source: trunk/src/series/check_data_files.m @ 451

Last change on this file since 451 was 451, checked in by sommeria, 12 years ago

bugs repaired in aver_stat and check_data_file

sub_background largely modified. Tests needed
other functions not yet translated

File size: 9.0 KB
1%%'check_files': check the existence, type and status of the files selected by series.fig
3% function GUI_input=check_data_files(Param)
5%%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%%
7% GUI_input=list of options in the GUI series.fig needed for the function
10% In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series.
11% In batch mode, Param is the name of the corresponding xml file containing the same information
12% In the absence of input (as activated when the current Action is selected
13% in series), the function ouput GUI_input set the activation of the needed GUI elements
15% Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param)
16%    .InputTable: cell of input file names, (several lines for multiple input)
17%                      each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension}
18%    .OutputSubDir: name of the subdirectory for data outputs
19%    .OutputDir: directory for data outputs, including path
20%    .Action: .ActionName: name of the current activated function
21%             .ActionPath:   path of the current activated function
22%    .IndexRange: set the file or frame indices on which the action must be performed
23%    .FieldTransform: .TransformName: name of the selected transform function
24%                     .TransformPath:   path  of the selected transform function
25%                     .TransformHandle: corresponding function handle
26%    .InputFields: sub structure describing the input fields withfields
27%              .FieldName: name of the field
28%              .VelType: velocity type
29%              .FieldName_1: name of the second field in case of two input series
30%              .VelType_1: velocity type of the second field in case of two input series
31%    .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object)
34function GUI_input=check_data_files(Param)
36%% set the input elements needed on the GUI series when the action is selected in the menu ActionName
37if ~exist('Param','var') % case with no input parameter
38    GUI_input={'NbViewMax';'';...% max nbre of input file series (default='' , no limitation)
39        'AllowInputSort';'off';...% allow alphabetic sorting of the list of input files (options 'off'/'on', 'off' by default)
40        'NbSlice';'on'; ...%nbre of slices ('off' by default)
41        'VelType';'off';...% menu for selecting the velocity type (options 'off'/'one'/'two',  'off' by default)
42        'FieldName';'off';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
43        'FieldTransform'; 'off';...%can use a transform function
44        'ProjObject';'off';...%can use projection object(option 'off'/'on',
45        'Mask';'off';...%can use mask option   (option 'off'/'on', 'off' by default)
46        'OutputDirExt';'';...%set the output dir extension
47               ''};
48        return
51%% get input parameters, file names and indices
52% BATCH  case: read the xml file for batch case
53if ischar(Param) && ~isempty(find(regexp('Param','.xml$')))
54    Param=xml2struct(Param);
55    checkrun=0;
56% RUN case: parameters introduced as the input structure Param 
58    hseries=guidata(Param.hseries);%handles of the GUI series
59    WaitbarPos=get(hseries.waitbar_frame,'Position');%position of the waitbar on the GUI series
60    checkrun=1; % indicate the RUN option is used
62% get the set of input file names (cell array filecell), and the lists of
63% input file or frame indices i1_series,i2_series,j1_series,j2_series
65% filecell{iview,fileindex}: cell array representing the list of file names
66%        iview: line in the table corresponding to a given file series
67%        fileindex: file index within  the file series,
68% i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j
69% i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
70% set of frame indices used for movie or multimage input
71if ~isempty(j1_series)
72    frame_index=j1_series;
74    frame_index=i1_series;
77%% root input file(s) and type
84% numbers of slices and file indices
86if isfield(Param.IndexRange,'NbSlice')
87    NbSlice=Param.IndexRange.NbSlice;
89nbview=size(i1_series,1);%number of input file series (lines in InputTable)
90nbfield_j=size(i1_series,2); %nb of consecutive fields at each level(burst
91nbfield=nbfield_j*size(i1_series,3); %total number of files or frames
92nbfield_i=floor(nbfield/NbSlice);%total number of i indexes (adjusted to an integer number of slices)
93nbfield=nbfield_i*nbfield_j; %total number of fields after adjustement
95%determine the file type on each line from the first input file
98for iview=1:nbview
99    [FileType{iview},FileInfo{iview},Object{iview}]=get_file_type(filecell{iview,1});
100    CheckImage{iview}=~isempty(find(strcmp(FileType{iview},ImageTypeOptions)));% =1 for images
101    CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files
105for iview=1:nbview
106    if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')
107        info=aviinfo(filecell{iview,1});
108        message{1}=info.Filename;
109        message{2}=info.FileModDate;
110        message{3}=[num2str(info.FramesPerSecond) ' frames/s '];
111        message{4}=info.ImageType;
112        message{5}=['  compression' info.VideoCompression];
113        message{6}=[ 'quality ' num2str(info.Quality)];   
114        Tabchar=message;
115    else
116        Tabchar={};
117        %LOOP ON SLICES
118        for i_slice=1:NbSlice
119            index_slice=i_slice:NbSlice:nbfield;
120            filefound={};
121            datnum=zeros(1,nbfield_j);
122            for ifile=1:nbfield_i
123                stopstate=get(hseries.RUN,'BusyAction');
124                if isequal(stopstate,'queue')% enable STOP command
125                    update_waitbar(hseries.waitbar_frame,WaitbarPos,ifile/nbfield_i)         
126                    file=filecell{iview,index_slice(ifile)};
127                    [Path,Name,ext]=fileparts(file);
128                    detect=exist(file,'file'); % check the existence of the file
129                    if detect==0
130%                         count=count+1;
131                        lastfield='not found';
132                    else
133                        datfile=dir(file);
134                        if isfield(datfile,'datenum')
135                            datnum(ifile)=datfile.datenum;
136                            filefound(ifile)={};
137                        end                     
138                        lastfield='';
139                        [FileType,FileInfo,Object]=get_file_type(file);
140                        if strcmp(FileType,'civx')||strcmp(FileType,'civdata')
141                            if isfield(FileInfo,'CivStage')
142                            liststage={'civ1','fix1','patch1','civ2','fix2','patch2'};
143                            lastfield=liststage{FileInfo.CivStage};
144                            end
145                        end
146                        lastfield=[FileType ', ' lastfield];                   
147                    end
148                    Tabchar(1,i_slice)={['slice #' num2str(i_slice)]};
149                    Tabchar(ifile+1,i_slice)={[file '...' lastfield]};
150                end
151            end
152        end
153        if isempty(filefound)
154            if NbSlice>1
155                message=['no set of ' num2str(NbSlice) ' (NbSlices) files found'];
156            else
157                 message='no file found';
158            end
159        else
160            datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files
161            filefound=filefound(find(datnum));
162            [first,ind]=min(datnum);
163            [last,indlast]=max(datnum);
164            message={['oldest modification:  ' filefound{ind} ' : ' datestr(first)];...
165                ['latest modification:  ' filefound{indlast} ' : ' datestr(last)]};
166        end
167        if ~isempty(Tabchar)
168          Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1);
169        end
170    end
171    hfig=figure(iview);
172    clf
173    if iview>1
174        pos=get(iview-1,'Position');
175        pos(1)=pos(1)+(iview-1)*pos(1)/nbview;
176        set(hfig,'Position',pos)
177    end
178    set(hfig,'name',['check_data_files:view= ' num2str(iview)])
179    set(hfig,'MenuBar','none')% suppress the menu bar
180    set(hfig,'NumberTitle','off')%suppress the fig number in the title
181    h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'});
182    hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message);
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