source: trunk/src/series/check_data_files.m @ 977

Last change on this file since 977 was 977, checked in by g7moreau, 4 years ago
  • Update Copyright 2008-2017 notice
File size: 10.7 KB
Line 
1%%'check_data_files': check the existence, type and status of the files selected by series.fig
2%------------------------------------------------------------------------
3% function GUI_input=check_data_files(Param)
4%
5%%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%%
6%OUTPUT
7% GUI_input=list of options in the GUI series.fig needed for the function
8%
9%INPUT:
10% In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series.
11% In batch mode, Param is the name of the corresponding xml file containing the same information
12% In the absence of input (as activated when the current Action is selected
13% in series), the function ouput GUI_input set the activation of the needed GUI elements
14%
15% Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param)
16%    .InputTable: cell of input file names, (several lines for multiple input)
17%                      each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension}
18%    .OutputSubDir: name of the subdirectory for data outputs
19%    .OutputDir: directory for data outputs, including path
20%    .Action: .ActionName: name of the current activated function
21%             .ActionPath:   path of the current activated function
22%    .IndexRange: set the file or frame indices on which the action must be performed
23%    .FieldTransform: .TransformName: name of the selected transform function
24%                     .TransformPath:   path  of the selected transform function
25%                     .TransformHandle: corresponding function handle
26%    .InputFields: sub structure describing the input fields withfields
27%              .FieldName: name of the field
28%              .VelType: velocity type
29%              .FieldName_1: name of the second field in case of two input series
30%              .VelType_1: velocity type of the second field in case of two input series
31%    .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object)
32%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
33
34%=======================================================================
35% Copyright 2008-2017, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France
36%   http://www.legi.grenoble-inp.fr
37%   Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr
38%
39%     This file is part of the toolbox UVMAT.
40%
41%     UVMAT is free software; you can redistribute it and/or modify
42%     it under the terms of the GNU General Public License as published
43%     by the Free Software Foundation; either version 2 of the license,
44%     or (at your option) any later version.
45%
46%     UVMAT is distributed in the hope that it will be useful,
47%     but WITHOUT ANY WARRANTY; without even the implied warranty of
48%     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
49%     GNU General Public License (see LICENSE.txt) for more details.
50%=======================================================================
51
52function ParamOut=check_data_files(Param)
53
54%% input preparation mode (no RUN)
55if isstruct(Param) && isequal(Param.Action.RUN,0)
56    ParamOut.AllowInputSort='off';% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default)
57    ParamOut.WholeIndexRange='off';% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default)
58    ParamOut.NbSlice='on';%nbre of slices ('off' by default)
59    ParamOut.VelType='off';% menu for selecting the velocity type (options 'off'/'one'/'two',  'off' by default)
60    ParamOut.FieldName='off';% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
61    ParamOut.FieldTransform = 'off';%can use a transform function
62    ParamOut.ProjObject='off';%can use projection object(option 'off'/'on',
63    ParamOut.Mask='off';%can use mask option   (option 'off'/'on', 'off' by default)
64    ParamOut.OutputSubDirMode='none'; %(options 'none'/'custom'/'auto'/'first'/'last','auto' by default)
65    %                      'none' =no output files
66    return
67end
68%%%%%%%%%%%%  STANDARD PART  %%%%%%%%%%%%
69
70%% read input parameters from an xml file if input is a file name (batch mode)
71checkrun=1;
72if ischar(Param)
73    Param=xml2struct(Param);% read Param as input file (batch case)
74    checkrun=0;
75end
76hseries=findobj(allchild(0),'Tag','series');
77RUNHandle=findobj(hseries,'Tag','RUN');%handle of RUN button in GUI series
78WaitbarHandle=findobj(hseries,'Tag','Waitbar');%handle of waitbar in GUI series
79
80%% root input file(s) and type
81RootPath=Param.InputTable(:,1);
82RootFile=Param.InputTable(:,3);
83SubDir=Param.InputTable(:,2);
84NomType=Param.InputTable(:,4);
85FileExt=Param.InputTable(:,5);
86[filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param);
87if isempty(i1_series)
88    return
89end
90%%%%%%%%%%%%
91% The cell array filecell is the list of input file names, while
92% filecell{iview,fileindex}:
93%        iview: line in the table corresponding to a given file series
94%        fileindex: file index within  the file series,
95% i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j
96% i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
97%%%%%%%%%%%%
98NbSlice=1;%default
99if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice)
100    NbSlice=Param.IndexRange.NbSlice;
101end
102nbview=numel(i1_series);%number of input file series (lines in InputTable)
103nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices)
104nbfield_i=size(i1_series{1},2); %nb of fields for the i index
105nbfield=nbfield_j*nbfield_i; %total number of fields
106nbfield_i=floor(nbfield/NbSlice);%total number of  indexes in a slice (adjusted to an integer number of slices)
107nbfield=nbfield_i*NbSlice; %total number of fields after adjustement
108
109%determine the file type on each line from the first input file
110ImageTypeOptions={'image','multimage','mmreader','video'};
111NcTypeOptions={'netcdf','civx','civdata'};
112for iview=1:nbview
113    [FileInfo{iview},Object{iview}]=get_file_info(filecell{iview,1});
114    FileType{iview}=FileInfo{iview}.FileType;
115    CheckImage{iview}=~isempty(find(strcmp(FileType{iview},ImageTypeOptions)));% =1 for images
116    CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files
117end
118
119%% MAIN LOOP ON VIEWS (INPUT LINES)
120for iview=1:nbview
121    if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')||isequal(FileType{iview},'multimage')
122        [FileInfo]=get_file_info(filecell{iview,1});
123        Tabchar{1}=filecell{iview,1};%info.Filename;
124        Tabchar{2}='';
125        Tabchar{3}=[num2str(FileInfo.FrameRate) ' frames/s '];
126        message='';
127    else
128        Tabchar={};
129        %LOOP ON SLICES
130        for i_slice=1:NbSlice
131            index_slice=i_slice:NbSlice:nbfield;
132            filefound={};
133            datnum=zeros(1,nbfield_j);
134            for ifile=1:nbfield_i
135                update_waitbar(WaitbarHandle,ifile/nbfield_i)
136                if ishandle(RUNHandle) && ~strcmp(get(RUNHandle,'BusyAction'),'queue')
137                    disp('program stopped by user')
138                    break
139                end
140                file=filecell{iview,index_slice(ifile)};
141                [Path,Name,ext]=fileparts(file);
142                detect=exist(file,'file'); % check the existence of the file
143                if detect==0
144                    lastfield='not found';
145                else
146                    datfile=dir(file);
147                    if isfield(datfile,'datenum')
148                        datnum(ifile)=datfile.datenum;
149                        filefound(ifile)={datfile.name};
150                    end
151                    lastfield='';
152                    [FileInfo,Object]=get_file_info(file);
153                    FileType{iview}=FileInfo.FileType;
154                    if strcmp(FileType{iview},'civx')||strcmp(FileType{iview},'civdata')
155                        if isfield(FileInfo,'CivStage')
156                            liststage={'civ','fix','patch'};
157                            stagechoice=1+mod(FileInfo.CivStage-1,3);
158                            iter=1+floor((FileInfo.CivStage-1)/3);
159                            lastfield=[liststage{stagechoice} num2str(iter)];
160                            %liststage={'civ1','fix1','patch1','civ2','fix2','patch2'};                       
161                            %lastfield=liststage{FileInfo.CivStage};                           
162                        end
163                    end
164                    lastfield=[FileType{iview} ', ' lastfield];
165                end
166                Tabchar(1,i_slice)={['slice #' num2str(i_slice)]};
167                Tabchar(ifile+1,i_slice)={[file '...' lastfield]};
168            end
169        end
170        if isempty(filefound)
171            if NbSlice>1
172                message=['no set of ' num2str(NbSlice) ' (NbSlices) files found'];
173            else
174                message='no file found';
175            end
176        else
177            datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files
178            filefound=filefound(find(datnum));
179            [first,ind]=min(datnum);
180            [last,indlast]=max(datnum);
181            message={['oldest modification:  ' filefound{ind} ' : ' datestr(first)];...
182                ['latest modification:  ' filefound{indlast} ' : ' datestr(last)]};
183        end
184        if ~isempty(Tabchar)
185            Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1);
186        end
187    end
188    hfig=figure(iview);
189    clf
190    if iview>1
191        pos=get(iview-1,'Position');
192        pos(1)=pos(1)+(iview-1)*pos(1)/nbview;
193        set(hfig,'Position',pos)
194    end
195    set(hfig,'name',['check_data_files:view= ' num2str(iview)])
196    set(hfig,'MenuBar','none')% suppress the menu bar
197    set(hfig,'NumberTitle','off')%suppress the fig number in the title
198    h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'});
199    hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message);
200end
201
202% 'open_uvmat': open with uvmat the  field selected in the list of 'series/check_data_files'
203%------------------------------------------------------------------------
204%function open_uvmat(hObject, eventdata)
205%
206% INPUT:
207% hObject: handle of uicontrol object containing the list
208% eventdata: not used
209function open_uvmat(hObject, eventdata)
210%------------------------------------------------------------------------
211list=get(hObject,'String');
212index=get(hObject,'Value');
213rootroot=get(hObject,'UserData');
214filename=list{index};
215ind_dot=strfind(filename,'...');
216if ~isempty(ind_dot)
217filename=filename(1:ind_dot-1);
218end
219filename=fullfile(rootroot,filename);
220if exist(filename,'file')%visualise the vel field if it exists
221    uvmat(filename)
222    set(gcbo,'Value',1)
223end
Note: See TracBrowser for help on using the repository browser.