%'civ_input': function associated with the interface 'civ_input.fig' for PIV, spline interpolation and stereo PIV (patch) %------------------------------------------------------------------------ % provides an interface for the software menucivx % function varargout = civ_input(varargin) % provides an interface for the software menucivx % %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA % Copyright Joel Sommeria, 2011, LEGI / CNRS-UJF-INPG, sommeria@legi.grenoble-inp.fr %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA % This file is part of the toolbox UVMAT. % % UVMAT is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published by % the Free Software Foundation; either version 2 of the License, or % (at your option) any later version. % % UVMAT is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License (file UVMAT/COPYING.txt) for more details. %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA function varargout = civ_input(varargin) %TODO: search range % Last Modified by GUIDE v2.5 25-May-2013 12:37:21 % Begin initialization code - DO NOT EDIT gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @civ_input_OpeningFcn, ... 'gui_OutputFcn', @civ_input_OutputFcn, ... 'gui_LayoutFcn', [] , ... 'gui_Callback', []); if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback$','once')) gui_State.gui_Callback = str2func(varargin{1}); end if nargout [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); else gui_mainfcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT %------------------------------------------------------------------------ % --- Executes just before civ_input is made visible. function civ_input_OpeningFcn(hObject, eventdata, handles, Param) %------------------------------------------------------------------------ % This function has no output args, see OutputFcn. %% General settings handles.output = Param; guidata(hObject, handles); % Update handles structure set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) SeriesData.ParentHandle=gcbf; SeriesData=get(gcbf,'UserData'); % relevant data in gcbf:.FileType,.FileInfo,.Time,.TimeUnit,.GeometryCalib{1}; %% set visibility options: case civ_matlab if strcmp(Param.Action.ActionName,'civ_series') set(handles.Program,'String','civ_series') set(handles.num_MaxDiff,'Visible','on') set(handles.num_MaxVel,'Visible','on') set(handles.title_MaxVel,'Visible','on') set(handles.title_MaxDiff,'Visible','on') set(handles.num_Nx,'Visible','off') set(handles.num_Ny,'Visible','off') set(handles.title_Nx,'Visible','off') set(handles.title_Ny,'Visible','off') set(handles.num_CorrSmooth,'Style','popupmenu') set(handles.num_CorrSmooth,'Value',1) set(handles.num_CorrSmooth,'String',{'1';'2'}) set(handles.CheckThreshold,'Visible','on') set(handles.CheckDeformation,'Value',0)% desactivate (work in progress) set(handles.CheckDecimal,'Value',0)% desactivate (work in progress) end %% input file info RootPath=Param.InputTable{1,1}; %set(handles.RootPath,'String',RootPath) RootFile=Param.InputTable{1,3}; SubDir=Param.InputTable{1,2}; NomTypeInput=Param.InputTable{1,4}; FileExt=Param.InputTable{1,5}; FileType=SeriesData.FileType{1}; FileInfo=SeriesData.FileInfo{1}; FileInput=SeriesData.RefFile{1}; %% case of netcdf file as input, get the processing stage and look for corresponding images % imageinput=fileinput;%default % TODO: insert image input in the GUI series ind_opening=0;%default NomTypeNc=''; switch FileType case {'image','multimage','video','mmreader'} NomTypeImaA=NomTypeInput; iview_image=1;%line # for the input images case 'civdata' if ~strcmp(Param.Action.ActionName,'civ_series') msgbox_uvmat('ERROR','bad input data file: open an image or a nc file from civ_series') return end NomTypeNc=NomTypeInput; ind_opening=FileInfo.CivStage; if isempty(regexp(NomTypeInput,'[ab|AB|-]', 'once')) set(handles.ListCompareMode,'Value',2) %mode displacement advised if the nomencalture does not involve index pairs set(handles.RootFile_1,'Visible','On'); else set(handles.ListCompareMode,'Value',1) % set(handles.RootFile_1,'Visible','Off'); end imageinput=''; Data=nc2struct(FileInput,'ListGlobalAttribute','Civ2_ImageA','Civ1_ImageA','Civ2_ImageB','Civ1_ImageB'); [PathCiv1_ImageA,Civ1_ImageA,FileExtA]=fileparts(Data.Civ1_ImageA); [PathCiv1_ImageB,Civ1_ImageB,FileExtA]=fileparts(Data.Civ1_ImageB); % set(handles.Civ1_ImageA,'String',Civ1_ImageA) % set(handles.Civ1_ImageB,'String',Civ1_ImageB) if ~isempty(Data.Civ2_ImageA) [PathCiv2_ImageA,Civ2_ImageA,FileExtA]=fileparts(Data.Civ2_ImageA); [PathCiv2_ImageB,Civ2_ImageB,FileExtA]=fileparts(Data.Civ2_ImageB); % set(handles.Civ2_ImageA,'String',Civ2_ImageA) % set(handles.Civ2_ImageB,'String',Civ2_ImageB) end hhseries=guidata(gcbf); if size(Param.InputTable,1)==1 series('display_file_name',hhseries,Data.Civ1_ImageA,'append'); end if isfield(Data,'Txt') errormsg=Data.Txt; return %TODO: introduce the image in the input table of series end [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ1_ImageA); [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ1_ImageB); iview_image=2;%line # for the input images case 'civxdata'% case of civx data, NomTypeNc=NomTypeInput; ind_opening=FileInfo.CivStage; set(handles.Program,'Value',3) %select Cix by default msgbox_uvmat('ERROR','old civX convention, use the GUI civ') return end %% TODO: get corresponding image in nc case %% reinitialise menus set(handles.ListPairMode,'Value',1) set(handles.ListPairMode,'String',{''}) set(handles.ListPairCiv1,'Value',1) set(handles.ListPairCiv1,'String',{''}) set(handles.ListPairCiv2,'Value',1) set(handles.ListPairCiv2,'String',{''}) fill_GUI(Param,hObject);%fill the GUI with the parameters retrieved from the input Param %% prepare the GUI with input parameters set(handles.ListCompareMode,'Visible','on') %display the parameters stored on the GUI series set(handles.ref_i,'String',num2str(Param.IndexRange.first_i)) if isfield(Param.IndexRange,'first_j') set(handles.ref_j,'String',num2str(Param.IndexRange.first_j)) end %% set the civ_input options depending on the input file content when a nc file has been opened ListOptions={'CheckCiv1', 'CheckFix1' 'CheckPatch1', 'CheckCiv2', 'CheckFix2', 'CheckPatch2'}; checkbox=zeros(size(ListOptions));%default if ind_opening==0%case of image opening, start with Civ1 for index=1:numel(ListOptions) checkbox(index)=get(handles.(ListOptions{index}),'Value'); end index_max=find(checkbox, 1, 'last' ); if isempty(index_max),index_max=1;end for index=1:index_max set(handles.(ListOptions{index}),'Value',1)% select all operations starting from CIV1 end else for index = 1:min(ind_opening,5) set(handles.(ListOptions{index}),'value',0) end set(handles.(ListOptions{min(ind_opening+1,6)}),'value',1) for index = ind_opening+2:6 set(handles.(ListOptions{index}),'value',0) end end %list_operation={'CheckCiv1','CheckFix1','CheckPatch1','CheckCiv2','CheckFix2','CheckPatch2'}; %set(handles.(ListOptions{min(ind_opening+1,6)}),'value',1) %% set the menus of image pairs and default selection for civ_input %%%%%%%%%%%%%%%%%%% MaxIndex_i=Param.IndexRange.MaxIndex_i(iview_image); MinIndex_i=Param.IndexRange.MinIndex_i(iview_image); MaxIndex_j=1;%default MinIndex_j=1; if isfield(Param.IndexRange,'MaxIndex_j')&&isfield(Param.IndexRange,'MinIndex_j') MaxIndex_j=Param.IndexRange.MaxIndex_j(iview_image); MinIndex_j=Param.IndexRange.MinIndex_j(iview_image); end CivInputData.MaxIndex_i=MaxIndex_i; CivInputData.MaxIndex_j=MaxIndex_j; CivInputData.MinIndex_i=MinIndex_i; CivInputData.MinIndex_j=MinIndex_j; if ~isfield(Param.IndexRange,'first_j') set(handles.ListPairMode,'Value',1) set(handles.ListPairMode,'String',{'series(Di)'}) elseif MaxIndex_i==1 && MaxIndex_j>1% simple series in j set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)'}) if MaxIndex_j <= 10 set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large end %elseif ~(strcmp(FileType,'video') || strcmp(FileType,'mmreader')) else set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)';'series(Di)'})%multiple choice if strcmp(NomTypeNc,'_1-2_1') set(handles.ListPairMode,'Value',3)% advise 'series(Di)' elseif MaxIndex_j <= 10 set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large end end %% transfer the time from the GUI series, or use file index by default time=[]; TimeUnit='frame'; %default CoordUnit='';%default pxcm_search=1; if isfield(SeriesData,'Time') && ~isempty(SeriesData.Time{1}) time=SeriesData.Time{1}; %transform .Time to a column vector if it is a line vector thenomenclature uses a single index: correct possible bug in xml % if isequal(MaxIndex_i,1) && ~isequal(MaxIndex_j,1)% .Time is a line vector % if numel(nom_type_read)>=2 && isempty(regexp(nom_type_read(2:end),'\D','once')) % time=time'; % MaxIndex_i=MaxIndex_j; % MaxIndex_j=1; % end % end end if isfield(Param.IndexRange,'TimeUnit')&&~isempty(Param.IndexRange.TimeUnit) TimeUnit=Param.IndexRange.TimeUnit; end if isfield(SeriesData,'TimeSource') set(handles.ImaDoc,'String',SeriesData.TimeSource) end if isfield(SeriesData,'GeometryCalib') tsai=SeriesData.GeometryCalib; if isfield(tsai,'fx_fy') pxcm_search=max(tsai.fx_fy(1),tsai.fx_fy(2));%pixels:cm estimated for the search range end if isfield(tsai,'CoordUnit') CoordUnit=tsai.CoordUnit; end end %% timing display %show the reference image edit box if relevant (not needed for movies or in the absence of time information if numel(time)>=2 % if there are at least two time values to define dt if size(time,1)MaxIndex_i||num_ref_iMaxIndex_j||num_ref_j0)); MinIndex_j=min(j1_series(j1_series>0)); MaxIndex_i=max(i1_series(i1_series>0)); MaxIndex_j=max(j1_series(j1_series>0)); %% look for an image documentation file XmlFileName=find_imadoc(RootPath,SubDir,RootFile,ImaExt); if isempty(XmlFileName) if (strcmp(FileType,'video') || strcmp(FileType,'mmreader')) ext_imadoc=ImaExt;% the timing from the video movie is used else ext_imadoc=''; end else [tild,tild,ext_imadoc]=fileparts(XmlFileName); end set(handles.ImaDoc,'String',ext_imadoc)% display the extension name for the image documentation file used %% update i and j index range if a nc file has been opened or pb withmin max image indices: % then set first and last to the inputfile index by default first_i=str2num(get(handles.MinIndex_i,'String')); last_i=str2num(get(handles.last_i,'String')); if isempty(first_i) || isempty(last_i)||isempty(MinIndex_i)||isempty(MaxIndex_i)||ind_opening~=0 || isempty(first_i) || isempty(last_i)|| first_iMaxIndex_i first_i=num_ref_i; last_i=num_ref_i; set(handles.MinIndex_i,'String',num2str(first_i)); set(handles.last_i,'String',num2str(last_i));% end %j index range first_j=str2num(get(handles.MinIndex_j,'String')); last_j=str2num(get(handles.last_j,'String')); if isempty(first_j) || isempty(last_j)||isempty(MinIndex_j)||isempty(MaxIndex_j)||ind_opening~=0 || first_jMaxIndex_j first_j=num_ref_j; last_j=num_ref_j; set(handles.MinIndex_j,'String',num2str(first_j)); set(handles.last_j,'String',num2str(last_j));% end if num_ref_i>last_i || num_ref_ilast_j || num_ref_jlength(list_civ2) % list_civ2=list_civ1; % index_civ2=index_civ1; % end % str_civ2=list_civ2{index_civ2};%string defining the image pairs for civ2 % % if isequal (mode,'series(Di)') % lastfield=str2double(get(handles.MaxIndex_i,'String')); % i1_civ1=ref_i-floor(index_civ1/2)*ones(size(ref_i));% set of first image numbers % i2_civ1=ref_i+ceil(index_civ1/2)*ones(size(ref_i)); % j1_civ1=ref_j; % j2_civ1=ref_j; % i1_civ2=ref_i-floor(index_civ2/2)*ones(size(ref_i)); % i2_civ2=ref_i+ceil(index_civ2/2)*ones(size(ref_i)); % j1_civ2=ref_j; % j2_civ2=ref_j; % % % adjust the first and last field number % lastfield=str2double(get(handles.MaxIndex_i,'String')); % if isnan(lastfield) % indsel=find((i1_civ1 >= 1)&(i1_civ2 >= 1)); % else % indsel=find((i2_civ1 <= lastfield)&(i2_civ2 <= lastfield)&(i1_civ1 >= 1)&(i1_civ2 >= 1)); % end % if length(indsel)>=1 % firstind=indsel(1); % lastind=indsel(end); % set(handles.MinIndex_i,'String',num2str(ref_i(firstind)))%update the display of first and last fields % set(handles.last_i,'String',num2str(ref_i(lastind))) % ref_i=ref_i(indsel); % i1_civ1=i1_civ1(indsel); % i1_civ2=i1_civ2(indsel); % i2_civ1=i2_civ1(indsel); % i2_civ2=i2_civ2(indsel); % end % elseif isequal (mode,'series(Dj)') % lastfield_j=str2double(get(handles.MaxIndex_j,'String')); % i1_civ1=ref_i;% set of first image numbers % i2_civ1=ref_i; % j1_civ1=ref_j-floor(index_civ1/2)*ones(size(ref_j)); % j2_civ1=ref_j+ceil(index_civ1/2)*ones(size(ref_j)); % i1_civ2=ref_i; % i2_civ2=ref_i; % j1_civ2=ref_j-floor(index_civ2/2)*ones(size(ref_j)); % j2_civ2=ref_j+ceil(index_civ2/2)*ones(size(ref_j)); % % adjust the first and last field number % if isnan(lastfield_j) % indsel=find((j1_civ1 >= 1)&(j1_civ2 >= 1)); % else % indsel=find((j2_civ1 <= lastfield_j)&(j2_civ2 <= lastfield_j)&(j1_civ1 >= 1)&(j1_civ2 >= 1)); % end % if length(indsel)>=1 % firstind=indsel(1); % lastind=indsel(end); % set(handles.MinIndex_j,'String',num2str(ref_j(firstind)))%update the display of first and last fields % set(handles.last_j,'String',num2str(ref_j(lastind))) % ref_j=ref_j(indsel); % j1_civ1=j1_civ1(indsel); % j2_civ1=j2_civ1(indsel); % j1_civ2=j1_civ2(indsel); % j2_civ2=j2_civ2(indsel); % end % elseif isequal(mode,'pair j1-j2') %case of bursts (png_old or png_2D) % displ_num=get(handles.ListPairCiv1,'UserData'); % i1_civ1=ref_i; % i2_civ1=ref_i; % j1_civ1=displ_num(1,index_civ1); % j2_civ1=displ_num(2,index_civ1); % i1_civ2=ref_i; % i2_civ2=ref_i; % j1_civ2=displ_num(1,index_civ2); % j2_civ2=displ_num(2,index_civ2); % elseif isequal(mode,'displacement') % i1_civ1=ref_i; % i2_civ1=ref_i; % j1_civ1=ref_j; % j2_civ1=ref_j; % i1_civ2=ref_i; % i2_civ2=ref_i; % j1_civ2=ref_j; % j2_civ2=ref_j; % end %------------------------------------------------------------------------ % --- Executes on button press in ListCompareMode. function ListCompareMode_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ ListCompareMode=get(handles.ListCompareMode,'String'); option=ListCompareMode{get(handles.ListCompareMode,'Value')}; hseries=findobj(allchild(0),'Tag','series'); SeriesData=get(hseries,'UserData'); check_nc=strcmp(SeriesData.FileType{1},'.nc'); ImageType=SeriesData.FileType(2:end); if check_nc ImageType=SeriesData.FileType(2:end); else ImageType=SeriesData.FileType; end hhseries=guidata(hseries); InputTable=get(hhseries.InputTable,'Data'); OriginIndex='off'; PairIndices='off'; DoubleInputSeries='off'; switch option case 'PIV' PairIndices='on';% needs to define index pairs for PIV case 'PIV volume' PairIndices='on';% needs to define index pairs for PIV set(handles.ListPairMode,'Value',1) set(handles.ListPairMode,'String',{'series(Di)'}) ListPairMode_Callback(hObject, eventdata, handles) % set(handles.RootFile_1,'Visible','Off'); % set(handles.sub_txt,'Visible','off') % set(handles.RootFile_1,'String',[]); % mode_store=get(handles.ListCompareMode,'UserData'); % set(handles.ListPairMode,'Visible','on') % set(handles.ListPairMode,'Value',1) % set(handles.ListPairMode,'String',{'series(Di)'}) % set(handles.CheckStereo,'Value',0) % set(handles.last_j,'String',get(handles.MaxIndex_j,'String'))% select the whole volume scan by default % set(handles.incr_i,'String',num2str(2))% case 'displacement' OriginIndex='on';%define a frame origin for displacement case 'shift' if numel(ImageType)==1 fileinput=uigetfile_uvmat('pick a second file series for synchronous shift',InputTable{check_nc+1}); if ~isempty(fileinput) series( 'display_file_name',hhseries,fileinput,'append') end end end set(handles.num_OriginIndex,'Visible',OriginIndex) set(handles.OriginIndex_title,'Visible',OriginIndex) set(handles.PairIndices,'Visible',PairIndices) ListPairMode_Callback(hObject, eventdata, handles) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Pair Indices %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in ListPairMode. function ListPairMode_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ compare_list=get(handles.ListCompareMode,'String'); val=get(handles.ListCompareMode,'Value'); compare=compare_list{val}; if strcmp(compare,'displacement')||strcmp(compare,'shift') mode='displacement'; else mode_list=get(handles.ListPairMode,'String'); if ischar(mode_list) mode_list={mode_list}; end mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; end % displ_num=[];%default ref_i=str2double(get(handles.ref_i,'String')); % last_i=str2num(get(handles.last_i,'String')); CivInputData=get(handles.civ_input,'UserData'); TimeUnit=get(handles.TimeUnit,'String'); checkframe=strcmp(TimeUnit,'frame'); time=CivInputData.Time; siztime=size(CivInputData.Time); nbfield=siztime(1)-1; nbfield2=siztime(2)-1; indchosen=1; %%first pair selected by default %displ_num used to define the indices of the civ_input pairs % in mode 'pair j1-j2', j1 and j2 are the file indices, else the indices % are relative to the reference indices ref_i and ref_j respectively. if isequal(mode,'pair j1-j2')%| isequal(mode,'st_pair j1-j2') dt=1; displ=''; index=0; numlist_a=[]; numlist_B=[]; %get all the time intervals in bursts displ_dt=1;%default nbfield2=min(nbfield2,10);%limitate the number of pairs to 10x10 for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'pair j1-j2' mode for numod_b=(numod_a+1):nbfield2 index=index+1; numlist_a(index)=numod_a; numlist_b(index)=numod_b; if size(time,2)>1 && ~checkframe dt(numod_a,numod_b)=CivInputData.Time(ref_i+1,numod_b+1)-CivInputData.Time(ref_i+1,numod_a+1);%first time interval dt displ_dt(index)=dt(numod_a,numod_b); else displ_dt(index)=1; end end end [dtsort,indsort]=sort(displ_dt); if ~isempty(numlist_a) displ_num(1,:)=numlist_a(indsort); displ_num(2,:)=numlist_b(indsort); end displ_num(3,:)=0; displ_num(4,:)=0; enable_j(handles, 'off') elseif isequal(mode,'series(Dj)') %| isequal(mode,'st_series(Dj)') index=1:200; displ_num(1,index)=-floor(index/2); displ_num(2,index)=ceil(index/2); displ_num(3:4,index)=zeros(2,200); enable_j(handles, 'on') elseif isequal(mode,'series(Di)') %| isequal(mode,'st_series(Di)') % index=1:200; % displ_num(1:2,index)=zeros(2,200); % displ_num(3,index)=-floor(index/2); % displ_num(4,index)=ceil(index/2); enable_i(handles, 'on') if nbfield2 > 1 enable_j(handles, 'on') else enable_j(handles, 'off') end elseif isequal(mode,'displacement')%the pairs have the same indices displ_num(1,1)=0; displ_num(2,1)=0; displ_num(3,1)=0; displ_num(4,1)=0; if nbfield > 1 || nbfield==0 enable_i(handles, 'on') else enable_j(handles, 'off') end if nbfield2 > 1 enable_j(handles, 'on') else enable_j(handles, 'off') end end %set(handles.ListPairCiv1,'UserData',displ_num); errormsg=find_netcpair_civ( handles,1); if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end % find_netcpair_civ2(handles) function enable_i(handles, state) set(handles.itext,'Visible',state) % set(handles.MinIndex_i,'Visible',state) % set(handles.last_i,'Visible',state) % set(handles.incr_i,'Visible',state) set(handles.MaxIndex_i,'Visible',state) set(handles.ref_i,'Visible',state) function enable_j(handles, state) set(handles.jtext,'Visible',state) % set(handles.MinIndex_j,'Visible',state) % set(handles.last_j,'Visible',state) % set(handles.incr_j,'Visible',state) set(handles.MinIndex_j,'Visible',state) set(handles.MaxIndex_j,'Visible',state) set(handles.ref_j,'Visible',state) %hseries=findobj(allchild(0),'Tag','series'); %hhseries=guidata(hseries); %series('enable_j',hhseries,state); %file input with xml reading in uvmat, show the image in phys coordinates %------------------------------------------------------------------------ % --- Executes on selection change in ListPairCiv1. function ListPairCiv1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ %reproduce by default the chosen pair in the checkciv2 menu list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs PairString=list_pair{get(handles.ListPairCiv1,'Value')}; [ind1,ind2]=... find_pair_indices(PairString); hseries=findobj(allchild(0),'Tag','series'); %SeriesData=get(hseries,'UserData'); hhseries=guidata(hseries); set(hhseries.num_first_j,'String',num2str(ind1)); set(hhseries.num_last_j,'String',num2str(ind2)); set(hhseries.num_incr_j,'String',num2str(ind2-ind1)); % displ_num=get(handles.ListPairCiv1,'UserData'); % list_pair2=get(handles.ListPairCiv2,'String');%get the menu of image pairs % if index_pair<=length(list_pair2) % set(handles.ListPairCiv2,'Value',index_pair); % end %update MinIndex_i and last_i according to the chosen image pairs % mode_list=get(handles.ListPairMode,'String'); % mode_value=get(handles.ListPairMode,'Value'); % mode=mode_list{mode_value}; % if isequal(mode,'series(Di)') % MinIndex_i=str2double(get(handles.MinIndex_i,'String')); % last_i=str2double(get(handles.last_i,'String')); % incr_i=str2double(get(handles.incr_i,'String')); % num_i=MinIndex_i:incr_i:last_i; % lastfield=str2double(get(handles.MaxIndex_i,'String')); % if ~isnan(lastfield) % test_find=(num_i-floor(index_pair/2)*ones(size(num_i))>0)& ... % (num_i+ceil(index_pair/2)*ones(size(num_i))<=lastfield); % num_i=num_i(test_find); % end % set(handles.MinIndex_i,'String',num2str(num_i(1))); % set(handles.last_i,'String',num2str(num_i(end))); % elseif isequal(mode,'series(Dj)') % MinIndex_j=str2double(get(handles.MinIndex_j,'String')); % last_j=str2double(get(handles.last_j,'String')); % incr_j=str2double(get(handles.incr_j,'String')); % num_j=MinIndex_j:incr_j:last_j; % lastfield2=str2double(get(handles.MaxIndex_j,'String')); % if ~isnan(lastfield2) % test_find=(num_j-floor(index_pair/2)*ones(size(num_j))>0)& ... % (num_j+ceil(index_pair/2)*ones(size(num_j))<=lastfield2); % num_j=num_j(test_find); % end % set(handles.MinIndex_j,'String',num2str(num_j(1))); % set(handles.last_j,'String',num2str(num_j(end))); % end %------------------------------------------------------------------------ % --- Executes on selection change in ListPairCiv2. function ListPairCiv2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ index_pair=get(handles.ListPairCiv2,'Value');%get the selected position index in the menu %update MinIndex_i and last_i according to the chosen image pairs mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; if isequal(mode,'series(Di)') first_i=str2double(get(handles.MinIndex_i,'String')); last_i=str2double(get(handles.last_i,'String')); incr_i=str2double(get(handles.incr_i,'String')); num_i=first_i:incr_i:last_i; lastfield=str2double(get(handles.MaxIndex_i,'String')); if ~isnan(lastfield) test_find=(num_i-floor(index_pair/2)*ones(size(num_i))>0)& ... (num_i+ceil(index_pair/2)*ones(size(num_i))<=lastfield); num_i=num_i(test_find); end set(handles.MinIndex_i,'String',num2str(num_i(1))); set(handles.last_i,'String',num2str(num_i(end))); elseif isequal(mode,'series(Dj)') first_j=str2double(get(handles.MinIndex_j,'String')); last_j=str2double(get(handles.last_j,'String')); incr_j=str2double(get(handles.incr_j,'String')); num_j=first_j:incr_j:last_j; lastfield2=str2double(get(handles.MaxIndex_j,'String')); if ~isnan(lastfield2) test_find=(num_j-floor(index_pair/2)*ones(size(num_j))>0)& ... (num_j+ceil(index_pair/2)*ones(size(num_j))<=lastfield2); num_j=num_j(test_find); end set(handles.MinIndex_j,'String',num2str(num_j(1))); set(handles.last_j,'String',num2str(num_j(end))); end %------------------------------------------------------------------------ function ref_i_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files if isequal(mode,'series(Di)') || ...% we do patch2 only (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) errormsg=find_netcpair_civ( handles,2); end if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end %------------------------------------------------------------------------ function ref_j_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; if isequal(get(handles.CheckCiv1,'Value'),0)|| isequal(mode,'series(Dj)') errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files end if isequal(mode,'series(Dj)') || ... (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) errormsg=find_netcpair_civ(handles,2); end if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end %------------------------------------------------------------------------ % determine the menu for checkciv1 pairs depending on existing netcdf file at the middle of % the field series set by MinIndex_i, incr, last_i % index=1: look for pairs for civ1 % index=2: look for pairs for civ2 function errormsg=find_netcpair_civ(handles,index) %------------------------------------------------------------------------ set(gcf,'Pointer','watch')% set the mouse pointer to 'watch' (clock) %% initialisation errormsg=''; CivInputData=get(handles.civ_input,'UserData'); %browse=get(handles.RootPath,'UserData'); compare_list=get(handles.ListCompareMode,'String'); val=get(handles.ListCompareMode,'Value'); compare=compare_list{val}; if strcmp(compare,'displacement')||strcmp(compare,'shift') mode='displacement'; else mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); if isempty(mode_list) return end mode=mode_list{mode_value}; end nom_type_ima=CivInputData.NomTypeIma; %% determine nom_type_nc, nomenclature type of the .nc files: [nom_type_nc]=nomtype2pair(nom_type_ima,mode); %% reads .nc subdirectoy and image numbers from the interface %SubDirImages=get(handles.Civ1_ImageA,'String'); %TODO: determine %subdir_civ1=[SubDirImages get(handles.Civ1_ImageB,'String')];%subdirectory subdir_civ1 for the netcdf data %subdir_civ2=[SubDirImages get(handles.Civ2_ImageA,'String')];%subdirectory subdir_civ2 for the netcdf data ref_i=str2double(get(handles.ref_i,'String')); ref_j=[]; if isequal(mode,'pair j1-j2')%|isequal(mode,'st_pair j1-j2') ref_j=0; elseif strcmp(get(handles.ref_j,'Visible'),'on') ref_j=str2double(get(handles.ref_j,'String')); end if isempty(ref_j) ref_j=1; end CivInputData=get(handles.civ_input,'UserData'); TimeUnit=get(handles.TimeUnit,'String'); Time=CivInputData.Time; checkframe=strcmp(TimeUnit,'frame'); %% case with no Civ1 operation, netcdf files need to exist for reading displ_pair={''}; nbpair=200;%default select=ones(size(1:nbpair));%flag for displayed pairs =1 for display testpair=0; % RootPath=get(handles.RootPath,'String'); % RootFile=get(handles.Civ2_ImageB,'String'); nbpair=200; %default % if index==1 % case civ1 % if ~get(handles.CheckCiv1,'Value') % % if ~exist(fullfile(RootPath,subdir_civ1),'dir') % errormsg=['no civ1 file available: subdirectory ' subdir_civ1 ' does not exist']; % set(handles.ListPairCiv1,'String',{}); % return % end % for ipair=1:nbpair % filename=fullfile_uvmat(RootPath,subdir_civ1,RootFile,'.nc',nom_type_nc,... % ref_i+displ_num(3,ipair),ref_i+displ_num(4,ipair),ref_j+displ_num(1,ipair),ref_j+displ_num(2,ipair)); % select(ipair)=exist(filename,'file')==2;% put flag to 0 if the file does not exist % end % % case of no displayed pair % if isequal(select,zeros(size(1:nbpair))) % if isfield(browse,'incr_pair') && ~isequal(browse.incr_pair,[0 0]) % num_i1=ref_i-floor(browse.incr_pair(1)/2); % num_i2=ref_i+ceil(browse.incr_pair(1)/2); % num_j1=ref_j-floor(browse.incr_pair(2)/2); % num_j2=ref_j+ceil(browse.incr_pair(2)/2); % filename=fullfile_uvmat(RootPath,subdir_civ1,RootFile,'.nc',nom_type_nc,num_i1,num_i2,num_j1,num_j2); % select(1)=exist(filename,'file')==2; % testpair=1; % else % % if isequal(mode,'series(Dj)')% | isequal(mode,'st_series(Dj)') % % errormsg=['no civ1 file available for the selected reference index j=' num2str(ref_j) ' and subdirectory ' subdir_civ1]; % % else % errormsg=['no civ1 file available for the selected reference indices (i,j)= ' num2str(ref_i) ', ' num2str(ref_j) ' and subdirectory ' subdir_civ1]; % % end % set(handles.ListPairCiv1,'String',{''}); % %COMPLETER CAS STEREO % return % end % end % end % else %case civ2 alone % if ~get(handles.CheckCiv2,'Value') && ~get(handles.CheckCiv1,'Value') && ~get(handles.CheckFix1,'Value') && ~get(handles.CheckPatch1,'Value') % if ~exist(fullfile(RootPath,subdir_civ2),'dir') % msgbox_uvmat('ERROR',['no civ2 file available: subdirectory ' subdir_civ2 ' does not exist']) % set(handles.ListPairCiv2,'Value',1); % set(handles.ListPairCiv2,'String',{''}); % return % end % for ipair=1:nbpair % filename=fullfile_uvmat(RootPath,subdir_civ1,RootFile,'.nc',nom_type_nc,... % ref_i+displ_num(3,ipair),ref_i+displ_num(4,ipair),ref_j+displ_num(1,ipair),ref_j+displ_num(2,ipair)); % select(ipair)=exist(filename,'file')==2; % end % if isequal(select,zeros(size(1:nbpair))) % if isfield(browse,'incr_pair') % num_i1=ref_i-floor(browse.incr_pair(1)/2); % num_i2=ref_i+floor((browse.incr_pair(1)+1)/2); % num_j1=ref_j-floor(browse.incr_pair(2)/2); % num_j2=ref_j+floor((browse.incr_pair(2)+1)/2); % filename=fullfile_uvmat(RootPath,subdir_civ2,RootFile,'.nc',nom_type_nc,num_i1,num_i2,num_j1,num_j2); % select(1)=exist(filename,'file')==2; % else % if isequal(mode,'series(Dj)')% | isequal(mode,'st_series(Dj)') % errormsg=['no civ2 file available for the selected reference index j=' num2str(ref_j) ' and subdirectory ' subdir_civ2]; % else % errormsg=['no civ2 file available for the selected reference index i=' num2str(ref_i) ' and subdirectory ' subdir_civ2]; % end % set(handles.ListPairCiv2,'Value',1); % set(handles.ListPairCiv2,'String',{''}); % return % end % end % end % end %% determine the menu display in .ListPairCiv1 testpair=0; %TODO: check if isequal(mode,'series(Di)') if testpair displ_pair{1}=['Di= ' num2str(-floor(browse.incr_pair(1)/2)) '|' num2str(ceil(browse.incr_pair(1)/2))]; else for ipair=1:nbpair if select(ipair) displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; if ~checkframe if size(Time,1)>=ref_i+1+ceil(ipair/2) && size(Time,2)>=ref_j+1&& ref_i-floor(ipair/2)>=0 && ref_j>=0 dt=Time(ref_i+1+ceil(ipair/2),ref_j+1)-Time(ref_i+1-floor(ipair/2),ref_j+1);%Time interval dtref_j+1 displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; end else dt=ipair/1000; displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(ipair)]; end else displ_pair{ipair}='...'; %pair not displayed in the menu end end end elseif isequal(mode,'series(Dj)') if testpair displ_pair{1}=['Dj= ' num2str(-floor(browse.incr_pair(1)/2)) '|' num2str(ceil(browse.incr_pair(1)/2))]; else for ipair=1:nbpair if select(ipair) displ_pair{ipair}=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; if ~checkframe if size(Time,2)>=ref_j+1+ceil(ipair/2) && size(Time,1)>=ref_i+1 && ref_j-floor(ipair/2)>=0 && ref_i>=0 dt=Time(ref_i+1,ref_j+1+ceil(ipair/2))-Time(ref_i+1,ref_j+1-floor(ipair/2));%Time interval dtref_j+1 displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; end else dt=ipair/1000; displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; end else displ_pair{ipair}='...'; %pair not displayed in the menu end end end elseif isequal(mode,'pair j1-j2')%case of pairs MinIndex_j=CivInputData.MinIndex_j; MaxIndex_j=min(CivInputData.MaxIndex_j,10);%limitate the number of pairs to 10x10 index_pair=0; %get all the Time intervals in bursts for numod_a=MinIndex_j:MaxIndex_j-1 %nbfield2 always >=2 for 'pair j1-j2' mode for numod_b=(numod_a+1):MaxIndex_j index_pair=index_pair+1; displ_pair{index_pair}=['j= ' num2stra(numod_a,nom_type_ima) '-' num2stra(numod_b,nom_type_ima)]; dt(index_pair)=numod_b-numod_a;%default dt if size(Time,1)>ref_i && size(Time,2)>numod_b % && ~checkframe dt(index_pair)=Time(ref_i+1,numod_b+1)-Time(ref_i+1,numod_a+1);% Time interval dt displ_pair{index_pair}=[displ_pair{index_pair} ' :dt= ' num2str(dt(index_pair)*1000)]; end end end [dtsort,indsort]=sort(dt); displ_pair=displ_pair(indsort); elseif isequal(mode,'displacement') displ_pair={'Di=Dj=0'}; end if index==1 set(handles.ListPairCiv1,'String',displ_pair'); end %% determine the default selection in the pair menu ichoice=find(select,1);% index of selected pair if (isempty(ichoice) || ichoice < 1); ichoice=1; end; initial=get(handles.ListPairCiv1,'Value');%initial choice of pair if initial>nbpair || (numel(select)>=initial && ~isequal(select(initial),1)) set(handles.ListPairCiv1,'Value',ichoice);% first valid pair proposed by default in the menu end initial=get(handles.ListPairCiv2,'Value'); if initial>length(displ_pair')%|~isequal(select(initial),1) if ichoice <= length(displ_pair') set(handles.ListPairCiv2,'Value',ichoice);% same pair proposed by default for civ2 else set(handles.ListPairCiv2,'Value',1);% same pair proposed by default for civ2 end end set(handles.ListPairCiv2,'String',displ_pair'); set(gcf,'Pointer','arrow') % %------------------------------------------------------------------------ % % call 'view_field.fig' to display the field selected in the list of 'status' % function open_view_field(hObject, eventdata) % %------------------------------------------------------------------------ % list=get(hObject,'String'); % index=get(hObject,'Value'); % rootroot=get(hObject,'UserData'); % filename=list{index}; % ind_dot=strfind(filename,'...'); % filename=filename(1:ind_dot-1); % filename=fullfile(rootroot,filename); % delete(get(hObject,'parent'))%delete the display figure to stop the check process % if exist(filename,'file')%visualise the vel field if it exists % uvmat(filename) % set(gcbo,'Value',1) % end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Reference Indices %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ function MinIndex_i_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ first_i=str2double(get(handles.MinIndex_i,'String')); set(handles.ref_i,'String', num2str(first_i))% reference index for pair dt = first index ref_i_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) %------------------------------------------------------------------------ function MinIndex_j_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ first_j=str2num(get(handles.MinIndex_j,'String')); set(handles.ref_j,'String', num2str(first_j))% reference index for pair dt = first index ref_j_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Civ1 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in SearchRange: determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 function SearchRange_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ %determine pair numbers if strcmp(get(handles.num_UMin,'Visible'),'off') set(handles.u_title,'Visible','on') set(handles.v_title,'Visible','on') set(handles.num_UMin,'Visible','on') set(handles.num_UMax,'Visible','on') set(handles.num_VMin,'Visible','on') set(handles.num_VMax,'Visible','on') set(handles.CoordUnit,'Visible','on') set(handles.TimeUnit,'Visible','on') set(handles.slash_title,'Visible','on') set(handles.min_title,'Visible','on') set(handles.max_title,'Visible','on') set(handles.unit_title,'Visible','on') else get_search_range(hObject, eventdata, handles) end %------------------------------------------------------------------------ % --- determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 and shift function get_search_range(hObject, eventdata, handles) %------------------------------------------------------------------------ param_civ1=read_GUI(handles.Civ1); umin=param_civ1.UMin; umax=param_civ1.UMax; vmin=param_civ1.VMin; vmax=param_civ1.VMax; %switch min_title and max_title in case of error if umax<=umin umin_old=umin; umin=umax; umax=umin_old; set(handles.num_UMin,'String', num2str(umin)) set(handles.num_UMax,'String', num2str(umax)) end if vmax<=vmin vmin_old=vmin; vmin=vmax; vmax=vmin_old; set(handles.num_VMin,'String', num2str(vmin)) set(handles.num_VMax,'String', num2str(vmax)) end if ~(isempty(umin)||isempty(umax)||isempty(vmin)||isempty(vmax)) list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs index=get(handles.ListPairCiv1,'Value'); pair_string=list_pair{index}; time=get(handles.ImaDoc,'UserData'); %get the set of times pxcm=get(handles.SearchRange,'UserData'); mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; if isequal (mode, 'series(Di)' ) ref_i=str2double(get(handles.ref_i,'String')); num1=ref_i-floor(index/2);% first image numbers num2=ref_i+ceil(index/2); num_a=1; num_b=1; elseif isequal (mode, 'series(Dj)') num1=1; num2=1; ref_j=str2double(get(handles.ref_j,'String')); num_a=ref_j-floor(index/2);% first image numbers num_b=ref_j+ceil(index/2); elseif isequal(mode,'pair j1-j2') %case of bursts (png_old or png_2D) ref_i=str2double(get(handles.ref_i,'String')); num1=ref_i; num2=ref_i; r=regexp(pair_string,'(?(Di=)|(Dj=)) -*(?\d+)\|(?\d+)','names'); if isempty(r) r=regexp(pair_string,'(?\d+)(?-)(?\d+)','names'); end num_a=str2num(r.num1); num_b=str2num(r.num2); end dt=time(num2+1,num_b+1)-time(num1+1,num_a+1); ibx=str2double(get(handles.num_CorrBoxSize_1,'String')); iby=str2double(get(handles.num_CorrBoxSize_2,'String')); umin=dt*pxcm*umin; umax=dt*pxcm*umax; vmin=dt*pxcm*vmin; vmax=dt*pxcm*vmax; shiftx=round((umin+umax)/2); shifty=round((vmin+vmax)/2); isx=(umax+2-shiftx)*2+param_civ1.Bx; isx=2*ceil(isx/2)+1; isy=(vmax+2-shifty)*2+param_civ1.Bx; isy=2*ceil(isy/2)+1; set(handles.num_SearchBoxShift_1,'String',num2str(shiftx)); set(handles.num_SearchBoxShift_2,'String',num2str(shifty)); set(handles.num_SearchBoxSize_1,'String',num2str(isx)); set(handles.num_SearchBoxSize_2,'String',num2str(isy)); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Fix1 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in CheckMask. function get_mask_fix1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ maskval=get(handles.CheckMask,'Value'); if isequal(maskval,0) set(handles.Mask,'String','') else mask_displ='no mask'; %default filebase=get(handles.RootPath,'String'); [nbslice, flag_mask]=get_mask(filebase,handles); if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.RootFile_1,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') [FileName, PathName, filterindex] = uigetfile( ... {'*.png', ' (*.png)'; '*.png', '.png files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a mask file *.png',filebase); mask_displ=fullfile(PathName,FileName); if ~exist(mask_displ,'file') mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.CheckMask,'Value',0) set(handles.CheckMask,'Value',0) set(handles.CheckMask,'Value',0) else %set(handles.CheckMask,'Value',1) set(handles.CheckMask,'Value',1) end set(handles.Mask,'String',mask_displ) set(handles.Mask,'String',mask_displ) set(handles.Mask,'String',mask_displ) end %------------------------------------------------------------------------ % --- Executes on button press in CheckMask: select box for mask option function get_mask_civ2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ maskval=get(handles.CheckMask,'Value'); if isequal(maskval,0) set(handles.Mask,'String','') else mask_displ='no mask'; %default filebase=get(handles.RootPath,'String'); [nbslice, flag_mask]=get_mask(filebase,handles); if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.RootFile_1,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') [FileName, PathName, filterindex] = uigetfile( ... {'*.png', ' (*.png)'; '*.png', '.png files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a mask file *.png',filebase); mask_displ=fullfile(PathName,FileName); if ~exist(mask_displ,'file') mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.CheckMask,'Value',0) set(handles.CheckMask,'Value',0) else set(handles.CheckMask,'Value',1) end set(handles.Mask,'String',mask_displ) set(handles.Mask,'String',mask_displ) end %------------------------------------------------------------------------ % --- Executes on button press in CheckMask. function get_mask_fix2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ maskval=get(handles.CheckMask,'Value'); if isequal(maskval,0) set(handles.Mask,'String','') else mask_displ='no mask'; %default filebase=get(handles.RootPath,'String'); [nbslice, flag_mask]=get_mask(filebase,handles); if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.RootFile_1,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') [FileName, PathName, filterindex] = uigetfile( ... {'*.png', ' (*.png)'; '*.png', '.png files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a mask file *.png',filebase); mask_displ=fullfile(PathName,FileName); if ~exist(mask_displ,'file') mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.CheckMask,'Value',0) end set(handles.Mask,'String',mask_displ) end %------------------------------------------------------------------------ % --- function called to look for mask files function [nbslice, flag_mask]=get_mask(filebase,handles) %------------------------------------------------------------------------ %detect mask files, images with appropriate file base %[filebase '_' xx 'mask'], xx=nbslice %flag_mask=1 indicates detection flag_mask=0;%default nbslice=1; % subdir=get(handles.Civ1_ImageB,'String'); [Path,Name]=fileparts(filebase); if ~isdir(Path) msgbox_uvmat('ERROR','no path for input files') return end % currentdir=pwd; % cd(Path);%move in the dir of the root name filebase maskfiles=dir(fullfile(Path,[Name '_*mask_*.png']));%look for mask files % cd(currentdir);%come back to the current working directory if ~isempty(maskfiles) % msgbox_uvmat('ERROR','no mask available, to create it use Tools/Make mask in the upper menu bar of uvmat') % else flag_mask=1; maskname=maskfiles(1).name;% take the first mask file in the list [Path2,Name,ext]=fileparts(maskname); Namedouble=double(Name); val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters ind_mask=findstr('mask',Name); i=ind_mask-1; while val(i)==0 && i>0 i=i-1; end nbslice=str2double(Name(i+1:ind_mask-1)); if ~isnan(nbslice) && Name(i)=='_' flag_mask=1; else msgbox_uvmat('ERROR',['bad mask file ' Name ext ' found in ' Path2]) return nbslice=1; end end %------------------------------------------------------------------------ % --- function called to look for grid files function [nbslice, flag_grid]=get_grid(filebase,handles) %------------------------------------------------------------------------ flag_grid=0;%default nbslice=1; [Path,Name]=fileparts(filebase); currentdir=pwd; cd(Path);%move in the dir of the root name filebase gridfiles=dir([Name '_*grid_*.grid']);%look for grid files cd(currentdir);%come back to the current working directory if ~isempty(gridfiles) flag_grid=1; gridname=gridfiles(1).name;% take the first grid file in the list [Path2,Name,ext]=fileparts(gridname); Namedouble=double(Name); val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters ind_grid=findstr('grid',Name); i=ind_grid-1; while val(i)==0 && i>0 i=i-1; end nbslice=str2double(Name(i+1:ind_grid-1)); if ~isnan(nbslice) && Name(i)=='_' flag_grid=1; else msgbox_uvmat('ERROR',['bad grid file ' Name ext ' found in ' Path2]) return nbslice=1; end end %------------------------------------------------------------------------ % --- transform numbers to letters function str=num2stra(num,nom_type) %------------------------------------------------------------------------ if isempty(nom_type) str=''; elseif strcmp(nom_type(end),'a') str=char(96+num); elseif strcmp(nom_type(end),'A') str=char(96+num); elseif isempty(nom_type(2:end))%a single index str=''; else str=num2str(num); end % %------------------------------------------------------------------------ % % --- Executes on button press in ListSubdirCiv1. % function ListSubdirCiv1_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % list_subdir_civ1=get(handles.ListSubdirCiv1,'String'); % val=get(handles.ListSubdirCiv1,'Value'); % SubDir=list_subdir_civ1{val}; % if strcmp(SubDir,'new...') % if get(handles.CheckCiv1,'Value') % SubDir='CIV_INPUT'; %default subdirectory % else % msgbox_uvmat('ERROR','select CheckCiv1 to perform a new civ_input operation') % return % end % end % set(handles.Civ1_ImageB,'String',SubDir); % errormsg=find_netcpair_civ(handles,1); % if ~isempty(errormsg) % msgbox_uvmat('ERROR',errormsg) % end % %------------------------------------------------------------------------ % % --- Executes on button press in ListSubdirCiv2. % function ListSubdirCiv2_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % list_subdir_civ2=get(handles.ListSubdirCiv2,'String'); % val=get(handles.ListSubdirCiv2,'Value'); % SubDir=list_subdir_civ2{val}; % if strcmp(SubDir,'new...') % if get(handles.CheckCiv2,'Value') % SubDir='CIV_INPUT'; %default subdirectory % else % msgbox_uvmat('ERROR','select CheckCiv2 to perform a new civ_input operation') % return % end % end % set(handles.Civ2_ImageA,'String',SubDir); %------------------------------------------------------------------------ % --- Executes on button press in CheckGrid. function CheckGrid_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ value=get(hObject,'Value'); hparent=get(hObject,'parent');%handles of the parent panel hchildren=get(hparent,'children'); handle_txtbox=findobj(hchildren,'tag','Grid');% look for the grid name box in the same panel handle_dx=findobj(hchildren,'tag','num_Dx'); handle_dy=findobj(hchildren,'tag','num_Dy'); handle_title_dx=findobj(hchildren,'tag','title_Dx'); handle_title_dy=findobj(hchildren,'tag','title_Dy'); testgrid=0; filegrid=''; if value filebase=get(handles.RootPath,'String'); [nbslice, flag_grid]=get_grid(filebase,handles);% look for a grid with appropriate name if isequal(flag_grid,1) filegrid=[num2str(nbslice) 'grid']; testgrid=1; else % browse for a grid filegrid=get(hObject,'UserData');%look for previous grid name stored as UserData if exist(filegrid,'file') filebase=filegrid; end [FileName, PathName] = uigetfile( ... {'*.grid', ' (*.grid)'; '*.grid', '.grid files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); filegrid=fullfile(PathName,FileName); set(hObject,'UserData',filegrid);%store for future use if ~(isempty(FileName)||isempty(PathName)||isequal(FileName,0)||~exist(filegrid,'file')) testgrid=1; end end end if testgrid set(handle_dx,'Visible','off'); set(handle_dy,'Visible','off'); set(handle_title_dy,'Visible','off'); set(handle_title_dx,'Visible','off'); set(handle_txtbox,'Visible','on') set(handle_txtbox,'String',filegrid) else set(hObject,'Value',0); set(handle_dx,'Visible','on'); set(handle_dy,'Visible','on'); set(handle_title_dy,'Visible','on'); set(handle_title_dx,'Visible','on'); set(handle_txtbox,'Visible','off') end %% if hObject is on the checkciv1 frame, duplicate action for checkciv2 frame PanelName=get(hparent,'tag'); if strcmp(PanelName,'Civ1') hchildren=get(handles.Civ2,'children'); handle_checkbox=findobj(hchildren,'tag','CheckGrid'); handle_txtbox=findobj(hchildren,'tag','Grid'); handle_dx=findobj(hchildren,'tag','num_Dx'); handle_dy=findobj(hchildren,'tag','num_Dy'); handle_title_dx=findobj(hchildren,'tag','title_Dx'); handle_title_dy=findobj(hchildren,'tag','title_Dy'); set(handle_checkbox,'UserData',filegrid);%store for future use if testgrid set(handle_checkbox,'Value',1); set(handle_dx,'Visible','off'); set(handle_dy,'Visible','off'); set(handle_title_dx,'Visible','off'); set(handle_title_dy,'Visible','off'); set(handle_txtbox,'Visible','on') set(handle_txtbox,'String',filegrid) end end %------------------------------------------------------------------------ % --- Executes on button press in CheckMask: common to all panels (civ1, Civ2..) function CheckMask_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ value=get(hObject,'Value'); hparent=get(hObject,'parent'); parent_tag=get(hparent,'Tag'); hchildren=get(hparent,'children'); handle_txtbox=findobj(hchildren,'tag','Mask');% look for the mask name box in the same panel testmask=0; if value filebase=get(handles.RootPath,'String'); [nbslice, flag_mask]=get_mask(filebase,handles);% look for a mask with appropriate name if isequal(flag_mask,1) filemask=[num2str(nbslice) 'mask']; testmask=1; else % browse for a mask filemask=get(hObject,'UserData');%look for previous mask name stored as UserData if exist(filemask,'file') filebase=filemask; end [FileName, PathName] = uigetfile( ... {'*.png', ' (*.png)'; '*.png', '.png files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a mask file *.png',filebase); filemask=fullfile(PathName,FileName); set(hObject,'UserData',filemask);%store for future use if ~(isempty(FileName)||isempty(PathName)||isequal(FileName,0)||~exist(filemask,'file')) testmask=1; end end end if testmask if strcmp(parent_tag,'Civ1') set(handles.Mask,'Visible','on') set(handles.Mask,'String',filemask) set(handles.CheckMask,'Value',1) end else set(hObject,'Value',0); set(handle_txtbox,'Visible','off') end %------------------------------------------------------------------------ % --- Executes on button press in get_gridpatch1. function get_gridpatch1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ filebase=get(handles.RootPath,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.grid', ' (*.grid)'; '*.grid', '.grid files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); filegrid=fullfile(PathName,FileName); set(handles.grid_patch1,'string',filegrid); %------------------------------------------------------------------------ % --- Executes on button press in get_gridpatch2. function get_gridpatch2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ %------------------------------------------------------------------------ % --- STEREO Interp function cmd=RUN_STINTERP(stinterpBin,filename_A_nc,filename_B_nc,filename_nc,nx_patch,ny_patch,rho_patch,subdomain_patch,thresh_value,xmlA,xmlB) %------------------------------------------------------------------------ namelog=[filename_nc(1:end-3) '_stinterp.log']; cmd=[stinterpBin ' -f1 ' filename_A_nc ' -f2 ' filename_B_nc ' -f ' filename_nc ... ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ' -nopt ' subdomain_patch ' -c1 ' xmlA ' -c2 ' xmlB ' -xy x -Nfy 1024 > ' namelog ' 2>&1']; % redirect standard output to the log file % %------------------------------------------------------------------------ % %--read images and convert them to the uint16 format used for PIV % function A=read_image(filename,type_ima,num,movieobject) % %------------------------------------------------------------------------ % %num is the view number needed for an avi movie % switch type_ima % case 'movie' % A=read(movieobject,num); % case 'avi' % mov=aviread(filename,num); % A=frame2im(mov(1)); % case 'multimage' % A=imread(filename,num); % case 'image' % A=imread(filename); % end % siz=size(A); % if length(siz)==3;%color images % A=sum(double(A),3); % A=uint16(A); % end %------------------------------------------------------------------------ % --- Executes on button press in get_ref_fix1. function get_ref_fix1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ filebase=get(handles.RootPath,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.nc', ' (*.nc)'; '*.nc', 'netcdf files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); fileinput=[PathName FileName]; sizf=size(fileinput); if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); ref.filebase=fullfile(Path,File); % ref.num_a=stra2num(str_a); % ref.num_b=stra2num(str_b); % ref.num1=str2double(field_count); % ref.num2=str2double(str2); browse=[];%initialisation if ~isequal(ref.ext,'.nc') msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') return end set(handles.ref_fix1,'String',[fullfile(ref.subdir,File) '....nc']); set(handles.ref_fix1,'UserData',ref) menu_field{1}='civ1'; Data=nc2struct(fileinput,[]); if isfield(Data,'patch') && isequal(Data.patch,1) menu_field{2}='filter1'; end if isfield(Data,'civ2') && isequal(Data.civ2,1) menu_field{3}='civ2'; end if isfield(Data,'patch2') && isequal(Data.patch2,1) menu_field{4}='filter2'; end set(handles.field_ref1,'String',menu_field); set(handles.field_ref1,'Value',length(menu_field)); set(handles.num_MinVel,'Value',2); set(handles.num_MinVel,'String','1');%default threshold set(handles.ref_fix1,'Enable','on') %------------------------------------------------------------------------ % --- Executes on button press in get_ref_fix2. function get_ref_fix2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ if isequal(get(handles.get_ref_fix2,'Value'),1) filebase=get(handles.RootPath,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.nc', ' (*.nc)'; '*.nc', 'netcdf files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); fileinput=[PathName FileName]; sizf=size(fileinput); if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); ref.filebase=fullfile(Path,File); % ref.num_a=stra2num(str_a); % ref.num_b=stra2num(str_b); % ref.num1=str2num(field_count); % ref.num2=str2num(str2); browse=[];%initialisation if ~isequal(ref.ext,'.nc') msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') return end set(handles.ref_fix2,'String',[fullfile(ref.subdir,File) '....nc']); set(handles.ref_fix2,'UserData',ref) menu_field{1}='civ1'; Data=nc2struct(fileinput,[]); if isfield(Data,'patch') && isequal(Data.patch,1) menu_field{2}='filter1'; end if isfield(Data,'civ2') && isequal(Data.civ2,1) menu_field{3}='civ2'; end if isfield(Data,'patch2') && isequal(Data.patch2,1) menu_field{4}='filter2'; end set(handles.field_ref2,'String',menu_field); set(handles.field_ref2,'Value',length(menu_field)); set(handles.num_MinVel,'Value',2); set(handles.num_MinVel,'String','1');%default threshold set(handles.ref_fix2,'Enable','on') set(handles.ref_fix2,'Visible','on') set(handles.field_ref2,'Visible','on') else set(handles.ref_fix2,'Visible','off') set(handles.field_ref2,'Visible','off') end %------------------------------------------------------------------------ function ref_fix1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ set(handles.num_MinVel,'Value',1); set(handles.field_ref1,'Value',1) set(handles.field_ref1,'String',{' '}) set(handles.ref_fix1,'UserData',[]); set(handles.ref_fix1,'String',''); set(handles.thresh_vel1,'String','0'); %------------------------------------------------------------------------ function ref_fix2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ set(handles.num_MinVel,'Value',1); set(handles.field_ref2,'Value',1) set(handles.field_ref2,'String',{' '}) set(handles.ref_fix2,'UserData',[]); set(handles.ref_fix2,'String',''); set(handles.num_MinVel,'String','0'); %------------------------------------------------------------------------ % --- TO ABANDON Executes on button press in test_stereo1. function CheckStereo_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ hparent=get(hObject,'parent'); parent_tag=get(hparent,'Tag'); hchildren=get(hparent,'children'); handle_txtbox=findobj(hchildren,'tag','txt_Mask'); if isequal(get(hObject,'Value'),0) set(handles.num_SubDomainSize,'Visible','on') set(handles.num_FieldSmooth,'Visible','on') else set(handles.num_SubDomainSize,'Visible','off') set(handles.num_FieldSmooth,'Visible','off') end % %------------------------------------------------------------------------ % % --- Executes on button press in CheckStereo. % function StereoCheck_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % if isequal(get(handles.CheckStereo,'Value'),0) % set(handles.num_subdomainsize,'Visible','on') % set(handles.num_FieldSmooth,'Visible','on') % else % set(handles.num_subdomainsize,'Visible','off') % set(handles.num_FieldSmooth,'Visible','off') % end %------------------------------------------------------------------------ % --- Executes on button press in TestCiv1: prepare the image correlation function % activated by mouse motion function TestCiv1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ drawnow if get(handles.TestCiv1,'Value') set(handles.TestCiv1,'BackgroundColor',[0.7 0.7 0.7])% paint TestCiv1 button to grey to confirm civ launch ref_i=str2double(get(handles.ref_i,'String'));% read reference i index if strcmp(get(handles.ref_j,'Visible'),'on') ref_j=str2double(get(handles.ref_j,'String'));% read reference j index if relevant else ref_j=1;%default j index end [filecell,i1,i2]=set_civ_filenames(handles,ref_i,ref_j,[1 0 0 0 0 0]);% get the corresponding file name and indices Data.ListVarName={'ny','nx','A'}; Data.VarDimName= {'ny','nx',{'ny','nx'}}; Data.A=imread(filecell.ima1.civ1{1}); % read the first image if ndims(Data.A)==3 %case of color image Data.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; end Data.ny=[size(Data.A,1) 1]; Data.nx=[1 size(Data.A,2)]; Data.CoordUnit='pixel';% used to set equal scaling for x and y in image dispaly par_civ1=read_GUI(handles.Civ1); par_civ1.FileTypeA=get_file_type(filecell.ima1.civ1{1}); par_civ1.ImageWidth=size(Data.A,2); par_civ1.ImageHeight=size(Data.A,1); par_civ1.Mask='all';% will provide only the grid set for PIV, no image correlation par_civ1.FrameIndexA=num2str(i1); par_civ1.FrameIndexB=num2str(i2); Param.Civ1=par_civ1; Grid=civ_matlab(Param);% get the grid of x, y positions set for PIV hview_field=view_field(Data); %view the image in the GUI view_field set(0,'CurrentFigure',hview_field) hhview_field=guihandles(hview_field); set(hview_field,'CurrentAxes',hhview_field.PlotAxes) ViewData=get(hview_field,'UserData'); ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field ViewData.PlotAxes.B=imread(filecell.ima2.civ1{1});%store the second image in the UserData of the GUI view_field ViewData.PlotAxes.X=Grid.Civ1_X; %keep the set of points in memeory ViewData.PlotAxes.Y=Grid.Civ1_Y; set(hview_field,'UserData',ViewData) corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if isempty(corrfig) corrfig=figure; set(corrfig,'tag','corrfig') set(corrfig,'name','image correlation') set(corrfig,'DeleteFcn',{@closeview_field})% end set(handles.TestCiv1,'BackgroundColor',[1 0 0]) else set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if ~isempty(corrfig) delete(corrfig) end hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end end %------------------------------------------------------------------------ %----function introduced for the correlation window figure, activated by deleting this window function closeview_field(gcbo,eventdata) %------------------------------------------------------------------------ hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end %------------------------------------------------------------------------ % --- Executes on button press in CheckThreshold. function CheckThreshold_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ huipanel=get(hObject,'parent'); obj(1)=findobj(huipanel,'Tag','num_MinIma'); obj(2)=findobj(huipanel,'Tag','num_MaxIma'); obj(3)=findobj(huipanel,'Tag','title_Threshold'); if get(hObject,'Value') set(obj,'Visible','on') else set(obj,'Visible','off') end %'nomtype2pair': creates nomencalture for index pairs knowing the image nomenclature %--------------------------------------------------------------------- function NomTypeNc=nomtype2pair(NomTypeIma,mode) %--------------------------------------------------------------------- % OUTPUT: % NomTypeNc %--------------------------------------------------------------------- % INPUT: % 'NomTypeIma': string defining the kind of nomenclature used for images NomTypeNc=NomTypeIma;%default switch mode case 'pair j1-j2' if ~isempty(regexp(NomTypeIma,'a$')) NomTypeNc=[NomTypeIma 'b']; elseif ~isempty(regexp(NomTypeIma,'A$')) NomTypeNc=[NomTypeIma 'B']; else r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); if ~isempty(r) NomTypeNc='_1_1-2'; end end case 'series(Dj)' % r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); % if ~isempty(r) NomTypeNc='_1_1-2'; % end case 'series(Di)' r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); if ~isempty(r) NomTypeNc='_1-2_1'; else NomTypeNc='_1-2'; end end % --- Executes on button press in TestPatch1. function TestPatch1_Callback(hObject, eventdata, handles) set(handles.TestPatch1,'BackgroundColor',[1 1 0]) drawnow if get(handles.TestPatch1,'Value') ref_i=str2double(get(handles.ref_i,'String')); if strcmp(get(handles.ref_j,'Visible'),'on') ref_j=str2double(get(handles.ref_j,'String')); else ref_j=1;%default end filecell=set_civ_filenames(handles,ref_i,ref_j,[0 0 1 0 0 0]); Data.ListVarName={'ny','nx','A'}; Data.VarDimName= {'ny','nx',{'ny','nx'}}; param_patch1=read_GUI(handles.Patch1); param_patch1.CivFile=filecell.nc.civ1{1}; Param.Patch1=param_patch1; for irho=1:7 [Data,errormsg]=civ_matlab(Param);% get the grid of x, y positions set for PIV if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) return end SmoothingParam(irho)=Param.Patch1.FieldSmooth; Data.Civ1_U_Diff=Data.Civ1_U_Diff(Data.Civ1_FF==0); Data.Civ1_V_Diff=Data.Civ1_V_Diff(Data.Civ1_FF==0); DiffVel(irho)=sqrt(mean(Data.Civ1_U_Diff.*Data.Civ1_U_Diff+Data.Civ1_V_Diff.*Data.Civ1_V_Diff)); NbSites(irho,:)=Data.Civ1_NbSites*numel(Data.Civ1_NbSites)/numel(Data.Civ1_U_Diff); Param.Patch1.SmoothingParam=2*Param.Patch1.FieldSmooth; end figure plot(SmoothingParam,DiffVel,'b',SmoothingParam,NbSites,'r') set(handles.TestPatch1,'BackgroundColor',[1 0 0]) else corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if ~isempty(corrfig) delete(corrfig) end hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end end % --- Executes on button press in TestCiv2. function TestCiv2_Callback(hObject, eventdata, handles) function num_OriginIndex_Callback(hObject, eventdata, handles) % hObject handle to num_OriginIndex (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of num_OriginIndex as text % str2double(get(hObject,'String')) returns contents of num_OriginIndex as a double % --- Executes during object creation, after setting all properties. function num_OriginIndex_CreateFcn(hObject, eventdata, handles) % hObject handle to num_OriginIndex (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end %------------------------------------------------------------------------ % --- determine the list of index pairs of processing file function [ind1,ind2]=... find_pair_indices(str_civ,i_series,j_series,MinIndex_i,MaxIndex_i,MinIndex_j,MaxIndex_j) %------------------------------------------------------------------------ % i1_series=i_series;% set of first image indexes % i2_series=i_series; % j1_series=ones(size(i_series));% set of first image numbers % j2_series=ones(size(i_series)); % check_bounds=false(size(i_series)); ind1=''; ind2=''; r=regexp(str_civ,'^\D(?[i|j])=( -| )(?\d+)\|(?\d+)','names'); if ~isempty(r) mode=['D' r.ind]; ind1=stra2num(r.num1); ind2=stra2num(r.num2); else mode='burst'; r=regexp(str_civ,'^j= (?[a-z])-(?[a-z])','names'); if ~isempty(r) NomTypeNc='_1ab'; else r=regexp(str_civ,'^j= (?[A-Z])-(?[A-Z])','names'); if ~isempty(r) NomTypeNc='_1AB'; else r=regexp(str_civ,'^j= (?\d+)-(?\d+)','names'); if ~isempty(r) NomTypeNc='_1_1-2'; end end end if isempty(r) display('wrong pair mode input option') else ind1=stra2num(r.num1); ind2=stra2num(r.num2); end end % if strcmp (mode,'Di') % i1_series=i_series-ind1;% set of first image numbers % i2_series=i_series+ind2; % check_bounds=i1_seriesMaxIndex_i; % if isempty(j_series) % NomTypeNc='_1-2'; % else % j1_series=j_series; % j2_series=j_series; % NomTypeNc='_1-2_1'; % end % elseif strcmp (mode,'Dj') % j1_series=j_series-ind1; % j2_series=j_series+ind2; % check_bounds=j1_seriesMaxIndex_j; % NomTypeNc='_1_1-2'; % else %bursts % j1_series=ind1*ones(size(i_series)); % j2_series=ind2*ones(size(i_series)); % end