1 | %'time_series': extract a time series after projection on an object (points , line..) |
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2 | % this function can be used as a template for applying a global operation on a series of input fields |
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3 | %------------------------------------------------------------------------ |
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4 | % function GUI_input=time_series(Param) |
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5 | % |
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6 | %%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%% |
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7 | % |
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8 | %OUTPUT |
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9 | % ParamOut: sets options in the GUI series.fig needed for the function |
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10 | % |
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11 | %INPUT: |
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12 | % In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series. |
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13 | % In batch mode, Param is the name of the corresponding xml file containing the same information |
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14 | % when Param.Action.RUN=0 (as activated when the current Action is selected |
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15 | % in series), the function ouput paramOut set the activation of the needed GUI elements |
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16 | % |
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17 | % Param contains the elements:(use the menu bar command 'export/GUI config' in series to |
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18 | % see the current structure Param) |
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19 | % .InputTable: cell of input file names, (several lines for multiple input) |
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20 | % each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension} |
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21 | % .OutputSubDir: name of the subdirectory for data outputs |
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22 | % .OutputDirExt: directory extension for data outputs |
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23 | % .Action: .ActionName: name of the current activated function |
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24 | % .ActionPath: path of the current activated function |
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25 | % .ActionExt: fct extension ('.m', Matlab fct, '.sh', compiled Matlab fct |
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26 | % .RUN =0 for GUI input, =1 for function activation |
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27 | % .RunMode='local','background', 'cluster': type of function use |
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28 | % |
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29 | % .IndexRange: set the file or frame indices on which the action must be performed |
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30 | % .FieldTransform: .TransformName: name of the selected transform function |
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31 | % .TransformPath: path of the selected transform function |
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32 | % .InputFields: sub structure describing the input fields withfields |
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33 | % .FieldName: name(s) of the field |
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34 | % .VelType: velocity type |
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35 | % .FieldName_1: name of the second field in case of two input series |
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36 | % .VelType_1: velocity type of the second field in case of two input series |
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37 | % .Coord_y: name of y coordinate variable |
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38 | % .Coord_x: name of x coordinate variable |
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39 | % .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object) |
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40 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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41 | |
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42 | %======================================================================= |
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43 | % Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France |
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44 | % http://www.legi.grenoble-inp.fr |
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45 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
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46 | % |
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47 | % This file is part of the toolbox UVMAT. |
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48 | % |
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49 | % UVMAT is free software; you can redistribute it and/or modify |
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50 | % it under the terms of the GNU General Public License as published |
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51 | % by the Free Software Foundation; either version 2 of the license, |
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52 | % or (at your option) any later version. |
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53 | % |
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54 | % UVMAT is distributed in the hope that it will be useful, |
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55 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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56 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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57 | % GNU General Public License (see LICENSE.txt) for more details. |
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58 | %======================================================================= |
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59 | |
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60 | function ParamOut=time_series(Param) |
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61 | |
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62 | %% set the input elements needed on the GUI series when the action is selected in the menu ActionName or InputTable refreshed |
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63 | if isstruct(Param) && isequal(Param.Action.RUN,0)% function activated from the GUI series but not RUN |
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64 | ParamOut.AllowInputSort='off';% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default) |
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65 | ParamOut.WholeIndexRange='off';% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default) |
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66 | ParamOut.NbSlice='on'; %nbre of slices ('off' by default) |
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67 | ParamOut.VelType='two';% menu for selecting the velocity type (options 'off'/'one'/'two', 'off' by default) |
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68 | ParamOut.FieldName='two';% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
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69 | ParamOut.FieldTransform = 'on';%can use a transform function |
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70 | ParamOut.TransformPath=fullfile(fileparts(which('uvmat')),'transform_field');% path to transform functions (needed for compilation only) |
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71 | ParamOut.ProjObject='on';%can use projection object(option 'off'/'on', |
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72 | ParamOut.Mask='off';%can use mask option (option 'off'/'on', 'off' by default) |
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73 | ParamOut.OutputDirExt='.tseries';%set the output dir extension |
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74 | ParamOut.OutputFileMode='NbSlice';% '=NbInput': 1 output file per input file index, '=NbInput_i': 1 file per input file index i, '=NbSlice': 1 file per slice |
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75 | % check the existence of the first file in the series |
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76 | first_j=[]; |
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77 | if isfield(Param.IndexRange,'first_j'); first_j=Param.IndexRange.first_j; end |
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78 | last_j=[]; |
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79 | if isfield(Param.IndexRange,'last_j'); last_j=Param.IndexRange.last_j; end |
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80 | PairString=''; |
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81 | if isfield(Param.IndexRange,'PairString'); PairString=Param.IndexRange.PairString; end |
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82 | [i1,i2,j1,j2] = get_file_index(Param.IndexRange.first_i,first_j,PairString); |
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83 | FirstFileName=fullfile_uvmat(Param.InputTable{1,1},Param.InputTable{1,2},Param.InputTable{1,3},... |
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84 | Param.InputTable{1,5},Param.InputTable{1,4},i1,i2,j1,j2); |
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85 | if ~exist(FirstFileName,'file') |
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86 | msgbox_uvmat('WARNING',['the first input file ' FirstFileName ' does not exist']) |
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87 | elseif isequal(size(Param.InputTable,1),1) && ~isfield(Param,'ProjObject') |
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88 | msgbox_uvmat('WARNING','a projection object may be needed to select points for the time_series') |
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89 | end |
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90 | return |
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91 | end |
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92 | |
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93 | %%%%%%%%%%%% STANDARD PART %%%%%%%%%%%% |
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94 | ParamOut=[]; %default output |
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95 | %% read input parameters from an xml file if input is a file name (batch mode) |
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96 | checkrun=1; |
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97 | if ischar(Param) |
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98 | Param=xml2struct(Param);% read Param as input file (batch case) |
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99 | checkrun=0; |
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100 | end |
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101 | hseries=findobj(allchild(0),'Tag','series'); |
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102 | RUNHandle=findobj(hseries,'Tag','RUN');%handle of RUN button in GUI series |
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103 | WaitbarHandle=findobj(hseries,'Tag','Waitbar');%handle of waitbar in GUI series |
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104 | |
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105 | %% define the directory for result file (with path=RootPath{1}) |
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106 | OutputDir=[Param.OutputSubDir Param.OutputDirExt]; |
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107 | |
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108 | %% root input file(s) name, type and index series |
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109 | RootPath=Param.InputTable(:,1); |
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110 | RootFile=Param.InputTable(:,3); |
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111 | SubDir=Param.InputTable(:,2); |
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112 | NomType=Param.InputTable(:,4); |
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113 | FileExt=Param.InputTable(:,5); |
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114 | hdisp=disp_uvmat('WAITING...','checking the file series',checkrun); |
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115 | [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param); |
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116 | if ~isempty(hdisp),delete(hdisp),end; |
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117 | %%%%%%%%%%%% |
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118 | % The cell array filecell is the list of input file names, while |
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119 | % filecell{iview,fileindex}: |
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120 | % iview: line in the table corresponding to a given file series |
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121 | % fileindex: file index within the file series, |
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122 | % i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j |
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123 | % i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices |
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124 | %%%%%%%%%%%% |
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125 | nbview=numel(i1_series);%number of input file series (lines in InputTable) |
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126 | nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices) |
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127 | nbfield_i=size(i1_series{1},2); %nb of fields for the i index |
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128 | nbfield=nbfield_j*nbfield_i; %total number of fields |
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129 | |
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130 | %% determine the file type on each line from the first input file |
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131 | ImageTypeOptions={'image','multimage','mmreader','video'}; |
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132 | NcTypeOptions={'netcdf','civx','civdata'}; |
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133 | FileType=cell(1,nbview); |
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134 | FileInfo=cell(1,nbview); |
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135 | MovieObject=cell(1,nbview); |
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136 | CheckImage=cell(1,nbview); |
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137 | CheckNc=cell(1,nbview); |
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138 | frame_index=cell(1,nbview); |
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139 | for iview=1:nbview |
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140 | if ~exist(filecell{iview,1}','file') |
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141 | disp_uvmat('ERROR',['the first input file ' filecell{iview,1} ' does not exist'],checkrun) |
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142 | return |
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143 | end |
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144 | [FileInfo{iview},MovieObject{iview}]=get_file_info(filecell{iview,1}); |
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145 | FileType{iview}=FileInfo{iview}.FileType; |
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146 | if strcmp(FileType{iview},'civdata')||strcmp(FileType{iview},'civx') |
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147 | if ~isfield(Param.InputFields,'VelType') |
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148 | FileType{iview}='netcdf';% civ data read as usual netcdf files |
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149 | end |
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150 | end |
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151 | CheckImage{iview}=~isempty(find(strcmp(FileType{iview},ImageTypeOptions)));% =1 for images |
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152 | CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files |
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153 | if isempty(j1_series{iview}) |
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154 | frame_index{iview}=i1_series{iview}; |
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155 | else |
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156 | frame_index{iview}=j1_series{iview}; |
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157 | end |
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158 | end |
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159 | |
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160 | %% calibration data and timing: read the ImaDoc files |
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161 | [XmlData,NbSlice_calib,time,errormsg]=read_multimadoc(RootPath,SubDir,RootFile,FileExt,i1_series,i2_series,j1_series,j2_series); |
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162 | if ~isempty(errormsg) |
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163 | disp_uvmat('ERROR',['error in reading xmlfile: ' errormsg],checkrun) |
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164 | return |
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165 | end |
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166 | if size(time,1)>1 |
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167 | diff_time=max(max(diff(time))); |
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168 | if diff_time>0 |
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169 | disp_uvmat('WARNING',['times of series differ by (max) ' num2str(diff_time)],checkrun) |
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170 | end |
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171 | time=time(1,:);% choose the time data from the first sequence |
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172 | end |
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173 | |
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174 | %% coordinate transform or other user defined transform |
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175 | transform_fct=[];%default |
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176 | if isfield(Param,'FieldTransform')&&~isempty(Param.FieldTransform.TransformName) |
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177 | addpath(Param.FieldTransform.TransformPath) |
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178 | transform_fct=str2func(Param.FieldTransform.TransformName); |
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179 | rmpath(Param.FieldTransform.TransformPath) |
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180 | end |
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181 | |
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182 | %%%%%%%%%%%% END STANDARD PART %%%%%%%%%%%% |
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183 | % EDIT FROM HERE |
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184 | |
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185 | %% check the validity of the input file types |
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186 | if ~CheckImage{1}&&~CheckNc{1} |
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187 | disp_uvmat('ERROR',['invalid file type input ' FileType{1}],checkrun) |
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188 | return |
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189 | end |
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190 | if nbview==2 && ~isequal(CheckImage{1},CheckImage{2}) |
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191 | disp_uvmat('ERROR','input must be two image series or two netcdf file series',checkrun) |
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192 | return |
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193 | end |
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194 | |
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195 | %% settings for the output file |
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196 | FileExtOut='.nc';% write result as .nc files for netcdf inputs |
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197 | NomTypeOut=nomtype2pair(NomType{1});% determine the index nomenclature type for the output file |
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198 | first_i=i1_series{1}(1); |
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199 | last_i=i1_series{1}(end); |
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200 | if isempty(j1_series{1})% if there is no second index j |
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201 | first_j=1;last_j=1; |
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202 | else |
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203 | first_j=j1_series{1}(1); |
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204 | last_j=j1_series{1}(end); |
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205 | end |
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206 | |
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207 | %% Set field names and velocity types |
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208 | InputFields{1}=[];%default (case of images) |
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209 | if isfield(Param,'InputFields') |
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210 | InputFields{1}=Param.InputFields; |
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211 | end |
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212 | if nbview==2 |
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213 | InputFields{2}=[];%default (case of images) |
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214 | if isfield(Param,'InputFields') |
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215 | InputFields{2}=Param.InputFields{1};%default |
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216 | if isfield(Param.InputFields,'FieldName_1') |
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217 | InputFields{2}.FieldName=Param.InputFields.FieldName_1; |
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218 | if isfield(Param.InputFields,'VelType_1') |
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219 | InputFields{2}.VelType=Param.InputFields.VelType_1; |
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220 | end |
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221 | end |
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222 | end |
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223 | end |
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224 | |
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225 | %% Initiate output fields |
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226 | %initiate the output structure as a copy of the first input one (reproduce fields) |
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227 | [DataOut,tild,errormsg] = read_field(filecell{1,1},FileType{1},InputFields{1},1); |
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228 | if ~isempty(errormsg) |
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229 | disp_uvmat('ERROR',['error reading ' filecell{1,1} ': ' errormsg],checkrun) |
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230 | return |
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231 | end |
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232 | time_1=[]; |
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233 | if isfield(DataOut,'Time') |
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234 | time_1=DataOut.Time(1); |
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235 | end |
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236 | if CheckNc{iview} |
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237 | if isempty(strcmp('Conventions',DataOut.ListGlobalAttribute)) |
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238 | DataOut.ListGlobalAttribute=['Conventions' DataOut.ListGlobalAttribute]; |
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239 | end |
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240 | DataOut.Conventions='uvmat'; |
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241 | DataOut.ListGlobalAttribute=[DataOut.ListGlobalAttribute {Param.Action}]; |
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242 | ActionKey='Action'; |
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243 | while isfield(DataOut,ActionKey) |
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244 | ActionKey=[ActionKey '_1']; |
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245 | end |
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246 | DataOut.(ActionKey)=Param.Action; |
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247 | DataOut.ListGlobalAttribute=[DataOut.ListGlobalAttribute {ActionKey}]; |
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248 | if isfield(DataOut,'Time') |
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249 | DataOut.ListGlobalAttribute=[DataOut.ListGlobalAttribute {'Time','Time_end'}]; |
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250 | end |
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251 | end |
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252 | |
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253 | nbmissing=0; %number of undetected files |
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254 | % for i_slice=1:NbSlice |
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255 | %index_slice=i_slice:NbSlice:nbfield;% select file indices of the slice |
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256 | nbfile=0; |
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257 | nbmissing=0; |
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258 | |
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259 | %%%%%%%%%%%%%%%% loop on field indices %%%%%%%%%%%%%%%% |
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260 | for index=1:nbfield |
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261 | update_waitbar(WaitbarHandle,index/nbfield) |
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262 | if ~isempty(RUNHandle) && ~strcmp(get(RUNHandle,'BusyAction'),'queue') |
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263 | disp('program stopped by user') |
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264 | break % leave the loop if stop is ordered |
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265 | end |
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266 | Data=cell(1,nbview);%initiate the set Data; |
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267 | nbtime=0; |
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268 | dt=[]; |
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269 | %%%%%%%%%%%%%%%% loop on views (input lines) %%%%%%%%%%%%%%%% |
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270 | for iview=1:nbview |
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271 | % reading input file(s) |
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272 | [Data{iview},tild,errormsg] = read_field(filecell{iview,index},FileType{iview},InputFields{iview},frame_index{iview}(index)); |
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273 | if ~isempty(errormsg) |
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274 | errormsg=['time_series / read_field / ' errormsg]; |
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275 | display(errormsg) |
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276 | break |
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277 | end |
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278 | if ~isempty(NbSlice_calib) |
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279 | Data{iview}.ZIndex=mod(i1_series{iview}(index)-1,NbSlice_calib{iview})+1;%Zindex for phys transform |
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280 | end |
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281 | end |
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282 | if isempty(errormsg) |
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283 | Field=Data{1}; % default input field structure |
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284 | % coordinate transform (or other user defined transform) |
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285 | if ~isempty(transform_fct) |
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286 | switch nargin(transform_fct) |
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287 | case 4 |
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288 | if length(Data)==2 |
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289 | Field=transform_fct(Data{1},XmlData{1},Data{2},XmlData{2}); |
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290 | else |
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291 | Field=transform_fct(Data{1},XmlData{1}); |
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292 | end |
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293 | case 3 |
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294 | if length(Data)==2 |
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295 | Field=transform_fct(Data{1},XmlData{1},Data{2}); |
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296 | else |
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297 | Field=transform_fct(Data{1},XmlData{1}); |
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298 | end |
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299 | case 2 |
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300 | Field=transform_fct(Data{1},XmlData{1}); |
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301 | case 1 |
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302 | Field=transform_fct(Data{1}); |
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303 | end |
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304 | end |
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305 | |
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306 | %field projection on an object |
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307 | if Param.CheckObject |
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308 | % calculate tps coefficients if needed |
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309 | if isfield(Param.ProjObject,'ProjMode')&& strcmp(Param.ProjObject.ProjMode,'interp_tps') |
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310 | Field=tps_coeff_field(Field,check_proj_tps); |
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311 | end |
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312 | [Field,errormsg]=proj_field(Field,Param.ProjObject); |
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313 | if ~isempty(errormsg) |
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314 | msgbox_uvmat('ERROR',['time_series / proj_field / ' errormsg]) |
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315 | return |
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316 | end |
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317 | end |
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318 | nbfile=nbfile+1; |
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319 | |
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320 | % initiate the time series at the first iteration |
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321 | if nbfile==1 |
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322 | % stop program if the first field reading is in error |
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323 | if ~isempty(errormsg) |
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324 | disp_uvmat('ERROR',['time_series / sub_field / ' errormsg],checkrun) |
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325 | return |
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326 | end |
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327 | DataOut=Field;%default |
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328 | % DataOut.NbDim=Field.NbDim+1; %add the time dimension for plots |
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329 | nbvar=length(Field.ListVarName); |
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330 | if nbvar==0 |
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331 | disp_uvmat('ERROR','no input variable selected',checkrun) |
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332 | return |
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333 | end |
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334 | testsum=2*ones(1,nbvar);%initiate flag for action on each variable |
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335 | if isfield(Field,'VarAttribute') % look for coordinate and flag variables |
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336 | for ivar=1:nbvar |
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337 | if length(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'Role') |
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338 | var_role=Field.VarAttribute{ivar}.Role;%'role' of the variable |
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339 | if isequal(var_role,'errorflag') |
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340 | disp_uvmat('ERROR','do not handle error flags in time series',checkrun) |
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341 | return |
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342 | end |
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343 | if isequal(var_role,'warnflag') |
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344 | testsum(ivar)=0; % not recorded variable |
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345 | eval(['DataOut=rmfield(DataOut,''' Field.ListVarName{ivar} ''');']);%remove variable |
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346 | end |
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347 | if strcmp(var_role,'coord_x')||strcmp(var_role,'coord_y')||strcmp(var_role,'coord_z')||strcmp(var_role,'coord') |
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348 | testsum(ivar)=1; %constant coordinates, record without time evolution |
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349 | end |
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350 | end |
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351 | % check whether the variable ivar is a dimension variable |
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352 | DimCell=Field.VarDimName{ivar}; |
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353 | if ischar(DimCell) |
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354 | DimCell={DimCell}; |
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355 | end |
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356 | if numel(DimCell)==1 && isequal(Field.ListVarName{ivar},DimCell{1})%detect dimension variables |
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357 | testsum(ivar)=1; |
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358 | end |
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359 | end |
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360 | end |
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361 | for ivar=1:nbvar |
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362 | if testsum(ivar)==2 |
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363 | eval(['DataOut.' Field.ListVarName{ivar} '=[];']) |
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364 | end |
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365 | end |
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366 | DataOut.ListVarName=[{'Time'} DataOut.ListVarName]; |
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367 | end |
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368 | |
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369 | % add data to the current field |
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370 | for ivar=1:length(Field.ListVarName) |
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371 | VarName=Field.ListVarName{ivar}; |
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372 | VarVal=Field.(VarName); |
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373 | if testsum(ivar)==2% test for recorded variable |
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374 | if isempty(errormsg) |
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375 | if Param.CheckObject && strcmp(Param.ProjObject.ProjMode,'inside')% take the average in the domain for 'inside' projection mode |
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376 | if isempty(VarVal) |
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377 | disp_uvmat('ERROR',['empty result at frame index ' num2str(i1_series{iview}(index))],checkrun) |
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378 | return |
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379 | end |
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380 | VarVal=mean(VarVal,1); |
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381 | end |
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382 | VarVal=shiftdim(VarVal,-1); %shift dimension |
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383 | DataOut.(VarName)=cat(1,DataOut.(VarName),VarVal);%concanete the current field to the time series |
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384 | else |
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385 | DataOut.(VarName)=cat(1,DataOut.(VarName),0);% put each variable to 0 in case of input reading error |
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386 | end |
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387 | elseif testsum(ivar)==1% variable representing fixed coordinates |
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388 | VarInit=DataOut.(VarName); |
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389 | if isempty(errormsg) && ~isequal(VarVal,VarInit) |
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390 | disp_uvmat('ERROR',['time series requires constant coordinates ' VarName ': use projection mode interp'],checkrun) |
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391 | return |
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392 | end |
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393 | end |
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394 | end |
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395 | |
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396 | % record the time: |
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397 | if isempty(time)% time not set by xml filer(s) |
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398 | if isfield(Data{1},'Time') |
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399 | DataOut.Time(nbfile,1)=Field.Time; |
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400 | else |
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401 | DataOut.Time(nbfile,1)=index;%default |
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402 | end |
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403 | else % time from ImaDoc prevails TODO: correct |
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404 | DataOut.Time(nbfile,1)=time(index);% |
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405 | end |
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406 | |
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407 | % record the number of missing input fields |
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408 | if ~isempty(errormsg) |
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409 | nbmissing=nbmissing+1; |
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410 | display(['index=' num2str(index) ':' errormsg]) |
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411 | end |
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412 | end |
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413 | |
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414 | end |
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415 | %%%%%%% END OF LOOP WITHIN A SLICE |
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416 | |
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417 | %remove time for global attributes if exists |
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418 | Time_index=find(strcmp('Time',DataOut.ListGlobalAttribute)); |
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419 | if ~isempty(Time_index) |
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420 | DataOut.ListGlobalAttribute(Time_index)=[]; |
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421 | end |
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422 | DataOut.Conventions='uvmat'; |
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423 | for ivar=1:numel(DataOut.ListVarName) |
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424 | VarName=DataOut.ListVarName{ivar}; |
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425 | eval(['DataOut.' VarName '=squeeze(DataOut.' VarName ');']) %remove singletons |
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426 | end |
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427 | |
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428 | % add time dimension |
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429 | for ivar=1:length(Field.ListVarName) |
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430 | DimCell=Field.VarDimName{ivar}; |
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431 | if ischar(DimCell),DimCell={DimCell};end |
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432 | if testsum(ivar)==2% variable for which time series is calculated |
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433 | DataOut.VarDimName{ivar}=[{'Time'} DimCell]; |
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434 | elseif testsum(ivar)==1 % variable represneting a fixed coordinate |
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435 | DataOut.VarDimName{ivar}=DimCell; |
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436 | end |
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437 | end |
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438 | indexremove=find(~testsum); |
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439 | if ~isempty(indexremove) |
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440 | DataOut.ListVarName(1+indexremove)=[]; |
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441 | DataOut.VarDimName(indexremove)=[]; |
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442 | if isfield(DataOut,'Role') && ~isempty(DataOut.Role{1})%generaliser aus autres attributs |
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443 | DataOut.Role(1+indexremove)=[]; |
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444 | end |
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445 | end |
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446 | |
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447 | %shift variable attributes |
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448 | if isfield(DataOut,'VarAttribute') |
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449 | DataOut.VarAttribute=[{[]} DataOut.VarAttribute]; |
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450 | end |
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451 | DataOut.VarDimName=[{'Time'} DataOut.VarDimName]; |
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452 | DataOut.Action=Param.Action;%name of the processing programme |
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453 | test_time=diff(DataOut.Time)>0;% test that the readed time is increasing (not constant) |
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454 | if ~test_time |
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455 | DataOut.Time=1:nbfield; |
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456 | end |
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457 | |
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458 | % display nbmissing |
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459 | if ~isequal(nbmissing,0) |
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460 | disp_uvmat('WARNING',[num2str(nbmissing) ' files skipped: missing files or bad input, see command window display'],checkrun) |
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461 | end |
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462 | |
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463 | %% name of result file |
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464 | OutputFile=fullfile_uvmat(RootPath{1},OutputDir,RootFile{1},FileExtOut,NomTypeOut,first_i,last_i,first_j,last_j); |
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465 | errormsg=struct2nc(OutputFile,DataOut); %save result file |
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466 | if isempty(errormsg) |
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467 | display([OutputFile ' written']) |
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468 | else |
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469 | disp_uvmat('ERROR',['error in Series/struct2nc: ' errormsg],checkrun) |
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470 | end |
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471 | |
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472 | %% plot the time series (the last one in case of multislices) |
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473 | if checkrun |
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474 | figure |
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475 | haxes=axes; |
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476 | plot_field(DataOut,haxes) |
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477 | |
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478 | %% display the result file using the GUI get_field |
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479 | hget_field=findobj(allchild(0),'name','get_field'); |
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480 | if ~isempty(hget_field) |
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481 | delete(hget_field) |
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482 | end |
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483 | get_field(OutputFile,DataOut) |
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484 | end |
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485 | |
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486 | |
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