[862] | 1 | %'civ2vel_3C': combine velocity fields from two cameras to get three velocity components
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[839] | 2 | %------------------------------------------------------------------------
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| 3 | % function ParamOut=civ2vel_3C(Param)
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| 4 | %
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| 5 | %OUTPUT
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| 6 | % ParamOut: sets options in the GUI series.fig needed for the function
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| 7 | %
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| 8 | %INPUT:
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| 9 | % In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series.
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| 10 | % In batch mode, Param is the name of the corresponding xml file containing the same information
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| 11 | % when Param.Action.RUN=0 (as activated when the current Action is selected
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| 12 | % in series), the function ouput paramOut set the activation of the needed GUI elements
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| 13 | %
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| 14 | % Param contains the elements:(use the menu bar command 'export/GUI config' in series to
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| 15 | % see the current structure Param)
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| 16 | % .InputTable: cell of input file names, (several lines for multiple input)
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| 17 | % each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension}
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| 18 | % .OutputSubDir: name of the subdirectory for data outputs
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| 19 | % .OutputDirExt: directory extension for data outputs
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| 20 | % .Action: .ActionName: name of the current activated function
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| 21 | % .ActionPath: path of the current activated function
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| 22 | % .ActionExt: fct extension ('.m', Matlab fct, '.sh', compiled Matlab fct
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| 23 | % .RUN =0 for GUI input, =1 for function activation
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| 24 | % .RunMode='local','background', 'cluster': type of function use
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| 25 | %
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| 26 | % .IndexRange: set the file or frame indices on which the action must be performed
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| 27 | % .InputFields: sub structure describing the input fields withfields
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| 28 | % .FieldName: name(s) of the field
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| 29 | % .VelType: velocity type
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| 30 | % .FieldName_1: name of the second field in case of two input series
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| 31 | % .VelType_1: velocity type of the second field in case of two input series
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| 32 | % .Coord_y: name of y coordinate variable
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| 33 | % .Coord_x: name of x coordinate variable'
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| 34 |
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| 35 | %=======================================================================
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| 36 | % Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France
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| 37 | % http://www.legi.grenoble-inp.fr
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| 38 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr
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| 39 | %
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| 40 | % This file is part of the toolbox UVMAT.
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| 41 | %
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| 42 | % UVMAT is free software; you can redistribute it and/or modify
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| 43 | % it under the terms of the GNU General Public License as published
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| 44 | % by the Free Software Foundation; either version 2 of the license,
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| 45 | % or (at your option) any later version.
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| 46 | %
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| 47 | % UVMAT is distributed in the hope that it will be useful,
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| 48 | % but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 49 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 50 | % GNU General Public License (see LICENSE.txt) for more details.
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| 51 | %=======================================================================
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| 52 |
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| 53 | function ParamOut=civ2vel_3C(Param)
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| 54 |
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| 55 | %% set the input elements needed on the GUI series when the function is selected in the menu ActionName or InputTable refreshed
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| 56 | if isstruct(Param) && isequal(Param.Action.RUN,0)
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[863] | 57 | ParamOut.AllowInputSort='off';% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default)
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[839] | 58 | ParamOut.WholeIndexRange='off';% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default)
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| 59 | ParamOut.NbSlice='off'; %nbre of slices ('off' by default)
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| 60 | ParamOut.VelType='one';% menu for selecting the velocity type (options 'off'/'one'/'two', 'off' by default)
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| 61 | ParamOut.FieldName='off';% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
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| 62 | ParamOut.FieldTransform = 'off';%use the phys transform function without choice
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| 63 | %ParamOut.TransformPath=fullfile(fileparts(which('uvmat')),'transform_field');% path to transform functions (needed for compilation only)
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[863] | 64 | ParamOut.ProjObject='on';%can use projection object(option 'off'/'on',
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[839] | 65 | ParamOut.Mask='off';%can use mask option (option 'off'/'on', 'off' by default)
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| 66 | ParamOut.OutputDirExt='.vel3C';%set the output dir extension
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[863] | 67 | ParamOut.OutputSubDirMode='two'; % the two first input lines are used to define the output subfolder
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[839] | 68 | ParamOut.OutputFileMode='NbInput';% '=NbInput': 1 output file per input file index, '=NbInput_i': 1 file per input file index i, '=NbSlice': 1 file per slice
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[863] | 69 | %check the input files
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[839] | 70 | first_j=[];
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[863] | 71 | if size(Param.InputTable,1)<2
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| 72 | msgbox_uvmat('WARNING',['two or three input file series are needed'])
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| 73 | end
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[839] | 74 | if isfield(Param.IndexRange,'first_j'); first_j=Param.IndexRange.first_j; end
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| 75 | PairString='';
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| 76 | if isfield(Param.IndexRange,'PairString'); PairString=Param.IndexRange.PairString; end
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| 77 | [i1,i2,j1,j2] = get_file_index(Param.IndexRange.first_i,first_j,PairString);
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| 78 | FirstFileName=fullfile_uvmat(Param.InputTable{1,1},Param.InputTable{1,2},Param.InputTable{1,3},...
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| 79 | Param.InputTable{1,5},Param.InputTable{1,4},i1,i2,j1,j2);
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| 80 | if ~exist(FirstFileName,'file')
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| 81 | msgbox_uvmat('WARNING',['the first input file ' FirstFileName ' does not exist'])
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| 82 | elseif isequal(size(Param.InputTable,1),1) && ~isfield(Param,'ProjObject')
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| 83 | msgbox_uvmat('WARNING','You may need a projection object of type plane for merge_proj')
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| 84 | end
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| 85 | return
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| 86 | end
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| 87 |
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| 88 | %%%%%%%%%%%% STANDARD PART (DO NOT EDIT) %%%%%%%%%%%%
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| 89 | ParamOut=[]; %default output
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| 90 | %% read input parameters from an xml file if input is a file name (batch mode)
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| 91 | checkrun=1;
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| 92 | if ischar(Param)
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| 93 | Param=xml2struct(Param);% read Param as input file (batch case)
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| 94 | checkrun=0;
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| 95 | end
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| 96 | hseries=findobj(allchild(0),'Tag','series');
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| 97 | RUNHandle=findobj(hseries,'Tag','RUN');%handle of RUN button in GUI series
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| 98 | WaitbarHandle=findobj(hseries,'Tag','Waitbar');%handle of waitbar in GUI series
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| 99 |
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[863] | 100 |
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| 101 | %% root input file(s) name, type and index series
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| 102 | RootPath=Param.InputTable(:,1);
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| 103 | RootFile=Param.InputTable(:,3);
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| 104 | SubDir=Param.InputTable(:,2);
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| 105 | NomType=Param.InputTable(:,4);
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| 106 | FileExt=Param.InputTable(:,5);
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| 107 | hdisp=disp_uvmat('WAITING...','checking the file series',checkrun);
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| 108 | [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param);
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| 109 | if ~isempty(hdisp),delete(hdisp),end;
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| 110 | %%%%%%%%%%%%
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| 111 | % The cell array filecell is the list of input file names, while
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| 112 | % filecell{iview,fileindex}:
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| 113 | % iview: line in the table corresponding to a given file series
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| 114 | % fileindex: file index within the file series,
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| 115 | % i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j
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| 116 | % i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
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| 117 | %%%%%%%%%%%%
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| 118 | NbView=numel(i1_series);%number of input file series (lines in InputTable)
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| 119 | NbField_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices)
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| 120 | NbField_i=size(i1_series{1},2); %nb of fields for the i index
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| 121 | NbField=NbField_j*NbField_i; %total number of fields
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| 122 |
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[839] | 123 | %% define the directory for result file (with path=RootPath{1})
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| 124 | OutputDir=[Param.OutputSubDir Param.OutputDirExt];% subdirectory for output files
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[863] | 125 | %
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[839] | 126 | % if ~isfield(Param,'InputFields')
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| 127 | % Param.InputFields.FieldName='';
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| 128 | % end
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| 129 |
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| 130 | %% calibration data and timing: read the ImaDoc files
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| 131 | [XmlData,NbSlice_calib,time,errormsg]=read_multimadoc(RootPath,SubDir,RootFile,FileExt,i1_series,i2_series,j1_series,j2_series);
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| 132 | if size(time,1)>1
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| 133 | diff_time=max(max(diff(time)));
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[863] | 134 | if diff_time>0
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[839] | 135 | disp_uvmat('WARNING',['times of series differ by (max) ' num2str(diff_time) ': the mean time is chosen in result'],checkrun)
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[863] | 136 | end
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[839] | 137 | end
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| 138 | if ~isempty(errormsg)
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| 139 | disp_uvmat('WARNING',errormsg,checkrun)
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| 140 | end
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[863] | 141 | time=mean(time,1); %averaged time taken for the merged field
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[839] | 142 | if isfield(XmlData{1},'GeometryCalib')
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[863] | 143 | tsaiA=XmlData{1}.GeometryCalib;
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| 144 | else
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| 145 | disp_uvmat('ERROR','no geometric calibration available for image A',checkrun)
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| 146 | return
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| 147 | end
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| 148 | if isfield(XmlData{2},'GeometryCalib')
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| 149 | tsaiB=XmlData{2}.GeometryCalib;
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| 150 | else
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| 151 | disp_uvmat('ERROR','no geometric calibration available for image B',checkrun)
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| 152 | return
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| 153 | end
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[839] | 154 | [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param);
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| 155 |
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[862] | 156 | %% grid of physical positions (given by projection plane)
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| 157 | if ~Param.CheckObject
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[863] | 158 | disp_uvmat('ERROR','a projection plane with interpolation is needed',checkrun)
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| 159 | return
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[862] | 160 | end
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| 161 | ObjectData=Param.ProjObject;
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[863] | 162 | xI=ObjectData.RangeX(1):ObjectData.DX:ObjectData.RangeX(2);
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| 163 | yI=ObjectData.RangeY(1):ObjectData.DY:ObjectData.RangeY(2);
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| 164 | [XI,YI]=meshgrid(xI,yI);
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| 165 | U=zeros(size(XI,1),size(XI,2));
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| 166 | V=zeros(size(XI,1),size(XI,2));
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| 167 | W=zeros(size(XI,1),size(XI,2));
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[862] | 168 |
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[863] | 169 | %% MAIN LOOP ON FIELDS
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| 170 | warning off
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[864] | 171 | if NbField<2 && length(filecell{:,1})>2
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| 172 | disp_uvmat('ERROR','you need at least 2 images to compute the mean position for the stereo.',checkrun)
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| 173 | return
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| 174 | end
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| 175 | for index=1:NbField-1
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[863] | 176 | update_waitbar(WaitbarHandle,index/NbField)
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[839] | 177 | if ~isempty(RUNHandle) && ~strcmp(get(RUNHandle,'BusyAction'),'queue')
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| 178 | disp('program stopped by user')
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| 179 | return
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| 180 | end
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| 181 |
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| 182 | %%%%%%%%%%%%%%%% loop on views (input lines) %%%%%%%%%%%%%%%%
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| 183 | Data=cell(1,NbView);%initiate the set Data
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| 184 | timeread=zeros(1,NbView);
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[864] | 185 |
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| 186 | %get Xphys,Yphys,Zphys from 1 or 2 stereo folders. Positions are taken
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| 187 | %at the middle between to time step
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| 188 | clear ZItemp
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| 189 | ZItemp=zeros(size(XI,1),size(XI,2),2);
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| 190 | for indextemp=index:index+1;
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| 191 | if NbView==3 % if there is only 1 stereo folder, extract directly Xphys,Yphys and Zphys
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| 192 |
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| 193 | [Data{3},tild,errormsg] = nc2struct(filecell{3,indextemp});
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| 194 |
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| 195 | if exist('Data{3}.Civ3_FF','var') % FF is present, remove wrong vector
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| 196 | temp=find(Data{3}.Civ3_FF==0);
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| 197 | Zphys=Data{3}.Zphys(temp);
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| 198 | Yphys=Data{3}.Yphys(temp);
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| 199 | Xphys=Data{3}.Xphys(temp);
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| 200 | else
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| 201 | Zphys=Data{3}.Zphys;
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| 202 | Yphys=Data{3}.Yphys;
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| 203 | Xphys=Data{3}.Xphys;
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| 204 | end
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| 205 |
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| 206 |
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| 207 |
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| 208 | elseif NbView==4 % is there is 2 stereo folders, get global U and V and compute Zphys
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| 209 |
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| 210 |
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| 211 | %test if the seconde camera is the same for both folder
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| 212 | for i=3:4
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| 213 | indpt(i)=strfind(Param.InputTable{i,2},'.'); % indice of the "." is the folder name 1
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| 214 | indline(i)=strfind(Param.InputTable{i,2},'-'); % indice of the "-" is the folder name1
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| 215 | camname{i}=Param.InputTable{i,2}(indline(i)+1:indpt(i)-1);% extract the second camera name
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| 216 | end
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| 217 |
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| 218 | if strcmp(camname{3},camname{4})==0
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| 219 | disp_uvmat('ERROR','The 2 stereo folders should have the same camera for the second position',checkrun)
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| 220 | return
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| 221 | end
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| 222 |
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| 223 | [Data{3},tild,errormsg] = nc2struct(filecell{3,indextemp});
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| 224 | if exist('Data{3}.Civ3_FF','var') % if FF is present, remove wrong vector
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| 225 | temp=find(Data{3}.Civ3_FF==0);
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| 226 | Xmid3=Data{3}.Xmid(temp);
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| 227 | Ymid3=Data{3}.Ymid(temp);
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| 228 | U3=Data{3}.Uphys(temp);
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| 229 | V3=Data{3}.Vphys(temp);
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| 230 | else
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| 231 | Xmid3=Data{3}.Xmid;
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| 232 | Ymid3=Data{3}.Ymid;
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| 233 | U3=Data{3}.Uphys;
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| 234 | V3=Data{3}.Vphys;
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| 235 | end
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| 236 | %temporary gridd of merging the 2 stereos datas
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| 237 | [xq,yq] = meshgrid(min(Xmid3+(U3)/2):(max(Xmid3+(U3)/2)-min(Xmid3+(U3)/2))/128:max(Xmid3+(U3)/2),min(Ymid3+(V3)/2):(max(Ymid3+(V3)/2)-min(Ymid3+(V3)/2))/128:max(Ymid3+(V3)/2));
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| 238 |
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| 239 | %1st folder : interpolate the first camera (Dalsa1) points on the second (common) camera
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| 240 | %(Dalsa 3)
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| 241 | x3Q=griddata(Xmid3+(U3)/2,Ymid3+(V3)/2,Xmid3-(U3)/2,xq,yq);
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| 242 | y3Q=griddata(Xmid3+(U3)/2,Ymid3+(V3)/2,Ymid3-(V3)/2,xq,yq);
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| 243 |
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| 244 |
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| 245 | [Data{4},tild,errormsg] = nc2struct(filecell{4,indextemp});
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| 246 | if exist('Data{4}.Civ3_FF','var') % if FF is present, remove wrong vector
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| 247 | temp=find(Data{4}.Civ3_FF==0);
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| 248 | Xmid4=Data{4}.Xmid(temp);
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| 249 | Ymid4=Data{4}.Ymid(temp);
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| 250 | U4=Data{4}.Uphys(temp);
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| 251 | V4=Data{4}.Vphys(temp);
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| 252 | else
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| 253 | Xmid4=Data{4}.Xmid;
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| 254 | Ymid4=Data{4}.Ymid;
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| 255 | U4=Data{4}.Uphys;
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| 256 | V4=Data{4}.Vphys;
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| 257 | end
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| 258 |
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| 259 | %2nd folder :interpolate the first camera (Dalsa2) points on the second (common) camera
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| 260 | %(Dalsa 3)
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| 261 | x4Q=griddata(Xmid4+(U4)/2,Ymid4+(V4)/2,Xmid4-(U4)/2,xq,yq);
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| 262 | y4Q=griddata(Xmid4+(U4)/2,Ymid4+(V4)/2,Ymid4-(V4)/2,xq,yq);
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| 263 |
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| 264 | xmid=reshape((x4Q+x3Q)/2,length(xq(:,1)).*length(xq(1,:)),1);
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| 265 | ymid=reshape((y4Q+y3Q)/2,length(yq(:,1)).*length(yq(1,:)),1);
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| 266 | u=reshape(x4Q-x3Q,length(xq(:,1)).*length(xq(1,:)),1);
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| 267 | v=reshape(y4Q-y3Q,length(yq(:,1)).*length(yq(1,:)),1);
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| 268 |
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| 269 |
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| 270 | [Zphys,Xphys,Yphys,error]=shift2z(xmid, ymid, u, v,XmlData); %get Xphy,Yphy and Zphys
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| 271 | %remove NaN
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| 272 | tempNaN=isnan(Zphys);tempind=find(tempNaN==1);
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| 273 | Zphys(tempind)=[];
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| 274 | Xphys(tempind)=[];
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| 275 | Yphys(tempind)=[];
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| 276 | error(tempind)=[];
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| 277 |
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| 278 | end
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| 279 |
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| 280 |
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| 281 |
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| 282 |
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| 283 | ZItemp(:,:,indextemp)=griddata(Xphys,Yphys,Zphys,XI,YI); %interpolation on the choosen gridd
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| 284 |
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| 285 | end
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| 286 | ZI=mean(ZItemp,3); %mean between two the two time step
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| 287 |
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[863] | 288 | [Xa,Ya]=px_XYZ(XmlData{1}.GeometryCalib,XI,YI,ZI);% set of image coordinates on view a
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| 289 | [Xb,Yb]=px_XYZ(XmlData{2}.GeometryCalib,XI,YI,ZI);% set of image coordinates on view b
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| 290 |
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| 291 | %trouver z
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| 292 | % trouver les coordonnées px sur chaque image.
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| 293 | %A=
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| 294 | for iview=1:2
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[839] | 295 | %% reading input file(s)
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[863] | 296 | [Data{iview},tild,errormsg]=read_civdata(filecell{iview,index},{'vec(U,V)'},'*');
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[839] | 297 | if ~isempty(errormsg)
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| 298 | disp_uvmat('ERROR',['ERROR in civ2vel_3C/read_field/' errormsg],checkrun)
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| 299 | return
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| 300 | end
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| 301 | % get the time defined in the current file if not already defined from the xml file
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[863] | 302 | if isfield(Data{iview},'Time')&& isequal(Data{iview}.Time,Data{1}.Time)
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| 303 | Time=Data{iview}.Time;
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| 304 | else
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| 305 | disp_uvmat('ERROR','Time undefined or not synchronous',checkrun)
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| 306 | return
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[839] | 307 | end
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[863] | 308 | if isfield(Data{iview},'Dt')&& isequal(Data{iview}.Dt,Data{1}.Dt)
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| 309 | Dt=Data{iview}.Dt;
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| 310 | else
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| 311 | disp_uvmat('ERROR','Dt undefined or not synchronous',checkrun)
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| 312 | return
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[839] | 313 | end
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| 314 | end
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[864] | 315 | %remove wrong vector
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| 316 | temp=find(Data{1}.FF==0);
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| 317 | X1=Data{1}.X(temp);
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| 318 | Y1=Data{1}.Y(temp);
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| 319 | U1=Data{1}.U(temp);
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| 320 | V1=Data{1}.V(temp);
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| 321 |
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| 322 | Ua=griddata(X1,Y1,U1,Xa,Ya);
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| 323 | Va=griddata(X1,Y1,V1,Xa,Ya);
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[863] | 324 | A=get_coeff(XmlData{1}.GeometryCalib,Xa,Ya,YI,YI,ZI);
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| 325 |
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[864] | 326 |
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| 327 | temp=find(Data{2}.FF==0);
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| 328 | X2=Data{2}.X(temp);
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| 329 | Y2=Data{2}.Y(temp);
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| 330 | U2=Data{2}.U(temp);
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| 331 | V2=Data{2}.V(temp);
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| 332 | Ub=griddata(X2,Y2,U2,Xb,Yb);
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| 333 | Vb=griddata(X2,Y2,V2,Xb,Yb);
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[863] | 334 | B=get_coeff(XmlData{2}.GeometryCalib,Xb,Yb,YI,YI,ZI);
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| 335 | S=ones(size(XI,1),size(XI,2),3);
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| 336 | D=ones(size(XI,1),size(XI,2),3,3);
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| 337 | S(:,:,1)=A(:,:,1,1).*Ua+A(:,:,2,1).*Va+B(:,:,1,1).*Ub+B(:,:,2,1).*Vb;
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| 338 | S(:,:,2)=A(:,:,1,2).*Ua+A(:,:,2,2).*Va+B(:,:,1,2).*Ub+B(:,:,2,2).*Vb;
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| 339 | S(:,:,3)=A(:,:,1,3).*Ua+A(:,:,2,3).*Va+B(:,:,1,3).*Ub+B(:,:,2,3).*Vb;
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| 340 | D(:,:,1,1)=A(:,:,1,1).*A(:,:,1,1)+A(:,:,2,1).*A(:,:,2,1)+B(:,:,1,1).*B(:,:,1,1)+B(:,:,2,1).*B(:,:,2,1);
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| 341 | D(:,:,1,2)=A(:,:,1,1).*A(:,:,1,2)+A(:,:,2,1).*A(:,:,2,2)+B(:,:,1,1).*B(:,:,1,2)+B(:,:,2,1).*B(:,:,2,2);
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| 342 | D(:,:,1,3)=A(:,:,1,1).*A(:,:,1,3)+A(:,:,2,1).*A(:,:,2,3)+B(:,:,1,1).*B(:,:,1,3)+B(:,:,2,1).*B(:,:,2,3);
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| 343 | D(:,:,2,1)=A(:,:,1,2).*A(:,:,1,1)+A(:,:,2,2).*A(:,:,2,1)+B(:,:,1,2).*B(:,:,1,1)+B(:,:,2,2).*B(:,:,2,1);
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| 344 | D(:,:,2,2)=A(:,:,1,2).*A(:,:,1,2)+A(:,:,2,2).*A(:,:,2,2)+B(:,:,1,2).*B(:,:,1,2)+B(:,:,2,2).*B(:,:,2,2);
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| 345 | D(:,:,2,3)=A(:,:,1,2).*A(:,:,1,3)+A(:,:,2,2).*A(:,:,2,3)+B(:,:,1,2).*B(:,:,1,3)+B(:,:,2,2).*B(:,:,2,3);
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| 346 | D(:,:,3,1)=A(:,:,1,3).*A(:,:,1,1)+A(:,:,2,3).*A(:,:,2,1)+B(:,:,1,3).*B(:,:,1,1)+B(:,:,2,3).*B(:,:,2,1);
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| 347 | D(:,:,3,2)=A(:,:,1,3).*A(:,:,1,2)+A(:,:,2,3).*A(:,:,2,2)+B(:,:,1,3).*B(:,:,1,2)+B(:,:,2,3).*B(:,:,2,2);
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| 348 | D(:,:,3,3)=A(:,:,1,3).*A(:,:,1,3)+A(:,:,2,3).*A(:,:,2,3)+B(:,:,1,3).*B(:,:,1,3)+B(:,:,2,3).*B(:,:,2,3);
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| 349 | for indj=1:size(XI,1)
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| 350 | for indi=1:size(XI,2)
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| 351 | dxyz=squeeze(S(indj,indi,:))\squeeze(D(indj,indi,:,:));
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| 352 | U(indj,indi)=dxyz(1);
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| 353 | V(indj,indi)=dxyz(2);
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| 354 | W(indj,indi)=dxyz(3);
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| 355 | end
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| 356 | end
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| 357 | Error=zeros(size(XI,1),size(XI,2),4);
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| 358 | Error(:,:,1)=A(:,:,1,1).*U+A(:,:,1,2).*V+A(:,:,1,3).*W-Ua;
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| 359 | Error(:,:,2)=A(:,:,2,1).*U+A(:,:,2,2).*V+A(:,:,2,3).*W-Va;
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| 360 | Error(:,:,3)=B(:,:,1,1).*U+B(:,:,1,2).*V+B(:,:,1,3).*W-Ub;
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| 361 | Error(:,:,4)=B(:,:,2,1).*U+B(:,:,2,2).*V+B(:,:,2,3).*W-Vb;
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| 362 |
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[839] | 363 | %% generating the name of the merged field
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| 364 | i1=i1_series{1}(index);
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| 365 | if ~isempty(i2_series{end})
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| 366 | i2=i2_series{end}(index);
|
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| 367 | else
|
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| 368 | i2=i1;
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| 369 | end
|
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| 370 | j1=1;
|
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| 371 | j2=1;
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| 372 | if ~isempty(j1_series{1})
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| 373 | j1=j1_series{1}(index);
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| 374 | if ~isempty(j2_series{end})
|
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| 375 | j2=j2_series{end}(index);
|
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| 376 | else
|
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| 377 | j2=j1;
|
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| 378 | end
|
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| 379 | end
|
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[863] | 380 | OutputFile=fullfile_uvmat(RootPath{1},OutputDir,RootFile{1},'.nc','_1-2',i1,i2,j1,j2);
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| 381 |
|
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[839] | 382 | %% recording the merged field
|
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[863] | 383 | if index==1% initiate the structure at first index
|
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| 384 | MergeData.ListGlobalAttribute={'Conventions','Time','Dt'};
|
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[839] | 385 | MergeData.Conventions='uvmat';
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[863] | 386 | MergeData.Time=Time;
|
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| 387 | MergeData.Dt=Dt;
|
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| 388 | MergeData.ListVarName={'coord_x','coord_y','Z','U','V','W','Error'};
|
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| 389 | MergeData.VarDimName={'coord_x','coord_y',{'coord_y','coord_x'},{'coord_y','coord_x'}...
|
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| 390 | {'coord_y','coord_x'},{'coord_y','coord_x'},{'coord_y','coord_x'}};
|
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| 391 | MergeData.coord_x=xI;
|
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| 392 | MergeData.coord_y=yI;
|
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| 393 | MergeData.Z=ZI;
|
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| 394 | end
|
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| 395 | MergeData.U=U/Dt;
|
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| 396 | MergeData.V=V/Dt;
|
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| 397 | MergeData.W=W/Dt;
|
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| 398 | MergeData.Error=sqrt(sum(Error.*Error,3));
|
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| 399 | errormsg=struct2nc(OutputFile,MergeData);%save result file
|
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| 400 | if isempty(errormsg)
|
---|
| 401 | disp(['output file ' OutputFile ' written'])
|
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| 402 | else
|
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| 403 | disp(errormsg)
|
---|
| 404 | end
|
---|
[839] | 405 | end
|
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| 406 |
|
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| 407 |
|
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[863] | 408 | function A=get_coeff(Calib,X,Y,x,y,z)
|
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| 409 | R=(Calib.R)';%rotation matrix
|
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| 410 | T_z=Calib.Tx_Ty_Tz(3);
|
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| 411 | T=R(7)*x+R(8)*y+R(9)*z+T_z;
|
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| 412 | A(:,:,1,1)=(R(1)-R(7)*X)./T;
|
---|
| 413 | A(:,:,1,2)=(R(2)-R(8)*X)./T;
|
---|
| 414 | A(:,:,1,3)=(R(3)-R(9)*X)./T;
|
---|
| 415 | A(:,:,2,1)=(R(4)-R(7)*Y)./T;
|
---|
| 416 | A(:,:,2,2)=(R(5)-R(8)*Y)./T;
|
---|
| 417 | A(:,:,2,3)=(R(6)-R(9)*Y)./T;
|
---|
[839] | 418 |
|
---|
| 419 |
|
---|
| 420 |
|
---|
| 421 |
|
---|
[864] | 422 | function [z,Xphy,Yphy,error]=shift2z(xmid, ymid, u, v,XmlData)
|
---|
| 423 | z=0;
|
---|
| 424 | error=0;
|
---|
[839] | 425 |
|
---|
| 426 |
|
---|
[864] | 427 | %% first image
|
---|
| 428 | Calib_A=XmlData{1}.GeometryCalib;
|
---|
| 429 | R=(Calib_A.R)';
|
---|
| 430 | x_a=xmid- u/2;
|
---|
| 431 | y_a=ymid- u/2;
|
---|
| 432 | z_a=R(7)*x_a+R(8)*y_a+Calib_A.Tx_Ty_Tz(1,3);
|
---|
| 433 | Xa=(R(1)*x_a+R(2)*y_a+Calib_A.Tx_Ty_Tz(1,1))./z_a;
|
---|
| 434 | Ya=(R(4)*x_a+R(5)*y_a+Calib_A.Tx_Ty_Tz(1,2))./z_a;
|
---|
[839] | 435 |
|
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[864] | 436 | A_1_1=R(1)-R(7)*Xa;
|
---|
| 437 | A_1_2=R(2)-R(8)*Xa;
|
---|
| 438 | A_1_3=R(3)-R(9)*Xa;
|
---|
| 439 | A_2_1=R(4)-R(7)*Ya;
|
---|
| 440 | A_2_2=R(5)-R(8)*Ya;
|
---|
| 441 | A_2_3=R(6)-R(9)*Ya;
|
---|
| 442 | Det=A_1_1.*A_2_2-A_1_2.*A_2_1;
|
---|
| 443 | Dxa=(A_1_2.*A_2_3-A_2_2.*A_1_3)./Det;
|
---|
| 444 | Dya=(A_2_1.*A_1_3-A_1_1.*A_2_3)./Det;
|
---|
| 445 |
|
---|
| 446 | %% second image
|
---|
| 447 | Calib_B=XmlData{2}.GeometryCalib;
|
---|
| 448 | R=(Calib_B.R)';
|
---|
| 449 | x_b=xmid+ u/2;
|
---|
| 450 | y_b=ymid+ v/2;
|
---|
| 451 | z_b=R(7)*x_b+R(8)*y_b+Calib_B.Tx_Ty_Tz(1,3);
|
---|
| 452 | Xb=(R(1)*x_b+R(2)*y_b+Calib_B.Tx_Ty_Tz(1,1))./z_b;
|
---|
| 453 | Yb=(R(4)*x_b+R(5)*y_b+Calib_B.Tx_Ty_Tz(1,2))./z_b;
|
---|
| 454 | B_1_1=R(1)-R(7)*Xb;
|
---|
| 455 | B_1_2=R(2)-R(8)*Xb;
|
---|
| 456 | B_1_3=R(3)-R(9)*Xb;
|
---|
| 457 | B_2_1=R(4)-R(7)*Yb;
|
---|
| 458 | B_2_2=R(5)-R(8)*Yb;
|
---|
| 459 | B_2_3=R(6)-R(9)*Yb;
|
---|
| 460 | Det=B_1_1.*B_2_2-B_1_2.*B_2_1;
|
---|
| 461 | Dxb=(B_1_2.*B_2_3-B_2_2.*B_1_3)./Det;
|
---|
| 462 | Dyb=(B_2_1.*B_1_3-B_1_1.*B_2_3)./Det;
|
---|
| 463 |
|
---|
| 464 | %% result
|
---|
| 465 | Den=(Dxb-Dxa).*(Dxb-Dxa)+(Dyb-Dya).*(Dyb-Dya);
|
---|
| 466 | error=((Dyb-Dya).*u-(Dxb-Dxa).*v)./Den;
|
---|
| 467 |
|
---|
| 468 | xnew(1,:)=Dxa.*z+x_a;
|
---|
| 469 | xnew(2,:)=Dxb.*z+x_b;
|
---|
| 470 | ynew(1,:)=Dya.*z+y_a;
|
---|
| 471 | ynew(2,:)=Dyb.*z+y_b;
|
---|
| 472 |
|
---|
| 473 | Xphy=mean(xnew,1); %on moyenne les 2 valeurs
|
---|
| 474 | Yphy=mean(ynew,1);
|
---|
| 475 | z=((Dxb-Dxa).*u-(Dyb-Dya).*v)./Den;
|
---|
| 476 |
|
---|
| 477 |
|
---|