%'civ_input': function associated with the GUI 'civ_input.fig' to set the input parameters for civ_series %------------------------------------------------------------------------ % function ParamOut = civ_input(Param) % % OUPUT: % ParamOut: Matlab structure containing the parameters set by the GUI civ_input % % INPUT: % Param: Matlab structure containing the input parameters set by the GUI %======================================================================= % Copyright 2008-2017, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France % http://www.legi.grenoble-inp.fr % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr % % This file is part of the toolbox UVMAT. % % UVMAT is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published % by the Free Software Foundation; either version 2 of the license, % or (at your option) any later version. % % UVMAT is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License (see LICENSE.txt) for more details. %======================================================================= function varargout = civ_input(varargin) gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @civ_input_OpeningFcn, ... 'gui_OutputFcn', @civ_input_OutputFcn, ... 'gui_LayoutFcn', [] , ... 'gui_Callback', []); if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback$','once')) gui_State.gui_Callback = str2func(varargin{1}); end if nargout [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); else gui_mainfcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT %------------------------------------------------------------------------ % --- Executes just before civ_input is made visible. function civ_input_OpeningFcn(hObject, eventdata, handles, Param) %------------------------------------------------------------------------ % This function has no output args, see OutputFcn. %% General settings handles.output = Param; guidata(hObject, handles); % Update handles structure set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) set(hObject,'WindowKeyPressFcn',{@keyboard_callback,handles})%set keyboard action function %set(hObject,'KeyPressFcn',{@KeyPressFcn,handles})%set keyboard action function set(handles.ref_i,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function set(handles.ref_j,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function %set(hObject,'WindowKeyPressFcn',{'keyboard_callback',handles})%set keyboard action function hseries=findobj(allchild(0),'Tag','series');% find the parent GUI 'series' hhseries=guidata(hseries); %handles of the elements in 'series' SeriesData=get(hseries,'UserData');% info stored in the GUI series %% set visibility options depending on the calling function (Param.Action.ActionName): if strcmp(Param.Action.ActionName,'civ_series')||strcmp(Param.Action.ActionName,'stereo_civ') set(handles.num_MaxDiff,'Visible','on') set(handles.num_MaxVel,'Visible','on') set(handles.title_MaxVel,'Visible','on') set(handles.title_MaxDiff,'Visible','on') set(handles.num_Nx,'Visible','off') set(handles.num_Ny,'Visible','off') set(handles.title_Nx,'Visible','off') set(handles.title_Ny,'Visible','off') set(handles.num_CorrSmooth,'Style','popupmenu') set(handles.num_CorrSmooth,'Value',1) set(handles.num_CorrSmooth,'String',{'1';'2'}) set(handles.CheckThreshold,'Visible','on') set(handles.CheckDeformation,'Value',0)% desactivate (work in progress) end switch Param.Action.ActionName case 'stereo_civ' set(handles.ListCompareMode,'Visible','off') set(handles.PairIndices,'Visible','off') case 'civ_series' set(handles.ListCompareMode,'Visible','on') set(handles.PairIndices,'Visible','on') end %% input file info NomTypeInput=Param.InputTable{1,4}; FileType='image';%fdefault FileInfo=[]; if isfield(SeriesData,'FileType')&&isfield(SeriesData,'FileInfo')... &&numel(SeriesData.FileType)>=1&&numel(SeriesData.FileInfo)>=1 FileType=SeriesData.FileType{1};%type of the first input file series FileInfo=SeriesData.FileInfo{1};% info on the first input file series else set(hhseries.REFRESH,'BackgroundColor',[1 0 1])% indicate that the file input in series needs to be refreshed end %% case of netcdf file as input, read the processing stage and look for corresponding images ind_opening=0;%default NomTypeNc=''; NomTypeImaA=NomTypeInput; iview_image=1;%line # for the input images switch FileType case {'image','multimage','video','mmreader','cine_phantom','netcdf'} % NomTypeImaA=NomTypeInput; % iview_image=1;%line # for the input images case 'civdata' if ~strcmp(Param.Action.ActionName,'civ_series') msgbox_uvmat('ERROR','bad input data file: open an image or a nc file from civ_series') return end NomTypeNc=NomTypeInput; ind_opening=FileInfo.CivStage; if isempty(regexp(NomTypeInput,'[ab|AB|-]', 'once')) set(handles.ListCompareMode,'Value',2) %mode displacement advised if the nomencalture does not involve index pairs else set(handles.ListCompareMode,'Value',1) end [Data,tild,tild,errormsg]=nc2struct(FileInfo.FileName,[]); if ~isempty(errormsg) msgbox_uvmat('ERROR',['error in netcdf input file: ' errormsg]) return end if isfield(Data,'.Civ1_ImageA') [PathCiv1_ImageA,Civ1_ImageA,FileExtA]=fileparts(Data.Civ1_ImageA);%look for the source image A [PathCiv1_ImageB,Civ1_ImageB,FileExtA]=fileparts(Data.Civ1_ImageB);%look for the source image B end if isfield(Data,'Civ2_ImageA') [PathCiv2_ImageA,Civ2_ImageA,FileExtA]=fileparts(Data.Civ2_ImageA); [PathCiv2_ImageB,Civ2_ImageB,FileExtA]=fileparts(Data.Civ2_ImageB); end if size(Param.InputTable,1)==1 if isfield(Data,'.Civ1_ImageA') series('display_file_name',hhseries,Data.Civ1_ImageA,'append');%append the image series to the input list [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ1_ImageA); [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ1_ImageB); else series('display_file_name',hhseries,Data.Civ2_ImageA,'append');%append the image series to the input list [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ2_ImageA); [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ2_ImageB); end end iview_image=2;%line # for the input images case 'civxdata'% case of civx data, msgbox_uvmat('ERROR','old civX convention, use the GUI civ') return otherwise msgbox_uvmat('ERROR','civ_series needs images, scalar fields in netcdf format, or civ data as input') return end %% reinitialise menus set(handles.ListPairMode,'Value',1) set(handles.ListPairMode,'String',{''}) set(handles.ListPairCiv1,'Value',1) set(handles.ListPairCiv1,'String',{''}) set(handles.ListPairCiv2,'Value',1) set(handles.ListPairCiv2,'String',{''}) %% prepare the GUI with input parameters % set(handles.ref_i,'String',num2str(Param.IndexRange.first_i)) if isfield(Param.IndexRange,'first_j') set(handles.ref_j,'String',num2str(Param.IndexRange.first_j)) end set(handles.ConfigSource,'String','\default') %% set the menus of image pairs and default selection for civ_input %%%%%%%%%%%%%%%%%%% %% display the min and max indices for the whole file series if isempty(Param.IndexRange.MaxIndex_i)|| isempty(Param.IndexRange.MinIndex_i) msgbox_uvmat('ERROR','REFRESH the input files in the GUI series') return end MaxIndex_i=Param.IndexRange.MaxIndex_i(iview_image); MinIndex_i=Param.IndexRange.MinIndex_i(iview_image); MaxIndex_j=1;%default MinIndex_j=1; if isfield(Param.IndexRange,'MaxIndex_j')&&isfield(Param.IndexRange,'MinIndex_j')... && numel(Param.IndexRange.MaxIndex_j')>=iview_image &&numel(Param.IndexRange.MinIndex_j')>=iview_image MaxIndex_j=Param.IndexRange.MaxIndex_j(iview_image); MinIndex_j=Param.IndexRange.MinIndex_j(iview_image); end %update the bounds if possible if isfield(SeriesData,'i1_series')&&numel(SeriesData.i1_series)>=iview_image if size(SeriesData.i1_series{iview_image},2)==2 && min(min(SeriesData.i1_series{iview_image}(:,1,:)))==0 MinIndex_j=1;% index j set to 1 by default MaxIndex_j=1; MinIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:), 1 )-1;% min ref index i detected in the series (corresponding to the first non-zero value of i1_series, except for zero index) MaxIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:),1,'last' )-1;%max ref index i detected in the series (corresponding to the last non-zero value of i1_series) else ref_i=squeeze(max(SeriesData.i1_series{iview_image}(1,:,:),[],2));% select ref_j index for each ref_i ref_j=squeeze(max(SeriesData.j1_series{iview_image}(1,:,:),[],3));% select ref_i index for each ref_j MinIndex_i=min(find(ref_i))-1; MaxIndex_i=max(find(ref_i))-1; MaxIndex_j=max(find(ref_j))-1; MinIndex_j=min(find(ref_j))-1; end end %% transfer the time from the GUI series, or use file index by default time=[]; TimeUnit='frame'; %default CoordUnit='';%default pxcm_search=1; if isfield(SeriesData,'Time') &&numel(SeriesData.Time')>=1 && ~isempty(SeriesData.Time{1}) time=SeriesData.Time{1}; end if isfield(Param.IndexRange,'TimeUnit')&&~isempty(Param.IndexRange.TimeUnit) TimeUnit=Param.IndexRange.TimeUnit; end % if isfield(SeriesData,'TimeSource') % set(handles.TimeSource,'String',SeriesData.TimeSource) % end if isfield(SeriesData,'GeometryCalib') tsai=SeriesData.GeometryCalib; if isfield(tsai,'fx_fy') pxcm_search=max(tsai.fx_fy(1),tsai.fx_fy(2));%pixels:cm estimated for the search range end if isfield(tsai,'CoordUnit') CoordUnit=tsai.CoordUnit; end end %% timing display %show the reference image edit box if relevant (not needed for movies or in the absence of time information if numel(time)>=2 % if there are at least two time values to define dt if size(time,1)=3 set(handles.CheckCiv3,'Visible','on')% make visible the switch 'iterate/repet' for Civ2. else set(handles.CheckCiv3,'Visible','off') end end %% introduce the stored Civ parameters if available (from previous input or ImportConfig in series) if ~checkrefresh && isfield(Param,'ActionInput')&& strcmp(Param.ActionInput.Program,Param.Action.ActionName)% the program fits with the stored data fill_GUI(Param.ActionInput,hObject);%fill the GUI with the parameters retrieved from the input Param hcheckgrid=findobj(handles.civ_input,'Tag','CheckGrid'); for ilist=1:numel(hcheckgrid) if get(hcheckgrid(ilist),'Value')% if a grid is used, do not show Dx and Dy for an automatic grid hparent=get(hcheckgrid(ilist),'parent');%handles of the parent panel hchildren=get(hparent,'children'); handle_dx=findobj(hchildren,'tag','num_Dx'); handle_dy=findobj(hchildren,'tag','num_Dy'); handle_title_dx=findobj(hchildren,'tag','title_Dx'); handle_title_dy=findobj(hchildren,'tag','title_Dy'); set(handle_dx,'Visible','off'); set(handle_dy,'Visible','off'); set(handle_title_dy,'Visible','off'); set(handle_title_dx,'Visible','off'); end end if isfield(Param.ActionInput,'Civ2') CheckDeformation_Callback(hObject, eventdata, handles) end end %% set the menu and default choice of civ pairs if ~isfield(Param.IndexRange,'first_j')||isequal(MaxIndex_j,MinIndex_j)% no possibility of j pairs set(handles.ListPairMode,'Value',1) set(handles.ListPairMode,'String',{'series(Di)'}) elseif MaxIndex_i==1 && MaxIndex_j>1% simple series in j set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)'}) if MaxIndex_j <= 10 set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large end else set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)';'series(Di)'})%multiple choice if strcmp(NomTypeNc,'_1-2_1') set(handles.ListPairMode,'Value',3)% advise 'series(Di)' elseif MaxIndex_j <= 10 set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large end end %% indicate the min and max indices i and j on the GUI set(handles.MinIndex_i,'String',num2str(MinIndex_i)) set(handles.MaxIndex_i,'String',num2str(MaxIndex_i)) set(handles.MinIndex_j,'String',num2str(MinIndex_j)) set(handles.MaxIndex_j,'String',num2str(MaxIndex_j)) %% set the reference indices from the input file indices if ~(isfield(Param,'ActionInput') && isfield(Param.ActionInput,'ConfigSource')) update_CivOptions(handles,ind_opening)% fill the menu of possible pairs end %% list the possible index pairs, depending on the option set in ListPairMode ListPairMode_Callback([], [], handles) %ListPairCiv1_Callback(hObject, eventdata, handles) %% set the GUI to modal: wait for OK to close set(handles.civ_input,'WindowStyle','modal')% Make the GUI modal drawnow uiwait(handles.civ_input);% wait for OK action to end the function %------------------------------------------------------------------------ % --- Outputs from this function are returned to the command line. function varargout = civ_input_OutputFcn(hObject, eventdata, handles) %------------------------------------------------------------------------ % Get default command line output from handles structure varargout{1}=[];% default output when civ_input is canceled (no 'OK') if ~isempty(handles) varargout{1} = handles.output; delete(handles.civ_input) end % --- Executes when user attempts to close get_field. function civ_input_CloseRequestFcn(hObject, eventdata, handles) if isequal(get(handles.get_field, 'waitstatus'), 'waiting') % The GUI is still in UIWAIT, us UIRESUME uiresume(handles.civ_input); else % The GUI is no longer waiting, just close it delete(handles.civ_input); end %------------------------------------------------------------------------ % --- Executes on button press in SetDefaultParam. %------------------------------------------------------------------------ function SetDefaultParam_Callback(hObject, eventdata, handles) Param.ConfigSource='\default'; %% Civ1 parameters %Param.CheckCiv1=1; Param.Civ1.CorrBoxSize=[25 25]; Param.Civ1.SearchBoxSize=[55 55]; Param.Civ1.SearchBoxShift=[0 0]; Param.Civ1.CorrSmooth=1; Param.Civ1.Dx=20; Param.Civ1.Dy=20; Param.Civ1.CheckGrid=0; Param.Civ1.CheckMask=0; Param.Civ1.Mask=''; Param.Civ1.CheckThreshold=0; Param.Civ1.TestCiv1=0; %% Fix1 parameters %Param.CheckFix1=1; Param.Fix1.CheckFmin2=1; Param.Fix1.CheckF3=1; Param.Fix1.MinCorr=0.2000; %% Patch1 parameters %Param.CheckPatch1=1; Param.Patch1.FieldSmooth=10; Param.Patch1.MaxDiff=1.5000; Param.Patch1.SubDomainSize=1000; Param.Patch1.TestPatch1=0; %% Civ2 parameters %Param.CheckCiv2=1; Param.Civ2.CorrBoxSize=[21 21]; Param.Civ2.SearchBoxSize=[27 27]; Param.Civ2.CorrSmooth=1; Param.Civ2.Dx=10; Param.Civ2.Dy=10; Param.Civ2.CheckGrid=0; Param.Civ2.CheckMask=0; Param.Civ2.Mask=''; Param.Civ2.CheckThreshold=0; Param.Civ2.TestCiv2=0; %% Fix2 parameters %Param.CheckFix2=1; Param.Fix2.CheckFmin2=1; Param.Fix2.CheckF4=1; Param.Fix2.CheckF3=1; Param.Fix2.MinCorr=0.2000; %% Patch2 parameters %Param.CheckPatch2=1; Param.Patch2.FieldSmooth=2; Param.Patch2.MaxDiff=1.5000; Param.Patch2.SubDomainSize=1000; Param.Patch2.TestPatch2=0; fill_GUI(Param,handles.civ_input)% fill the elements of the GUI series with the input parameters update_CivOptions(handles,0) % ----------------------------------------------------------------------- % ----------------------------------------------------------------------- % --- Open the help html file function MenuHelp_Callback(hObject, eventdata, handles) % ----------------------------------------------------------------------- web('http://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/wiki/UvmatHelp#Civ') %------------------------------------------------------------------------ % --- Executes on carriage return on the subdir checkciv1 edit window function Civ1_ImageB_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ SubDir=get(handles.Civ1_ImageB,'String'); menu_str=get(handles.ListSubdirCiv1,'String');% read the list of subdirectories for update ichoice=find(strcmp(SubDir,menu_str),1); if isempty(ichoice) ilist=numel(menu_str); %select 'new...' in the menu else ilist=ichoice; end set(handles.ListSubdirCiv1,'Value',ilist)% select the selected subdir in the menu if get(handles.CheckCiv1,'Value')% if Civ1 is performed set(handles.Civ2_ImageA,'String',SubDir);% set by default civ2 directory the same as civ1 % set(handles.ListSubdirCiv2,'Value',ilist) else % if Civ1 data already exist errormsg=find_netcpair_civ(handles,1); %update the list of available index pairs in the new directory if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end end %------------------------------------------------------------------------ % --- Executes on carriage return on the SubDir checkciv1 edit window function Civ2_ImageA_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ SubDir=get(handles.Civ1_ImageB,'String'); menu_str=get(handles.ListSubdirCiv2,'String');% read the list of subdirectories for update ichoice=find(strcmp(SubDir,menu_str),1); if isempty(ichoice) ilist=numel(menu_str); %select 'new...' in the menu else ilist=ichoice; end set(handles.ListSubdirCiv2,'Value',ilist)% select the selected subdir in the menu %update the list of available pairs from netcdf files in the new directory if ~get(handles.CheckCiv2,'Value') && ~get(handles.CheckCiv1,'Value') && ~get(handles.CheckFix1,'Value') && ~get(handles.CheckPatch1,'Value') errormsg=find_netcpair_civ(handles,2); if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end end %------------------------------------------------------------------------ % --- Executes on button press in CheckCiv1. function CheckCiv1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ update_CivOptions(handles,0) %------------------------------------------------------------------------ % --- Executes on button press in CheckFix1. function CheckFix1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ update_CivOptions(handles,0) %------------------------------------------------------------------------ % --- Executes on button press in CheckPatch1. function CheckPatch1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ update_CivOptions(handles,0) %------------------------------------------------------------------------ % --- Executes on button press in CheckCiv2. function CheckCiv2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ update_CivOptions(handles,0) %------------------------------------------------------------------------ % --- Executes on button press in CheckFix2. function CheckFix2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ update_CivOptions(handles,0) %------------------------------------------------------------------------ % --- Executes on button press in CheckPatch2. function CheckPatch2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ update_CivOptions(handles,0) %------------------------------------------------------------------------ % --- activated by any checkbox controling the selection of Civ1,Fix1,Patch1,Civ2,Fix2,Patch2 function update_CivOptions(handles,opening) %------------------------------------------------------------------------ if opening>0 set(handles.CheckCiv2,'UserData',opening)% store the info on the current status of the civ processing end checkbox=zeros(1,6); checkbox(1)=get(handles.CheckCiv1,'Value'); checkbox(2)=get(handles.CheckFix1,'Value'); checkbox(3)=get(handles.CheckPatch1,'Value'); checkbox(4)=get(handles.CheckCiv2,'Value'); checkbox(5)=get(handles.CheckFix2,'Value'); checkbox(6)=get(handles.CheckPatch2,'Value'); if opening==0 errormsg=find_netcpair_civ(handles,1); % select the available netcdf files if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end end if max(checkbox(4:6))>0% case of civ2 pair choice needed set(handles.TitlePairCiv2,'Visible','on') set(handles.ListPairCiv2,'Visible','on') if ~opening errormsg=find_netcpair_civ(handles,2); % select the available netcdf files if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end end else set(handles.ListPairCiv2,'Visible','off') end hseries=findobj(allchild(0),'Tag','series');% find the parent GUI 'series' hhseries=guidata(hseries); %handles of the elements in 'series' InputTable=get(hhseries.InputTable,'Data'); if size(InputTable,1)>=1 && strcmp(InputTable{1,5},'.nc') && max(checkbox(1:3))==0 %&& get(handles.CheckCiv2,'UserData')==6,% no operation asked before Civ2 and input file ready for civ3 set(handles.CheckCiv3,'Visible','on') else set(handles.CheckCiv3,'Visible','off') end %% set the visibility of the different panels options={'Civ1','Fix1','Patch1','Civ2','Fix2','Patch2'}; for ilist=1:length(options) if checkbox(ilist) set(handles.(options{ilist}),'Visible','on') else set(handles.(options{ilist}),'Visible','off') end end %------------------------------------------------------------------------ % --- Executes on button press in OK: processing on local computer function OK_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ ActionInput=read_GUI(handles.civ_input);% read the infos on the GUI civ_input %% correct input inconsistencies if isfield(ActionInput,'Civ1') checkeven=(mod(ActionInput.Civ1.CorrBoxSize,2)==0); ActionInput.Civ1.CorrBoxSize(checkeven)=ActionInput.Civ1.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values ActionInput.Civ1.SearchBoxSize=max(ActionInput.Civ1.SearchBoxSize,ActionInput.Civ1.CorrBoxSize+8);% insure that the search box size is large enough checkeven=(mod(ActionInput.Civ1.SearchBoxSize,2)==0); ActionInput.Civ1.SearchBoxSize(checkeven)=ActionInput.Civ1.SearchBoxSize(checkeven)+1;% set search box sizes to odd values end if isfield(ActionInput,'Civ2') checkeven=(mod(ActionInput.Civ2.CorrBoxSize,2)==0); ActionInput.Civ2.CorrBoxSize(checkeven)=ActionInput.Civ2.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values ActionInput.Civ2.SearchBoxSize=max(ActionInput.Civ2.SearchBoxSize,ActionInput.Civ2.CorrBoxSize+4); checkeven=(mod(ActionInput.Civ2.SearchBoxSize,2)==0); ActionInput.Civ2.SearchBoxSize(checkeven)=ActionInput.Civ2.SearchBoxSize(checkeven)+1;% set search box sizes to odd values end %% correct mask or grid name for Windows system (replace '\' by '/') if isfield(ActionInput,'Civ1') if isfield(ActionInput.Civ1,'Mask') ActionInput.Civ1.Mask=regexprep(ActionInput.Civ1.Mask,'\','/'); end if isfield(ActionInput.Civ1,'Grid') ActionInput.Civ1.Grid=regexprep(ActionInput.Civ1.Grid,'\','/'); end end if isfield(ActionInput,'Civ2') if isfield(ActionInput.Civ2,'Mask') ActionInput.Civ2.Mask=regexprep(ActionInput.Civ2.Mask,'\','/'); end if isfield(ActionInput.Civ2,'Grid') ActionInput.Civ2.Grid=regexprep(ActionInput.Civ2.Grid,'\','/'); end end %% exit the GUI and close it handles.output.ActionInput=ActionInput; guidata(hObject, handles);% Update handles structure uiresume(handles.civ_input); %------------------------------------------------------------------------ % --- Executes on button press in ListCompareMode. function ListCompareMode_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ ListCompareMode=get(handles.ListCompareMode,'String'); option=ListCompareMode{get(handles.ListCompareMode,'Value')}; hseries=findobj(allchild(0),'Tag','series'); SeriesData=get(hseries,'UserData'); check_nc=strcmp(SeriesData.FileType{1},'.nc'); ImageType=SeriesData.FileType(2:end); if check_nc ImageType=SeriesData.FileType(2:end); else ImageType=SeriesData.FileType; end hhseries=guidata(hseries); InputTable=get(hhseries.InputTable,'Data'); OriginIndex='off'; PairIndices='off'; DoubleInputSeries='off'; switch option case 'PIV' PairIndices='on';% needs to define index pairs for PIV case 'PIV volume' PairIndices='on';% needs to define index pairs for PIV set(handles.ListPairMode,'Value',1) set(handles.ListPairMode,'String',{'series(Di)'}) ListPairMode_Callback(hObject, eventdata, handles) case 'displacement' OriginIndex='on';%define a frame origin for displacement % case 'shift' % if numel(ImageType)==1 % fileinput=uigetfile_uvmat('pick a second file series for synchronous shift',InputTable{check_nc+1}); % if ~isempty(fileinput) % series( 'display_file_name',hhseries,fileinput,'append') % end % % % end end set(handles.num_OriginIndex,'Visible',OriginIndex) set(handles.OriginIndex_title,'Visible',OriginIndex) set(handles.PairIndices,'Visible',PairIndices) ListPairMode_Callback(hObject, eventdata, handles) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Pair Indices %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in ListPairMode. function ListPairMode_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ compare_list=get(handles.ListCompareMode,'String'); val=get(handles.ListCompareMode,'Value'); compare=compare_list{val}; if strcmp(compare,'displacement')||strcmp(compare,'shift') mode='displacement'; else mode_list=get(handles.ListPairMode,'String'); if ischar(mode_list) mode_list={mode_list}; end mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; end % displ_num=[];%default ref_i=str2double(get(handles.ref_i,'String')); % last_i=str2num(get(handles.last_i,'String')); CivInputData=get(handles.civ_input,'UserData'); TimeUnit=get(handles.TimeUnit,'String'); checkframe=strcmp(TimeUnit,'frame'); time=CivInputData.Time; siztime=size(CivInputData.Time); nbfield=siztime(1)-1; nbfield2=siztime(2)-1; %indchosen=1; %%first pair selected by default %displ_num used to define the indices of the civ_input pairs % in mode 'pair j1-j2', j1 and j2 are the file indices, else the indices % are relative to the reference indices ref_i and ref_j respectively. if isequal(mode,'pair j1-j2') dt=1; displ=''; index=0; numlist_a=[]; numlist_B=[]; %get all the time intervals in bursts displ_dt=1;%default nbfield2=min(nbfield2,10);%limitate the number of pairs to 10x10 for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'pair j1-j2' mode for numod_b=(numod_a+1):nbfield2 index=index+1; numlist_a(index)=numod_a; numlist_b(index)=numod_b; if size(time,2)>1 && ~checkframe && size(CivInputData.Time,1)>ref_i && size(CivInputData.Time,2)>numod_b dt(numod_a,numod_b)=CivInputData.Time(ref_i+1,numod_b+1)-CivInputData.Time(ref_i+1,numod_a+1);%first time interval dt displ_dt(index)=dt(numod_a,numod_b); else displ_dt(index)=1; end end end [dtsort,indsort]=sort(displ_dt); if ~isempty(numlist_a) displ_num(1,:)=numlist_a(indsort); displ_num(2,:)=numlist_b(indsort); end displ_num(3,:)=0; displ_num(4,:)=0; enable_j(handles, 'off') elseif isequal(mode,'series(Dj)') %| isequal(mode,'st_series(Dj)') index=1:200; displ_num(1,index)=-floor(index/2); displ_num(2,index)=ceil(index/2); displ_num(3:4,index)=zeros(2,200); enable_j(handles, 'on') elseif isequal(mode,'series(Di)') %| isequal(mode,'st_series(Di)') % index=1:200; % displ_num(1:2,index)=zeros(2,200); % displ_num(3,index)=-floor(index/2); % displ_num(4,index)=ceil(index/2); enable_i(handles, 'on') if nbfield2 > 1 enable_j(handles, 'on') else enable_j(handles, 'off') end elseif isequal(mode,'displacement')%the pairs have the same indices displ_num(1,1)=0; displ_num(2,1)=0; displ_num(3,1)=0; displ_num(4,1)=0; if nbfield > 1 || nbfield==0 enable_i(handles, 'on') else enable_j(handles, 'off') end if nbfield2 > 1 enable_j(handles, 'on') else enable_j(handles, 'off') end end %set(handles.ListPairCiv1,'UserData',displ_num); errormsg=find_netcpair_civ( handles,1); if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) end % find_netcpair_civ2(handles) function enable_i(handles, state) set(handles.itext,'Visible',state) % set(handles.MinIndex_i,'Visible',state) % set(handles.last_i,'Visible',state) % set(handles.incr_i,'Visible',state) set(handles.MaxIndex_i,'Visible',state) set(handles.ref_i,'Visible',state) function enable_j(handles, state) set(handles.jtext,'Visible',state) % set(handles.MinIndex_j,'Visible',state) % set(handles.last_j,'Visible',state) % set(handles.incr_j,'Visible',state) set(handles.MinIndex_j,'Visible',state) set(handles.MaxIndex_j,'Visible',state) set(handles.ref_j,'Visible',state) %hseries=findobj(allchild(0),'Tag','series'); %hhseries=guidata(hseries); %series('enable_j',hhseries,state); %file input with xml reading in uvmat, show the image in phys coordinates %------------------------------------------------------------------------ % --- Executes on selection change in ListPairCiv1. function ListPairCiv1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ %reproduce by default the chosen pair in the checkciv2 menu list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs PairString=list_pair{get(handles.ListPairCiv1,'Value')}; [ind1,ind2]=... find_pair_indices(PairString); hseries=findobj(allchild(0),'Tag','series'); hhseries=guidata(hseries); set(hhseries.num_first_j,'String',num2str(ind1)); set(hhseries.num_last_j,'String',num2str(ind2)); set(hhseries.num_incr_j,'String',num2str(ind2-ind1)); set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))%civ2 selection the same as civ& by default %------------------------------------------------------------------------ % --- Executes on selection change in ListPairCiv2. function ListPairCiv2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ %------------------------------------------------------------------------ function ref_i_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); mode=mode_list{mode_value}; errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files if isequal(mode,'series(Di)') || ...% we do patch2 only (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) errormsg=find_netcpair_civ( handles,2); end if isempty(errormsg) set(handles.ref_i,'BackgroundColor',[1 1 1]) set(handles.ref_j,'BackgroundColor',[1 1 1]) else msgbox_uvmat('ERROR',errormsg) end function ref_i_KeyPressFcn(hObject, eventdata, handles) set(hObject,'BackgroundColor',[1 0 1]) % %------------------------------------------------------------------------ % function ref_j_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % mode_list=get(handles.ListPairMode,'String'); % mode_value=get(handles.ListPairMode,'Value'); % mode=mode_list{mode_value}; % errormsg=''; % if isequal(get(handles.CheckCiv1,'Value'),0)|| isequal(mode,'series(Dj)') % errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files % end % if isequal(mode,'series(Dj)') || ... % (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) % errormsg=find_netcpair_civ(handles,2); % end % if ~isempty(errormsg) % msgbox_uvmat('ERROR',errormsg) % end % % function ref_j_KeyPressFcn(hObject, eventdata, handles) % set(handles.ref_j,'BackgroundColor',[1 0 1]) %------------------------------------------------------------------------ % determine the menu for checkciv1 pairs depending on existing netcdf file at the middle of % the field series set by MinIndex_i, incr, last_i % index=1: look for pairs for civ1 % index=2: look for pairs for civ2 function errormsg=find_netcpair_civ(handles,index) %------------------------------------------------------------------------ set(gcf,'Pointer','watch')% set the mouse pointer to 'watch' (clock) %% initialisation errormsg=''; CivInputData=get(handles.civ_input,'UserData'); %browse=get(handles.RootPath,'UserData'); compare_list=get(handles.ListCompareMode,'String'); val=get(handles.ListCompareMode,'Value'); compare=compare_list{val}; if ~strcmp(compare,'displacement')%||strcmp(compare,'shift') mode_list=get(handles.ListPairMode,'String'); mode_value=get(handles.ListPairMode,'Value'); if isempty(mode_list) return end mode=mode_list{mode_value}; end nom_type_ima=CivInputData.NomTypeIma; menu_pair=get(handles.ListPairCiv1,'String');%previous menu of ListPairCiv1 PairCiv1Init=menu_pair{get(handles.ListPairCiv1,'Value')};%previous choice of pair menu_pair=get(handles.ListPairCiv2,'String');%previous menu of ListPairCiv1 PairCiv2Init=menu_pair{get(handles.ListPairCiv2,'Value')};%previous choice of pair %% determine nom_type_nc, nomenclature type of the .nc files: %[nom_type_nc]=nomtype2pair(nom_type_ima,mode); %% reads .nc subdirectoy and image numbers from the interface %SubDirImages=get(handles.Civ1_ImageA,'String'); %TODO: determine %subdir_civ1=[SubDirImages get(handles.Civ1_ImageB,'String')];%subdirectory subdir_civ1 for the netcdf data %subdir_civ2=[SubDirImages get(handles.Civ2_ImageA,'String')];%subdirectory subdir_civ2 for the netcdf data ref_i=str2double(get(handles.ref_i,'String')); ref_j=[]; if isequal(mode,'pair j1-j2')%|isequal(mode,'st_pair j1-j2') ref_j=0; elseif strcmp(get(handles.ref_j,'Visible'),'on') ref_j=str2double(get(handles.ref_j,'String')); end if isempty(ref_j) ref_j=1; end CivInputData=get(handles.civ_input,'UserData'); TimeUnit=get(handles.TimeUnit,'String'); Time=CivInputData.Time; checkframe=strcmp(TimeUnit,'frame'); %% case with no Civ1 operation, netcdf files need to exist for reading displ_pair={''}; nbpair=200;%default select=ones(size(1:nbpair));%flag for displayed pairs =1 for display %nbpair=200; %default %% determine the menu display in .ListPairCiv1 switch mode case 'series(Di)' for ipair=1:nbpair if select(ipair) displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; displ_pair_dt{ipair}=displ_pair{ipair}; if ~checkframe if size(Time,1)>=ref_i+1+ceil(ipair/2) && size(Time,2)>=ref_j+1&& ref_i-floor(ipair/2)>=0 && ref_j>=0 dt=Time(ref_i+1+ceil(ipair/2),ref_j+1)-Time(ref_i+1-floor(ipair/2),ref_j+1);%Time interval dtref_j+1 displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(dt*1000)]; end else dt=ipair/1000; displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(ipair)]; end else displ_pair{ipair}='...'; displ_pair_dt{ipair}='...'; %pair not displayed in the menu end end case 'series(Dj)' for ipair=1:nbpair if select(ipair) displ_pair{ipair}=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; displ_pair_dt{ipair}=displ_pair{ipair}; if ~checkframe if size(Time,2)>=ref_j+1+ceil(ipair/2) && size(Time,1)>=ref_i+1 && ref_j-floor(ipair/2)>=0 && ref_i>=0 dt=Time(ref_i+1,ref_j+1+ceil(ipair/2))-Time(ref_i+1,ref_j+1-floor(ipair/2));%Time interval dtref_j+1 displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(dt*1000)]; end else dt=ipair/1000; displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(dt*1000)]; end else displ_pair{ipair}='...'; %pair not displayed in the menu displ_pair_dt{ipair}='...'; %pair not displayed in the menu end end case 'pair j1-j2'%case of pairs % MinIndex_j=CivInputData.MinIndex_j; % MaxIndex_j=min(CivInputData.MaxIndex_j,10);%limitate the number of pairs to 10x10 MinIndex_j=str2num(get(handles.MinIndex_j,'String')); MaxIndex_j=str2num(get(handles.MaxIndex_j,'String')); index_pair=0; %get all the Time intervals in bursts displ_pair_dt=''; for numod_a=MinIndex_j:MaxIndex_j-1 %nbfield2 always >=2 for 'pair j1-j2' mode for numod_b=(numod_a+1):MaxIndex_j index_pair=index_pair+1; displ_pair{index_pair}=['j= ' num2stra(numod_a,nom_type_ima) '-' num2stra(numod_b,nom_type_ima)]; displ_pair_dt{index_pair}=displ_pair{index_pair}; dt(index_pair)=numod_b-numod_a;%default dt if size(Time,1)>ref_i && size(Time,2)>numod_b % && ~checkframe dt(index_pair)=Time(ref_i+1,numod_b+1)-Time(ref_i+1,numod_a+1);% Time interval dt displ_pair_dt{index_pair}=[displ_pair_dt{index_pair} ' :dt= ' num2str(dt(index_pair)*1000)]; end end end if index_pair ~=0 [tild,indsort]=sort(dt); displ_pair=displ_pair(indsort); displ_pair_dt=displ_pair_dt(indsort); end case 'displacement' displ_pair={'Di=Dj=0'}; displ_pair_dt={'Di=Dj=0'}; end if index==1 set(handles.ListPairCiv1,'String',displ_pair_dt'); end %% determine the default selection in the pair menu for Civ1 %ichoice=find(select,1);% index of first selected pair %if (isempty(ichoice) || ichoice < 1); ichoice=1; end; end_pair=regexp(PairCiv1Init,' :dt='); if ~isempty(end_pair) PairCiv1Init=PairCiv1Init(1:end_pair-1); end ichoice=find(strcmp(PairCiv1Init,displ_pair'),1); if ~isempty(ichoice) set(handles.ListPairCiv1,'Value',ichoice);% first valid pair proposed by default in the menu else set(handles.ListPairCiv1,'Value',1) end % if initial>nbpair || (numel(select)>=initial && ~isequal(select(initial),1)) % set(handles.ListPairCiv1,'Value',ichoice);% first valid pair proposed by default in the menu % end %% determine the default selection in the pair menu for Civ2 if strcmp(get(handles.ListPairCiv2,'Visible'),'on') end_pair=regexp(PairCiv2Init,' :dt='); if ~isempty(end_pair) PairCiv2Init=PairCiv2Init(1:end_pair-1); end ichoice=find(strcmp(PairCiv2Init,displ_pair'),1); if ~isempty(ichoice) set(handles.ListPairCiv2,'Value',ichoice);% first valid pair proposed by default in the menu else set(handles.ListPairCiv2,'Value',1) end else set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))% initiate the choice of Civ2 as a reproduction of if civ1 end set(handles.ListPairCiv2,'String',displ_pair_dt'); set(gcf,'Pointer','arrow')% Indicate that the process is finished %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Reference Indices %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ function MinIndex_i_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ first_i=str2double(get(handles.MinIndex_i,'String')); set(handles.ref_i,'String', num2str(first_i))% reference index for pair dt = first index ref_i_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) % %------------------------------------------------------------------------ % function MinIndex_j_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % first_j=str2num(get(handles.MinIndex_j,'String')); % set(handles.ref_j,'String', num2str(first_j))% reference index for pair dt = first index % ref_j_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Civ1 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in SearchRange: determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 function SearchRange_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ %determine pair numbers if strcmp(get(handles.num_UMin,'Visible'),'off') set(handles.u_title,'Visible','on') set(handles.v_title,'Visible','on') set(handles.num_UMin,'Visible','on') set(handles.num_UMax,'Visible','on') set(handles.num_VMin,'Visible','on') set(handles.num_VMax,'Visible','on') %set(handles.CoordUnit,'Visible','on') %set(handles.TimeUnit,'Visible','on') %set(handles.slash_title,'Visible','on') set(handles.min_title,'Visible','on') set(handles.max_title,'Visible','on') set(handles.unit_title,'Visible','on') else get_search_range(hObject, eventdata, handles) end %------------------------------------------------------------------------ % --- determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 and shift function get_search_range(hObject, eventdata, handles) %------------------------------------------------------------------------ param_civ1=read_GUI(handles.Civ1); umin=param_civ1.UMin; umax=param_civ1.UMax; vmin=param_civ1.VMin; vmax=param_civ1.VMax; %switch min_title and max_title in case of error if umax<=umin umin_old=umin; umin=umax; umax=umin_old; set(handles.num_UMin,'String', num2str(umin)) set(handles.num_UMax,'String', num2str(umax)) end if vmax<=vmin vmin_old=vmin; vmin=vmax; vmax=vmin_old; set(handles.num_VMin,'String', num2str(vmin)) set(handles.num_VMax,'String', num2str(vmax)) end if ~(isempty(umin)||isempty(umax)||isempty(vmin)||isempty(vmax)) % list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs % index=get(handles.ListPairCiv1,'Value'); % pair_string=list_pair{index}; % time=get(handles.TimeSource,'UserData'); %get the set of times % pxcm=get(handles.SearchRange,'UserData'); % mode_list=get(handles.ListPairMode,'String'); % mode_value=get(handles.ListPairMode,'Value'); % mode=mode_list{mode_value}; % if isequal (mode, 'series(Di)' ) % ref_i=str2double(get(handles.ref_i,'String')); % num1=ref_i-floor(index/2);% first image numbers % num2=ref_i+ceil(index/2); % num_a=1; % num_b=1; % elseif isequal (mode, 'series(Dj)') % num1=1; % num2=1; % ref_j=str2double(get(handles.ref_j,'String')); % num_a=ref_j-floor(index/2);% first image numbers % num_b=ref_j+ceil(index/2); % elseif isequal(mode,'pair j1-j2') %case of bursts (png_old or png_2D) % ref_i=str2double(get(handles.ref_i,'String')); % num1=ref_i; % num2=ref_i; % r=regexp(pair_string,'(?(Di=)|(Dj=)) -*(?\d+)\|(?\d+)','names'); % if isempty(r) % r=regexp(pair_string,'(?\d+)(?-)(?\d+)','names'); % end % num_a=str2num(r.num1); % num_b=str2num(r.num2); % end % dt=time(num2+1,num_b+1)-time(num1+1,num_a+1); % ibx=str2double(get(handles.num_CorrBoxSize_1,'String')); % iby=str2double(get(handles.num_CorrBoxSize_2,'String')); % umin=dt*pxcm*umin; % umax=dt*pxcm*umax; % vmin=dt*pxcm*vmin; % vmax=dt*pxcm*vmax; shiftx=round((umin+umax)/2); shifty=round((vmin+vmax)/2); isx=(umax+2-shiftx)*2+param_civ1.CorrBoxSize(1); isx=2*ceil(isx/2)+1; isy=(vmax+2-shifty)*2+param_civ1.CorrBoxSize(2); isy=2*ceil(isy/2)+1; set(handles.num_SearchBoxShift_1,'String',num2str(shiftx)); set(handles.num_SearchBoxShift_2,'String',num2str(shifty)); set(handles.num_SearchBoxSize_1,'String',num2str(isx)); set(handles.num_SearchBoxSize_2,'String',num2str(isy)); end %------------------------------------------------------------------------ % --- Executes on selection in menu CorrSmooth. function num_CorrSmooth_Callback(hObject, eventdata, handles) set(handles.ConfigSource,'String','NEW') set(handles.OK,'BackgroundColor',[1 0 1]) %------------------------------------------------------------------------ % --- Executes on button press in CheckDeformation. function CheckDeformation_Callback(hObject, eventdata, handles) set(handles.ConfigSource,'String','NEW') set(handles.OK,'BackgroundColor',[1 0 1]) handles_CoorSmooth=findobj(get(handles.Civ2,'children'),'Tag','num_CorrSmooth'); if get(handles.CheckDeformation,'Value') set(handles_CoorSmooth,'Visible','off') else set(handles_CoorSmooth,'Visible','on') end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Fix1 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % % --- Executes on button press in CheckMask. % function get_mask_fix1_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % maskval=get(handles.CheckMask,'Value'); % if isequal(maskval,0) % set(handles.Mask,'String','') % else % mask_displ='no mask'; %default % filebase=get(handles.RootPath,'String'); % [nbslice, flag_mask]=get_mask(filebase,handles); % if isequal(flag_mask,1) % mask_displ=[num2str(nbslice) 'mask']; % elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series % filebase_a=get(handles.RootFile_1,'String'); % [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); % if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) % mask_displ='no mask'; % end % end % if isequal(mask_displ,'no mask') % [FileName, PathName, filterindex] = uigetfile( ... % {'*.png', ' (*.png)'; % '*.png', '.png files '; ... % '*.*', 'All Files (*.*)'}, ... % 'Pick a mask file *.png',filebase); % mask_displ=fullfile(PathName,FileName); % if ~exist(mask_displ,'file') % mask_displ='no mask'; % end % end % if isequal(mask_displ,'no mask') % set(handles.CheckMask,'Value',0) % set(handles.CheckMask,'Value',0) % set(handles.CheckMask,'Value',0) % else % %set(handles.CheckMask,'Value',1) % set(handles.CheckMask,'Value',1) % end % set(handles.Mask,'String',mask_displ) % set(handles.Mask,'String',mask_displ) % set(handles.Mask,'String',mask_displ) % end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Callbacks in the uipanel Civ2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in CheckMask: select box for mask option function get_mask_civ2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ maskval=get(handles.CheckMask,'Value'); if isequal(maskval,0) set(handles.Mask,'String','') else mask_displ='no mask'; %default filebase=get(handles.RootPath,'String'); [nbslice, flag_mask]=get_mask(filebase,handles); if isequal(flag_mask,1) mask_displ=[num2str(nbslice) 'mask']; elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series filebase_a=get(handles.RootFile_1,'String'); [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) mask_displ='no mask'; end end if isequal(mask_displ,'no mask') [FileName, PathName, filterindex] = uigetfile( ... {'*.png', ' (*.png)'; '*.png', '.png files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a mask file *.png',filebase); mask_displ=fullfile(PathName,FileName); if ~exist(mask_displ,'file') mask_displ='no mask'; end end if isequal(mask_displ,'no mask') set(handles.CheckMask,'Value',0) set(handles.CheckMask,'Value',0) else set(handles.CheckMask,'Value',1) end set(handles.Mask,'String',mask_displ) end % %------------------------------------------------------------------------ % % --- Executes on button press in CheckMask. % function get_mask_fix2_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % maskval=get(handles.CheckMask,'Value'); % if isequal(maskval,0) % set(handles.Mask,'String','') % else % mask_displ='no mask'; %default % filebase=get(handles.RootPath,'String'); % [nbslice, flag_mask]=get_mask(filebase,handles); % if isequal(flag_mask,1) % mask_displ=[num2str(nbslice) 'mask']; % elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series % filebase_a=get(handles.RootFile_1,'String'); % [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); % if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) % mask_displ='no mask'; % end % end % if isequal(mask_displ,'no mask') % [FileName, PathName, filterindex] = uigetfile( ... % {'*.png', ' (*.png)'; % '*.png', '.png files '; ... % '*.*', 'All Files (*.*)'}, ... % 'Pick a mask file *.png',filebase); % mask_displ=fullfile(PathName,FileName); % if ~exist(mask_displ,'file') % mask_displ='no mask'; % end % end % if isequal(mask_displ,'no mask') % set(handles.CheckMask,'Value',0) % end % set(handles.Mask,'String',mask_displ) % end %------------------------------------------------------------------------ % --- function called to look for mask files function [nbslice, flag_mask]=get_mask(filebase,handles) %------------------------------------------------------------------------ %detect mask files, images with appropriate file base %[filebase '_' xx 'mask'], xx=nbslice %flag_mask=1 indicates detection flag_mask=0;%default nbslice=1; % subdir=get(handles.Civ1_ImageB,'String'); [Path,Name]=fileparts(filebase); if ~isdir(Path) msgbox_uvmat('ERROR','no path for input files') return end % currentdir=pwd; % cd(Path);%move in the dir of the root name filebase maskfiles=dir(fullfile(Path,[Name '_*mask_*.png']));%look for mask files % cd(currentdir);%come back to the current working directory if ~isempty(maskfiles) % msgbox_uvmat('ERROR','no mask available, to create it use Tools/Make mask in the upper menu bar of uvmat') % else flag_mask=1; maskname=maskfiles(1).name;% take the first mask file in the list [Path2,Name,ext]=fileparts(maskname); Namedouble=double(Name); val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters ind_mask=findstr('mask',Name); i=ind_mask-1; while val(i)==0 && i>0 i=i-1; end nbslice=str2double(Name(i+1:ind_mask-1)); if ~isnan(nbslice) && Name(i)=='_' flag_mask=1; else msgbox_uvmat('ERROR',['bad mask file ' Name ext ' found in ' Path2]) return nbslice=1; end end %------------------------------------------------------------------------ % --- function called to look for grid files function [nbslice, flag_grid]=get_grid(filebase,handles) %------------------------------------------------------------------------ flag_grid=0;%default nbslice=1; [Path,Name]=fileparts(filebase); currentdir=pwd; cd(Path);%move in the dir of the root name filebase gridfiles=dir([Name '_*grid_*.grid']);%look for grid files cd(currentdir);%come back to the current working directory if ~isempty(gridfiles) flag_grid=1; gridname=gridfiles(1).name;% take the first grid file in the list [Path2,Name,ext]=fileparts(gridname); Namedouble=double(Name); val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters ind_grid=findstr('grid',Name); i=ind_grid-1; while val(i)==0 && i>0 i=i-1; end nbslice=str2double(Name(i+1:ind_grid-1)); if ~isnan(nbslice) && Name(i)=='_' flag_grid=1; else msgbox_uvmat('ERROR',['bad grid file ' Name ext ' found in ' Path2]) return nbslice=1; end end %------------------------------------------------------------------------ % --- transform numbers to letters function str=num2stra(num,nom_type) %------------------------------------------------------------------------ if isempty(nom_type) str=''; elseif strcmp(nom_type(end),'a') str=char(96+num); elseif strcmp(nom_type(end),'A') str=char(96+num); elseif isempty(nom_type(2:end))%a single index str=''; else str=num2str(num); end % %------------------------------------------------------------------------ % % --- Executes on button press in ListSubdirCiv1. % function ListSubdirCiv1_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % list_subdir_civ1=get(handles.ListSubdirCiv1,'String'); % val=get(handles.ListSubdirCiv1,'Value'); % SubDir=list_subdir_civ1{val}; % if strcmp(SubDir,'new...') % if get(handles.CheckCiv1,'Value') % SubDir='CIV_INPUT'; %default subdirectory % else % msgbox_uvmat('ERROR','select CheckCiv1 to perform a new civ_input operation') % return % end % end % set(handles.Civ1_ImageB,'String',SubDir); % errormsg=find_netcpair_civ(handles,1); % if ~isempty(errormsg) % msgbox_uvmat('ERROR',errormsg) % end % %------------------------------------------------------------------------ % % --- Executes on button press in ListSubdirCiv2. % function ListSubdirCiv2_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % list_subdir_civ2=get(handles.ListSubdirCiv2,'String'); % val=get(handles.ListSubdirCiv2,'Value'); % SubDir=list_subdir_civ2{val}; % if strcmp(SubDir,'new...') % if get(handles.CheckCiv2,'Value') % SubDir='CIV_INPUT'; %default subdirectory % else % msgbox_uvmat('ERROR','select CheckCiv2 to perform a new civ_input operation') % return % end % end % set(handles.Civ2_ImageA,'String',SubDir); %------------------------------------------------------------------------ % --- Executes on button press in CheckGrid. function CheckGrid_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ value=get(hObject,'Value'); hparent=get(hObject,'parent');%handles of the parent panel hchildren=get(hparent,'children'); handle_txtbox=findobj(hchildren,'tag','Grid');% look for the grid name box in the same panel handle_dx=findobj(hchildren,'tag','num_Dx'); handle_dy=findobj(hchildren,'tag','num_Dy'); handle_title_dx=findobj(hchildren,'tag','title_Dx'); handle_title_dy=findobj(hchildren,'tag','title_Dy'); testgrid=0; filegrid=''; if value hseries=findobj(allchild(0),'Tag','series'); hhseries=guidata(hseries); InputTable=get(hhseries.InputTable,'Data'); ind_A=1;% line index of the (first) image series if strcmp(InputTable{1,5},'.nc'); ind_A=2; end filebase=InputTable{ind_A,1}; [nbslice, flag_grid]=get_grid(filebase,handles);% look for a grid with appropriate name if isequal(flag_grid,1) filegrid=[num2str(nbslice) 'grid']; testgrid=1; else % browse for a grid filegrid=get(hObject,'UserData');%look for previous grid name stored as UserData if exist(filegrid,'file') filebase=filegrid; end filegrid = uigetfile_uvmat('pick a grid file .grid:',filebase,'.grid'); set(hObject,'UserData',filegrid);%store for future use if ~isempty(filegrid) testgrid=1; end set(hObject,'UserData',filegrid);%store for future use end end if testgrid set(handle_dx,'Visible','off'); set(handle_dy,'Visible','off'); set(handle_title_dy,'Visible','off'); set(handle_title_dx,'Visible','off'); set(handle_txtbox,'Visible','on') set(handle_txtbox,'String',filegrid) else set(hObject,'Value',0); set(handle_dx,'Visible','on'); set(handle_dy,'Visible','on'); set(handle_title_dy,'Visible','on'); set(handle_title_dx,'Visible','on'); set(handle_txtbox,'Visible','off') end %% if hObject is on the checkciv1 frame, duplicate action for checkciv2 frame PanelName=get(hparent,'tag'); if strcmp(PanelName,'Civ1') hchildren=get(handles.Civ2,'children'); handle_checkbox=findobj(hchildren,'tag','CheckGrid'); handle_txtbox=findobj(hchildren,'tag','Grid'); handle_dx=findobj(hchildren,'tag','num_Dx'); handle_dy=findobj(hchildren,'tag','num_Dy'); handle_title_dx=findobj(hchildren,'tag','title_Dx'); handle_title_dy=findobj(hchildren,'tag','title_Dy'); set(handle_checkbox,'UserData',filegrid);%store for future use if testgrid set(handle_checkbox,'Value',1); set(handle_dx,'Visible','off'); set(handle_dy,'Visible','off'); set(handle_title_dx,'Visible','off'); set(handle_title_dy,'Visible','off'); set(handle_txtbox,'Visible','on') set(handle_txtbox,'String',filegrid) end end set(handles.ConfigSource,'String','NEW') set(handles.OK,'BackgroundColor',[1 0 1]) %------------------------------------------------------------------------ % --- Executes on button press in CheckMask: common to all panels (civ1, Civ2..) function CheckMask_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ value=get(hObject,'Value'); hparent=get(hObject,'parent'); parent_tag=get(hparent,'Tag'); hchildren=get(hparent,'children'); handle_txtbox=findobj(hchildren,'tag','Mask');% look for the mask name box in the same panel testmask=0; if value hseries=findobj(allchild(0),'Tag','series'); hhseries=guidata(hseries); InputTable=get(hhseries.InputTable,'Data'); ind_A=1;% line index of the (first) image series if strcmp(InputTable{1,5},'.nc'); ind_A=2; end [nbslice, flag_mask]=get_mask(InputTable{ind_A,1},handles);% look for a mask with appropriate name if isequal(flag_mask,1) filemask=[num2str(nbslice) 'mask']; testmask=1; else % browse for a mask filemask= uigetfile_uvmat('pick a mask image file:',InputTable{ind_A,1},'image'); set(hObject,'UserData',filemask);%store for future use if ~isempty(filemask) testmask=1; end end end if testmask set(handles.Mask,'Visible','on') set(handles.Mask,'String',filemask) set(handles.CheckMask,'Value',1) else set(hObject,'Value',0); set(handle_txtbox,'Visible','off') end set(handles.ConfigSource,'String','NEW') set(handles.ConfigSource,'BackgroundColor',[1 0 1]) % %------------------------------------------------------------------------ % % --- Executes on button press in get_gridpatch1. % function get_gridpatch1_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % filebase=get(handles.RootPath,'String'); % [FileName, PathName, filterindex] = uigetfile( ... % {'*.grid', ' (*.grid)'; % '*.grid', '.grid files '; ... % '*.*', 'All Files (*.*)'}, ... % 'Pick a file',filebase); % filegrid=fullfile(PathName,FileName); % set(handles.grid_patch1,'string',filegrid); % set(hObject,'BackgroundColor',[1 0 1]) %------------------------------------------------------------------------ % --- STEREO Interp function cmd=RUN_STINTERP(stinterpBin,filename_A_nc,filename_B_nc,filename_nc,nx_patch,ny_patch,rho_patch,subdomain_patch,thresh_value,xmlA,xmlB) %------------------------------------------------------------------------ namelog=[filename_nc(1:end-3) '_stinterp.log']; cmd=[stinterpBin ' -f1 ' filename_A_nc ' -f2 ' filename_B_nc ' -f ' filename_nc ... ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ' -nopt ' subdomain_patch ' -c1 ' xmlA ' -c2 ' xmlB ' -xy x -Nfy 1024 > ' namelog ' 2>&1']; % redirect standard output to the log file % %------------------------------------------------------------------------ % %--read images and convert them to the uint16 format used for PIV % function A=read_image(filename,type_ima,num,movieobject) % %------------------------------------------------------------------------ % %num is the view number needed for an avi movie % switch type_ima % case 'movie' % A=read(movieobject,num); % case 'avi' % mov=aviread(filename,num); % A=frame2im(mov(1)); % case 'multimage' % A=imread(filename,num); % case 'image' % A=imread(filename); % end % siz=size(A); % if length(siz)==3;%color images % A=sum(double(A),3); % A=uint16(A); % end %------------------------------------------------------------------------ % --- Executes on button press in get_ref_fix1. function get_ref_fix1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ filebase=get(handles.RootPath,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.nc', ' (*.nc)'; '*.nc', 'netcdf files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); fileinput=[PathName FileName]; sizf=size(fileinput); if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); ref.filebase=fullfile(Path,File); % ref.num_a=stra2num(str_a); % ref.num_b=stra2num(str_b); % ref.num1=str2double(field_count); % ref.num2=str2double(str2); browse=[];%initialisation if ~isequal(ref.ext,'.nc') msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') return end set(handles.ref_fix1,'String',[fullfile(ref.subdir,File) '....nc']); set(handles.ref_fix1,'UserData',ref) menu_field{1}='civ1'; Data=nc2struct(fileinput,[]); if isfield(Data,'patch') && isequal(Data.patch,1) menu_field{2}='filter1'; end if isfield(Data,'civ2') && isequal(Data.civ2,1) menu_field{3}='civ2'; end if isfield(Data,'patch2') && isequal(Data.patch2,1) menu_field{4}='filter2'; end set(handles.field_ref1,'String',menu_field); set(handles.field_ref1,'Value',length(menu_field)); set(handles.num_MinVel,'Value',2); set(handles.num_MinVel,'String','1');%default threshold set(handles.ref_fix1,'Enable','on') %------------------------------------------------------------------------ % --- Executes on button press in get_ref_fix2. function get_ref_fix2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ if isequal(get(handles.get_ref_fix2,'Value'),1) filebase=get(handles.RootPath,'String'); [FileName, PathName, filterindex] = uigetfile( ... {'*.nc', ' (*.nc)'; '*.nc', 'netcdf files '; ... '*.*', 'All Files (*.*)'}, ... 'Pick a file',filebase); fileinput=[PathName FileName]; sizf=size(fileinput); if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); ref.filebase=fullfile(Path,File); % ref.num_a=stra2num(str_a); % ref.num_b=stra2num(str_b); % ref.num1=str2num(field_count); % ref.num2=str2num(str2); browse=[];%initialisation if ~isequal(ref.ext,'.nc') msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') return end set(handles.ref_fix2,'String',[fullfile(ref.subdir,File) '....nc']); set(handles.ref_fix2,'UserData',ref) menu_field{1}='civ1'; Data=nc2struct(fileinput,[]); if isfield(Data,'patch') && isequal(Data.patch,1) menu_field{2}='filter1'; end if isfield(Data,'civ2') && isequal(Data.civ2,1) menu_field{3}='civ2'; end if isfield(Data,'patch2') && isequal(Data.patch2,1) menu_field{4}='filter2'; end set(handles.field_ref2,'String',menu_field); set(handles.field_ref2,'Value',length(menu_field)); set(handles.num_MinVel,'Value',2); set(handles.num_MinVel,'String','1');%default threshold set(handles.ref_fix2,'Enable','on') set(handles.ref_fix2,'Visible','on') set(handles.field_ref2,'Visible','on') else set(handles.ref_fix2,'Visible','off') set(handles.field_ref2,'Visible','off') end %------------------------------------------------------------------------ function ref_fix1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ set(handles.num_MinVel,'Value',1); set(handles.field_ref1,'Value',1) set(handles.field_ref1,'String',{' '}) set(handles.ref_fix1,'UserData',[]); set(handles.ref_fix1,'String',''); set(handles.thresh_vel1,'String','0'); %------------------------------------------------------------------------ function ref_fix2_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ set(handles.num_MinVel,'Value',1); set(handles.field_ref2,'Value',1) set(handles.field_ref2,'String',{' '}) set(handles.ref_fix2,'UserData',[]); set(handles.ref_fix2,'String',''); set(handles.num_MinVel,'String','0'); %------------------------------------------------------------------------ % --- TO ABANDON Executes on button press in test_stereo1. function CheckStereo_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ hparent=get(hObject,'parent'); parent_tag=get(hparent,'Tag'); hchildren=get(hparent,'children'); handle_txtbox=findobj(hchildren,'tag','txt_Mask'); if isequal(get(hObject,'Value'),0) set(handles.num_SubDomainSize,'Visible','on') set(handles.num_FieldSmooth,'Visible','on') else set(handles.num_SubDomainSize,'Visible','off') set(handles.num_FieldSmooth,'Visible','off') end % %------------------------------------------------------------------------ % % --- Executes on button press in CheckStereo. % function StereoCheck_Callback(hObject, eventdata, handles) % %------------------------------------------------------------------------ % if isequal(get(handles.CheckStereo,'Value'),0) % set(handles.num_subdomainsize,'Visible','on') % set(handles.num_FieldSmooth,'Visible','on') % else % set(handles.num_subdomainsize,'Visible','off') % set(handles.num_FieldSmooth,'Visible','off') % end %------------------------------------------------------------------------ %----function introduced for the correlation window figure, activated by deleting this window function closeview_field(gcbo,eventdata) %------------------------------------------------------------------------ hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end %------------------------------------------------------------------------ % --- Executes on button press in CheckThreshold. function CheckThreshold_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ huipanel=get(hObject,'parent'); obj(1)=findobj(huipanel,'Tag','num_MinIma'); obj(2)=findobj(huipanel,'Tag','num_MaxIma'); obj(3)=findobj(huipanel,'Tag','title_Threshold'); if get(hObject,'Value') set(obj,'Visible','on') else set(obj,'Visible','off') end set(handles.ConfigSource,'String','NEW') set(handles.OK,'BackgroundColor',[1 0 1]) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%% TEST functions %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %------------------------------------------------------------------------ % --- Executes on button press in TestCiv1: prepare the image correlation function % activated by mouse motion function TestCiv1_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ drawnow if get(handles.TestCiv1,'Value') set(handles.TestCiv1,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch set(handles.CheckFix1,'value',0)% desactivate next step set(handles.CheckPatch1,'value',0)% desactivate next step set(handles.CheckCiv2,'value',0)% desactivate next step set(handles.CheckFix2,'value',0)% desactivate next step set(handles.CheckPatch2,'value',0)% desactivate next step update_CivOptions(handles,0) hseries=findobj(allchild(0),'Tag','series'); Param=read_GUI(hseries); Param.Action.RUN=1; Param.ActionInput=read_GUI(handles.civ_input); if isfield(Param.ActionInput,'Fix1') Param.ActionInput=rmfield(Param.ActionInput,'Fix1'); end if isfield(Param.ActionInput,'Patch1') Param.ActionInput=rmfield(Param.ActionInput,'Patch1'); end if isfield(Param.ActionInput,'Civ2')%remove options that may be selected beyond Patch1 Param.ActionInput=rmfield(Param.ActionInput,'Civ2'); end if isfield(Param.ActionInput,'Fix2') Param.ActionInput=rmfield(Param.ActionInput,'Fix2'); end if isfield(Param.ActionInput,'Patch2') Param.ActionInput=rmfield(Param.ActionInput,'Patch2'); end if isfield(Param,'OutputSubDir') Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series end Param.ActionInput.Civ1.CorrSmooth=0;% launch Civ1 with no data point (to get the image names for A and B) Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); Param.IndexRange.last_i=str2num(get(handles.ref_i,'String')); if strcmp(get(handles.ref_j,'Visible'),'on') Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); Param.IndexRange.last_j=Param.IndexRange.first_j; else Param.IndexRange.first_j=1; Param.IndexRange.last_j=1; end [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results if ~isempty(errormsg), return, end % rmq: error msg displayed in civ_series %% create image data ImageData for display ImageData.ListVarName={'ny','nx','A'}; ImageData.VarDimName= {'ny','nx',{'ny','nx'}}; ImageData.A=imread(Data.Civ1_ImageA); % read the first image if ndims(ImageData.A)==3 %case of color image ImageData.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; end ImageData.ny=[size(ImageData.A,1) 1]; ImageData.nx=[1 size(ImageData.A,2)]; ImageData.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly %% create the figure view_field for image visualization hview_field=view_field(ImageData); %view the image in the GUI view_field set(0,'CurrentFigure',hview_field) hhview_field=guihandles(hview_field); set(hview_field,'CurrentAxes',hhview_field.PlotAxes) ViewData=get(hview_field,'UserData'); ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field ViewData.PlotAxes.X=Data.Civ1_X'; ViewData.PlotAxes.Y=Data.Civ1_Y'; ViewData.PlotAxes.B=imread(Data.Civ1_ImageB);%store the second image in the UserData of the GUI view_field set(hview_field,'UserData',ViewData)% store the info in the UserData of image view_field %% look for a current figure for image correlation display corrfig=findobj(allchild(0),'tag','corrfig'); if isempty(corrfig) corrfig=figure; set(corrfig,'tag','corrfig') set(corrfig,'name','image correlation') set(corrfig,'DeleteFcn',{@closeview_field})% set(handles.TestCiv1,'BackgroundColor',[1 0 0]) else set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if ~isempty(corrfig) delete(corrfig) end hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end end else hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field if ~isempty(hview_field) delete(hview_field) end end % -------------------------------------------------------------------- % --- Executes on button press in TestPatch1. % -------------------------------------------------------------------- function TestPatch1_Callback(hObject, eventdata, handles) if get(handles.TestPatch1,'Value')% if TestPatch1 is activated set(handles.TestPatch1,'BackgroundColor',[1 1 0])%paint TestPatch1 button in yellow to indicate activation set(handles.Civ1,'BackgroundColor',[1 1 0])% indicate civ1 calculation is performed hseries=findobj(allchild(0),'Tag','series'); Param=read_GUI(hseries); Param.Action.RUN=1; Param.ActionInput=read_GUI(handles.civ_input); if isfield(Param.ActionInput,'Civ2')%remove options that may be selected beyond Patch1 Param.ActionInput=rmfield(Param.ActionInput,'Civ2'); end if isfield(Param.ActionInput,'Fix2') Param.ActionInput=rmfield(Param.ActionInput,'Fix2'); end if isfield(Param.ActionInput,'Patch2') Param.ActionInput=rmfield(Param.ActionInput,'Patch2'); end if isfield(Param,'OutputSubDir') Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series end ParamPatch1=Param.ActionInput.Patch1; %store the patch1 parameters Param.ActionInput=rmfield(Param.ActionInput,'Patch1');% does not execute Patch Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); Param.IndexRange.last_i=Param.IndexRange.first_i; if strcmp(get(handles.ref_j,'Visible'),'on') Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); Param.IndexRange.last_j=Param.IndexRange.first_j; else Param.IndexRange.first_j=1; Param.IndexRange.last_j=1; end [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results bckcolor=get(handles.civ_input,'Color'); set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calculation is finished %% prepare Param for iterative Patch processing without input file reading Param.Civ1_X=Data.Civ1_X; Param.Civ1_Y=Data.Civ1_Y; Param.Civ1_U=Data.Civ1_U; Param.Civ1_V=Data.Civ1_V; Param.Civ1_FF=Data.Civ1_FF; Param=rmfield(Param,'InputTable');%desactivate input file reading if isfield(Param.ActionInput,'Civ1') Param.ActionInput=rmfield(Param.ActionInput,'Civ1');%desactivate civ1: remove civ1 input param if relevant end if isfield(Param.ActionInput,'Fix1') Param.ActionInput=rmfield(Param.ActionInput,'Fix1');%desactivate fix1:remove fix1 input param if relevant end SmoothingParam=(ParamPatch1.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value NbGood=numel(find(Data.Civ1_FF==0)); NbExclude=zeros(1,7);% initialize the set of smoothing parameters DiffVel=zeros(1,7);% initialize the rms difference between patch and civ Param.ActionInput.Patch1=ParamPatch1;% retrieve Patch1 parameters for irho=1:7 Param.ActionInput.Patch1.FieldSmooth=SmoothingParam(irho); [Data,errormsg]= civ_series(Param);%apply the processing fct if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) return end ind_good=find(Data.Civ1_FF==0); Civ1_U_Diff=Data.Civ1_U(ind_good)-Data.Civ1_U_smooth(ind_good); Civ1_V_Diff=Data.Civ1_V(ind_good)-Data.Civ1_V_smooth(ind_good); DiffVel(irho)=sqrt(mean(Civ1_U_Diff.*Civ1_U_Diff+Civ1_V_Diff.*Civ1_V_Diff)); NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; end figure(1) semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r',SmoothingParam,0.2*ones(size(SmoothingParam)),'m') grid on legend('rms velocity diff. Patch1-Civ1 (pixels)','proportion of excluded vectors (between 0 to 1)','recommended diff Patch1-Civ1') xlabel('smoothing parameter') ylabel('smoothing effect') set(handles.TestPatch1,'BackgroundColor',[0 1 0]) else corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if ~isempty(corrfig) delete(corrfig) end hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end end %------------------------------------------------------------------------ % --- Executes on button press in TestCiv2. %------------------------------------------------------------------------ function TestCiv2_Callback(hObject, eventdata, handles) drawnow if get(handles.TestCiv2,'Value') set(handles.TestCiv2,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch set(handles.CheckFix2,'value',0)% desactivate next step set(handles.CheckPatch2,'value',0)% desactivate next step update_CivOptions(handles,0) hseries=findobj(allchild(0),'Tag','series'); Param=read_GUI(hseries); Param.Action.RUN=1; Param.ActionInput=read_GUI(handles.civ_input); if isfield(Param,'OutputSubDir') Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series end Param.ActionInput.Civ2.CorrSmooth=0;% launch Civ2 with no data point (to get the image names for A and B) set(handles.Civ1,'BackgroundColor',[1 1 0]) set(handles.Fix1,'BackgroundColor',[1 1 0]) set(handles.Patch1,'BackgroundColor',[1 1 0]) Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); Param.IndexRange.last_i=Param.IndexRange.first_i; if strcmp(get(handles.ref_j,'Visible'),'on') Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); Param.IndexRange.last_j=Param.IndexRange.first_j; else Param.IndexRange.first_j=1; Param.IndexRange.last_j=1; end [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results %% create image data ImageData for display ImageData.ListVarName={'ny','nx','A'}; ImageData.VarDimName= {'ny','nx',{'ny','nx'}}; ImageData.A=imread(Data.Civ2_ImageA); % read the first image if ndims(ImageData.A)==3 %case of color image ImageData.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; end ImageData.ny=[size(ImageData.A,1) 1]; ImageData.nx=[1 size(ImageData.A,2)]; ImageData.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly %% create the figure view_field for image visualization hview_field=view_field(ImageData); %view the image in the GUI view_field set(0,'CurrentFigure',hview_field) % plot the boundaries of the subdomains used for patch for isub=1:size(Data.Civ1_SubRange,3); pos_x=Data.Civ1_SubRange(1,1,isub); pos_y=Data.Civ1_SubRange(2,1,isub); width=Data.Civ1_SubRange(1,2,isub)-Data.Civ1_SubRange(1,1,isub); height=Data.Civ1_SubRange(2,2,isub)-Data.Civ1_SubRange(2,1,isub); rectangle('Position',[pos_x pos_y width height],'EdgeColor',[0 0 1]) end hhview_field=guihandles(hview_field);% set(hview_field,'CurrentAxes',hhview_field.PlotAxes) ViewData=get(hview_field,'UserData'); % get the currently plotted field (the image A) % store info in the UserData of view-field ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field ViewData.PlotAxes.B=imread(Data.Civ2_ImageB);%store the second image in the UserData of the GUI view_field ViewData.PlotAxes.X=Data.Civ2_X'; ViewData.PlotAxes.Y=Data.Civ2_Y'; ViewData.PlotAxes.ShiftX=Data.Civ2_U';% shift at each point (from patch1) estimated by the preliminary run of civ2 ViewData.PlotAxes.ShiftY=Data.Civ2_V'; ViewData.PlotAxes.Civ1_SubRange=Data.Civ1_SubRange; ViewData.PlotAxes.Civ1_NbCentres=Data.Civ1_NbCentres; ViewData.PlotAxes.Civ1_Coord_tps=Data.Civ1_Coord_tps; ViewData.PlotAxes.Civ1_U_tps=Data.Civ1_U_tps; ViewData.PlotAxes.Civ1_V_tps=Data.Civ1_V_tps; ViewData.PlotAxes.Civ1_Dt=Data.Civ1_Dt; ViewData.PlotAxes.Civ2_Dt=Data.Civ2_Dt; set(hview_field,'UserData',ViewData)% store the info in the UserData of image view_field bckcolor=get(handles.civ_input,'Color'); set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calmculation is finished set(handles.Fix1,'BackgroundColor',bckcolor) set(handles.Patch1,'BackgroundColor',bckcolor) drawnow %% look for a current figure for image correlation display corrfig=findobj(allchild(0),'tag','corrfig'); if isempty(corrfig) corrfig=figure; set(corrfig,'tag','corrfig') set(corrfig,'name','image correlation') set(corrfig,'DeleteFcn',{@closeview_field})% set(handles.TestCiv1,'BackgroundColor',[1 0 0]) else set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if ~isempty(corrfig) delete(corrfig) end hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end end else hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field if ~isempty(hview_field) delete(hview_field) end end % --- Executes on button press in TestPatch2. function TestPatch2_Callback(hObject, eventdata, handles) if get(handles.TestPatch2,'Value')% if TestPatch2 is activated set(handles.TestPatch2,'BackgroundColor',[1 1 0])%paint TestPatch2 button in yellow to indicate activation set(handles.Civ1,'BackgroundColor',[1 1 0])% indicate civ1 calculation is activated set(handles.Fix1,'BackgroundColor',[1 1 0])% indicate fix1 calculation is activated set(handles.Patch1,'BackgroundColor',[1 1 0])% indicate Patch1 calculation is activated set(handles.Civ2,'BackgroundColor',[1 1 0])% indicate civ2 calculation is activated set(handles.Fix2,'BackgroundColor',[1 1 0])% indicate fix2 calculation is activated hseries=findobj(allchild(0),'Tag','series'); Param=read_GUI(hseries); Param.Action.RUN=1; Param.ActionInput=read_GUI(handles.civ_input); if isfield(Param,'OutputSubDir') Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series end ParamPatch2=Param.ActionInput.Patch2; %store the patch1 parameters Param.ActionInput=rmfield(Param.ActionInput,'Patch2');% does not execute Patch Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); Param.IndexRange.last_i=Param.IndexRange.first_i; if strcmp(get(handles.ref_j,'Visible'),'on') Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); Param.IndexRange.last_j=Param.IndexRange.first_j; else Param.IndexRange.first_j=1; Param.IndexRange.last_j=1; end [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results bckcolor=get(handles.civ_input,'Color'); set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calculation is finished set(handles.Fix1,'BackgroundColor',bckcolor)% indicate fix1 calculation is finished set(handles.Patch1,'BackgroundColor',bckcolor)% indicate Patch1 calculation is finished set(handles.Civ2,'BackgroundColor',bckcolor)% indicate civ2 calculation is finished set(handles.Fix2,'BackgroundColor',bckcolor)% indicate fix2 calculation is finished %% prepare Param for iterative Patch processing without input file reading Param.Civ2_X=Data.Civ2_X; Param.Civ2_Y=Data.Civ2_Y; Param.Civ2_U=Data.Civ2_U; Param.Civ2_V=Data.Civ2_V; Param.Civ2_FF=Data.Civ2_FF; Param=rmfield(Param,'InputTable');%desactivate input file reading if isfield(Param.ActionInput,'Civ1') Param.ActionInput=rmfield(Param.ActionInput,'Civ1');%desactivate civ1: remove civ1 input param if relevant end if isfield(Param.ActionInput,'Fix1') Param.ActionInput=rmfield(Param.ActionInput,'Fix1');%desactivate fix1:remove fix1 input param if relevant end if isfield(Param.ActionInput,'Patch1') Param.ActionInput=rmfield(Param.ActionInput,'Patch1');%desactivate fix1:remove fix1 input param if relevant end if isfield(Param.ActionInput,'Civ2') Param.ActionInput=rmfield(Param.ActionInput,'Civ2');%desactivate civ2: remove civ2 input param if relevant end if isfield(Param.ActionInput,'Fix2') Param.ActionInput=rmfield(Param.ActionInput,'Fix2');%desactivate fix1:remove fix1 input param if relevant end SmoothingParam=(ParamPatch2.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value NbGood=numel(find(Data.Civ2_FF==0)); NbExclude=zeros(1,7);% initialize the set of smoothing parameters DiffVel=zeros(1,7);% initialize the rms difference between patch and civ Param.ActionInput.Patch2=ParamPatch2;% retrieve Patch2 parameters for irho=1:7 Param.ActionInput.Patch2.FieldSmooth=SmoothingParam(irho); [Data,errormsg]= civ_series(Param);%apply the processing fct if ~isempty(errormsg) msgbox_uvmat('ERROR',errormsg) return end ind_good=find(Data.Civ2_FF==0); Civ2_U_Diff=Data.Civ2_U(ind_good)-Data.Civ2_U_smooth(ind_good); Civ2_V_Diff=Data.Civ2_V(ind_good)-Data.Civ2_V_smooth(ind_good); DiffVel(irho)=sqrt(mean(Civ2_U_Diff.*Civ2_U_Diff+Civ2_V_Diff.*Civ2_V_Diff)); NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; end figure(1) semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r',SmoothingParam,0.1*ones(size(SmoothingParam)),'m') grid on legend('rms velocity diff. Patch2-Civ2 (pixels)','proportion of excluded vectors (between 0 to 1)','recommended value diff. Patch2-Civ2') xlabel('smoothing parameter') ylabel('smoothing effect') set(handles.TestPatch2,'BackgroundColor',[0 1 0]) else corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display if ~isempty(corrfig) delete(corrfig) end hview_field=findobj(allchild(0),'tag','view_field');% look for view_field if ~isempty(hview_field) delete(hview_field) end end %'nomtype2pair': creates nomencalture for index pairs knowing the image nomenclature %--------------------------------------------------------------------- function NomTypeNc=nomtype2pair(NomTypeIma,mode) %--------------------------------------------------------------------- % OUTPUT: % NomTypeNc %--------------------------------------------------------------------- % INPUT: % 'NomTypeIma': string defining the kind of nomenclature used for images NomTypeNc=NomTypeIma;%default switch mode case 'pair j1-j2' if ~isempty(regexp(NomTypeIma,'a$')) NomTypeNc=[NomTypeIma 'b']; elseif ~isempty(regexp(NomTypeIma,'A$')) NomTypeNc=[NomTypeIma 'B']; else r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); if ~isempty(r) NomTypeNc='_1_1-2'; end end case 'series(Dj)' % r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); % if ~isempty(r) NomTypeNc='_1_1-2'; % end case 'series(Di)' r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); if ~isempty(r) NomTypeNc='_1-2_1'; else NomTypeNc='_1-2'; end end %------------------------------------------------------------------------ % --- determine the list of index pairs of processing file function [ind1,ind2,mode]=... find_pair_indices(str_civ,i_series,j_series,MinIndex_i,MaxIndex_i,MinIndex_j,MaxIndex_j) %------------------------------------------------------------------------ ind1=''; ind2=''; r=regexp(str_civ,'^\D(?[i|j])=( -| )(?\d+)\|(?\d+)','names'); if ~isempty(r) mode=['D' r.ind]; ind1=stra2num(r.num1); ind2=stra2num(r.num2); else mode='burst'; r=regexp(str_civ,'^j= (?[a-z])-(?[a-z])','names'); if ~isempty(r) NomTypeNc='_1ab'; else r=regexp(str_civ,'^j= (?[A-Z])-(?[A-Z])','names'); if ~isempty(r) NomTypeNc='_1AB'; else r=regexp(str_civ,'^j= (?\d+)-(?\d+)','names'); if ~isempty(r) NomTypeNc='_1_1-2'; end end end if isempty(r) display('wrong pair mode input option') else ind1=stra2num(r.num1); ind2=stra2num(r.num2); end end %------------------------------------------------------------------------ % --- fill civ_input with the parameters retrieved from an input Civ file %------------------------------------------------------------------------ function fill_civ_input(Data,handles) %% Civ param % lists of parameters to enter ListParamNum={'CorrBoxSize','SearchBoxSize','SearchBoxShift','Dx','Dy','Dz','MinIma','MaxIma'};% list of numerical values (to transform in strings) ListParamValue={'CorrSmooth','CheckGrid','CheckMask','CheckThreshold'}; ListParamString={'Grid','Mask'}; % CorrSmooth ?? option={'Civ1','Civ2'}; for ichoice=1:2 if isfield(Data,[option{ichoice} '_CorrBoxSize']) fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) end end %% Fix param option={'Fix1','Fix2'}; for ichoice=1:2 if isfield(Data,[option{ichoice} '_CheckFmin2']) ListParamNum={'MinVel','MaxVel','MinCorr'};% list of numerical values (to transform in strings) ListParamValue={'CheckFmin2','CheckF3','CheckF4'}; ListParamString={'ref_fix_1'}; fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) end end %% Patch param option={'Patch1','Patch2'}; for ichoice=1:2 if isfield(Data,[option{ichoice} '_FieldSmooth']) ListParamNum={'FieldSmooth','MaxDiff','SubDomainSize'};% list of numerical values (to transform in strings) ListParamValue={}; ListParamString={}; fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) end end %------------------------------------------------------------------------ % --- fill a panel of civ_input with the parameters retrieved from an input Civ file %------------------------------------------------------------------------ function fill_panel(Data,handles,panel,ListParamNum,ListParamValue,ListParamString) children=get(handles.(panel),'children');%handles of the children of the input GUI with handle 'GUI_handle' handles_panel=[]; for ichild=1:numel(children) if ~isempty(get(children(ichild),'tag')) handles_panel.(get(children(ichild),'tag'))=children(ichild); end end for ilist=1:numel(ListParamNum) ParamName=ListParamNum{ilist}; CivParamName=[panel '_' ParamName]; if isfield(Data,CivParamName) for icoord=1:numel(Data.(CivParamName)) if numel(Data.(CivParamName))>1 Tag=['num_' ParamName '_' num2str(icoord)]; else Tag=['num_' ParamName]; end if isfield(handles_panel,Tag) set(handles_panel.(Tag),'String',num2str(Data.(CivParamName)(icoord))) set(handles_panel.(Tag),'Visible','on') end end end end for ilist=1:numel(ListParamValue) ParamName=ListParamValue{ilist}; CivParamName=[panel '_' ParamName]; if strcmp(ParamName,'CorrSmooth') ParamName=['num_' ParamName]; end if isfield(Data,CivParamName) if isfield(handles_panel,ParamName) set(handles_panel.(ParamName),'Value',Data.(CivParamName)) end end end for ilist=1:numel(ListParamString) ParamName=ListParamString{ilist}; CivParamName=[panel '_' ParamName]; if isfield(Data,CivParamName) if isfield(handles_panel,ParamName) set(handles_panel.(ParamName),'String',Data.(CivParamName)) end end end %------------------------------------------------------------------------ % --- Executes on button press in ImportParam. %------------------------------------------------------------------------ function ImportParam_Callback(hObject, eventdata, handles) hseries=findobj(allchild(0),'Tag','series'); hhseries=guidata(hseries); InputTable=get(hhseries.InputTable,'Data');% read the input file(s) table in the GUI series oldfile=InputTable{1,1}; if isempty(oldfile) % use a file name stored in prefdir dir_perso=prefdir; profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); if exist(profil_perso,'file') h=load (profil_perso); if isfield(h,'RootPath') && ischar(h.RootPath) oldfile=h.RootPath; end end end filexml=uigetfile_uvmat('pick a xml parameter file for civ',oldfile,'.xml');% get the xml file containing processing parameters %proceed only if a file has been introduced by the browser if ~isempty(filexml) Param=xml2struct(filexml);% read the input xml file as a Matlab structure % Param.Action.RUN=0; %desactivate the input RUN=1 if ~isfield(Param,'InputTable')||~isfield(Param,'IndexRange') msgbox_uvmat('ERROR','invalid config file: open a file in a folder ''/0_XML''') return end check_input=0; if isfield(Param,'ActionInput') if isfield(Param.ActionInput,'Program')&& strcmp(Param.ActionInput.Program,'civ_series') fill_GUI(Param.ActionInput,handles.civ_input)% fill the elements of the GUI series with the input parameters set(handles.ConfigSource,'String',filexml) check_input=1; update_CivOptions(handles,0) end end if ~check_input msgbox_uvmat('ERROR','invalid config file (not for civ_series') return end end % --- Executes on selection change in CheckCiv3. function CheckCiv3_Callback(hObject, eventdata, handles) %------------------------------------------------------------------------ % --- Executes on key press with selection of a uicontrol %------------------------------------------------------------------------ function keyboard_callback(hObject,eventdata,handles) ListExclude={'CheckCiv1','CheckFix1','CheckPatch1','CheckCiv2','CheckFix2','CheckPatch2','ref_i'}; if isempty(find(strcmp(get(gco,'Tag'),ListExclude),1))% if the selected uicontrol is not in the Exclude list set(handles.ConfigSource,'String','NEW')% indicate that the configuration is new set(handles.OK,'BackgroundColor',[1 0 1])% drawnow end