source: trunk/src/series/time_series.m @ 44

Last change on this file since 44 was 44, checked in by gostiaux, 11 years ago

improve use of movies

File size: 25.3 KB
Line 
1function GUI_input=time_series(num_i1,num_i2,num_j1,num_j2,Series)
2%----------------------------------------------------------------------
3% --- make a time series analysis
4%----------------------------------------------------------------------
5%INPUT:
6%num_i1: series of first indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ)
7%num_i2: series of second indices i (given from the series interface as first_i:incr_i:last_i, mode and list_pair_civ)
8%num_j1: series of first indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ )
9%num_j2: series of second indices j (given from the series interface as first_j:incr_j:last_j, mode and list_pair_civ)
10%OTHER INPUTS given by the structure Series
11
12%requests for the visibility of input windows in the GUI series  (activated directly by the selection in the menu ACTION)
13if ~exist('num_i1','var')
14    GUI_input={'RootPath';'two';...%nbre of possible input series (options 'on'/'two'/'many', default:'one')
15        'SubDir';'on';... % subdirectory of derived files (PIV fields), ('on' by default)
16        'RootFile';'on';... %root input file name ('on' by default)
17        'FileExt';'on';... %input file extension ('on' by default)
18        'NomType';'on';...%type of file indexing ('on' by default)
19        'NbSlice';'on'; ...%nbre of slices ('off' by default)
20        'VelTypeMenu';'two';...% menu for selecting the velocity type (civ1,..) options 'off'/'one'/'two', 'off' by default)
21        'FieldMenu';'two';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
22        'CoordType';'on';...%can use a transform function 'off' by default
23        'GetObject';'on';...%can use projection object ,'off' by default
24        %'GetMask';'on'...%can use mask option   ,'off' by default
25        %'PARAMETER'; options: name of the user defined parameter',repeat a line for each parameter
26               ''};
27    return %exit the function
28end
29
30%------------------------------------------------------
31hseries=guidata(Series.hseries);%handles in the GUI series
32WaitbarPos=get(hseries.waitbar_frame,'Position'); %position of the waitbar frame
33
34%projection object
35test_object=get(hseries.GetObject,'Value');
36if test_object
37    hset_object=findobj(allchild(0),'Name','set_object');
38    ProjObject=read_set_object(guidata(hset_object));
39    %answeryes=questdlg({['field series projected on ' Series.ProjObject.Style]});
40    answeryes=msgbox_uvmat('INPUT_Y-N',['field series projected on ' ProjObject.Style]);
41    if ~isequal(answeryes,'Yes')
42        return
43    end
44else
45    msgbox_uvmat('ERROR','a projection object is needed');
46    return
47end
48
49% root names
50if iscell(Series.RootPath)
51    RootPath=Series.RootPath;
52    RootFile=Series.RootFile;
53    SubDir=Series.SubDir;
54    FileExt=Series.FileExt;
55    NomType=Series.NomType;
56else
57    RootPath={Series.RootPath};
58    RootFile={Series.RootFile};
59    SubDir={Series.SubDir};
60    FileExt={Series.FileExt};
61    NomType={Series.NomType};
62    num_i1={num_i1};
63    num_i2={num_i2};
64    num_j1={num_j1};
65    num_j2={num_j2};
66end
67ext=FileExt{1};
68form=imformats(ext([2:end]));%test valid Matlab image formats
69testima=0;
70if ~isempty(form)||isequal(lower(ext),'.avi')
71    testima=1;
72end
73nbview=length(RootPath);%number of series (1 or 2)
74nbfield=size(num_i1{1},1)*size(num_i1{1},2); %number of fields in the time series
75
76%Number of input series: this function  accepts only a single input file series
77nbview=length(RootPath);
78if nbview==2
79    %TODO: choose between difference and two series
80elseif nbview>2  % TODO: make multiple series
81%     RootPath=RootPath(1:2);
82%     set(hseries.RootPath,'String',RootPath)
83%     SubDir=SubDir(1:2);
84%     set(hseries.SubDir,'String',SubDir)
85%     RootFile=RootFile(1:2);
86%     set(hseries.RootFile,'String',RootFile)
87%     NomType=NomType(1:2);
88%     %set(hseries.NomType,'String',NomType)
89%     FileExt=FileExt(1:2);
90%     set(hseries.FileExt,'String',FileExt)
91%     nbview=2;
92end
93
94%determine image type
95hhh=which('mmreader');
96for iview=1:nbview
97    if isequal(FileExt{iview},'.nc')||isequal(FileExt{iview},'.cdf')
98        FileType{iview}='netcdf';
99    elseif isequal(lower(FileExt{iview}),'.avi')
100        if ~isequal(hhh,'')&& mmreader.isPlatformSupported()
101            MovieObject{iview}=mmreader(fullfile(RootPath{iview},[RootFile{iview} FileExt{iview}]));
102            FileType{iview}='movie';
103        else
104            FileType{iview}='avi';
105        end
106    elseif isequal(lower(FileExt{iview}),'.vol')
107        FileType{iview}='vol';
108    else
109       form=imformats(FileExt{iview}(2:end));
110       if ~isempty(form)% if the extension corresponds to an image format recognized by Matlab
111           if isequal(NomType{iview},'*');
112               FileType{iview}='multimage';
113           else
114               FileType{iview}='image';
115           end
116       end
117    end
118end
119filebase{1}=fullfile(RootPath{1},RootFile{1});
120
121% number of slices
122NbSlice=str2num(get(hseries.NbSlice,'String'));
123if isempty(NbSlice)
124    NbSlice=1;
125end
126NbSlice_name=num2str(NbSlice);
127
128% Field and velocity type (the same for the two views)
129if isfield(Series,'Field')
130    FieldName=Series.Field;%the same set of fields for all views
131else
132    FieldName={''};
133end
134if isequal(FieldName,{'get_field...'})
135    hget_field=findobj(allchild(0),'name','get_field');%find the get_field... GUI
136    if numel(hget_field)>1
137        delete(hget_field(2:end)) % delete multiple occurerence of the GUI get_fioeld
138    elseif isempty(hget_field)
139       filename=name_generator(filebase{1},num_i1{1}(1),num_j1{1}(1),FileExt{1},NomType{1},1,num_i2{1}(1),num_j2{1}(1),SubDir{1});
140       idetect(iview)=exist(filename,'file');
141       hget_field=get_field(filename);
142       return
143    end
144    %hhget_field=guidata(hget_field);%handles of GUI elements in get_field
145    SubField=read_get_field(hget_field) %read the names of the variables to plot in the get_field GUI
146    if isempty(SubField)
147        delete(hget_field)
148       filename=name_generator(filebase{1},num_i1{1}(1),num_j1{1}(1),FileExt{1},NomType{1},1,num_i2{1}(1),num_j2{1}(1),SubDir{1});
149        hget_field=get_field(filename);
150        SubField=read_get_field(hget_field); %read the names of the variables to plot in the get_field GUI
151    end
152%     if isequal(get(hhget_field.menu_coord,'Visible'),'on')
153%         list_transform=get(hhget_field.menu_coord,'String');
154%         val_list=get(hhget_field.menu_coord,'Value');
155%         transform=list_transform{val_list};
156%     end
157end
158
159%detect whether the two files are 'images' or 'netcdf'
160% testima=0;
161% testvol=0;
162testcivx=0;
163% testnc=0;
164FileExt=get(hseries.FileExt,'String');
165% for iview=1:nbview
166%      ext=FileExt{iview};
167%      form=imformats(ext([2:end]));
168%      if isequal(lower(ext),'.vol')
169%          testvol=testvol+1;
170%      elseif ~isempty(form)||isequal(lower(ext),'.avi')% if the extension corresponds to an image format recognized by Matlab
171%          testima=testima+1;
172%      elseif isequal(ext,'.nc')
173%          testnc=testnc+1;
174%      end
175% end
176% if testvol
177%     msgbox_uvmat('ERROR','volume images not implemented yet')
178%     return
179% end
180% if testnc~=nbview && testima~=nbview && testvol~=nbview
181%     msgbox_uvmat('need a set of images or a set of netcdf files with the same fields as input','ERROR')
182%     return
183% end
184if ~isequal(FieldName,{'get_field...'})
185    testcivx=isequal(FileType{1},'netcdf');
186end
187
188% Root name of output files (TO GENERALISE FOR TWO INPUT SERIES)
189% filebasesub=fullfile(RootPath{1},RootFile{1});
190% if NbSlice==1
191%     filebase_out=[filebasesub '_time'];
192% else
193%     filebase_out=[filebasesub '_' NbSlice_name 'mtim'];
194%     increment=num_i1{1}(2)-num_i1{1}(1);
195%     if ~isequal(increment,1) % if an increment is set
196%         answeryes=msgbox_uvmat('INPUT_Y-N',['will take time series in ' num2str(NbSlice) 'slices with increment = ' num2str(increment) '!']);
197%     else   
198%         answeryes=msgbox_uvmat('INPUT_Y-N',{['will take time series in ' num2str(NbSlice) ' slices'];['results stored as files ' filebase_out ' ...']});
199%     end
200%     if ~isequal(answeryes,'Yes')
201%         return
202%     end
203% end
204VelType_str=get(hseries.VelTypeMenu,'String');
205VelType_val=get(hseries.VelTypeMenu,'Value');
206VelType{1}=VelType_str{VelType_val};
207if nbview==2
208    VelType_str=get(hseries.VelTypeMenu_1,'String');
209    VelType_val=get(hseries.VelTypeMenu_1,'Value');
210    VelType{2}=VelType_str{VelType_val};
211end
212
213%Calibration data and timing: read the ImaDoc files
214mode=''; %default
215timecell={};
216XmlData={};
217itime=0;
218NbSlice_calib={};
219for iview=1:nbview%Loop on views
220    XmlData{iview}=[];%default
221    filebase{iview}=fullfile(RootPath{iview},RootFile{iview});
222    if exist([filebase{iview} '.xml'],'file')
223        [XmlData{iview},error]=imadoc2struct([filebase{iview} '.xml']);
224        if isfield(XmlData{iview},'Time')
225            itime=itime+1;
226            timecell{itime}=XmlData{iview}.Time;
227        end
228        if isfield(XmlData{iview},'GeometryCalib') && isfield(XmlData{iview}.GeometryCalib,'SliceCoord')
229            NbSlice_calib{iview}=size(XmlData{iview}.GeometryCalib.SliceCoord,1);%nbre of slices for Zindex in phys transform
230            if ~isequal(NbSlice_calib{iview},NbSlice_calib{1})
231                msgbox_uvmat('WARNING','inconsistent number of Z indices for the field series');
232            end
233        end
234    elseif exist([filebase{iview} '.civ'],'file')
235        [error,time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([filebase{iview} '.civ']);
236        itime=itime+1;
237        timecell{itime}=time;
238        XmlData{iview}.Time=time;
239        GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0];
240        GeometryCalib.Tx=0;
241        GeometryCalib.Ty=0;
242        GeometryCalib.Tz=1;
243        GeometryCalib.dpx=1;
244        GeometryCalib.dpy=1;
245        GeometryCalib.sx=1;
246        GeometryCalib.Cx=0;
247        GeometryCalib.Cy=0;
248        GeometryCalib.f=1;
249        GeometryCalib.kappa1=0;
250        GeometryCalib.CoordUnit='cm';
251        XmlData{iview}.GeometryCalib=GeometryCalib;
252        if error==1
253            msgbox_uvmat('WARNING','inconsistent number of fields in the .civ file');
254        end
255    end
256end
257
258%check coincidence in time
259multitime=0;
260if length(timecell)==0
261    time=[];
262elseif length(timecell)==1
263    time=timecell{1};
264elseif length(timecell)>1
265    multitime=1;
266    for icell=1:length(timecell)
267        if ~isequal(size(timecell{icell}),size(timecell{1}))
268            msgbox_uvmat('WARNING','inconsistent time array dimensions in ImaDoc fields, the time for the first series is used')
269            time=timecell{1};
270            multitime=0;
271            break
272        end
273    end
274end
275if multitime
276    for icell=1:length(timecell)
277        time(icell,:,:)=timecell{icell};
278    end
279    diff_time=max(max(diff(time)));
280    if diff_time>0
281        msgbox_uvmat('WARNING',['times of series differ by more than ' num2str(diff_time)])
282    end   
283end
284if size(time,2) < num_i2{1}(end) || size(time,3) < num_j2{1}(end)% ime array absent or too short in ImaDoc xml file'
285    time=[];
286end
287
288% Root name of output files (TO GENERALISE FOR TWO INPUT SERIES)
289subdir_result='time_series';
290% filebasesub=fullfile(RootPath{1},subdir_result,RootFile{1});
291% if isempty(SubDir{1}) % create a subdirectory '/aver_stat'
292%     subdir_result='aver_stat';
293%     filebasemean=fullfile(RootPath{1},subdir_result);
294if ~exist(fullfile(RootPath{1},subdir_result),'dir')
295    dircur=pwd; %record current working directory
296    cd(RootPath{1})% goes to the iamge directory
297    [m1,m2,m3]=mkdir(subdir_result);
298    if ~isequal(m2,'')
299         msgbox_uvmat('CONFIRMATION',m2);%error message for directory creation
300    end
301    cd(dircur) %back to the initial working directory
302end
303filebase_out=filebase{1};
304NomTypeOut=nomtype2pair(NomType{1},num_i2{end}(end)-num_i1{1}(1),num_j2{end}(end)-num_j1{1}(1));
305
306% coordinate transform or other user defined transform
307transform_fct=[];%default
308if isfield(Series,'transform_fct')
309    transform_fct=Series.transform_fct;
310end
311
312% to update:
313VelType_str=get(hseries.VelTypeMenu,'String');
314VelType_val=get(hseries.VelTypeMenu,'Value');
315VelType{1}=VelType_str{VelType_val};
316if nbview==2
317    VelType_str=get(hseries.VelTypeMenu_1,'String');
318    VelType_val=get(hseries.VelTypeMenu_1,'Value');
319    VelType{2}=VelType_str{VelType_val};
320end
321
322%LOOP ON SLICES
323for i_slice=1:NbSlice
324     dt=[];
325     nbmissing=0; %number of undetected files
326     nbfiles=0;
327    %%%%%%%%%%%%%%%%%%%%%%%%%%%%LOOP ON FIELDS IN  A SLICE
328    for ifile=i_slice:NbSlice:nbfield 
329        stopstate=get(hseries.RUN,'BusyAction');
330        if isequal(stopstate,'queue')% enable STOP command
331             update_waitbar(hseries.waitbar,WaitbarPos,ifile/nbfield)
332             for iview=1:nbview
333                filename=...
334                           name_generator(filebase{iview},num_i1{iview}(ifile),num_j1{iview}(ifile),FileExt{iview},NomType{iview},1,num_i2{iview}(ifile),num_j2{iview}(ifile),SubDir{iview});
335                idetect(iview)=exist(filename,'file');
336                Data{iview}=[]; %default     
337                if ~isequal(FileType{iview},'netcdf')               
338                    Data{iview}.ListVarName={'A'};
339                    Data{iview}.AName='image';
340                    switch FileType{iview}
341                        case 'movie'
342                            A=read(MovieObject{iview},num_i1{iview}(ifile));
343                        case 'avi'
344                            mov=aviread(filename,num_i1{iview}(ifile));
345                            A=frame2im(mov(1));
346                        case 'vol'
347                            A=imread(filename);
348                        case 'multimage'
349                            A=imread(filename,num_i1{iview}(ifile));
350                        case 'image'
351                            A=imread(filename);
352                    end
353                    Data{iview}.ListVarName={'coord_y','coord_x','A'}; %
354                    npy=size(A,1);
355                    npx=size(A,2);
356                    nbcolor=size(A,3);
357                    if nbcolor==3
358                         Data{iview}.VarDimName={'coord_y','coord_x',{'coord_y','coord_x','rgb'}};
359                    else
360                         Data{iview}.VarDimName={'coord_y','coord_x',{'coord_y','coord_x'}};
361                    end 
362                    Data{iview}.coord_y=[npy-0.5 0.5];
363                    Data{iview}.coord_x=[0.5 npx-0.5];
364                    Data{iview}.A=double(A);
365                    Data{iview}.CoordType='px';
366                elseif testcivx
367                    [Data{iview},VelTypeOut]=read_civxdata(filename,FieldName,VelType);
368                else
369                    [Data{iview},var_detect]=nc2struct(filename,SubField.ListVarName); %read the corresponding input data               
370                    Data{iview}.VarAttribute=SubField.VarAttribute;
371                end
372                if ~isempty(NbSlice_calib)  % z index
373                    Data{iview}.ZIndex=mod(num_i1{iview}(ifile)-1,NbSlice_calib{1})+1;
374                end
375             end
376             
377             % coordinate transform (or other user defined transform)
378            if ~isempty(transform_fct)
379                 % z index
380                if ~isempty(NbSlice_calib)
381                    Data{iview}.ZIndex=mod(num_i1{iview}(ifile)-1,NbSlice_calib{1})+1;%Zindex for phys transform
382                end
383                if nbview==2
384                    [Data{1},Data{2}]=transform_fct(Data{1},XmlData{1},Data{2},XmlData{2});
385                    if isempty(Data{2})
386                        Data(2)=[];
387                    end
388                else
389                    Data{1}=transform_fct(Data{1},XmlData);
390                end
391            end     
392            if testcivx
393                    Data{iview}=calc_field(FieldName,Data{iview});%calculate field (vort..)
394            end
395            if length(Data)==2
396                [Field,errormsg]=sub_field(Data{1},Data{2}); %substract the two fields
397                if ~isempty(errormsg)
398                    msgbox_uvmat('ERROR',['error in time_series/sub_field:' errormsg])
399                    return
400                end
401            else
402                Field=Data{1};
403            end
404            if test_object
405                [Field,errormsg]=proj_field(Field,ProjObject);
406                if ~isempty(errormsg)
407                    msgbox_uvmat('ERROR',['error in time_series/proj_field:' errormsg])
408                    return
409                end
410            end
411            if min(idetect)>=1% the input file(s) have been detected         
412                nbfiles=nbfiles+1;
413                if nbfiles==1 %first field: initiate the time series
414                    RecordData=Field;%default
415                    RecordData.NbDim=Field.NbDim+1; %add the time dimension for plots         
416                    nbvar=length(Field.ListVarName);
417                    if nbvar==0
418                        msgbox_uvmat('ERROR','no input variable selected in get_field')
419                        return
420                    end
421                    testsum=2*ones(1,nbvar);%initiate flag for action on each variable
422                    indexfalse=0;
423                    CoordName={};
424                    indexremove=[];
425                    if isfield(Field,'VarAttribute') % look for coordinate and flag variables   
426                        for ivar=1:nbvar
427                            if length(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'Role')
428                                var_role=Field.VarAttribute{ivar}.Role;%'role' of the variable
429                                if isequal(var_role,'errorflag')
430                                    msgbox_uvmat('ERROR','do not handle error flags in time series')
431                                    return                                               
432                                end
433                                if isequal(var_role,'warnflag')                       
434                                    testsum(ivar)=0;  % not recorded variable
435                                    eval(['RecordData=rmfield(RecordData,''' Field.ListVarName{ivar} ''');']);%remove variable
436                                end                 
437                                if isequal(var_role,'coord_x')| isequal(var_role,'coord_y')|...
438                                    isequal(var_role,'coord_z')|isequal(var_role,'coord')
439                                    testsum(ivar)=1; %constant coordinates, record without time evolution
440                                end
441                                % check whether the variable ivar is a dimension variable
442                                DimCell=Field.VarDimName{ivar};
443                                if ischar(DimCell)
444                                    DimCell={DimCell};
445                                end
446                                if numel(DimCell)==1 && isequal(Field.ListVarName{ivar},DimCell{1})%detect dimension variables
447                                   testsum(ivar)=1;
448                                end
449                            end
450                        end
451                    end
452                    for ivar=1:nbvar
453                        if testsum(ivar)==2                     
454                            eval(['RecordData.' Field.ListVarName{ivar} '=[];'])
455                        end
456                    end
457                    RecordData.ListVarName=[{'Time'} RecordData.ListVarName];
458                end
459                for ivar=1:length(Field.ListVarName)
460                    VarName=Field.ListVarName{ivar};
461                    eval(['VarVal=Field.' VarName ';']);
462                    if testsum(ivar)==2% test for recorded variable
463                        eval(['VarVal=Field.' VarName ';']);
464                        if isequal(ProjObject.ProjMode,'inside')% take the average in the domain for 'inside' mode
465                            if isempty(VarVal)
466                                msgbox_uvmat('ERROR',['empty result at frame index ' num2str(num_i1{iview}(ifile))])
467                                return                             
468                            end
469                            VarVal=mean(VarVal,1);
470                        end
471                        VarVal=shiftdim(VarVal,-1); %shift dimension
472                        eval(['RecordData.' VarName '=cat(1,RecordData.' VarName ',VarVal);']);%concanete the current field to the time series   
473                    elseif testsum(ivar)==1% variable representing fixed coordinates
474                        eval(['VarInit=RecordData.' VarName ';']);
475                        if ~isequal(VarVal,VarInit)
476                            msgbox_uvmat('ERROR',['time series requires constant coordinates ' VarName])
477                            return
478                        end
479                    end                 
480                end
481                % time:
482                if isempty(time)% time read in ncfiles
483                   if isfield(Field,'Time')
484                       RecordData.Time(nbfiles,1)=Field.Time;
485                   else
486                       RecordData.Time(nbfiles,1)=nbfiles;%default
487                   end
488                else % time from ImaDoc prevails
489                    RecordData.Time(nbfiles,1)=(time(1,num_i1{1}(ifile),num_j1{1}(ifile))+time(end,num_i2{end}(ifile),num_j2{end}(ifile)))/2;
490                end
491            else
492                nbmissing=nbmissing+1;
493            end
494        end
495    end
496    %remove time for global attributes if exists
497    for iattr=1:numel(RecordData.ListGlobalAttribute)
498        if strcmp(RecordData.ListGlobalAttribute{iattr},'Time')
499            RecordData.ListGlobalAttribute(iattr)=[];
500            break
501        end
502    end
503    for ivar=1:numel(RecordData.ListVarName)
504        VarName=RecordData.ListVarName{ivar};
505        eval(['RecordData.' VarName '=squeeze(RecordData.' VarName ');']) %remove singletons
506    end
507        % add time dimension and update VarDimIndex:
508   %if ~isequal(Series.ProjObject.ProjMode,'inside')% take the average in the domain for 'inside' mode
509        for ivar=1:length(Field.ListVarName)
510%              vardimindex=Field.VarDimIndex{ivar};% array of dimension indices for variable VarIndex(ivar)
511             DimCell=Field.VarDimName(ivar);
512             if testsum(ivar)==2%variable used as time series
513%                  RecordData.VarDimIndex{ivar}=[1 vardimindex+1];
514                  RecordData.VarDimName{ivar}=[{'Time'} DimCell];
515             elseif testsum(ivar)==1
516%                  RecordData.VarDimIndex{ivar}=[vardimindex+1];
517                 RecordData.VarDimName{ivar}=DimCell;
518             end
519        end
520   % end
521    indexremove=find(~testsum);
522    if ~isempty(indexremove)
523        RecordData.ListVarName(1+indexremove)=[];
524        RecordData.VarDimName(indexremove)=[];
525        if isfield(RecordData,'Role')&~isempty(RecordData.Role{1})%generaliser aus autres attributs
526            RecordData.Role(1+indexremove)=[];
527        end
528    end
529    %RecordData.VarDimIndex=[{[1]} RecordData.VarDimIndex]; %time dimension
530    %shift variable attributes
531    if isfield(RecordData,'VarAttribute')
532        RecordData.VarAttribute=[{[]} RecordData.VarAttribute];
533    end
534    RecordData.VarDimName=[{'Time'} RecordData.VarDimName];
535    RecordData.Action=Series.Action;%name of the processing programme
536    %name of result file
537    [filemean]=...
538               name_generator(filebase_out,num_i1{1}(i_slice),num_j1{1}(i_slice),'.nc','_i1-i2_j1-j2',1,num_i2{end}(ifile),num_j2{end}(ifile),SubDir{1});
539    errormsg=struct2nc(filemean,RecordData); %save result file
540    if isempty(errormsg)
541        display([filemean ' written'])
542    else
543        msgbox_uvmat('ERROR',['error in Series/struct2nc' errormsg])
544    end
545end
546figure
547haxes=axes;
548
549plot_field(RecordData,haxes)
550hget_field=findobj(allchild(0),'name','get_field');
551if ~isempty(hget_field)
552    delete(hget_field)
553end
554get_field(filemean,RecordData)
555   
556%-----------------------------------------------------------------------
557% --- Executes on selection change in CoordType.
558function CoordType_Callback(hObject, eventdata, handles)
559menu_str=get(handles.CoordType,'String');
560ind_coord=get(handles.CoordType,'Value');
561coord_option=menu_str{ind_coord};
562if isequal(coord_option,'more...');
563    fct_name='';
564    if exist('./TMP/current_usr_fct.mat','file')% if a file is found
565        h=load('./TMP/current_usr_fct.mat');
566        if isfield(h,'fct_name');
567            fct_name=h.fct_name;
568        end
569    end
570    prompt = {'Enter the name of the transform function'};
571    dlg_title = 'user defined transform';
572    num_lines= 1;
573    [FileName, PathName, filterindex] = uigetfile( ...
574       {'*.m', ' (*.m)';
575        '*.m',  '.m files '; ...
576        '*.*', 'All Files (*.*)'}, ...
577        'Pick a file', fct_name);
578    fct_name=fullfile(PathName,FileName);
579    addpath(PathName);%add the path to the selected fct
580    [errormsg,date_str]=check_functions;%check whether new functions can oversed the uvmat package A UTILISER
581    if ~exist(fct_name,'file')
582           warndlg(['image procesing fct ' fct_name ' not found'])
583    else
584        transform=FileName(1:end-2);%
585        update_menu(handles.CoordType,transform)%add the selected fct to the menu
586  %      set(handles.mouse_coord,'String',menu([1:end-1])')%update the mouse coord menu
587      %save ('./TMP/current_usr_fct.mat','fct_name');
588    end   
589end
590ind_coord=get(handles.CoordType,'Value');   
591
592%---------------------------------------------------------------------
593% % --- Executes on selection change in ProjObject.
594% function ProjObject_Callback(hObject, eventdata, handles)
595%
596% list_object=get(handles.ProjObject,'String');
597% index=get(handles.ProjObject,'Value');
598% hseries=get(handles.ProjObject,'Parent');
599% SeriesData=get(hseries,'UserData');
600% Obj=SeriesData.ProjObject{index};
601% [SeriesData.hset_object,SeriesData.sethandles]=set_object(SeriesData.ProjObject{index});
602% set(hseries,'UserData',SeriesData);
603
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