';%can use projection object(option 'off'/'on', |
---|
64 | ParamOut.Mask='off';%can use mask option (option 'off'/'on', 'off' by default) |
---|
65 | ParamOut.OutputSubDirMode='none'; %(options 'none'/'custom'/'auto'/'first'/'last','auto' by default) |
---|
66 | % 'none' =no output files |
---|
67 | return |
---|
68 | end |
---|
69 | %%%%%%%%%%%% STANDARD PART %%%%%%%%%%%% |
---|
70 | |
---|
71 | %% read input parameters from an xml file if input is a file name (batch mode) |
---|
72 | checkrun=1; |
---|
73 | if ischar(Param) |
---|
74 | Param=xml2struct(Param);% read Param as input file (batch case) |
---|
75 | checkrun=0; |
---|
76 | end |
---|
77 | hseries=findobj(allchild(0),'Tag','series'); |
---|
78 | RUNHandle=findobj(hseries,'Tag','RUN');%handle of RUN button in GUI series |
---|
79 | WaitbarHandle=findobj(hseries,'Tag','Waitbar');%handle of waitbar in GUI series |
---|
80 | |
---|
81 | %% root input file(s) and type |
---|
82 | RootPath=Param.InputTable(:,1); |
---|
83 | RootFile=Param.InputTable(:,3); |
---|
84 | SubDir=Param.InputTable(:,2); |
---|
85 | NomType=Param.InputTable(:,4); |
---|
86 | FileExt=Param.InputTable(:,5); |
---|
87 | [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param); |
---|
88 | if isempty(i1_series) |
---|
89 | return |
---|
90 | end |
---|
91 | %%%%%%%%%%%% |
---|
92 | % The cell array filecell is the list of input file names, while |
---|
93 | % filecell{iview,fileindex}: |
---|
94 | % iview: line in the table corresponding to a given file series |
---|
95 | % fileindex: file index within the file series, |
---|
96 | % i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j |
---|
97 | % i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices |
---|
98 | %%%%%%%%%%%% |
---|
99 | NbSlice=1;%default |
---|
100 | if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice) |
---|
101 | NbSlice=Param.IndexRange.NbSlice; |
---|
102 | end |
---|
103 | nbview=numel(i1_series);%number of input file series (lines in InputTable) |
---|
104 | nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices) |
---|
105 | nbfield_i=size(i1_series{1},2); %nb of fields for the i index |
---|
106 | nbfield=nbfield_j*nbfield_i; %total number of fields |
---|
107 | nbfield_i=floor(nbfield/NbSlice);%total number of indexes in a slice (adjusted to an integer number of slices) |
---|
108 | nbfield=nbfield_i*NbSlice; %total number of fields after adjustement |
---|
109 | |
---|
110 | %determine the file type on each line from the first input file |
---|
111 | NcTypeOptions={'netcdf','civx','civdata'}; |
---|
112 | for iview=1:nbview |
---|
113 | [FileInfo{iview},Object{iview}]=get_file_info(filecell{iview,1}); |
---|
114 | FileType{iview}=FileInfo{iview}.FileType; |
---|
115 | CheckImage{iview}=strcmp(FileInfo{iview}.FieldType,'image');% =1 for images |
---|
116 | CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files |
---|
117 | end |
---|
118 | |
---|
119 | %% MAIN LOOP ON VIEWS (INPUT LINES) |
---|
120 | for iview=1:nbview |
---|
121 | if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')||isequal(FileType{iview},'multimage') |
---|
122 | [FileInfo]=get_file_info(filecell{iview,1}); |
---|
123 | Tabchar{1}=filecell{iview,1};%info.Filename; |
---|
124 | Tabchar{2}=''; |
---|
125 | Tabchar{3}=[num2str(FileInfo.FrameRate) ' frames/s ']; |
---|
126 | message=''; |
---|
127 | else |
---|
128 | Tabchar={}; |
---|
129 | %LOOP ON SLICES |
---|
130 | for i_slice=1:NbSlice |
---|
131 | index_slice=i_slice:NbSlice:nbfield; |
---|
132 | filefound={}; |
---|
133 | datnum=zeros(1,nbfield_j); |
---|
134 | for ifile=1:nbfield_i |
---|
135 | update_waitbar(WaitbarHandle,ifile/nbfield_i) |
---|
136 | if ishandle(RUNHandle) && ~strcmp(get(RUNHandle,'BusyAction'),'queue') |
---|
137 | disp('program stopped by user') |
---|
138 | break |
---|
139 | end |
---|
140 | file=filecell{iview,index_slice(ifile)}; |
---|
141 | [Path,Name,ext]=fileparts(file); |
---|
142 | detect=exist(file,'file'); % check the existence of the file |
---|
143 | if detect==0 |
---|
144 | lastfield='not found'; |
---|
145 | else |
---|
146 | datfile=dir(file); |
---|
147 | if isfield(datfile,'datenum') |
---|
148 | datnum(ifile)=datfile.datenum; |
---|
149 | filefound(ifile)={datfile.name}; |
---|
150 | end |
---|
151 | lastfield=''; |
---|
152 | [FileInfo,Object]=get_file_info(file); |
---|
153 | FileType{iview}=FileInfo.FileType; |
---|
154 | if strcmp(FileType{iview},'civx')||strcmp(FileType{iview},'civdata') |
---|
155 | if isfield(FileInfo,'CivStage') |
---|
156 | liststage={'civ','fix','patch'}; |
---|
157 | stagechoice=1+mod(FileInfo.CivStage-1,3); |
---|
158 | iter=1+floor((FileInfo.CivStage-1)/3); |
---|
159 | lastfield=[liststage{stagechoice} num2str(iter)]; |
---|
160 | %liststage={'civ1','fix1','patch1','civ2','fix2','patch2'}; |
---|
161 | %lastfield=liststage{FileInfo.CivStage}; |
---|
162 | end |
---|
163 | end |
---|
164 | lastfield=[FileType{iview} ', ' lastfield]; |
---|
165 | end |
---|
166 | Tabchar(1,i_slice)={['slice #' num2str(i_slice)]}; |
---|
167 | Tabchar(ifile+1,i_slice)={[file '...' lastfield]}; |
---|
168 | end |
---|
169 | end |
---|
170 | if isempty(filefound) |
---|
171 | if NbSlice>1 |
---|
172 | message=['no set of ' num2str(NbSlice) ' (NbSlices) files found']; |
---|
173 | else |
---|
174 | message='no file found'; |
---|
175 | end |
---|
176 | else |
---|
177 | datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files |
---|
178 | filefound=filefound(find(datnum)); |
---|
179 | [first,ind]=min(datnum); |
---|
180 | [last,indlast]=max(datnum); |
---|
181 | message={['oldest modification: ' filefound{ind} ' : ' datestr(first)];... |
---|
182 | ['latest modification: ' filefound{indlast} ' : ' datestr(last)]}; |
---|
183 | end |
---|
184 | if ~isempty(Tabchar) |
---|
185 | Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1); |
---|
186 | end |
---|
187 | end |
---|
188 | hfig=figure(iview); |
---|
189 | clf |
---|
190 | if iview>1 |
---|
191 | pos=get(iview-1,'Position'); |
---|
192 | pos(1)=pos(1)+(iview-1)*pos(1)/nbview; |
---|
193 | set(hfig,'Position',pos) |
---|
194 | end |
---|
195 | set(hfig,'name',['check_data_files:view= ' num2str(iview)]) |
---|
196 | set(hfig,'MenuBar','none')% suppress the menu bar |
---|
197 | set(hfig,'NumberTitle','off')%suppress the fig number in the title |
---|
198 | h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'}); |
---|
199 | hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message); |
---|
200 | end |
---|
201 | |
---|
202 | % 'open_uvmat': open with uvmat the field selected in the list of 'series/check_data_files' |
---|
203 | %------------------------------------------------------------------------ |
---|
204 | %function open_uvmat(hObject, eventdata) |
---|
205 | % |
---|
206 | % INPUT: |
---|
207 | % hObject: handle of uicontrol object containing the list |
---|
208 | % eventdata: not used |
---|
209 | function open_uvmat(hObject, eventdata) |
---|
210 | %------------------------------------------------------------------------ |
---|
211 | list=get(hObject,'String'); |
---|
212 | index=get(hObject,'Value'); |
---|
213 | rootroot=get(hObject,'UserData'); |
---|
214 | filename=list{index}; |
---|
215 | ind_dot=strfind(filename,'...'); |
---|
216 | if ~isempty(ind_dot) |
---|
217 | filename=filename(1:ind_dot-1); |
---|
218 | end |
---|
219 | filename=fullfile(rootroot,filename); |
---|
220 | if exist(filename,'file')%visualise the vel field if it exists |
---|
221 | uvmat(filename) |
---|
222 | set(gcbo,'Value',1) |
---|
223 | end |
---|