[647] | 1 | %'civ_input': function associated with the GUI 'civ_input.fig' to set the input parameters for civ_series |
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[597] | 2 | %------------------------------------------------------------------------ |
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[647] | 3 | % function ParamOut = civ_input(Param) |
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[597] | 4 | % |
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[647] | 5 | % OUPUT: |
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| 6 | % ParamOut: Matlab structure containing the parameters set by the GUI civ_input |
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| 7 | % |
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| 8 | % INPUT: |
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| 9 | % Param: Matlab structure containing the input parameters set by the GUI |
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[810] | 10 | |
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| 11 | %======================================================================= |
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| 12 | % Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France |
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| 13 | % http://www.legi.grenoble-inp.fr |
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| 14 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
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[647] | 15 | % |
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[597] | 16 | % This file is part of the toolbox UVMAT. |
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| 17 | % |
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| 18 | % UVMAT is free software; you can redistribute it and/or modify |
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[810] | 19 | % it under the terms of the GNU General Public License as published |
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| 20 | % by the Free Software Foundation; either version 2 of the license, |
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| 21 | % or (at your option) any later version. |
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[597] | 22 | % |
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| 23 | % UVMAT is distributed in the hope that it will be useful, |
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| 24 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 25 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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[810] | 26 | % GNU General Public License (see LICENSE.txt) for more details. |
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| 27 | %======================================================================= |
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| 28 | |
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[597] | 29 | function varargout = civ_input(varargin) |
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| 30 | |
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| 31 | gui_Singleton = 1; |
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| 32 | gui_State = struct('gui_Name', mfilename, ... |
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| 33 | 'gui_Singleton', gui_Singleton, ... |
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| 34 | 'gui_OpeningFcn', @civ_input_OpeningFcn, ... |
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| 35 | 'gui_OutputFcn', @civ_input_OutputFcn, ... |
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| 36 | 'gui_LayoutFcn', [] , ... |
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| 37 | 'gui_Callback', []); |
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| 38 | |
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[598] | 39 | if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback$','once')) |
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[597] | 40 | gui_State.gui_Callback = str2func(varargin{1}); |
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| 41 | end |
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| 42 | |
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| 43 | if nargout |
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| 44 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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| 45 | else |
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| 46 | gui_mainfcn(gui_State, varargin{:}); |
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| 47 | end |
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| 48 | |
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| 49 | % End initialization code - DO NOT EDIT |
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| 50 | |
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| 51 | %------------------------------------------------------------------------ |
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| 52 | % --- Executes just before civ_input is made visible. |
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| 53 | function civ_input_OpeningFcn(hObject, eventdata, handles, Param) |
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| 54 | %------------------------------------------------------------------------ |
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| 55 | % This function has no output args, see OutputFcn. |
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| 56 | |
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| 57 | %% General settings |
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| 58 | handles.output = Param; |
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| 59 | guidata(hObject, handles); % Update handles structure |
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| 60 | set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) |
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[774] | 61 | set(hObject,'WindowKeyPressFcn',{@keyboard_callback,handles})%set keyboard action function |
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[851] | 62 | %set(hObject,'KeyPressFcn',{@KeyPressFcn,handles})%set keyboard action function |
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[774] | 63 | set(handles.ref_i,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function |
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[851] | 64 | set(handles.ref_j,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function |
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[774] | 65 | %set(hObject,'WindowKeyPressFcn',{'keyboard_callback',handles})%set keyboard action function |
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| 66 | hseries=findobj(allchild(0),'Tag','series');% find the parent GUI 'series' |
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| 67 | hhseries=guidata(hseries); %handles of the elements in 'series' |
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| 68 | SeriesData=get(hseries,'UserData');% info stored in the GUI series |
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[597] | 69 | |
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[833] | 70 | %% set visibility options depending on the calling function (Param.Action.ActionName): |
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| 71 | if strcmp(Param.Action.ActionName,'civ_series')||strcmp(Param.Action.ActionName,'stereo_civ') |
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| 72 | set(handles.num_MaxDiff,'Visible','on') |
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[774] | 73 | set(handles.num_MaxVel,'Visible','on') |
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| 74 | set(handles.title_MaxVel,'Visible','on') |
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| 75 | set(handles.title_MaxDiff,'Visible','on') |
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| 76 | set(handles.num_Nx,'Visible','off') |
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| 77 | set(handles.num_Ny,'Visible','off') |
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| 78 | set(handles.title_Nx,'Visible','off') |
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| 79 | set(handles.title_Ny,'Visible','off') |
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| 80 | set(handles.num_CorrSmooth,'Style','popupmenu') |
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| 81 | set(handles.num_CorrSmooth,'Value',1) |
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| 82 | set(handles.num_CorrSmooth,'String',{'1';'2'}) |
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| 83 | set(handles.CheckThreshold,'Visible','on') |
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| 84 | set(handles.CheckDeformation,'Value',0)% desactivate (work in progress) |
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| 85 | set(handles.CheckDecimal,'Value',0)% desactivate (work in progress) |
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[599] | 86 | end |
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[833] | 87 | switch Param.Action.ActionName |
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| 88 | case 'stereo_civ' |
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| 89 | set(handles.ListCompareMode,'Visible','off') |
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| 90 | set(handles.PairIndices,'Visible','off') |
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| 91 | case 'civ_series' |
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| 92 | set(handles.ListCompareMode,'Visible','on') |
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| 93 | set(handles.PairIndices,'Visible','on') |
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| 94 | end |
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[599] | 95 | |
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| 96 | %% input file info |
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| 97 | NomTypeInput=Param.InputTable{1,4}; |
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[716] | 98 | FileType='image';%fdefault |
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| 99 | FileInfo=[]; |
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[711] | 100 | if isfield(SeriesData,'FileType')&&isfield(SeriesData,'FileInfo') |
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| 101 | FileType=SeriesData.FileType{1};%type of the first input file series |
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[774] | 102 | FileInfo=SeriesData.FileInfo{1};% info on the first input file series |
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[711] | 103 | else |
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[774] | 104 | set(hhseries.REFRESH,'BackgroundColor',[1 0 1])% indicate that the file input in series needs to be refreshed |
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[711] | 105 | end |
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[599] | 106 | |
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[774] | 107 | %% case of netcdf file as input, read the processing stage and look for corresponding images |
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[599] | 108 | ind_opening=0;%default |
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| 109 | NomTypeNc=''; |
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[851] | 110 | NomTypeImaA=NomTypeInput; |
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| 111 | iview_image=1;%line # for the input images |
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[599] | 112 | switch FileType |
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[781] | 113 | case {'image','multimage','video','mmreader','netcdf'} |
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[851] | 114 | % NomTypeImaA=NomTypeInput; |
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| 115 | % iview_image=1;%line # for the input images |
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[599] | 116 | case 'civdata' |
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[603] | 117 | if ~strcmp(Param.Action.ActionName,'civ_series') |
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| 118 | msgbox_uvmat('ERROR','bad input data file: open an image or a nc file from civ_series') |
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[851] | 119 | return |
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[603] | 120 | end |
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[599] | 121 | NomTypeNc=NomTypeInput; |
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| 122 | ind_opening=FileInfo.CivStage; |
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| 123 | if isempty(regexp(NomTypeInput,'[ab|AB|-]', 'once')) |
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| 124 | set(handles.ListCompareMode,'Value',2) %mode displacement advised if the nomencalture does not involve index pairs |
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| 125 | else |
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| 126 | set(handles.ListCompareMode,'Value',1) |
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| 127 | end |
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[774] | 128 | [Data,tild,tild,errormsg]=nc2struct(FileInfo.FileName,[]); |
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| 129 | if ~isempty(errormsg) |
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| 130 | msgbox_uvmat('ERROR',['error in netcdf input file: ' errormsg]) |
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| 131 | return |
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| 132 | end |
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[851] | 133 | [PathCiv1_ImageA,Civ1_ImageA,FileExtA]=fileparts(Data.Civ1_ImageA);%look for the source image A |
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| 134 | [PathCiv1_ImageB,Civ1_ImageB,FileExtA]=fileparts(Data.Civ1_ImageB);%look for the source image B |
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[774] | 135 | if isfield(Data,'Civ2_ImageA') |
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[642] | 136 | [PathCiv2_ImageA,Civ2_ImageA,FileExtA]=fileparts(Data.Civ2_ImageA); |
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| 137 | [PathCiv2_ImageB,Civ2_ImageB,FileExtA]=fileparts(Data.Civ2_ImageB); |
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[637] | 138 | end |
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| 139 | if size(Param.InputTable,1)==1 |
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[661] | 140 | series('display_file_name',hhseries,Data.Civ1_ImageA,'append');%append the image series to the input list |
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[637] | 141 | end |
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[604] | 142 | [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ1_ImageA); |
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| 143 | [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ1_ImageB); |
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[642] | 144 | iview_image=2;%line # for the input images |
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[599] | 145 | case 'civxdata'% case of civx data, |
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| 146 | msgbox_uvmat('ERROR','old civX convention, use the GUI civ') |
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| 147 | return |
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[761] | 148 | otherwise |
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[781] | 149 | msgbox_uvmat('ERROR','civ_series needs images, scalar fields in netcdf format, or civ data as input') |
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[761] | 150 | return |
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[599] | 151 | end |
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| 152 | |
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| 153 | %% reinitialise menus |
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| 154 | set(handles.ListPairMode,'Value',1) |
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| 155 | set(handles.ListPairMode,'String',{''}) |
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| 156 | set(handles.ListPairCiv1,'Value',1) |
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| 157 | set(handles.ListPairCiv1,'String',{''}) |
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| 158 | set(handles.ListPairCiv2,'Value',1) |
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| 159 | set(handles.ListPairCiv2,'String',{''}) |
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[598] | 160 | |
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| 161 | %% prepare the GUI with input parameters |
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[833] | 162 | % |
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[599] | 163 | set(handles.ref_i,'String',num2str(Param.IndexRange.first_i)) |
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| 164 | if isfield(Param.IndexRange,'first_j') |
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[603] | 165 | set(handles.ref_j,'String',num2str(Param.IndexRange.first_j)) |
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[597] | 166 | end |
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[599] | 167 | |
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[774] | 168 | %% set the menus of image pairs and default selection for civ_input %%%%%%%%%%%%%%%%%%% |
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| 169 | |
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| 170 | %% display the min and max indices for the whole file series |
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[776] | 171 | MaxIndex_i=Param.IndexRange.MaxIndex_i(iview_image); |
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| 172 | MinIndex_i=Param.IndexRange.MinIndex_i(iview_image); |
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| 173 | MaxIndex_j=1;%default |
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| 174 | MinIndex_j=1; |
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| 175 | if isfield(Param.IndexRange,'MaxIndex_j')&&isfield(Param.IndexRange,'MinIndex_j')... |
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| 176 | && numel(Param.IndexRange.MaxIndex_j')>=iview_image &&numel(Param.IndexRange.MinIndex_j')>=iview_image |
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| 177 | MaxIndex_j=Param.IndexRange.MaxIndex_j(iview_image); |
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| 178 | MinIndex_j=Param.IndexRange.MinIndex_j(iview_image); |
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[597] | 179 | end |
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[776] | 180 | %update the bounds if possible |
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| 181 | if isfield(SeriesData,'i1_series')&&numel(SeriesData.i1_series)>=iview_image |
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| 182 | if size(SeriesData.i1_series{iview_image},2)==2 && min(min(SeriesData.i1_series{iview_image}(:,1,:)))==0 |
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| 183 | MinIndex_j=1;% index j set to 1 by default |
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| 184 | MaxIndex_j=1; |
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| 185 | MinIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:), 1 )-1;% min ref index i detected in the series (corresponding to the first non-zero value of i1_series, except for zero index) |
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| 186 | MaxIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:),1,'last' )-1;%max ref index i detected in the series (corresponding to the last non-zero value of i1_series) |
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| 187 | else |
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| 188 | ref_i=squeeze(max(SeriesData.i1_series{iview_image}(1,:,:),[],2));% select ref_j index for each ref_i |
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| 189 | ref_j=squeeze(max(SeriesData.j1_series{iview_image}(1,:,:),[],3));% select ref_i index for each ref_j |
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| 190 | MinIndex_i=min(find(ref_i))-1; |
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| 191 | MaxIndex_i=max(find(ref_i))-1; |
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| 192 | MaxIndex_j=max(find(ref_j))-1; |
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| 193 | MinIndex_j=min(find(ref_j))-1; |
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| 194 | end |
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| 195 | end |
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[656] | 196 | if ~isfield(Param.IndexRange,'first_j')||isequal(MaxIndex_j,MinIndex_j)% no possibility of j pairs |
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[599] | 197 | set(handles.ListPairMode,'Value',1) |
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| 198 | set(handles.ListPairMode,'String',{'series(Di)'}) |
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| 199 | elseif MaxIndex_i==1 && MaxIndex_j>1% simple series in j |
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| 200 | set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)'}) |
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| 201 | if MaxIndex_j <= 10 |
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| 202 | set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large |
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| 203 | end |
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[635] | 204 | else |
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[599] | 205 | set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)';'series(Di)'})%multiple choice |
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| 206 | if strcmp(NomTypeNc,'_1-2_1') |
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| 207 | set(handles.ListPairMode,'Value',3)% advise 'series(Di)' |
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| 208 | elseif MaxIndex_j <= 10 |
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| 209 | set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large |
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| 210 | end |
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| 211 | end |
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| 212 | |
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| 213 | %% transfer the time from the GUI series, or use file index by default |
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| 214 | time=[]; |
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| 215 | TimeUnit='frame'; %default |
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| 216 | CoordUnit='';%default |
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| 217 | pxcm_search=1; |
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| 218 | if isfield(SeriesData,'Time') && ~isempty(SeriesData.Time{1}) |
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| 219 | time=SeriesData.Time{1}; |
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| 220 | end |
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[609] | 221 | if isfield(Param.IndexRange,'TimeUnit')&&~isempty(Param.IndexRange.TimeUnit) |
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| 222 | TimeUnit=Param.IndexRange.TimeUnit; |
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[599] | 223 | end |
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[851] | 224 | % if isfield(SeriesData,'TimeSource') |
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| 225 | % set(handles.TimeSource,'String',SeriesData.TimeSource) |
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| 226 | % end |
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[599] | 227 | if isfield(SeriesData,'GeometryCalib') |
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| 228 | tsai=SeriesData.GeometryCalib; |
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| 229 | if isfield(tsai,'fx_fy') |
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| 230 | pxcm_search=max(tsai.fx_fy(1),tsai.fx_fy(2));%pixels:cm estimated for the search range |
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| 231 | end |
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| 232 | if isfield(tsai,'CoordUnit') |
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| 233 | CoordUnit=tsai.CoordUnit; |
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| 234 | end |
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| 235 | end |
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| 236 | |
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| 237 | %% timing display |
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| 238 | %show the reference image edit box if relevant (not needed for movies or in the absence of time information |
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| 239 | if numel(time)>=2 % if there are at least two time values to define dt |
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| 240 | if size(time,1)<MaxIndex_i; |
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| 241 | msgbox_uvmat('WARNING','maximum i index restricted by the timing of the xml file'); |
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| 242 | elseif size(time,2)<MaxIndex_j |
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| 243 | msgbox_uvmat('WARNING','maximum j index restricted by the timing of the xml file'); |
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| 244 | end |
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| 245 | MaxIndex_i=min(size(time,1),MaxIndex_i);%possibly adjust the max index according to time data |
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| 246 | MaxIndex_j=min(size(time,2),MaxIndex_j); |
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[851] | 247 | set(handles.TimeSource,'String',Param.IndexRange.TimeSource); |
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[599] | 248 | else |
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[851] | 249 | set(handles.TimeSource,'String',''); %xml file not used for timing |
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[599] | 250 | TimeUnit='frame'; |
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| 251 | time=ones(MaxIndex_j-MinIndex_j+1,1)*(MinIndex_i:MaxIndex_i); |
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| 252 | time=time+0.001*(MinIndex_j:MaxIndex_j)'*ones(1,MaxIndex_i-MinIndex_i+1); |
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| 253 | end |
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| 254 | CivInputData.Time=time; |
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[637] | 255 | CivInputData.NomTypeIma=NomTypeImaA; |
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[599] | 256 | set(handles.civ_input,'UserData',CivInputData) |
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| 257 | set(handles.dt_unit,'String',['dt in m' TimeUnit]);%display dt in unit 10-3 of the time (e.g ms) |
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| 258 | set(handles.TimeUnit,'String',TimeUnit); |
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| 259 | set(handles.CoordUnit,'String',CoordUnit) |
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| 260 | set(handles.SearchRange,'UserData', pxcm_search); |
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| 261 | |
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[776] | 262 | % indicate the min and max indices i and j on the GUI |
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| 263 | set(handles.MinIndex_i,'String',num2str(MinIndex_i)) |
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| 264 | set(handles.MaxIndex_i,'String',num2str(MaxIndex_i)) |
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| 265 | set(handles.MinIndex_j,'String',num2str(MinIndex_j)) |
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| 266 | set(handles.MaxIndex_j,'String',num2str(MaxIndex_j)) |
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[668] | 267 | |
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[851] | 268 | |
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[774] | 269 | %% set the civ_input options, depending on the input file content if a nc file has been opened |
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| 270 | ListOptions={'CheckCiv1', 'CheckFix1' 'CheckPatch1', 'CheckCiv2', 'CheckFix2', 'CheckPatch2'}; |
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| 271 | checkbox=zeros(size(ListOptions));%default |
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[851] | 272 | checkrefresh=0; |
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[774] | 273 | if ind_opening==0 %case of image opening, start with Civ1 |
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| 274 | for index=1:numel(ListOptions) |
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| 275 | checkbox(index)=get(handles.(ListOptions{index}),'Value'); |
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| 276 | end |
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| 277 | index_max=find(checkbox, 1, 'last' ); |
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| 278 | if isempty(index_max),index_max=1;end |
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| 279 | for index=1:index_max |
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| 280 | set(handles.(ListOptions{index}),'Value',1)% select all operations starting from CIV1 |
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| 281 | end |
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[851] | 282 | else %case of netcdf file opening, start with the stage read in the file if the input file is being refreshed |
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| 283 | if isequal(get(hhseries.REFRESH,'BackgroundColor'),[1 1 0]) && ~isfield(Param.ActionInput,'ConfigSource') |
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| 284 | answer=msgbox_uvmat('INPUT_Y-N',['import the civ parameters from the netcdf file']); |
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| 285 | if strcmp(answer,'Yes') |
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| 286 | for index = 1:min(ind_opening,5) |
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| 287 | set(handles.(ListOptions{index}),'value',0) |
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| 288 | fill_civ_input(Data,handles); %fill civ_input with the parameters retrieved from an input Civ file |
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| 289 | end |
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| 290 | set(handles.ConfigSource,'String',FileInfo.FileName); |
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| 291 | set(handles.(ListOptions{min(ind_opening+1,6)}),'value',1) |
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| 292 | for index = ind_opening+2:6 |
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| 293 | set(handles.(ListOptions{index}),'value',0) |
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| 294 | end |
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| 295 | checkrefresh=1; |
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| 296 | end |
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[774] | 297 | end |
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[851] | 298 | if ind_opening>=3 |
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| 299 | set(handles.iterate,'Visible','on')% make visible the switch 'iterate/repet' for Civ2. |
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| 300 | else |
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| 301 | set(handles.iterate,'Visible','off') |
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[774] | 302 | end |
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| 303 | end |
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| 304 | |
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[851] | 305 | %% introduce the stored Civ parameters if available (from previous input or ImportConfig in series) |
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| 306 | if ~checkrefresh && isfield(Param,'ActionInput')&& strcmp(Param.ActionInput.Program,Param.Action.ActionName)% the program fits with the stored data |
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| 307 | fill_GUI(Param.ActionInput,hObject);%fill the GUI with the parameters retrieved from the input Param |
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| 308 | hcheckgrid=findobj(handles.civ_input,'Tag','CheckGrid'); |
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| 309 | for ilist=1:numel(hcheckgrid) |
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| 310 | if get(hcheckgrid(ilist),'Value')% if a grid is used, do not show Dx and Dy for an automatic grid |
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| 311 | hparent=get(hcheckgrid(ilist),'parent');%handles of the parent panel |
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| 312 | hchildren=get(hparent,'children'); |
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| 313 | handle_dx=findobj(hchildren,'tag','num_Dx'); |
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| 314 | handle_dy=findobj(hchildren,'tag','num_Dy'); |
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| 315 | handle_title_dx=findobj(hchildren,'tag','title_Dx'); |
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| 316 | handle_title_dy=findobj(hchildren,'tag','title_Dy'); |
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| 317 | set(handle_dx,'Visible','off'); |
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| 318 | set(handle_dy,'Visible','off'); |
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| 319 | set(handle_title_dy,'Visible','off'); |
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| 320 | set(handle_title_dx,'Visible','off'); |
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| 321 | end |
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| 322 | end |
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| 323 | end |
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| 324 | |
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[774] | 325 | %% set the reference indices from the input file indices |
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[852] | 326 | if ~(isfield(Param,'ActionInput') && isfield(Param.ActionInput,'ConfigSource')) |
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[774] | 327 | update_CivOptions(handles,ind_opening)% fill the menu of possible pairs |
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[851] | 328 | end |
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[774] | 329 | |
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| 330 | %% list the possible index pairs, depending on the option set in ListPairMode |
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| 331 | ListPairMode_Callback([], [], handles) |
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| 332 | ListPairCiv1_Callback(hObject, eventdata, handles) |
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| 333 | |
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[599] | 334 | %% set the GUI to modal: wait for OK to close |
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[598] | 335 | set(handles.civ_input,'WindowStyle','modal')% Make the GUI modal |
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[597] | 336 | drawnow |
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[598] | 337 | uiwait(handles.civ_input); |
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[597] | 338 | |
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[599] | 339 | |
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[597] | 340 | %------------------------------------------------------------------------ |
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| 341 | % --- Outputs from this function are returned to the command line. |
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| 342 | function varargout = civ_input_OutputFcn(hObject, eventdata, handles) |
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| 343 | %------------------------------------------------------------------------ |
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| 344 | % Get default command line output from handles structure |
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[668] | 345 | varargout{1}=[];% default output when civ_input is canceled (no 'OK') |
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| 346 | if ~isempty(handles) |
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| 347 | varargout{1} = handles.output; |
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| 348 | delete(handles.civ_input) |
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| 349 | end |
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[597] | 350 | |
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| 351 | % --- Executes when user attempts to close get_field. |
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[598] | 352 | function civ_input_CloseRequestFcn(hObject, eventdata, handles) |
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[597] | 353 | if isequal(get(handles.get_field, 'waitstatus'), 'waiting') |
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| 354 | % The GUI is still in UIWAIT, us UIRESUME |
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[598] | 355 | uiresume(handles.civ_input); |
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[597] | 356 | else |
---|
| 357 | % The GUI is no longer waiting, just close it |
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[598] | 358 | delete(handles.civ_input); |
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[597] | 359 | end |
---|
| 360 | |
---|
[851] | 361 | %------------------------------------------------------------------------ |
---|
| 362 | % --- Executes on button press in SetDefaultParam. |
---|
| 363 | %------------------------------------------------------------------------ |
---|
| 364 | function SetDefaultParam_Callback(hObject, eventdata, handles) |
---|
| 365 | |
---|
| 366 | hseries=findobj(allchild(0),'Name','series');% look for the GUI series |
---|
| 367 | hhseries=guidata(hseries);%handles of elements in the GUI series |
---|
| 368 | SeriesData=get(hseries,'UserData');%read parameters on the GUI series |
---|
| 369 | if isfield (SeriesData,'ActionInput') |
---|
| 370 | SeriesData=rmfield(SeriesData,'ActionInput');% remove recorded civ parameters |
---|
| 371 | end |
---|
| 372 | set(hseries,'UserData',SeriesData) |
---|
| 373 | series('ActionName_Callback',hObject,eventdata,hhseries); % |
---|
| 374 | |
---|
[597] | 375 | % ----------------------------------------------------------------------- |
---|
| 376 | % ----------------------------------------------------------------------- |
---|
| 377 | % --- Open the help html file |
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| 378 | function MenuHelp_Callback(hObject, eventdata, handles) |
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| 379 | % ----------------------------------------------------------------------- |
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[774] | 380 | web('http://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/wiki/UvmatHelp#Civ') |
---|
[597] | 381 | |
---|
| 382 | %------------------------------------------------------------------------ |
---|
| 383 | % --- Executes on carriage return on the subdir checkciv1 edit window |
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[604] | 384 | function Civ1_ImageB_Callback(hObject, eventdata, handles) |
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[597] | 385 | %------------------------------------------------------------------------ |
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[604] | 386 | SubDir=get(handles.Civ1_ImageB,'String'); |
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[597] | 387 | menu_str=get(handles.ListSubdirCiv1,'String');% read the list of subdirectories for update |
---|
| 388 | ichoice=find(strcmp(SubDir,menu_str),1); |
---|
| 389 | if isempty(ichoice) |
---|
| 390 | ilist=numel(menu_str); %select 'new...' in the menu |
---|
| 391 | else |
---|
| 392 | ilist=ichoice; |
---|
| 393 | end |
---|
| 394 | set(handles.ListSubdirCiv1,'Value',ilist)% select the selected subdir in the menu |
---|
| 395 | if get(handles.CheckCiv1,'Value')% if Civ1 is performed |
---|
[604] | 396 | set(handles.Civ2_ImageA,'String',SubDir);% set by default civ2 directory the same as civ1 |
---|
[597] | 397 | % set(handles.ListSubdirCiv2,'Value',ilist) |
---|
| 398 | else % if Civ1 data already exist |
---|
[774] | 399 | errormsg=find_netcpair_civ(handles,1); %update the list of available index pairs in the new directory |
---|
[597] | 400 | if ~isempty(errormsg) |
---|
| 401 | msgbox_uvmat('ERROR',errormsg) |
---|
| 402 | end |
---|
| 403 | end |
---|
| 404 | |
---|
| 405 | %------------------------------------------------------------------------ |
---|
| 406 | % --- Executes on carriage return on the SubDir checkciv1 edit window |
---|
[604] | 407 | function Civ2_ImageA_Callback(hObject, eventdata, handles) |
---|
[597] | 408 | %------------------------------------------------------------------------ |
---|
[604] | 409 | SubDir=get(handles.Civ1_ImageB,'String'); |
---|
[597] | 410 | menu_str=get(handles.ListSubdirCiv2,'String');% read the list of subdirectories for update |
---|
| 411 | ichoice=find(strcmp(SubDir,menu_str),1); |
---|
| 412 | if isempty(ichoice) |
---|
| 413 | ilist=numel(menu_str); %select 'new...' in the menu |
---|
| 414 | else |
---|
| 415 | ilist=ichoice; |
---|
| 416 | end |
---|
| 417 | set(handles.ListSubdirCiv2,'Value',ilist)% select the selected subdir in the menu |
---|
| 418 | %update the list of available pairs from netcdf files in the new directory |
---|
| 419 | if ~get(handles.CheckCiv2,'Value') && ~get(handles.CheckCiv1,'Value') && ~get(handles.CheckFix1,'Value') && ~get(handles.CheckPatch1,'Value') |
---|
| 420 | errormsg=find_netcpair_civ(handles,2); |
---|
| 421 | if ~isempty(errormsg) |
---|
| 422 | msgbox_uvmat('ERROR',errormsg) |
---|
| 423 | end |
---|
| 424 | end |
---|
| 425 | |
---|
| 426 | %------------------------------------------------------------------------ |
---|
| 427 | % --- Executes on button press in CheckCiv1. |
---|
| 428 | function CheckCiv1_Callback(hObject, eventdata, handles) |
---|
| 429 | %------------------------------------------------------------------------ |
---|
| 430 | update_CivOptions(handles,0) |
---|
| 431 | |
---|
| 432 | %------------------------------------------------------------------------ |
---|
| 433 | % --- Executes on button press in CheckFix1. |
---|
| 434 | function CheckFix1_Callback(hObject, eventdata, handles) |
---|
| 435 | %------------------------------------------------------------------------ |
---|
| 436 | update_CivOptions(handles,0) |
---|
| 437 | |
---|
| 438 | %------------------------------------------------------------------------ |
---|
| 439 | % --- Executes on button press in CheckPatch1. |
---|
| 440 | function CheckPatch1_Callback(hObject, eventdata, handles) |
---|
| 441 | %------------------------------------------------------------------------ |
---|
| 442 | update_CivOptions(handles,0) |
---|
| 443 | |
---|
| 444 | %------------------------------------------------------------------------ |
---|
| 445 | % --- Executes on button press in CheckCiv2. |
---|
| 446 | function CheckCiv2_Callback(hObject, eventdata, handles) |
---|
| 447 | %------------------------------------------------------------------------ |
---|
| 448 | update_CivOptions(handles,0) |
---|
| 449 | |
---|
| 450 | %------------------------------------------------------------------------ |
---|
| 451 | % --- Executes on button press in CheckFix2. |
---|
| 452 | function CheckFix2_Callback(hObject, eventdata, handles) |
---|
| 453 | %------------------------------------------------------------------------ |
---|
| 454 | update_CivOptions(handles,0) |
---|
| 455 | |
---|
| 456 | %------------------------------------------------------------------------ |
---|
| 457 | % --- Executes on button press in CheckPatch2. |
---|
| 458 | function CheckPatch2_Callback(hObject, eventdata, handles) |
---|
| 459 | %------------------------------------------------------------------------ |
---|
| 460 | update_CivOptions(handles,0) |
---|
| 461 | |
---|
| 462 | %------------------------------------------------------------------------ |
---|
| 463 | % --- activated by any checkbox controling the selection of Civ1,Fix1,Patch1,Civ2,Fix2,Patch2 |
---|
| 464 | function update_CivOptions(handles,opening) |
---|
| 465 | %------------------------------------------------------------------------ |
---|
[851] | 466 | if opening>0 |
---|
| 467 | set(handles.CheckCiv2,'UserData',opening)% store the info on the current status of the civ processing |
---|
| 468 | end |
---|
[597] | 469 | checkbox=zeros(1,6); |
---|
| 470 | checkbox(1)=get(handles.CheckCiv1,'Value'); |
---|
| 471 | checkbox(2)=get(handles.CheckFix1,'Value'); |
---|
| 472 | checkbox(3)=get(handles.CheckPatch1,'Value'); |
---|
| 473 | checkbox(4)=get(handles.CheckCiv2,'Value'); |
---|
| 474 | checkbox(5)=get(handles.CheckFix2,'Value'); |
---|
| 475 | checkbox(6)=get(handles.CheckPatch2,'Value'); |
---|
| 476 | if opening==0 |
---|
| 477 | errormsg=find_netcpair_civ(handles,1); % select the available netcdf files |
---|
| 478 | if ~isempty(errormsg) |
---|
| 479 | msgbox_uvmat('ERROR',errormsg) |
---|
| 480 | end |
---|
| 481 | end |
---|
[851] | 482 | if max(checkbox(4:6))>0% case of civ2 pair choice needed |
---|
[597] | 483 | set(handles.TitlePairCiv2,'Visible','on') |
---|
| 484 | set(handles.ListPairCiv2,'Visible','on') |
---|
| 485 | if ~opening |
---|
| 486 | errormsg=find_netcpair_civ(handles,2); % select the available netcdf files |
---|
| 487 | if ~isempty(errormsg) |
---|
| 488 | msgbox_uvmat('ERROR',errormsg) |
---|
| 489 | end |
---|
| 490 | end |
---|
| 491 | else |
---|
| 492 | set(handles.ListPairCiv2,'Visible','off') |
---|
| 493 | end |
---|
[851] | 494 | if max(checkbox(1:3))==0 && get(handles.CheckCiv2,'UserData')==6,% no operation asked before Civ2 and input file ready for civ3 |
---|
| 495 | set(handles.iterate,'Visible','on') |
---|
| 496 | else |
---|
| 497 | set(handles.iterate,'Visible','off') |
---|
| 498 | end |
---|
| 499 | |
---|
| 500 | %% set the visibility of the different panels |
---|
[597] | 501 | options={'Civ1','Fix1','Patch1','Civ2','Fix2','Patch2'}; |
---|
| 502 | for ilist=1:length(options) |
---|
| 503 | if checkbox(ilist) |
---|
| 504 | set(handles.(options{ilist}),'Visible','on') |
---|
| 505 | else |
---|
| 506 | set(handles.(options{ilist}),'Visible','off') |
---|
| 507 | end |
---|
| 508 | end |
---|
| 509 | |
---|
| 510 | %------------------------------------------------------------------------ |
---|
| 511 | % --- Executes on button press in OK: processing on local computer |
---|
| 512 | function OK_Callback(hObject, eventdata, handles) |
---|
| 513 | %------------------------------------------------------------------------ |
---|
| 514 | |
---|
[851] | 515 | ActionInput=read_GUI(handles.civ_input); |
---|
| 516 | |
---|
| 517 | %% correct inpput inconsistencies |
---|
| 518 | if isfield(ActionInput,'Civ1') |
---|
| 519 | checkeven=(mod(ActionInput.Civ1.CorrBoxSize,2)==0); |
---|
| 520 | ActionInput.Civ1.CorrBoxSize(checkeven)=ActionInput.Civ1.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values |
---|
| 521 | ActionInput.Civ1.SearchBoxSize=max(ActionInput.Civ1.SearchBoxSize,ActionInput.Civ1.CorrBoxSize+10);% insure that the search box size is large enough |
---|
| 522 | checkeven=(mod(ActionInput.Civ1.SearchBoxSize,2)==0); |
---|
| 523 | ActionInput.Civ1.SearchBoxSize(checkeven)=ActionInput.Civ1.SearchBoxSize(checkeven)+1;% set search box sizes to odd values |
---|
| 524 | end |
---|
| 525 | if isfield(ActionInput,'Civ2') |
---|
| 526 | checkeven=(mod(ActionInput.Civ2.CorrBoxSize,2)==0); |
---|
| 527 | ActionInput.Civ2.CorrBoxSize(checkeven)=ActionInput.Civ2.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values |
---|
| 528 | ActionInput.Civ2.SearchBoxSize=max(ActionInput.Civ2.SearchBoxSize,ActionInput.Civ2.CorrBoxSize+10); |
---|
| 529 | checkeven=(mod(ActionInput.Civ2.SearchBoxSize,2)==0); |
---|
| 530 | ActionInput.Civ2.SearchBoxSize(checkeven)=ActionInput.Civ2.SearchBoxSize(checkeven)+1;% set search box sizes to odd values |
---|
| 531 | end |
---|
| 532 | |
---|
| 533 | handles.output.ActionInput=ActionInput; |
---|
[822] | 534 | % correct mask or grid name for Windows system (replace '\' by '/') |
---|
| 535 | if isfield(handles.output.ActionInput,'Civ1') |
---|
| 536 | if isfield(handles.output.ActionInput.Civ1,'Mask') |
---|
| 537 | handles.output.ActionInput.Civ1.Mask=regexprep(handles.output.ActionInput.Civ1.Mask,'\','/'); |
---|
| 538 | end |
---|
| 539 | if isfield(handles.output.ActionInput.Civ1,'Grid') |
---|
| 540 | handles.output.ActionInput.Civ1.Grid=regexprep(handles.output.ActionInput.Civ1.Grid,'\','/'); |
---|
| 541 | end |
---|
| 542 | end |
---|
| 543 | if isfield(handles.output.ActionInput,'Civ2') |
---|
| 544 | if isfield(handles.output.ActionInput.Civ2,'Mask') |
---|
| 545 | handles.output.ActionInput.Civ2.Mask=regexprep(handles.output.ActionInput.Civ2.Mask,'\','/'); |
---|
| 546 | end |
---|
| 547 | if isfield(handles.output.ActionInput.Civ2,'Grid') |
---|
| 548 | handles.output.ActionInput.Civ2.Grid=regexprep(handles.output.ActionInput.Civ2.Grid,'\','/'); |
---|
| 549 | end |
---|
| 550 | end |
---|
[597] | 551 | guidata(hObject, handles);% Update handles structure |
---|
[598] | 552 | uiresume(handles.civ_input); |
---|
[597] | 553 | |
---|
| 554 | |
---|
| 555 | %------------------------------------------------------------------------ |
---|
| 556 | % --- Executes on button press in ListCompareMode. |
---|
| 557 | function ListCompareMode_Callback(hObject, eventdata, handles) |
---|
| 558 | %------------------------------------------------------------------------ |
---|
| 559 | ListCompareMode=get(handles.ListCompareMode,'String'); |
---|
| 560 | option=ListCompareMode{get(handles.ListCompareMode,'Value')}; |
---|
[645] | 561 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 562 | SeriesData=get(hseries,'UserData'); |
---|
| 563 | check_nc=strcmp(SeriesData.FileType{1},'.nc'); |
---|
| 564 | ImageType=SeriesData.FileType(2:end); |
---|
| 565 | if check_nc |
---|
| 566 | ImageType=SeriesData.FileType(2:end); |
---|
| 567 | else |
---|
| 568 | ImageType=SeriesData.FileType; |
---|
| 569 | end |
---|
| 570 | hhseries=guidata(hseries); |
---|
| 571 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 572 | OriginIndex='off'; |
---|
| 573 | PairIndices='off'; |
---|
| 574 | DoubleInputSeries='off'; |
---|
[597] | 575 | switch option |
---|
| 576 | case 'PIV' |
---|
[645] | 577 | PairIndices='on';% needs to define index pairs for PIV |
---|
| 578 | |
---|
| 579 | case 'PIV volume' |
---|
| 580 | PairIndices='on';% needs to define index pairs for PIV |
---|
[597] | 581 | set(handles.ListPairMode,'Value',1) |
---|
| 582 | set(handles.ListPairMode,'String',{'series(Di)'}) |
---|
[645] | 583 | ListPairMode_Callback(hObject, eventdata, handles) |
---|
| 584 | case 'displacement' |
---|
| 585 | OriginIndex='on';%define a frame origin for displacement |
---|
[833] | 586 | % case 'shift' |
---|
| 587 | % if numel(ImageType)==1 |
---|
| 588 | % fileinput=uigetfile_uvmat('pick a second file series for synchronous shift',InputTable{check_nc+1}); |
---|
| 589 | % if ~isempty(fileinput) |
---|
| 590 | % series( 'display_file_name',hhseries,fileinput,'append') |
---|
| 591 | % end |
---|
| 592 | % |
---|
| 593 | % |
---|
| 594 | % end |
---|
[597] | 595 | end |
---|
[645] | 596 | set(handles.num_OriginIndex,'Visible',OriginIndex) |
---|
| 597 | set(handles.OriginIndex_title,'Visible',OriginIndex) |
---|
| 598 | set(handles.PairIndices,'Visible',PairIndices) |
---|
[597] | 599 | ListPairMode_Callback(hObject, eventdata, handles) |
---|
[645] | 600 | |
---|
[597] | 601 | |
---|
| 602 | |
---|
| 603 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 604 | % Callbacks in the uipanel Pair Indices |
---|
| 605 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 606 | %------------------------------------------------------------------------ |
---|
| 607 | % --- Executes on button press in ListPairMode. |
---|
| 608 | function ListPairMode_Callback(hObject, eventdata, handles) |
---|
| 609 | %------------------------------------------------------------------------ |
---|
| 610 | compare_list=get(handles.ListCompareMode,'String'); |
---|
| 611 | val=get(handles.ListCompareMode,'Value'); |
---|
| 612 | compare=compare_list{val}; |
---|
| 613 | if strcmp(compare,'displacement')||strcmp(compare,'shift') |
---|
| 614 | mode='displacement'; |
---|
| 615 | else |
---|
| 616 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 617 | if ischar(mode_list) |
---|
| 618 | mode_list={mode_list}; |
---|
| 619 | end |
---|
| 620 | mode_value=get(handles.ListPairMode,'Value'); |
---|
| 621 | mode=mode_list{mode_value}; |
---|
| 622 | end |
---|
[609] | 623 | % displ_num=[];%default |
---|
[597] | 624 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
| 625 | % last_i=str2num(get(handles.last_i,'String')); |
---|
[599] | 626 | CivInputData=get(handles.civ_input,'UserData'); |
---|
[597] | 627 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
| 628 | checkframe=strcmp(TimeUnit,'frame'); |
---|
[599] | 629 | time=CivInputData.Time; |
---|
| 630 | siztime=size(CivInputData.Time); |
---|
[609] | 631 | nbfield=siztime(1)-1; |
---|
| 632 | nbfield2=siztime(2)-1; |
---|
[597] | 633 | indchosen=1; %%first pair selected by default |
---|
| 634 | %displ_num used to define the indices of the civ_input pairs |
---|
| 635 | % in mode 'pair j1-j2', j1 and j2 are the file indices, else the indices |
---|
| 636 | % are relative to the reference indices ref_i and ref_j respectively. |
---|
| 637 | if isequal(mode,'pair j1-j2')%| isequal(mode,'st_pair j1-j2') |
---|
| 638 | dt=1; |
---|
| 639 | displ=''; |
---|
| 640 | index=0; |
---|
| 641 | numlist_a=[]; |
---|
| 642 | numlist_B=[]; |
---|
| 643 | %get all the time intervals in bursts |
---|
| 644 | displ_dt=1;%default |
---|
| 645 | nbfield2=min(nbfield2,10);%limitate the number of pairs to 10x10 |
---|
| 646 | for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'pair j1-j2' mode |
---|
| 647 | for numod_b=(numod_a+1):nbfield2 |
---|
| 648 | index=index+1; |
---|
| 649 | numlist_a(index)=numod_a; |
---|
| 650 | numlist_b(index)=numod_b; |
---|
| 651 | if size(time,2)>1 && ~checkframe |
---|
[599] | 652 | dt(numod_a,numod_b)=CivInputData.Time(ref_i+1,numod_b+1)-CivInputData.Time(ref_i+1,numod_a+1);%first time interval dt |
---|
[597] | 653 | displ_dt(index)=dt(numod_a,numod_b); |
---|
| 654 | else |
---|
| 655 | displ_dt(index)=1; |
---|
| 656 | end |
---|
| 657 | end |
---|
| 658 | end |
---|
| 659 | [dtsort,indsort]=sort(displ_dt); |
---|
| 660 | if ~isempty(numlist_a) |
---|
| 661 | displ_num(1,:)=numlist_a(indsort); |
---|
| 662 | displ_num(2,:)=numlist_b(indsort); |
---|
| 663 | end |
---|
| 664 | displ_num(3,:)=0; |
---|
| 665 | displ_num(4,:)=0; |
---|
| 666 | enable_j(handles, 'off') |
---|
| 667 | elseif isequal(mode,'series(Dj)') %| isequal(mode,'st_series(Dj)') |
---|
| 668 | index=1:200; |
---|
| 669 | displ_num(1,index)=-floor(index/2); |
---|
| 670 | displ_num(2,index)=ceil(index/2); |
---|
| 671 | displ_num(3:4,index)=zeros(2,200); |
---|
| 672 | enable_j(handles, 'on') |
---|
| 673 | elseif isequal(mode,'series(Di)') %| isequal(mode,'st_series(Di)') |
---|
[609] | 674 | % index=1:200; |
---|
| 675 | % displ_num(1:2,index)=zeros(2,200); |
---|
| 676 | % displ_num(3,index)=-floor(index/2); |
---|
| 677 | % displ_num(4,index)=ceil(index/2); |
---|
[597] | 678 | enable_i(handles, 'on') |
---|
| 679 | if nbfield2 > 1 |
---|
| 680 | enable_j(handles, 'on') |
---|
| 681 | else |
---|
| 682 | enable_j(handles, 'off') |
---|
| 683 | end |
---|
| 684 | elseif isequal(mode,'displacement')%the pairs have the same indices |
---|
| 685 | displ_num(1,1)=0; |
---|
| 686 | displ_num(2,1)=0; |
---|
| 687 | displ_num(3,1)=0; |
---|
| 688 | displ_num(4,1)=0; |
---|
| 689 | if nbfield > 1 || nbfield==0 |
---|
| 690 | enable_i(handles, 'on') |
---|
| 691 | else |
---|
| 692 | enable_j(handles, 'off') |
---|
| 693 | end |
---|
| 694 | if nbfield2 > 1 |
---|
| 695 | enable_j(handles, 'on') |
---|
| 696 | else |
---|
| 697 | enable_j(handles, 'off') |
---|
| 698 | end |
---|
| 699 | end |
---|
[609] | 700 | %set(handles.ListPairCiv1,'UserData',displ_num); |
---|
[597] | 701 | errormsg=find_netcpair_civ( handles,1); |
---|
| 702 | if ~isempty(errormsg) |
---|
| 703 | msgbox_uvmat('ERROR',errormsg) |
---|
| 704 | end |
---|
| 705 | % find_netcpair_civ2(handles) |
---|
| 706 | |
---|
| 707 | function enable_i(handles, state) |
---|
| 708 | set(handles.itext,'Visible',state) |
---|
[645] | 709 | % set(handles.MinIndex_i,'Visible',state) |
---|
[603] | 710 | % set(handles.last_i,'Visible',state) |
---|
| 711 | % set(handles.incr_i,'Visible',state) |
---|
[645] | 712 | set(handles.MaxIndex_i,'Visible',state) |
---|
[597] | 713 | set(handles.ref_i,'Visible',state) |
---|
| 714 | |
---|
| 715 | function enable_j(handles, state) |
---|
| 716 | set(handles.jtext,'Visible',state) |
---|
[645] | 717 | % set(handles.MinIndex_j,'Visible',state) |
---|
[603] | 718 | % set(handles.last_j,'Visible',state) |
---|
| 719 | % set(handles.incr_j,'Visible',state) |
---|
[645] | 720 | set(handles.MinIndex_j,'Visible',state) |
---|
| 721 | set(handles.MaxIndex_j,'Visible',state) |
---|
[597] | 722 | set(handles.ref_j,'Visible',state) |
---|
[645] | 723 | %hseries=findobj(allchild(0),'Tag','series'); |
---|
| 724 | %hhseries=guidata(hseries); |
---|
| 725 | %series('enable_j',hhseries,state); %file input with xml reading in uvmat, show the image in phys coordinates |
---|
[597] | 726 | |
---|
| 727 | |
---|
[645] | 728 | |
---|
[597] | 729 | %------------------------------------------------------------------------ |
---|
| 730 | % --- Executes on selection change in ListPairCiv1. |
---|
| 731 | function ListPairCiv1_Callback(hObject, eventdata, handles) |
---|
| 732 | %------------------------------------------------------------------------ |
---|
| 733 | %reproduce by default the chosen pair in the checkciv2 menu |
---|
| 734 | list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs |
---|
[645] | 735 | PairString=list_pair{get(handles.ListPairCiv1,'Value')}; |
---|
[597] | 736 | |
---|
[645] | 737 | [ind1,ind2]=... |
---|
| 738 | find_pair_indices(PairString); |
---|
| 739 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 740 | hhseries=guidata(hseries); |
---|
| 741 | set(hhseries.num_first_j,'String',num2str(ind1)); |
---|
| 742 | set(hhseries.num_last_j,'String',num2str(ind2)); |
---|
| 743 | set(hhseries.num_incr_j,'String',num2str(ind2-ind1)); |
---|
[668] | 744 | set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))%civ2 selection the same as civ& by default |
---|
[645] | 745 | |
---|
| 746 | |
---|
[597] | 747 | %------------------------------------------------------------------------ |
---|
| 748 | % --- Executes on selection change in ListPairCiv2. |
---|
| 749 | function ListPairCiv2_Callback(hObject, eventdata, handles) |
---|
| 750 | %------------------------------------------------------------------------ |
---|
| 751 | |
---|
[851] | 752 | |
---|
[597] | 753 | %------------------------------------------------------------------------ |
---|
| 754 | function ref_i_Callback(hObject, eventdata, handles) |
---|
| 755 | %------------------------------------------------------------------------ |
---|
| 756 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 757 | mode_value=get(handles.ListPairMode,'Value'); |
---|
| 758 | mode=mode_list{mode_value}; |
---|
| 759 | errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files |
---|
| 760 | if isequal(mode,'series(Di)') || ...% we do patch2 only |
---|
| 761 | (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) |
---|
| 762 | errormsg=find_netcpair_civ( handles,2); |
---|
| 763 | end |
---|
[851] | 764 | if isempty(errormsg) |
---|
| 765 | set(handles.ref_i,'BackgroundColor',[1 1 1]) |
---|
| 766 | else |
---|
[597] | 767 | msgbox_uvmat('ERROR',errormsg) |
---|
| 768 | end |
---|
| 769 | |
---|
[851] | 770 | function ref_i_KeyPressFcn(hObject, eventdata, handles) |
---|
| 771 | set(hObject,'BackgroundColor',[1 0 1]) |
---|
| 772 | |
---|
| 773 | % %------------------------------------------------------------------------ |
---|
| 774 | % function ref_j_Callback(hObject, eventdata, handles) |
---|
| 775 | % %------------------------------------------------------------------------ |
---|
| 776 | % mode_list=get(handles.ListPairMode,'String'); |
---|
| 777 | % mode_value=get(handles.ListPairMode,'Value'); |
---|
| 778 | % mode=mode_list{mode_value}; |
---|
| 779 | % errormsg=''; |
---|
| 780 | % if isequal(get(handles.CheckCiv1,'Value'),0)|| isequal(mode,'series(Dj)') |
---|
| 781 | % errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files |
---|
| 782 | % end |
---|
| 783 | % if isequal(mode,'series(Dj)') || ... |
---|
| 784 | % (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) |
---|
| 785 | % errormsg=find_netcpair_civ(handles,2); |
---|
| 786 | % end |
---|
| 787 | % if ~isempty(errormsg) |
---|
| 788 | % msgbox_uvmat('ERROR',errormsg) |
---|
| 789 | % end |
---|
| 790 | % |
---|
| 791 | % function ref_j_KeyPressFcn(hObject, eventdata, handles) |
---|
| 792 | % set(handles.ref_j,'BackgroundColor',[1 0 1]) |
---|
[597] | 793 | %------------------------------------------------------------------------ |
---|
| 794 | % determine the menu for checkciv1 pairs depending on existing netcdf file at the middle of |
---|
[645] | 795 | % the field series set by MinIndex_i, incr, last_i |
---|
[597] | 796 | % index=1: look for pairs for civ1 |
---|
| 797 | % index=2: look for pairs for civ2 |
---|
| 798 | function errormsg=find_netcpair_civ(handles,index) |
---|
| 799 | %------------------------------------------------------------------------ |
---|
| 800 | set(gcf,'Pointer','watch')% set the mouse pointer to 'watch' (clock) |
---|
| 801 | |
---|
| 802 | %% initialisation |
---|
| 803 | errormsg=''; |
---|
[603] | 804 | CivInputData=get(handles.civ_input,'UserData'); |
---|
[599] | 805 | %browse=get(handles.RootPath,'UserData'); |
---|
[597] | 806 | compare_list=get(handles.ListCompareMode,'String'); |
---|
| 807 | val=get(handles.ListCompareMode,'Value'); |
---|
| 808 | compare=compare_list{val}; |
---|
| 809 | if strcmp(compare,'displacement')||strcmp(compare,'shift') |
---|
| 810 | mode='displacement'; |
---|
| 811 | else |
---|
| 812 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 813 | mode_value=get(handles.ListPairMode,'Value'); |
---|
| 814 | if isempty(mode_list) |
---|
| 815 | return |
---|
| 816 | end |
---|
| 817 | mode=mode_list{mode_value}; |
---|
| 818 | end |
---|
[603] | 819 | nom_type_ima=CivInputData.NomTypeIma; |
---|
[597] | 820 | |
---|
| 821 | %% determine nom_type_nc, nomenclature type of the .nc files: |
---|
| 822 | [nom_type_nc]=nomtype2pair(nom_type_ima,mode); |
---|
| 823 | |
---|
| 824 | %% reads .nc subdirectoy and image numbers from the interface |
---|
[637] | 825 | %SubDirImages=get(handles.Civ1_ImageA,'String'); |
---|
[609] | 826 | %TODO: determine |
---|
[637] | 827 | %subdir_civ1=[SubDirImages get(handles.Civ1_ImageB,'String')];%subdirectory subdir_civ1 for the netcdf data |
---|
| 828 | %subdir_civ2=[SubDirImages get(handles.Civ2_ImageA,'String')];%subdirectory subdir_civ2 for the netcdf data |
---|
[597] | 829 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
| 830 | ref_j=[]; |
---|
| 831 | if isequal(mode,'pair j1-j2')%|isequal(mode,'st_pair j1-j2') |
---|
| 832 | ref_j=0; |
---|
| 833 | elseif strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 834 | ref_j=str2double(get(handles.ref_j,'String')); |
---|
| 835 | end |
---|
| 836 | if isempty(ref_j) |
---|
| 837 | ref_j=1; |
---|
| 838 | end |
---|
[609] | 839 | CivInputData=get(handles.civ_input,'UserData'); |
---|
[597] | 840 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
[633] | 841 | Time=CivInputData.Time; |
---|
[597] | 842 | checkframe=strcmp(TimeUnit,'frame'); |
---|
| 843 | |
---|
| 844 | %% case with no Civ1 operation, netcdf files need to exist for reading |
---|
| 845 | displ_pair={''}; |
---|
[609] | 846 | nbpair=200;%default |
---|
[597] | 847 | select=ones(size(1:nbpair));%flag for displayed pairs =1 for display |
---|
[609] | 848 | nbpair=200; %default |
---|
[597] | 849 | |
---|
| 850 | %% determine the menu display in .ListPairCiv1 |
---|
[774] | 851 | switch mode |
---|
| 852 | case 'series(Di)' |
---|
[597] | 853 | for ipair=1:nbpair |
---|
| 854 | if select(ipair) |
---|
| 855 | displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; |
---|
[774] | 856 | if ~checkframe |
---|
| 857 | if size(Time,1)>=ref_i+1+ceil(ipair/2) && size(Time,2)>=ref_j+1&& ref_i-floor(ipair/2)>=0 && ref_j>=0 |
---|
| 858 | dt=Time(ref_i+1+ceil(ipair/2),ref_j+1)-Time(ref_i+1-floor(ipair/2),ref_j+1);%Time interval dtref_j+1 |
---|
| 859 | displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; |
---|
| 860 | end |
---|
[597] | 861 | else |
---|
[635] | 862 | dt=ipair/1000; |
---|
[774] | 863 | displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(ipair)]; |
---|
| 864 | end |
---|
[597] | 865 | else |
---|
| 866 | displ_pair{ipair}='...'; %pair not displayed in the menu |
---|
| 867 | end |
---|
| 868 | end |
---|
[774] | 869 | case 'series(Dj)' |
---|
[597] | 870 | for ipair=1:nbpair |
---|
| 871 | if select(ipair) |
---|
| 872 | displ_pair{ipair}=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; |
---|
[774] | 873 | if ~checkframe |
---|
| 874 | if size(Time,2)>=ref_j+1+ceil(ipair/2) && size(Time,1)>=ref_i+1 && ref_j-floor(ipair/2)>=0 && ref_i>=0 |
---|
| 875 | dt=Time(ref_i+1,ref_j+1+ceil(ipair/2))-Time(ref_i+1,ref_j+1-floor(ipair/2));%Time interval dtref_j+1 |
---|
| 876 | displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; |
---|
| 877 | end |
---|
[635] | 878 | else |
---|
| 879 | dt=ipair/1000; |
---|
[597] | 880 | displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; |
---|
[774] | 881 | end |
---|
[597] | 882 | else |
---|
| 883 | displ_pair{ipair}='...'; %pair not displayed in the menu |
---|
| 884 | end |
---|
| 885 | end |
---|
[774] | 886 | case 'pair j1-j2'%case of pairs |
---|
[776] | 887 | % MinIndex_j=CivInputData.MinIndex_j; |
---|
| 888 | % MaxIndex_j=min(CivInputData.MaxIndex_j,10);%limitate the number of pairs to 10x10 |
---|
| 889 | MinIndex_j=str2num(get(handles.MinIndex_j,'String')); |
---|
| 890 | MaxIndex_j=str2num(get(handles.MaxIndex_j,'String')); |
---|
[774] | 891 | index_pair=0; |
---|
| 892 | %get all the Time intervals in bursts |
---|
| 893 | for numod_a=MinIndex_j:MaxIndex_j-1 %nbfield2 always >=2 for 'pair j1-j2' mode |
---|
| 894 | for numod_b=(numod_a+1):MaxIndex_j |
---|
| 895 | index_pair=index_pair+1; |
---|
| 896 | displ_pair{index_pair}=['j= ' num2stra(numod_a,nom_type_ima) '-' num2stra(numod_b,nom_type_ima)]; |
---|
| 897 | dt(index_pair)=numod_b-numod_a;%default dt |
---|
| 898 | if size(Time,1)>ref_i && size(Time,2)>numod_b % && ~checkframe |
---|
| 899 | dt(index_pair)=Time(ref_i+1,numod_b+1)-Time(ref_i+1,numod_a+1);% Time interval dt |
---|
| 900 | displ_pair{index_pair}=[displ_pair{index_pair} ' :dt= ' num2str(dt(index_pair)*1000)]; |
---|
| 901 | end |
---|
[597] | 902 | end |
---|
[774] | 903 | |
---|
[597] | 904 | end |
---|
[774] | 905 | [tild,indsort]=sort(dt); |
---|
| 906 | displ_pair=displ_pair(indsort); |
---|
| 907 | case 'displacement' |
---|
| 908 | displ_pair={'Di=Dj=0'}; |
---|
[597] | 909 | end |
---|
| 910 | if index==1 |
---|
[774] | 911 | set(handles.ListPairCiv1,'String',displ_pair'); |
---|
[597] | 912 | end |
---|
| 913 | |
---|
[758] | 914 | %% determine the default selection in the pair menu for Civ1 |
---|
[597] | 915 | ichoice=find(select,1);% index of selected pair |
---|
| 916 | if (isempty(ichoice) || ichoice < 1); ichoice=1; end; |
---|
| 917 | initial=get(handles.ListPairCiv1,'Value');%initial choice of pair |
---|
| 918 | if initial>nbpair || (numel(select)>=initial && ~isequal(select(initial),1)) |
---|
| 919 | set(handles.ListPairCiv1,'Value',ichoice);% first valid pair proposed by default in the menu |
---|
| 920 | end |
---|
[758] | 921 | |
---|
| 922 | %% determine the default selection in the pair menu for Civ2 |
---|
| 923 | if strcmp(get(handles.ListPairCiv2,'Visible'),'on') |
---|
| 924 | initial=get(handles.ListPairCiv2,'Value'); |
---|
| 925 | if initial>length(displ_pair')%|~isequal(select(initial),1) |
---|
| 926 | if ichoice <= length(displ_pair') |
---|
| 927 | set(handles.ListPairCiv2,'Value',ichoice);% same pair proposed by default for civ2 |
---|
| 928 | else |
---|
| 929 | set(handles.ListPairCiv2,'Value',1);% same pair proposed by default for civ2 |
---|
| 930 | end |
---|
[597] | 931 | end |
---|
[758] | 932 | else |
---|
| 933 | set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))% initiate the choice of Civ2 as a reproduction of if civ1 |
---|
[597] | 934 | end |
---|
| 935 | set(handles.ListPairCiv2,'String',displ_pair'); |
---|
[758] | 936 | set(gcf,'Pointer','arrow')% Indicate that the process is finished |
---|
[597] | 937 | |
---|
| 938 | |
---|
| 939 | |
---|
| 940 | % %------------------------------------------------------------------------ |
---|
| 941 | % % call 'view_field.fig' to display the field selected in the list of 'status' |
---|
| 942 | % function open_view_field(hObject, eventdata) |
---|
| 943 | % %------------------------------------------------------------------------ |
---|
| 944 | % list=get(hObject,'String'); |
---|
| 945 | % index=get(hObject,'Value'); |
---|
| 946 | % rootroot=get(hObject,'UserData'); |
---|
| 947 | % filename=list{index}; |
---|
| 948 | % ind_dot=strfind(filename,'...'); |
---|
| 949 | % filename=filename(1:ind_dot-1); |
---|
| 950 | % filename=fullfile(rootroot,filename); |
---|
| 951 | % delete(get(hObject,'parent'))%delete the display figure to stop the check process |
---|
| 952 | % if exist(filename,'file')%visualise the vel field if it exists |
---|
| 953 | % uvmat(filename) |
---|
| 954 | % set(gcbo,'Value',1) |
---|
| 955 | % end |
---|
| 956 | |
---|
| 957 | |
---|
| 958 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 959 | % Callbacks in the uipanel Reference Indices |
---|
| 960 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 961 | %------------------------------------------------------------------------ |
---|
[645] | 962 | function MinIndex_i_Callback(hObject, eventdata, handles) |
---|
[597] | 963 | %------------------------------------------------------------------------ |
---|
[645] | 964 | first_i=str2double(get(handles.MinIndex_i,'String')); |
---|
[597] | 965 | set(handles.ref_i,'String', num2str(first_i))% reference index for pair dt = first index |
---|
| 966 | ref_i_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) |
---|
| 967 | |
---|
[776] | 968 | % %------------------------------------------------------------------------ |
---|
| 969 | % function MinIndex_j_Callback(hObject, eventdata, handles) |
---|
| 970 | % %------------------------------------------------------------------------ |
---|
| 971 | % first_j=str2num(get(handles.MinIndex_j,'String')); |
---|
| 972 | % set(handles.ref_j,'String', num2str(first_j))% reference index for pair dt = first index |
---|
| 973 | % ref_j_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) |
---|
[597] | 974 | |
---|
| 975 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 976 | % Callbacks in the uipanel Civ1 |
---|
| 977 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 978 | %------------------------------------------------------------------------ |
---|
| 979 | % --- Executes on button press in SearchRange: determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 |
---|
| 980 | function SearchRange_Callback(hObject, eventdata, handles) |
---|
| 981 | %------------------------------------------------------------------------ |
---|
| 982 | %determine pair numbers |
---|
| 983 | if strcmp(get(handles.num_UMin,'Visible'),'off') |
---|
| 984 | set(handles.u_title,'Visible','on') |
---|
| 985 | set(handles.v_title,'Visible','on') |
---|
| 986 | set(handles.num_UMin,'Visible','on') |
---|
| 987 | set(handles.num_UMax,'Visible','on') |
---|
| 988 | set(handles.num_VMin,'Visible','on') |
---|
| 989 | set(handles.num_VMax,'Visible','on') |
---|
| 990 | set(handles.CoordUnit,'Visible','on') |
---|
| 991 | set(handles.TimeUnit,'Visible','on') |
---|
| 992 | set(handles.slash_title,'Visible','on') |
---|
| 993 | set(handles.min_title,'Visible','on') |
---|
| 994 | set(handles.max_title,'Visible','on') |
---|
| 995 | set(handles.unit_title,'Visible','on') |
---|
| 996 | else |
---|
| 997 | get_search_range(hObject, eventdata, handles) |
---|
| 998 | end |
---|
| 999 | |
---|
| 1000 | %------------------------------------------------------------------------ |
---|
| 1001 | % --- determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 and shift |
---|
| 1002 | function get_search_range(hObject, eventdata, handles) |
---|
| 1003 | %------------------------------------------------------------------------ |
---|
| 1004 | param_civ1=read_GUI(handles.Civ1); |
---|
| 1005 | umin=param_civ1.UMin; |
---|
| 1006 | umax=param_civ1.UMax; |
---|
| 1007 | vmin=param_civ1.VMin; |
---|
| 1008 | vmax=param_civ1.VMax; |
---|
| 1009 | %switch min_title and max_title in case of error |
---|
| 1010 | if umax<=umin |
---|
| 1011 | umin_old=umin; |
---|
| 1012 | umin=umax; |
---|
| 1013 | umax=umin_old; |
---|
| 1014 | set(handles.num_UMin,'String', num2str(umin)) |
---|
| 1015 | set(handles.num_UMax,'String', num2str(umax)) |
---|
| 1016 | end |
---|
| 1017 | if vmax<=vmin |
---|
| 1018 | vmin_old=vmin; |
---|
| 1019 | vmin=vmax; |
---|
| 1020 | vmax=vmin_old; |
---|
| 1021 | set(handles.num_VMin,'String', num2str(vmin)) |
---|
| 1022 | set(handles.num_VMax,'String', num2str(vmax)) |
---|
| 1023 | end |
---|
| 1024 | if ~(isempty(umin)||isempty(umax)||isempty(vmin)||isempty(vmax)) |
---|
| 1025 | list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs |
---|
| 1026 | index=get(handles.ListPairCiv1,'Value'); |
---|
| 1027 | pair_string=list_pair{index}; |
---|
[851] | 1028 | time=get(handles.TimeSource,'UserData'); %get the set of times |
---|
[597] | 1029 | pxcm=get(handles.SearchRange,'UserData'); |
---|
| 1030 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 1031 | mode_value=get(handles.ListPairMode,'Value'); |
---|
| 1032 | mode=mode_list{mode_value}; |
---|
| 1033 | if isequal (mode, 'series(Di)' ) |
---|
| 1034 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
| 1035 | num1=ref_i-floor(index/2);% first image numbers |
---|
| 1036 | num2=ref_i+ceil(index/2); |
---|
| 1037 | num_a=1; |
---|
| 1038 | num_b=1; |
---|
| 1039 | elseif isequal (mode, 'series(Dj)') |
---|
| 1040 | num1=1; |
---|
| 1041 | num2=1; |
---|
| 1042 | ref_j=str2double(get(handles.ref_j,'String')); |
---|
| 1043 | num_a=ref_j-floor(index/2);% first image numbers |
---|
| 1044 | num_b=ref_j+ceil(index/2); |
---|
| 1045 | elseif isequal(mode,'pair j1-j2') %case of bursts (png_old or png_2D) |
---|
| 1046 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
| 1047 | num1=ref_i; |
---|
| 1048 | num2=ref_i; |
---|
| 1049 | r=regexp(pair_string,'(?<mode>(Di=)|(Dj=)) -*(?<num1>\d+)\|(?<num2>\d+)','names'); |
---|
| 1050 | if isempty(r) |
---|
| 1051 | r=regexp(pair_string,'(?<num1>\d+)(?<mode>-)(?<num2>\d+)','names'); |
---|
| 1052 | end |
---|
| 1053 | num_a=str2num(r.num1); |
---|
| 1054 | num_b=str2num(r.num2); |
---|
| 1055 | end |
---|
| 1056 | dt=time(num2+1,num_b+1)-time(num1+1,num_a+1); |
---|
| 1057 | ibx=str2double(get(handles.num_CorrBoxSize_1,'String')); |
---|
| 1058 | iby=str2double(get(handles.num_CorrBoxSize_2,'String')); |
---|
| 1059 | umin=dt*pxcm*umin; |
---|
| 1060 | umax=dt*pxcm*umax; |
---|
| 1061 | vmin=dt*pxcm*vmin; |
---|
| 1062 | vmax=dt*pxcm*vmax; |
---|
| 1063 | shiftx=round((umin+umax)/2); |
---|
| 1064 | shifty=round((vmin+vmax)/2); |
---|
| 1065 | isx=(umax+2-shiftx)*2+param_civ1.Bx; |
---|
| 1066 | isx=2*ceil(isx/2)+1; |
---|
| 1067 | isy=(vmax+2-shifty)*2+param_civ1.Bx; |
---|
| 1068 | isy=2*ceil(isy/2)+1; |
---|
| 1069 | set(handles.num_SearchBoxShift_1,'String',num2str(shiftx)); |
---|
| 1070 | set(handles.num_SearchBoxShift_2,'String',num2str(shifty)); |
---|
| 1071 | set(handles.num_SearchBoxSize_1,'String',num2str(isx)); |
---|
| 1072 | set(handles.num_SearchBoxSize_2,'String',num2str(isy)); |
---|
| 1073 | end |
---|
| 1074 | |
---|
[851] | 1075 | %------------------------------------------------------------------------ |
---|
| 1076 | % --- Executes on button press in CheckMask. |
---|
| 1077 | function num_CorrSmooth_Callback(hObject, eventdata, handles) |
---|
| 1078 | set(hObject,'BackgroundColor',[1 0 1]) |
---|
| 1079 | set(handles.configSource,'String','NEW') |
---|
| 1080 | |
---|
| 1081 | %------------------------------------------------------------------------ |
---|
| 1082 | |
---|
[597] | 1083 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1084 | % Callbacks in the uipanel Fix1 |
---|
| 1085 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1086 | %------------------------------------------------------------------------ |
---|
[851] | 1087 | % % --- Executes on button press in CheckMask. |
---|
| 1088 | % function get_mask_fix1_Callback(hObject, eventdata, handles) |
---|
| 1089 | % %------------------------------------------------------------------------ |
---|
| 1090 | % maskval=get(handles.CheckMask,'Value'); |
---|
| 1091 | % if isequal(maskval,0) |
---|
| 1092 | % set(handles.Mask,'String','') |
---|
| 1093 | % else |
---|
| 1094 | % mask_displ='no mask'; %default |
---|
| 1095 | % filebase=get(handles.RootPath,'String'); |
---|
| 1096 | % [nbslice, flag_mask]=get_mask(filebase,handles); |
---|
| 1097 | % if isequal(flag_mask,1) |
---|
| 1098 | % mask_displ=[num2str(nbslice) 'mask']; |
---|
| 1099 | % elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series |
---|
| 1100 | % filebase_a=get(handles.RootFile_1,'String'); |
---|
| 1101 | % [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); |
---|
| 1102 | % if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) |
---|
| 1103 | % mask_displ='no mask'; |
---|
| 1104 | % end |
---|
| 1105 | % end |
---|
| 1106 | % if isequal(mask_displ,'no mask') |
---|
| 1107 | % [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1108 | % {'*.png', ' (*.png)'; |
---|
| 1109 | % '*.png', '.png files '; ... |
---|
| 1110 | % '*.*', 'All Files (*.*)'}, ... |
---|
| 1111 | % 'Pick a mask file *.png',filebase); |
---|
| 1112 | % mask_displ=fullfile(PathName,FileName); |
---|
| 1113 | % if ~exist(mask_displ,'file') |
---|
| 1114 | % mask_displ='no mask'; |
---|
| 1115 | % end |
---|
| 1116 | % end |
---|
| 1117 | % if isequal(mask_displ,'no mask') |
---|
| 1118 | % set(handles.CheckMask,'Value',0) |
---|
| 1119 | % set(handles.CheckMask,'Value',0) |
---|
| 1120 | % set(handles.CheckMask,'Value',0) |
---|
| 1121 | % else |
---|
| 1122 | % %set(handles.CheckMask,'Value',1) |
---|
| 1123 | % set(handles.CheckMask,'Value',1) |
---|
| 1124 | % end |
---|
| 1125 | % set(handles.Mask,'String',mask_displ) |
---|
| 1126 | % set(handles.Mask,'String',mask_displ) |
---|
| 1127 | % set(handles.Mask,'String',mask_displ) |
---|
| 1128 | % end |
---|
[597] | 1129 | |
---|
[851] | 1130 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1131 | % Callbacks in the uipanel Civ2 |
---|
| 1132 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
[597] | 1133 | %------------------------------------------------------------------------ |
---|
| 1134 | % --- Executes on button press in CheckMask: select box for mask option |
---|
| 1135 | function get_mask_civ2_Callback(hObject, eventdata, handles) |
---|
| 1136 | %------------------------------------------------------------------------ |
---|
| 1137 | maskval=get(handles.CheckMask,'Value'); |
---|
| 1138 | if isequal(maskval,0) |
---|
| 1139 | set(handles.Mask,'String','') |
---|
| 1140 | else |
---|
| 1141 | mask_displ='no mask'; %default |
---|
| 1142 | filebase=get(handles.RootPath,'String'); |
---|
| 1143 | [nbslice, flag_mask]=get_mask(filebase,handles); |
---|
| 1144 | if isequal(flag_mask,1) |
---|
| 1145 | mask_displ=[num2str(nbslice) 'mask']; |
---|
| 1146 | elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series |
---|
| 1147 | filebase_a=get(handles.RootFile_1,'String'); |
---|
| 1148 | [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); |
---|
| 1149 | if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) |
---|
| 1150 | mask_displ='no mask'; |
---|
| 1151 | end |
---|
| 1152 | end |
---|
| 1153 | if isequal(mask_displ,'no mask') |
---|
| 1154 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1155 | {'*.png', ' (*.png)'; |
---|
| 1156 | '*.png', '.png files '; ... |
---|
| 1157 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1158 | 'Pick a mask file *.png',filebase); |
---|
| 1159 | mask_displ=fullfile(PathName,FileName); |
---|
| 1160 | if ~exist(mask_displ,'file') |
---|
| 1161 | mask_displ='no mask'; |
---|
| 1162 | end |
---|
| 1163 | end |
---|
| 1164 | if isequal(mask_displ,'no mask') |
---|
| 1165 | set(handles.CheckMask,'Value',0) |
---|
| 1166 | set(handles.CheckMask,'Value',0) |
---|
| 1167 | else |
---|
| 1168 | set(handles.CheckMask,'Value',1) |
---|
| 1169 | end |
---|
| 1170 | set(handles.Mask,'String',mask_displ) |
---|
| 1171 | end |
---|
| 1172 | |
---|
[851] | 1173 | % %------------------------------------------------------------------------ |
---|
| 1174 | % % --- Executes on button press in CheckMask. |
---|
| 1175 | % function get_mask_fix2_Callback(hObject, eventdata, handles) |
---|
| 1176 | % %------------------------------------------------------------------------ |
---|
| 1177 | % maskval=get(handles.CheckMask,'Value'); |
---|
| 1178 | % if isequal(maskval,0) |
---|
| 1179 | % set(handles.Mask,'String','') |
---|
| 1180 | % else |
---|
| 1181 | % mask_displ='no mask'; %default |
---|
| 1182 | % filebase=get(handles.RootPath,'String'); |
---|
| 1183 | % [nbslice, flag_mask]=get_mask(filebase,handles); |
---|
| 1184 | % if isequal(flag_mask,1) |
---|
| 1185 | % mask_displ=[num2str(nbslice) 'mask']; |
---|
| 1186 | % elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series |
---|
| 1187 | % filebase_a=get(handles.RootFile_1,'String'); |
---|
| 1188 | % [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); |
---|
| 1189 | % if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) |
---|
| 1190 | % mask_displ='no mask'; |
---|
| 1191 | % end |
---|
| 1192 | % end |
---|
| 1193 | % if isequal(mask_displ,'no mask') |
---|
| 1194 | % [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1195 | % {'*.png', ' (*.png)'; |
---|
| 1196 | % '*.png', '.png files '; ... |
---|
| 1197 | % '*.*', 'All Files (*.*)'}, ... |
---|
| 1198 | % 'Pick a mask file *.png',filebase); |
---|
| 1199 | % mask_displ=fullfile(PathName,FileName); |
---|
| 1200 | % if ~exist(mask_displ,'file') |
---|
| 1201 | % mask_displ='no mask'; |
---|
| 1202 | % end |
---|
| 1203 | % end |
---|
| 1204 | % if isequal(mask_displ,'no mask') |
---|
| 1205 | % set(handles.CheckMask,'Value',0) |
---|
| 1206 | % end |
---|
| 1207 | % set(handles.Mask,'String',mask_displ) |
---|
| 1208 | % end |
---|
[597] | 1209 | |
---|
| 1210 | %------------------------------------------------------------------------ |
---|
| 1211 | % --- function called to look for mask files |
---|
| 1212 | function [nbslice, flag_mask]=get_mask(filebase,handles) |
---|
| 1213 | %------------------------------------------------------------------------ |
---|
| 1214 | %detect mask files, images with appropriate file base |
---|
| 1215 | %[filebase '_' xx 'mask'], xx=nbslice |
---|
| 1216 | %flag_mask=1 indicates detection |
---|
| 1217 | |
---|
| 1218 | flag_mask=0;%default |
---|
| 1219 | nbslice=1; |
---|
| 1220 | |
---|
[604] | 1221 | % subdir=get(handles.Civ1_ImageB,'String'); |
---|
[597] | 1222 | [Path,Name]=fileparts(filebase); |
---|
| 1223 | if ~isdir(Path) |
---|
| 1224 | msgbox_uvmat('ERROR','no path for input files') |
---|
| 1225 | return |
---|
| 1226 | end |
---|
| 1227 | % currentdir=pwd; |
---|
| 1228 | % cd(Path);%move in the dir of the root name filebase |
---|
| 1229 | maskfiles=dir(fullfile(Path,[Name '_*mask_*.png']));%look for mask files |
---|
| 1230 | % cd(currentdir);%come back to the current working directory |
---|
| 1231 | if ~isempty(maskfiles) |
---|
| 1232 | % msgbox_uvmat('ERROR','no mask available, to create it use Tools/Make mask in the upper menu bar of uvmat') |
---|
| 1233 | % else |
---|
| 1234 | flag_mask=1; |
---|
| 1235 | maskname=maskfiles(1).name;% take the first mask file in the list |
---|
| 1236 | [Path2,Name,ext]=fileparts(maskname); |
---|
| 1237 | Namedouble=double(Name); |
---|
| 1238 | val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters |
---|
| 1239 | ind_mask=findstr('mask',Name); |
---|
| 1240 | i=ind_mask-1; |
---|
| 1241 | while val(i)==0 && i>0 |
---|
| 1242 | i=i-1; |
---|
| 1243 | end |
---|
| 1244 | nbslice=str2double(Name(i+1:ind_mask-1)); |
---|
| 1245 | if ~isnan(nbslice) && Name(i)=='_' |
---|
| 1246 | flag_mask=1; |
---|
| 1247 | else |
---|
| 1248 | msgbox_uvmat('ERROR',['bad mask file ' Name ext ' found in ' Path2]) |
---|
| 1249 | return |
---|
| 1250 | nbslice=1; |
---|
| 1251 | end |
---|
| 1252 | end |
---|
| 1253 | |
---|
| 1254 | %------------------------------------------------------------------------ |
---|
| 1255 | % --- function called to look for grid files |
---|
| 1256 | function [nbslice, flag_grid]=get_grid(filebase,handles) |
---|
| 1257 | %------------------------------------------------------------------------ |
---|
| 1258 | flag_grid=0;%default |
---|
| 1259 | nbslice=1; |
---|
| 1260 | [Path,Name]=fileparts(filebase); |
---|
| 1261 | currentdir=pwd; |
---|
| 1262 | cd(Path);%move in the dir of the root name filebase |
---|
| 1263 | gridfiles=dir([Name '_*grid_*.grid']);%look for grid files |
---|
| 1264 | cd(currentdir);%come back to the current working directory |
---|
| 1265 | if ~isempty(gridfiles) |
---|
| 1266 | flag_grid=1; |
---|
| 1267 | gridname=gridfiles(1).name;% take the first grid file in the list |
---|
| 1268 | [Path2,Name,ext]=fileparts(gridname); |
---|
| 1269 | Namedouble=double(Name); |
---|
| 1270 | val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters |
---|
| 1271 | ind_grid=findstr('grid',Name); |
---|
| 1272 | i=ind_grid-1; |
---|
| 1273 | while val(i)==0 && i>0 |
---|
| 1274 | i=i-1; |
---|
| 1275 | end |
---|
| 1276 | nbslice=str2double(Name(i+1:ind_grid-1)); |
---|
| 1277 | if ~isnan(nbslice) && Name(i)=='_' |
---|
| 1278 | flag_grid=1; |
---|
| 1279 | else |
---|
| 1280 | msgbox_uvmat('ERROR',['bad grid file ' Name ext ' found in ' Path2]) |
---|
| 1281 | return |
---|
| 1282 | nbslice=1; |
---|
| 1283 | end |
---|
| 1284 | end |
---|
| 1285 | |
---|
| 1286 | %------------------------------------------------------------------------ |
---|
| 1287 | % --- transform numbers to letters |
---|
| 1288 | function str=num2stra(num,nom_type) |
---|
| 1289 | %------------------------------------------------------------------------ |
---|
| 1290 | if isempty(nom_type) |
---|
| 1291 | str=''; |
---|
| 1292 | elseif strcmp(nom_type(end),'a') |
---|
| 1293 | str=char(96+num); |
---|
| 1294 | elseif strcmp(nom_type(end),'A') |
---|
| 1295 | str=char(96+num); |
---|
| 1296 | elseif isempty(nom_type(2:end))%a single index |
---|
| 1297 | str=''; |
---|
| 1298 | else |
---|
| 1299 | str=num2str(num); |
---|
| 1300 | end |
---|
| 1301 | |
---|
| 1302 | % %------------------------------------------------------------------------ |
---|
| 1303 | % % --- Executes on button press in ListSubdirCiv1. |
---|
| 1304 | % function ListSubdirCiv1_Callback(hObject, eventdata, handles) |
---|
| 1305 | % %------------------------------------------------------------------------ |
---|
| 1306 | % list_subdir_civ1=get(handles.ListSubdirCiv1,'String'); |
---|
| 1307 | % val=get(handles.ListSubdirCiv1,'Value'); |
---|
| 1308 | % SubDir=list_subdir_civ1{val}; |
---|
| 1309 | % if strcmp(SubDir,'new...') |
---|
| 1310 | % if get(handles.CheckCiv1,'Value') |
---|
| 1311 | % SubDir='CIV_INPUT'; %default subdirectory |
---|
| 1312 | % else |
---|
| 1313 | % msgbox_uvmat('ERROR','select CheckCiv1 to perform a new civ_input operation') |
---|
| 1314 | % return |
---|
| 1315 | % end |
---|
| 1316 | % end |
---|
[604] | 1317 | % set(handles.Civ1_ImageB,'String',SubDir); |
---|
[597] | 1318 | % errormsg=find_netcpair_civ(handles,1); |
---|
| 1319 | % if ~isempty(errormsg) |
---|
| 1320 | % msgbox_uvmat('ERROR',errormsg) |
---|
| 1321 | % end |
---|
| 1322 | % |
---|
| 1323 | %------------------------------------------------------------------------ |
---|
| 1324 | % % --- Executes on button press in ListSubdirCiv2. |
---|
| 1325 | % function ListSubdirCiv2_Callback(hObject, eventdata, handles) |
---|
| 1326 | % %------------------------------------------------------------------------ |
---|
| 1327 | % list_subdir_civ2=get(handles.ListSubdirCiv2,'String'); |
---|
| 1328 | % val=get(handles.ListSubdirCiv2,'Value'); |
---|
| 1329 | % SubDir=list_subdir_civ2{val}; |
---|
| 1330 | % if strcmp(SubDir,'new...') |
---|
| 1331 | % if get(handles.CheckCiv2,'Value') |
---|
| 1332 | % SubDir='CIV_INPUT'; %default subdirectory |
---|
| 1333 | % else |
---|
| 1334 | % msgbox_uvmat('ERROR','select CheckCiv2 to perform a new civ_input operation') |
---|
| 1335 | % return |
---|
| 1336 | % end |
---|
| 1337 | % end |
---|
[604] | 1338 | % set(handles.Civ2_ImageA,'String',SubDir); |
---|
[597] | 1339 | |
---|
| 1340 | %------------------------------------------------------------------------ |
---|
| 1341 | % --- Executes on button press in CheckGrid. |
---|
| 1342 | function CheckGrid_Callback(hObject, eventdata, handles) |
---|
| 1343 | %------------------------------------------------------------------------ |
---|
| 1344 | value=get(hObject,'Value'); |
---|
| 1345 | hparent=get(hObject,'parent');%handles of the parent panel |
---|
| 1346 | hchildren=get(hparent,'children'); |
---|
| 1347 | handle_txtbox=findobj(hchildren,'tag','Grid');% look for the grid name box in the same panel |
---|
| 1348 | handle_dx=findobj(hchildren,'tag','num_Dx'); |
---|
| 1349 | handle_dy=findobj(hchildren,'tag','num_Dy'); |
---|
| 1350 | handle_title_dx=findobj(hchildren,'tag','title_Dx'); |
---|
| 1351 | handle_title_dy=findobj(hchildren,'tag','title_Dy'); |
---|
| 1352 | testgrid=0; |
---|
| 1353 | filegrid=''; |
---|
| 1354 | if value |
---|
[665] | 1355 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1356 | hhseries=guidata(hseries); |
---|
| 1357 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 1358 | ind_A=1;% line index of the (first) image series |
---|
| 1359 | if strcmp(InputTable{1,5},'.nc'); |
---|
| 1360 | ind_A=2; |
---|
| 1361 | end |
---|
| 1362 | filebase=InputTable{ind_A,1}; |
---|
[597] | 1363 | [nbslice, flag_grid]=get_grid(filebase,handles);% look for a grid with appropriate name |
---|
| 1364 | if isequal(flag_grid,1) |
---|
| 1365 | filegrid=[num2str(nbslice) 'grid']; |
---|
| 1366 | testgrid=1; |
---|
| 1367 | else % browse for a grid |
---|
| 1368 | filegrid=get(hObject,'UserData');%look for previous grid name stored as UserData |
---|
| 1369 | if exist(filegrid,'file') |
---|
| 1370 | filebase=filegrid; |
---|
| 1371 | end |
---|
[665] | 1372 | filegrid = uigetfile_uvmat('pick a grid file .grid:',filebase,'.grid'); |
---|
[597] | 1373 | set(hObject,'UserData',filegrid);%store for future use |
---|
[665] | 1374 | if ~isempty(filegrid) |
---|
[597] | 1375 | testgrid=1; |
---|
[665] | 1376 | end |
---|
| 1377 | set(hObject,'UserData',filegrid);%store for future use |
---|
[597] | 1378 | end |
---|
| 1379 | end |
---|
| 1380 | if testgrid |
---|
| 1381 | set(handle_dx,'Visible','off'); |
---|
| 1382 | set(handle_dy,'Visible','off'); |
---|
| 1383 | set(handle_title_dy,'Visible','off'); |
---|
| 1384 | set(handle_title_dx,'Visible','off'); |
---|
| 1385 | set(handle_txtbox,'Visible','on') |
---|
| 1386 | set(handle_txtbox,'String',filegrid) |
---|
| 1387 | else |
---|
| 1388 | set(hObject,'Value',0); |
---|
| 1389 | set(handle_dx,'Visible','on'); |
---|
| 1390 | set(handle_dy,'Visible','on'); |
---|
| 1391 | set(handle_title_dy,'Visible','on'); |
---|
| 1392 | set(handle_title_dx,'Visible','on'); |
---|
| 1393 | set(handle_txtbox,'Visible','off') |
---|
| 1394 | end |
---|
| 1395 | |
---|
| 1396 | %% if hObject is on the checkciv1 frame, duplicate action for checkciv2 frame |
---|
| 1397 | PanelName=get(hparent,'tag'); |
---|
| 1398 | if strcmp(PanelName,'Civ1') |
---|
| 1399 | hchildren=get(handles.Civ2,'children'); |
---|
| 1400 | handle_checkbox=findobj(hchildren,'tag','CheckGrid'); |
---|
| 1401 | handle_txtbox=findobj(hchildren,'tag','Grid'); |
---|
| 1402 | handle_dx=findobj(hchildren,'tag','num_Dx'); |
---|
| 1403 | handle_dy=findobj(hchildren,'tag','num_Dy'); |
---|
| 1404 | handle_title_dx=findobj(hchildren,'tag','title_Dx'); |
---|
| 1405 | handle_title_dy=findobj(hchildren,'tag','title_Dy'); |
---|
| 1406 | set(handle_checkbox,'UserData',filegrid);%store for future use |
---|
| 1407 | if testgrid |
---|
| 1408 | set(handle_checkbox,'Value',1); |
---|
| 1409 | set(handle_dx,'Visible','off'); |
---|
| 1410 | set(handle_dy,'Visible','off'); |
---|
| 1411 | set(handle_title_dx,'Visible','off'); |
---|
| 1412 | set(handle_title_dy,'Visible','off'); |
---|
| 1413 | set(handle_txtbox,'Visible','on') |
---|
| 1414 | set(handle_txtbox,'String',filegrid) |
---|
| 1415 | end |
---|
| 1416 | end |
---|
[851] | 1417 | set(hObject,'BackgroundColor',[1 0 1]) |
---|
| 1418 | set(handles.configSource,'String','NEW') |
---|
[597] | 1419 | |
---|
| 1420 | %------------------------------------------------------------------------ |
---|
| 1421 | % --- Executes on button press in CheckMask: common to all panels (civ1, Civ2..) |
---|
| 1422 | function CheckMask_Callback(hObject, eventdata, handles) |
---|
| 1423 | %------------------------------------------------------------------------ |
---|
| 1424 | value=get(hObject,'Value'); |
---|
| 1425 | hparent=get(hObject,'parent'); |
---|
| 1426 | parent_tag=get(hparent,'Tag'); |
---|
| 1427 | hchildren=get(hparent,'children'); |
---|
| 1428 | handle_txtbox=findobj(hchildren,'tag','Mask');% look for the mask name box in the same panel |
---|
[665] | 1429 | |
---|
[597] | 1430 | testmask=0; |
---|
| 1431 | if value |
---|
[665] | 1432 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1433 | hhseries=guidata(hseries); |
---|
| 1434 | InputTable=get(hhseries.InputTable,'Data'); |
---|
[851] | 1435 | ind_A=1;% line index of the (first) image series |
---|
[665] | 1436 | if strcmp(InputTable{1,5},'.nc'); |
---|
| 1437 | ind_A=2; |
---|
| 1438 | end |
---|
[851] | 1439 | [nbslice, flag_mask]=get_mask(InputTable{ind_A,1},handles);% look for a mask with appropriate name |
---|
[597] | 1440 | if isequal(flag_mask,1) |
---|
| 1441 | filemask=[num2str(nbslice) 'mask']; |
---|
| 1442 | testmask=1; |
---|
[851] | 1443 | else % browse for a mask |
---|
| 1444 | % filemask=get(hObject,'UserData');%look for previous mask name stored as UserData |
---|
| 1445 | % if exist(filemask,'file') |
---|
| 1446 | % filebase=filemask; |
---|
| 1447 | % end |
---|
| 1448 | filemask= uigetfile_uvmat('pick a mask image file:',InputTable{ind_A,1},'image'); |
---|
[597] | 1449 | set(hObject,'UserData',filemask);%store for future use |
---|
[665] | 1450 | if ~isempty(filemask) |
---|
[597] | 1451 | testmask=1; |
---|
| 1452 | end |
---|
| 1453 | end |
---|
| 1454 | end |
---|
| 1455 | if testmask |
---|
[851] | 1456 | set(handles.Mask,'Visible','on') |
---|
| 1457 | set(handles.Mask,'String',filemask) |
---|
[597] | 1458 | set(handles.CheckMask,'Value',1) |
---|
| 1459 | else |
---|
| 1460 | set(hObject,'Value',0); |
---|
| 1461 | set(handle_txtbox,'Visible','off') |
---|
| 1462 | end |
---|
[851] | 1463 | set(hObject,'BackgroundColor',[1 0 1]) |
---|
| 1464 | set(handles.configSource,'String','NEW') |
---|
[597] | 1465 | |
---|
[851] | 1466 | % %------------------------------------------------------------------------ |
---|
| 1467 | % % --- Executes on button press in get_gridpatch1. |
---|
| 1468 | % function get_gridpatch1_Callback(hObject, eventdata, handles) |
---|
| 1469 | % %------------------------------------------------------------------------ |
---|
| 1470 | % filebase=get(handles.RootPath,'String'); |
---|
| 1471 | % [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1472 | % {'*.grid', ' (*.grid)'; |
---|
| 1473 | % '*.grid', '.grid files '; ... |
---|
| 1474 | % '*.*', 'All Files (*.*)'}, ... |
---|
| 1475 | % 'Pick a file',filebase); |
---|
| 1476 | % filegrid=fullfile(PathName,FileName); |
---|
| 1477 | % set(handles.grid_patch1,'string',filegrid); |
---|
| 1478 | % set(hObject,'BackgroundColor',[1 0 1]) |
---|
[597] | 1479 | |
---|
| 1480 | %------------------------------------------------------------------------ |
---|
| 1481 | % --- STEREO Interp |
---|
| 1482 | function cmd=RUN_STINTERP(stinterpBin,filename_A_nc,filename_B_nc,filename_nc,nx_patch,ny_patch,rho_patch,subdomain_patch,thresh_value,xmlA,xmlB) |
---|
| 1483 | %------------------------------------------------------------------------ |
---|
| 1484 | namelog=[filename_nc(1:end-3) '_stinterp.log']; |
---|
| 1485 | cmd=[stinterpBin ' -f1 ' filename_A_nc ' -f2 ' filename_B_nc ' -f ' filename_nc ... |
---|
| 1486 | ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ' -nopt ' subdomain_patch ' -c1 ' xmlA ' -c2 ' xmlB ' -xy x -Nfy 1024 > ' namelog ' 2>&1']; % redirect standard output to the log file |
---|
| 1487 | |
---|
| 1488 | % %------------------------------------------------------------------------ |
---|
| 1489 | % %--read images and convert them to the uint16 format used for PIV |
---|
| 1490 | % function A=read_image(filename,type_ima,num,movieobject) |
---|
| 1491 | % %------------------------------------------------------------------------ |
---|
| 1492 | % %num is the view number needed for an avi movie |
---|
| 1493 | % switch type_ima |
---|
| 1494 | % case 'movie' |
---|
| 1495 | % A=read(movieobject,num); |
---|
| 1496 | % case 'avi' |
---|
| 1497 | % mov=aviread(filename,num); |
---|
| 1498 | % A=frame2im(mov(1)); |
---|
| 1499 | % case 'multimage' |
---|
| 1500 | % A=imread(filename,num); |
---|
| 1501 | % case 'image' |
---|
| 1502 | % A=imread(filename); |
---|
| 1503 | % end |
---|
| 1504 | % siz=size(A); |
---|
| 1505 | % if length(siz)==3;%color images |
---|
| 1506 | % A=sum(double(A),3); |
---|
| 1507 | % A=uint16(A); |
---|
| 1508 | % end |
---|
| 1509 | |
---|
| 1510 | |
---|
| 1511 | %------------------------------------------------------------------------ |
---|
| 1512 | % --- Executes on button press in get_ref_fix1. |
---|
| 1513 | function get_ref_fix1_Callback(hObject, eventdata, handles) |
---|
| 1514 | %------------------------------------------------------------------------ |
---|
| 1515 | filebase=get(handles.RootPath,'String'); |
---|
| 1516 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1517 | {'*.nc', ' (*.nc)'; |
---|
| 1518 | '*.nc', 'netcdf files '; ... |
---|
| 1519 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1520 | 'Pick a file',filebase); |
---|
| 1521 | |
---|
| 1522 | fileinput=[PathName FileName]; |
---|
| 1523 | sizf=size(fileinput); |
---|
| 1524 | if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string |
---|
| 1525 | %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); |
---|
| 1526 | [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); |
---|
| 1527 | ref.filebase=fullfile(Path,File); |
---|
| 1528 | % ref.num_a=stra2num(str_a); |
---|
| 1529 | % ref.num_b=stra2num(str_b); |
---|
| 1530 | % ref.num1=str2double(field_count); |
---|
| 1531 | % ref.num2=str2double(str2); |
---|
| 1532 | browse=[];%initialisation |
---|
| 1533 | if ~isequal(ref.ext,'.nc') |
---|
| 1534 | msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') |
---|
| 1535 | return |
---|
| 1536 | end |
---|
| 1537 | set(handles.ref_fix1,'String',[fullfile(ref.subdir,File) '....nc']); |
---|
| 1538 | set(handles.ref_fix1,'UserData',ref) |
---|
| 1539 | menu_field{1}='civ1'; |
---|
| 1540 | Data=nc2struct(fileinput,[]); |
---|
| 1541 | if isfield(Data,'patch') && isequal(Data.patch,1) |
---|
| 1542 | menu_field{2}='filter1'; |
---|
| 1543 | end |
---|
| 1544 | if isfield(Data,'civ2') && isequal(Data.civ2,1) |
---|
| 1545 | menu_field{3}='civ2'; |
---|
| 1546 | end |
---|
| 1547 | if isfield(Data,'patch2') && isequal(Data.patch2,1) |
---|
| 1548 | menu_field{4}='filter2'; |
---|
| 1549 | end |
---|
| 1550 | set(handles.field_ref1,'String',menu_field); |
---|
| 1551 | set(handles.field_ref1,'Value',length(menu_field)); |
---|
| 1552 | set(handles.num_MinVel,'Value',2); |
---|
| 1553 | set(handles.num_MinVel,'String','1');%default threshold |
---|
| 1554 | set(handles.ref_fix1,'Enable','on') |
---|
| 1555 | |
---|
| 1556 | %------------------------------------------------------------------------ |
---|
| 1557 | % --- Executes on button press in get_ref_fix2. |
---|
| 1558 | function get_ref_fix2_Callback(hObject, eventdata, handles) |
---|
| 1559 | %------------------------------------------------------------------------ |
---|
| 1560 | if isequal(get(handles.get_ref_fix2,'Value'),1) |
---|
| 1561 | filebase=get(handles.RootPath,'String'); |
---|
| 1562 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1563 | {'*.nc', ' (*.nc)'; |
---|
| 1564 | '*.nc', 'netcdf files '; ... |
---|
| 1565 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1566 | 'Pick a file',filebase); |
---|
| 1567 | fileinput=[PathName FileName]; |
---|
| 1568 | sizf=size(fileinput); |
---|
| 1569 | if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string |
---|
| 1570 | %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); |
---|
| 1571 | [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); |
---|
| 1572 | ref.filebase=fullfile(Path,File); |
---|
[692] | 1573 | % ref.num_a=stra2num(str_a); |
---|
| 1574 | % ref.num_b=stra2num(str_b); |
---|
| 1575 | % ref.num1=str2num(field_count); |
---|
| 1576 | % ref.num2=str2num(str2); |
---|
[597] | 1577 | browse=[];%initialisation |
---|
| 1578 | if ~isequal(ref.ext,'.nc') |
---|
| 1579 | msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') |
---|
| 1580 | return |
---|
| 1581 | end |
---|
| 1582 | set(handles.ref_fix2,'String',[fullfile(ref.subdir,File) '....nc']); |
---|
| 1583 | set(handles.ref_fix2,'UserData',ref) |
---|
| 1584 | menu_field{1}='civ1'; |
---|
| 1585 | Data=nc2struct(fileinput,[]); |
---|
| 1586 | if isfield(Data,'patch') && isequal(Data.patch,1) |
---|
| 1587 | menu_field{2}='filter1'; |
---|
| 1588 | end |
---|
| 1589 | if isfield(Data,'civ2') && isequal(Data.civ2,1) |
---|
| 1590 | menu_field{3}='civ2'; |
---|
| 1591 | end |
---|
| 1592 | if isfield(Data,'patch2') && isequal(Data.patch2,1) |
---|
| 1593 | menu_field{4}='filter2'; |
---|
| 1594 | end |
---|
| 1595 | set(handles.field_ref2,'String',menu_field); |
---|
| 1596 | set(handles.field_ref2,'Value',length(menu_field)); |
---|
| 1597 | set(handles.num_MinVel,'Value',2); |
---|
| 1598 | set(handles.num_MinVel,'String','1');%default threshold |
---|
| 1599 | set(handles.ref_fix2,'Enable','on') |
---|
| 1600 | set(handles.ref_fix2,'Visible','on') |
---|
| 1601 | set(handles.field_ref2,'Visible','on') |
---|
| 1602 | else |
---|
| 1603 | set(handles.ref_fix2,'Visible','off') |
---|
| 1604 | set(handles.field_ref2,'Visible','off') |
---|
| 1605 | end |
---|
| 1606 | |
---|
| 1607 | %------------------------------------------------------------------------ |
---|
| 1608 | function ref_fix1_Callback(hObject, eventdata, handles) |
---|
| 1609 | %------------------------------------------------------------------------ |
---|
| 1610 | set(handles.num_MinVel,'Value',1); |
---|
| 1611 | set(handles.field_ref1,'Value',1) |
---|
| 1612 | set(handles.field_ref1,'String',{' '}) |
---|
| 1613 | set(handles.ref_fix1,'UserData',[]); |
---|
| 1614 | set(handles.ref_fix1,'String',''); |
---|
| 1615 | set(handles.thresh_vel1,'String','0'); |
---|
| 1616 | |
---|
| 1617 | %------------------------------------------------------------------------ |
---|
| 1618 | function ref_fix2_Callback(hObject, eventdata, handles) |
---|
| 1619 | %------------------------------------------------------------------------ |
---|
| 1620 | set(handles.num_MinVel,'Value',1); |
---|
| 1621 | set(handles.field_ref2,'Value',1) |
---|
| 1622 | set(handles.field_ref2,'String',{' '}) |
---|
| 1623 | set(handles.ref_fix2,'UserData',[]); |
---|
| 1624 | set(handles.ref_fix2,'String',''); |
---|
| 1625 | set(handles.num_MinVel,'String','0'); |
---|
| 1626 | |
---|
| 1627 | %------------------------------------------------------------------------ |
---|
| 1628 | % --- TO ABANDON Executes on button press in test_stereo1. |
---|
| 1629 | function CheckStereo_Callback(hObject, eventdata, handles) |
---|
| 1630 | %------------------------------------------------------------------------ |
---|
| 1631 | hparent=get(hObject,'parent'); |
---|
| 1632 | parent_tag=get(hparent,'Tag'); |
---|
| 1633 | hchildren=get(hparent,'children'); |
---|
| 1634 | handle_txtbox=findobj(hchildren,'tag','txt_Mask'); |
---|
| 1635 | if isequal(get(hObject,'Value'),0) |
---|
| 1636 | set(handles.num_SubDomainSize,'Visible','on') |
---|
| 1637 | set(handles.num_FieldSmooth,'Visible','on') |
---|
| 1638 | else |
---|
| 1639 | set(handles.num_SubDomainSize,'Visible','off') |
---|
| 1640 | set(handles.num_FieldSmooth,'Visible','off') |
---|
| 1641 | end |
---|
| 1642 | |
---|
| 1643 | % %------------------------------------------------------------------------ |
---|
| 1644 | % % --- Executes on button press in CheckStereo. |
---|
| 1645 | % function StereoCheck_Callback(hObject, eventdata, handles) |
---|
| 1646 | % %------------------------------------------------------------------------ |
---|
| 1647 | % if isequal(get(handles.CheckStereo,'Value'),0) |
---|
| 1648 | % set(handles.num_subdomainsize,'Visible','on') |
---|
| 1649 | % set(handles.num_FieldSmooth,'Visible','on') |
---|
| 1650 | % else |
---|
[651] | 1651 | |
---|
[597] | 1652 | % set(handles.num_subdomainsize,'Visible','off') |
---|
| 1653 | % set(handles.num_FieldSmooth,'Visible','off') |
---|
| 1654 | % end |
---|
| 1655 | |
---|
[774] | 1656 | |
---|
| 1657 | |
---|
| 1658 | %------------------------------------------------------------------------ |
---|
| 1659 | %----function introduced for the correlation window figure, activated by deleting this window |
---|
| 1660 | function closeview_field(gcbo,eventdata) |
---|
[597] | 1661 | %------------------------------------------------------------------------ |
---|
[774] | 1662 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1663 | if ~isempty(hview_field) |
---|
| 1664 | delete(hview_field) |
---|
| 1665 | end |
---|
| 1666 | |
---|
| 1667 | %------------------------------------------------------------------------ |
---|
| 1668 | % --- Executes on button press in CheckThreshold. |
---|
| 1669 | function CheckThreshold_Callback(hObject, eventdata, handles) |
---|
| 1670 | %------------------------------------------------------------------------ |
---|
| 1671 | huipanel=get(hObject,'parent'); |
---|
| 1672 | obj(1)=findobj(huipanel,'Tag','num_MinIma'); |
---|
| 1673 | obj(2)=findobj(huipanel,'Tag','num_MaxIma'); |
---|
| 1674 | obj(3)=findobj(huipanel,'Tag','title_Threshold'); |
---|
| 1675 | if get(hObject,'Value') |
---|
| 1676 | set(obj,'Visible','on') |
---|
| 1677 | else |
---|
| 1678 | set(obj,'Visible','off') |
---|
| 1679 | end |
---|
[851] | 1680 | set(hObject,'BackgroundColor',[1 0 1]) |
---|
| 1681 | set(handles.configSource,'String','NEW') |
---|
[774] | 1682 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1683 | %%%%%%%%%%%%%% TEST functions |
---|
| 1684 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1685 | %------------------------------------------------------------------------ |
---|
[597] | 1686 | % --- Executes on button press in TestCiv1: prepare the image correlation function |
---|
[774] | 1687 | % activated by mouse motion |
---|
[597] | 1688 | function TestCiv1_Callback(hObject, eventdata, handles) |
---|
| 1689 | %------------------------------------------------------------------------ |
---|
| 1690 | drawnow |
---|
| 1691 | if get(handles.TestCiv1,'Value') |
---|
[651] | 1692 | set(handles.TestCiv1,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch |
---|
[774] | 1693 | [Data,Param.Civ1]=get_param_civ1(handles); |
---|
[692] | 1694 | Grid=civ_matlab(Param);% get the grid of x, y positions set for PIV |
---|
[597] | 1695 | hview_field=view_field(Data); %view the image in the GUI view_field |
---|
| 1696 | set(0,'CurrentFigure',hview_field) |
---|
| 1697 | hhview_field=guihandles(hview_field); |
---|
| 1698 | set(hview_field,'CurrentAxes',hhview_field.PlotAxes) |
---|
| 1699 | ViewData=get(hview_field,'UserData'); |
---|
[598] | 1700 | ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field |
---|
[774] | 1701 | ViewData.PlotAxes.B=imread(Param.Civ1.ImageName_B);%store the second image in the UserData of the GUI view_field |
---|
[597] | 1702 | ViewData.PlotAxes.X=Grid.Civ1_X; %keep the set of points in memeory |
---|
| 1703 | ViewData.PlotAxes.Y=Grid.Civ1_Y; |
---|
| 1704 | set(hview_field,'UserData',ViewData) |
---|
| 1705 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1706 | if isempty(corrfig) |
---|
| 1707 | corrfig=figure; |
---|
| 1708 | set(corrfig,'tag','corrfig') |
---|
| 1709 | set(corrfig,'name','image correlation') |
---|
| 1710 | set(corrfig,'DeleteFcn',{@closeview_field})% |
---|
[692] | 1711 | % end |
---|
| 1712 | set(handles.TestCiv1,'BackgroundColor',[1 0 0]) |
---|
| 1713 | else |
---|
| 1714 | set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red |
---|
| 1715 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1716 | if ~isempty(corrfig) |
---|
| 1717 | delete(corrfig) |
---|
| 1718 | end |
---|
| 1719 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1720 | if ~isempty(hview_field) |
---|
| 1721 | delete(hview_field) |
---|
| 1722 | end |
---|
[597] | 1723 | end |
---|
[774] | 1724 | else |
---|
| 1725 | hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field |
---|
| 1726 | if ~isempty(hview_field) |
---|
| 1727 | delete(hview_field) |
---|
| 1728 | end |
---|
[597] | 1729 | end |
---|
| 1730 | |
---|
[774] | 1731 | % -------------------------------------------------------------------- |
---|
| 1732 | % --- Executes on button press in TestPatch1. |
---|
| 1733 | % -------------------------------------------------------------------- |
---|
| 1734 | function TestPatch1_Callback(hObject, eventdata, handles) |
---|
[597] | 1735 | |
---|
[774] | 1736 | if get(handles.TestPatch1,'Value') |
---|
| 1737 | if get(handles.CheckCiv1,'Value') |
---|
| 1738 | if ~get(handles.CheckFix1,'Value') |
---|
| 1739 | msgbox_uvmat('ERROR','perform FIX1 before testing Patch1') |
---|
| 1740 | return |
---|
| 1741 | end |
---|
| 1742 | set(handles.TestPatch1,'BackgroundColor',[1 1 0]) |
---|
| 1743 | drawnow |
---|
| 1744 | [Data,Param.Civ1]=get_param_civ1(handles); |
---|
| 1745 | Param.Fix1=read_GUI(handles.Fix1); |
---|
| 1746 | [Data,errormsg]=civ_matlab(Param);% get the civ1 results |
---|
| 1747 | errormsg=struct2nc('test_civ1.nc',Data); |
---|
| 1748 | InputFile='test_civ1.nc'; |
---|
| 1749 | if ~isempty(errormsg) |
---|
| 1750 | msgbox_uvmat('ERROR',['error in temporary file writing: ' errormsg]) |
---|
| 1751 | return |
---|
| 1752 | end |
---|
| 1753 | else |
---|
| 1754 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1755 | hhseries=guidata(hseries); |
---|
| 1756 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 1757 | if ~strcmp(InputTable{1,5},'.nc'); |
---|
| 1758 | msgbox_uvmat('ERROR', 'To test patch, first perform Civ1 and Fix1, then open the resulting netcdf file with ''series''') |
---|
| 1759 | return |
---|
| 1760 | end |
---|
| 1761 | set(handles.TestPatch1,'BackgroundColor',[1 1 0]) |
---|
| 1762 | drawnow |
---|
| 1763 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
| 1764 | if strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 1765 | ref_j=str2double(get(handles.ref_j,'String')); |
---|
| 1766 | else |
---|
| 1767 | ref_j=1;%default |
---|
| 1768 | end |
---|
| 1769 | PairString=get(hhseries.PairString,'Data'); |
---|
| 1770 | [i1,i2,j1,j2] = get_file_index(ref_i,ref_j,PairString{1}); |
---|
| 1771 | InputFile=fullfile_uvmat(InputTable{1,1},InputTable{1,2},InputTable{1,3},InputTable{1,5},InputTable{1,4},... |
---|
| 1772 | i1,i2,j1,j2); |
---|
| 1773 | end |
---|
| 1774 | Param=[]; |
---|
| 1775 | Param.Patch1=read_GUI(handles.Patch1); |
---|
| 1776 | Param.Patch1.CivFile=InputFile; |
---|
| 1777 | SmoothingParam=(Param.Patch1.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value |
---|
| 1778 | Data=nc2struct(InputFile); |
---|
| 1779 | NbGood=numel(find(Data.Civ1_FF==0)); |
---|
| 1780 | for irho=1:7 |
---|
| 1781 | Param.Patch1.FieldSmooth=SmoothingParam(irho); |
---|
| 1782 | [Data,errormsg]=civ_matlab(Param);% get the grid of x, y positions set for PIV |
---|
| 1783 | if ~isempty(errormsg) |
---|
| 1784 | msgbox_uvmat('ERROR',errormsg) |
---|
| 1785 | return |
---|
| 1786 | end |
---|
| 1787 | ind_good=find(Data.Civ1_FF==0); |
---|
| 1788 | Civ1_U_Diff=Data.Civ1_U(ind_good)-Data.Civ1_U_smooth(ind_good); |
---|
| 1789 | Civ1_V_Diff=Data.Civ1_V(ind_good)-Data.Civ1_V_smooth(ind_good); |
---|
| 1790 | DiffVel(irho)=sqrt(mean(Civ1_U_Diff.*Civ1_U_Diff+Civ1_V_Diff.*Civ1_V_Diff)); |
---|
| 1791 | NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; |
---|
| 1792 | end |
---|
| 1793 | figure |
---|
| 1794 | semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r') |
---|
| 1795 | grid on |
---|
| 1796 | legend('rms velocity diff. Patch1-Civ1 (pixels)','proportion of excluded vectors (between 0 to 1)') |
---|
| 1797 | XLabel('smoothing parameter') |
---|
| 1798 | YLabel('smoothing effect') |
---|
| 1799 | set(handles.TestPatch1,'BackgroundColor',[1 0 0]) |
---|
[597] | 1800 | else |
---|
[774] | 1801 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1802 | if ~isempty(corrfig) |
---|
| 1803 | delete(corrfig) |
---|
| 1804 | end |
---|
| 1805 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1806 | if ~isempty(hview_field) |
---|
| 1807 | delete(hview_field) |
---|
| 1808 | end |
---|
[597] | 1809 | end |
---|
| 1810 | |
---|
[851] | 1811 | %------------------------------------------------------------------------ |
---|
[774] | 1812 | % --- Executes on button press in TestCiv2. |
---|
[851] | 1813 | %------------------------------------------------------------------------ |
---|
[774] | 1814 | function TestCiv2_Callback(hObject, eventdata, handles) |
---|
[851] | 1815 | drawnow |
---|
| 1816 | if get(handles.TestCiv2,'Value') |
---|
| 1817 | set(handles.TestCiv2,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch |
---|
| 1818 | % TO UPDATE TO UPDATE TO UPDATE TO UPDATE |
---|
| 1819 | [Data,Param.Civ2]=get_param_civ2(handles); |
---|
| 1820 | Grid=civ_matlab(Param);% get the grid of x, y positions set for PIV |
---|
| 1821 | hview_field=view_field(Data); %view the image in the GUI view_field |
---|
| 1822 | set(0,'CurrentFigure',hview_field) |
---|
| 1823 | hhview_field=guihandles(hview_field); |
---|
| 1824 | set(hview_field,'CurrentAxes',hhview_field.PlotAxes) |
---|
| 1825 | ViewData=get(hview_field,'UserData'); |
---|
| 1826 | ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field |
---|
| 1827 | ViewData.PlotAxes.B=imread(Param.Civ1.ImageName_B);%store the second image in the UserData of the GUI view_field |
---|
| 1828 | ViewData.PlotAxes.X=Grid.Civ1_X; %keep the set of points in memeory |
---|
| 1829 | ViewData.PlotAxes.Y=Grid.Civ1_Y; |
---|
| 1830 | set(hview_field,'UserData',ViewData) |
---|
| 1831 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1832 | if isempty(corrfig) |
---|
| 1833 | corrfig=figure; |
---|
| 1834 | set(corrfig,'tag','corrfig') |
---|
| 1835 | set(corrfig,'name','image correlation') |
---|
| 1836 | set(corrfig,'DeleteFcn',{@closeview_field})% |
---|
| 1837 | % end |
---|
| 1838 | set(handles.TestCiv1,'BackgroundColor',[1 0 0]) |
---|
| 1839 | else |
---|
| 1840 | set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red |
---|
| 1841 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1842 | if ~isempty(corrfig) |
---|
| 1843 | delete(corrfig) |
---|
| 1844 | end |
---|
| 1845 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1846 | if ~isempty(hview_field) |
---|
| 1847 | delete(hview_field) |
---|
| 1848 | end |
---|
| 1849 | end |
---|
| 1850 | else |
---|
| 1851 | hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field |
---|
| 1852 | if ~isempty(hview_field) |
---|
| 1853 | delete(hview_field) |
---|
| 1854 | end |
---|
| 1855 | end |
---|
[597] | 1856 | |
---|
| 1857 | |
---|
| 1858 | %'nomtype2pair': creates nomencalture for index pairs knowing the image nomenclature |
---|
| 1859 | %--------------------------------------------------------------------- |
---|
| 1860 | function NomTypeNc=nomtype2pair(NomTypeIma,mode) |
---|
| 1861 | %--------------------------------------------------------------------- |
---|
| 1862 | % OUTPUT: |
---|
| 1863 | % NomTypeNc |
---|
| 1864 | %--------------------------------------------------------------------- |
---|
| 1865 | % INPUT: |
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| 1866 | % 'NomTypeIma': string defining the kind of nomenclature used for images |
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| 1867 | |
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| 1868 | NomTypeNc=NomTypeIma;%default |
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| 1869 | switch mode |
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| 1870 | case 'pair j1-j2' |
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| 1871 | if ~isempty(regexp(NomTypeIma,'a$')) |
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| 1872 | NomTypeNc=[NomTypeIma 'b']; |
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| 1873 | elseif ~isempty(regexp(NomTypeIma,'A$')) |
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| 1874 | NomTypeNc=[NomTypeIma 'B']; |
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| 1875 | else |
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| 1876 | r=regexp(NomTypeIma,'(?<num1>\d+)_(?<num2>\d+)$','names'); |
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| 1877 | if ~isempty(r) |
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| 1878 | NomTypeNc='_1_1-2'; |
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| 1879 | end |
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| 1880 | end |
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| 1881 | case 'series(Dj)' |
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| 1882 | % r=regexp(NomTypeIma,'(?<num1>\d+)_(?<num2>\d+)$','names'); |
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| 1883 | % if ~isempty(r) |
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| 1884 | NomTypeNc='_1_1-2'; |
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| 1885 | % end |
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| 1886 | case 'series(Di)' |
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| 1887 | r=regexp(NomTypeIma,'(?<num1>\d+)_(?<num2>\d+)$','names'); |
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| 1888 | if ~isempty(r) |
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| 1889 | NomTypeNc='_1-2_1'; |
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| 1890 | else |
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| 1891 | NomTypeNc='_1-2'; |
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| 1892 | end |
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| 1893 | end |
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| 1894 | |
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| 1895 | |
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[645] | 1896 | %------------------------------------------------------------------------ |
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| 1897 | % --- determine the list of index pairs of processing file |
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[692] | 1898 | function [ind1,ind2,mode]=... |
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[645] | 1899 | find_pair_indices(str_civ,i_series,j_series,MinIndex_i,MaxIndex_i,MinIndex_j,MaxIndex_j) |
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| 1900 | %------------------------------------------------------------------------ |
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| 1901 | ind1=''; |
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| 1902 | ind2=''; |
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| 1903 | r=regexp(str_civ,'^\D(?<ind>[i|j])=( -| )(?<num1>\d+)\|(?<num2>\d+)','names'); |
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| 1904 | if ~isempty(r) |
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| 1905 | mode=['D' r.ind]; |
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| 1906 | ind1=stra2num(r.num1); |
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| 1907 | ind2=stra2num(r.num2); |
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| 1908 | else |
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| 1909 | mode='burst'; |
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| 1910 | r=regexp(str_civ,'^j= (?<num1>[a-z])-(?<num2>[a-z])','names'); |
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| 1911 | if ~isempty(r) |
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| 1912 | NomTypeNc='_1ab'; |
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| 1913 | else |
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| 1914 | r=regexp(str_civ,'^j= (?<num1>[A-Z])-(?<num2>[A-Z])','names'); |
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| 1915 | if ~isempty(r) |
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| 1916 | NomTypeNc='_1AB'; |
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| 1917 | else |
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| 1918 | r=regexp(str_civ,'^j= (?<num1>\d+)-(?<num2>\d+)','names'); |
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| 1919 | if ~isempty(r) |
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| 1920 | NomTypeNc='_1_1-2'; |
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| 1921 | end |
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| 1922 | end |
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| 1923 | end |
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| 1924 | if isempty(r) |
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| 1925 | display('wrong pair mode input option') |
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| 1926 | else |
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| 1927 | ind1=stra2num(r.num1); |
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| 1928 | ind2=stra2num(r.num2); |
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| 1929 | end |
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| 1930 | end |
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[774] | 1931 | |
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| 1932 | %------------------------------------------------------------------------ |
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| 1933 | % --- fill civ_input with the parameters retrieved from an input Civ file |
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| 1934 | %------------------------------------------------------------------------ |
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| 1935 | function fill_civ_input(Data,handles) |
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| 1936 | |
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| 1937 | %% Civ param |
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| 1938 | % lists of parameters to enter |
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| 1939 | ListParamNum={'CorrBoxSize','SearchBoxSize','SearchBoxShift','Dx','Dy','Dz','MinIma','MaxIma'};% list of numerical values (to transform in strings) |
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| 1940 | ListParamValue={'CorrSmooth','CheckGrid','CheckMask','CheckThreshold'}; |
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| 1941 | ListParamString={'Grid','Mask'}; |
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| 1942 | % CorrSmooth ?? |
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| 1943 | option={'Civ1','Civ2'}; |
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| 1944 | for ichoice=1:2 |
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| 1945 | if isfield(Data,[option{ichoice} '_CorrBoxSize']) |
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| 1946 | fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) |
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| 1947 | end |
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| 1948 | end |
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| 1949 | |
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| 1950 | %% Fix param |
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| 1951 | option={'Fix1','Fix2'}; |
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| 1952 | for ichoice=1:2 |
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| 1953 | if isfield(Data,[option{ichoice} '_CheckFmin2']) |
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| 1954 | ListParamNum={'MinVel','MaxVel','MinCorr'};% list of numerical values (to transform in strings) |
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| 1955 | ListParamValue={'CheckFmin2','CheckF3','CheckF4'}; |
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| 1956 | ListParamString={'ref_fix_1'}; |
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| 1957 | fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) |
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| 1958 | end |
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| 1959 | end |
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| 1960 | |
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| 1961 | %% Patch param |
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| 1962 | option={'Patch1','Patch2'}; |
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| 1963 | for ichoice=1:2 |
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| 1964 | if isfield(Data,[option{ichoice} '_FieldSmooth']) |
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| 1965 | ListParamNum={'FieldSmooth','MaxDiff','SubDomainSize'};% list of numerical values (to transform in strings) |
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| 1966 | ListParamValue={}; |
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| 1967 | ListParamString={}; |
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| 1968 | fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) |
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| 1969 | end |
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| 1970 | end |
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| 1971 | %------------------------------------------------------------------------ |
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| 1972 | % --- fill a panel of civ_input with the parameters retrieved from an input Civ file |
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| 1973 | %------------------------------------------------------------------------ |
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| 1974 | function fill_panel(Data,handles,panel,ListParamNum,ListParamValue,ListParamString) |
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| 1975 | children=get(handles.(panel),'children');%handles of the children of the input GUI with handle 'GUI_handle' |
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| 1976 | handles_panel=[]; |
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| 1977 | for ichild=1:numel(children) |
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| 1978 | if ~isempty(get(children(ichild),'tag')) |
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| 1979 | handles_panel.(get(children(ichild),'tag'))=children(ichild); |
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| 1980 | end |
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| 1981 | end |
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| 1982 | for ilist=1:numel(ListParamNum) |
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| 1983 | ParamName=ListParamNum{ilist}; |
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| 1984 | CivParamName=[panel '_' ParamName]; |
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| 1985 | if isfield(Data,CivParamName) |
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| 1986 | for icoord=1:numel(Data.(CivParamName)) |
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| 1987 | if numel(Data.(CivParamName))>1 |
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| 1988 | Tag=['num_' ParamName '_' num2str(icoord)]; |
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| 1989 | else |
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| 1990 | Tag=['num_' ParamName]; |
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| 1991 | end |
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| 1992 | if isfield(handles_panel,Tag) |
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| 1993 | set(handles_panel.(Tag),'String',num2str(Data.(CivParamName)(icoord))) |
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| 1994 | set(handles_panel.(Tag),'Visible','on') |
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| 1995 | end |
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| 1996 | end |
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| 1997 | end |
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| 1998 | end |
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| 1999 | for ilist=1:numel(ListParamValue) |
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| 2000 | ParamName=ListParamValue{ilist}; |
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| 2001 | CivParamName=[panel '_' ParamName]; |
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| 2002 | if strcmp(ParamName,'CorrSmooth') |
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| 2003 | ParamName=['num_' ParamName]; |
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| 2004 | end |
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| 2005 | if isfield(Data,CivParamName) |
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| 2006 | if isfield(handles_panel,ParamName) |
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| 2007 | set(handles_panel.(ParamName),'Value',Data.(CivParamName)) |
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| 2008 | end |
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| 2009 | end |
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| 2010 | end |
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| 2011 | for ilist=1:numel(ListParamString) |
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| 2012 | ParamName=ListParamString{ilist}; |
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| 2013 | CivParamName=[panel '_' ParamName]; |
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| 2014 | if isfield(Data,CivParamName) |
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| 2015 | if isfield(handles_panel,ParamName) |
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| 2016 | set(handles_panel.(ParamName),'String',Data.(CivParamName)) |
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| 2017 | end |
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| 2018 | end |
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| 2019 | end |
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| 2020 | |
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| 2021 | |
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| 2022 | %------------------------------------------------------------------------ |
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| 2023 | function [Data,par_civ1]=get_param_civ1(handles) |
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| 2024 | |
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| 2025 | ref_i=str2double(get(handles.ref_i,'String'));% read reference i index |
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| 2026 | if strcmp(get(handles.ref_j,'Visible'),'on') |
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| 2027 | ref_j=str2double(get(handles.ref_j,'String'));% read reference j index if relevant |
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| 2028 | else |
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| 2029 | ref_j=1;%default j index |
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| 2030 | end |
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| 2031 | Data.ListVarName={'ny','nx','A'}; |
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| 2032 | Data.VarDimName= {'ny','nx',{'ny','nx'}}; |
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| 2033 | hseries=findobj(allchild(0),'Tag','series'); |
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| 2034 | hhseries=guidata(hseries); |
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| 2035 | InputTable=get(hhseries.InputTable,'Data'); |
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| 2036 | ind_A=1; |
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| 2037 | if strcmp(InputTable{1,5},'.nc'); |
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| 2038 | ind_A=2; |
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| 2039 | end |
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| 2040 | list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs |
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| 2041 | PairString=list_pair{get(handles.ListPairCiv1,'Value')}; |
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| 2042 | [ind1,ind2,mode]=find_pair_indices(PairString,ref_i,ref_j);%,MinIndex_i,MaxIndex_i,MinIndex_j,MaxIndex_j) |
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| 2043 | switch mode |
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| 2044 | case 'Di' |
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| 2045 | i1=ref_i-ind1; |
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| 2046 | i2=ref_i+ind2; |
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| 2047 | j1=ref_j; |
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| 2048 | j2=ref_j; |
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| 2049 | case 'Dj' |
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| 2050 | i1=ref_i; |
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| 2051 | i2=ref_i; |
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| 2052 | j1=ref_j-ind1; |
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| 2053 | j2=ref_j+ind2; |
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| 2054 | case 'burst' |
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| 2055 | i1=ref_i; |
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| 2056 | i2=ref_i; |
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| 2057 | j1=ind1; |
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| 2058 | j2=ind2; |
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| 2059 | end |
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| 2060 | ImageName_A=fullfile_uvmat(InputTable{ind_A,1},InputTable{ind_A,2},InputTable{ind_A,3},InputTable{ind_A,5},InputTable{ind_A,4},... |
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| 2061 | i1,[],j1); |
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| 2062 | ImageName_B=fullfile_uvmat(InputTable{ind_A,1},InputTable{ind_A,2},InputTable{ind_A,3},InputTable{ind_A,5},InputTable{ind_A,4},... |
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| 2063 | i2,[],j2); |
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| 2064 | Data.A=imread(ImageName_A); % read the first image |
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| 2065 | if ndims(Data.A)==3 %case of color image |
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| 2066 | Data.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; |
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| 2067 | end |
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| 2068 | Data.ny=[size(Data.A,1) 1]; |
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| 2069 | Data.nx=[1 size(Data.A,2)]; |
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| 2070 | Data.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly |
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| 2071 | par_civ1=read_GUI(handles.Civ1); |
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[784] | 2072 | FileInfo=get_file_info(ImageName_A); |
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[783] | 2073 | par_civ1.FileTypeA=FileInfo.FileType; |
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[774] | 2074 | par_civ1.ImageWidth=size(Data.A,2); |
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| 2075 | par_civ1.ImageHeight=size(Data.A,1); |
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| 2076 | par_civ1.Mask='all';% will provide only the grid set for PIV, no image correlation |
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| 2077 | par_civ1.FrameIndexA=num2str(i1); |
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| 2078 | par_civ1.FrameIndexB=num2str(i2); |
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| 2079 | par_civ1.ImageName_B=ImageName_B; |
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| 2080 | |
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[851] | 2081 | %------------------------------------------------------------------------ |
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[824] | 2082 | % --- Executes on button press in InportParam. |
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[851] | 2083 | %------------------------------------------------------------------------ |
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[824] | 2084 | function InportParam_Callback(hObject, eventdata, handles) |
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| 2085 | hseries=findobj(allchild(0),'Tag','series'); |
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| 2086 | hhseries=guidata(hseries); |
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| 2087 | InputTable=get(hhseries.InputTable,'Data');% read the input file(s) table in the GUI series |
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| 2088 | oldfile=InputTable{1,1}; |
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| 2089 | if isempty(oldfile) |
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| 2090 | % use a file name stored in prefdir |
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| 2091 | dir_perso=prefdir; |
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| 2092 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
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| 2093 | if exist(profil_perso,'file') |
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| 2094 | h=load (profil_perso); |
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| 2095 | if isfield(h,'RootPath') && ischar(h.RootPath) |
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| 2096 | oldfile=h.RootPath; |
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| 2097 | end |
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| 2098 | end |
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| 2099 | end |
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| 2100 | filexml=uigetfile_uvmat('pick a xml parameter file for civ',oldfile,'.xml');% get the xml file containing processing parameters |
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| 2101 | %proceed only if a file has been introduced by the browser |
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| 2102 | if ~isempty(filexml) |
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| 2103 | Param=xml2struct(filexml);% read the input xml file as a Matlab structure |
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| 2104 | |
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| 2105 | % Param.Action.RUN=0; %desactivate the input RUN=1 |
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| 2106 | if ~isfield(Param,'InputTable')||~isfield(Param,'IndexRange') |
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| 2107 | msgbox_uvmat('ERROR','invalid config file: open a file in a folder ''/0_XML''') |
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| 2108 | return |
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| 2109 | end |
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| 2110 | check_input=0; |
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| 2111 | if isfield(Param,'ActionInput') |
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| 2112 | if isfield(Param.ActionInput,'Program')&& strcmp(Param.ActionInput.Program,'civ_series') |
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| 2113 | fill_GUI(Param.ActionInput,handles.civ_input)% fill the elements of the GUI series with the input parameters |
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| 2114 | check_input=1; |
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| 2115 | update_CivOptions(handles,0) |
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| 2116 | |
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| 2117 | end |
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| 2118 | end |
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| 2119 | if ~check_input |
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| 2120 | msgbox_uvmat('ERROR','invalid config file (not for civ_series') |
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| 2121 | return |
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| 2122 | end |
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| 2123 | end |
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[849] | 2124 | |
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[850] | 2125 | % --- Executes on selection change in iterate. |
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| 2126 | function iterate_Callback(hObject, eventdata, handles) |
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[851] | 2127 | |
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| 2128 | %------------------------------------------------------------------------ |
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| 2129 | % --- Executes on key press with selection of a uicontrol |
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| 2130 | %------------------------------------------------------------------------ |
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| 2131 | function keyboard_callback(hObject,eventdata,handles) |
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| 2132 | |
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| 2133 | ListExclude={'CheckCiv1','CheckFix1','CheckPatch1','CheckCiv2','CheckFix2','CheckPatch2','ref_i'}; |
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| 2134 | if isempty(find(strcmp(get(gco,'Tag'),ListExclude),1))% if the selected uicontrol is not in the Exclude list |
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| 2135 | set(gco,'BackgroundColor',[1 0 1]) |
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| 2136 | drawnow |
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| 2137 | set(handles.ConfigSource,'String','NEW')% indicate that the configuration is new |
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| 2138 | end |
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