[2] | 1 | %'uvmat': function associated with the GUI 'uvmat.fig' for images and data field visualization
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| 2 | %------------------------------------------------------------------------
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| 3 | % function huvmat=uvmat(input)
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| 4 | %
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| 5 | %OUTPUT
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| 6 | % huvmat=current handles of the GUI uvmat.fig
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[45] | 7 | %%
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[2] | 8 | %
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| 9 | %INPUT:
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| 10 | % input: input file name (if character chain), or input image matrix to
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| 11 | % visualize, or Matlab structure representing netcdf fields (with fields
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| 12 | % ListVarName....)
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| 13 | %
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| 14 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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[38] | 15 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, joel.sommeria@legi.grenoble-inp.fr.
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[2] | 16 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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| 17 | % This open is part of the toolbox UVMAT.
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| 18 | %
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| 19 | % UVMAT is free software; you can redistribute it and/or modify
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| 20 | % it under the terms of the GNU General Public License as published by
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| 21 | % the Free Software Foundation; either version 2 of the License, or
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| 22 | % (at your option) any later version.
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| 23 | %
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| 24 | % UVMAT is distributed in the hope that it will be useful,
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| 25 | % but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 26 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 27 | % GNU General Public License (open UVMAT/COPYING.txt) for more details.
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| 28 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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| 29 | %
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| 30 | % Information stored on the interface:
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| 31 | % 'Strings' of all edit boxes and menus: get(handles.Tag,'String')
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| 32 | % 'Values' of all menus and toggle buttons: get(handles.Tag,'Value')
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| 33 | % Matlab structure stored as 'UserData' of the figure uvmat.fig,(can be obtained by right mouse click on the interface).
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| 34 | % It contains the following fields:
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| 35 | % - Fixed specifiacation of plotting figures and axes (defined bu uvmat_OpeningFcn)
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| 36 | % .PosColorbar: [0.8210 0.4710 0.0190 0.4450]; specified position of the colorbar on figures
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| 37 | % - Information read in the documentation open of a series (activated by RootPath_Callback) :
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| 38 | % .XmlData, with fields:
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| 39 | % .Time: matrix of times of the images with index i and j
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| 40 | % .GeometryCalib: [1x1 struct]
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| 41 | % - Information defined from the interface:
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| 42 | % .NewSeries: =1 when the first view of a new field series is displayed, else 0
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| 43 | % .filename:(char string)
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| 44 | % .VelType:(char string) type of velocity field selected
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| 45 | % .VelType_1:(char string) REMPLACER LE CELL ACTUEL
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| 46 | % .FieldName: (char string) main field selected('image', 'velocity'...)
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| 47 | % .FieldName_1:(char string) second field selected('image', 'velocity'...)
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| 48 | % .CName: (char string)name of the scalar used for vector colors
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| 49 | % .CoordType: (char string) coordinate transform: e.g. 'phys' or 'px'
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| 50 | % .MouseAction: store the current effect of mouse button (create or edit objects)
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| 51 | % - Information on projection objects
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| 52 | % .Object: {[1x1 struct]}
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| 53 | % .CurrentObjectIndex: index of the projection object .Object currently selected for editing
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| 54 | % -Information on the current field (Field{i})
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| 55 | % .Txt : text information to display (e.g. error message)
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| 56 | % .NbDim: number of dimensions (=0 by default)
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| 57 | % .NbCoord: number of vector components
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| 58 | % .CoordType: expresses the type of coordinate ('px' for image, 'sig' for instruments, or 'phys')
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| 59 | % .dt: time interval for the corresponding image pair
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| 60 | % .Mesh: estimated typical distance between vectors
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| 61 | % .ZMax:
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| 62 | % .ZMin:
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| 63 | % .X, .Y, .Z: set of vector coordinates
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| 64 | % .U,.V,.W: corresponding set of vector components
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| 65 | % .F: corresponding set of warning flags
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| 66 | % .FF: corresponding set of false flags, =0 for good vectors
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| 67 | % .C: corresponding values of the scalar used for vector color
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| 68 | % (.X, .Y, .Z,.U,.V,.W,.F,.FF,.C are matlab vectors of the same length,
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| 69 | % equal to the number of vectors stored in the input open)
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| 70 | % .CName: name of the scalar .C
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| 71 | % .CType: type of the scalar .C, setting how the scalar is obtained (see 'Scalars' below)
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| 72 | % .A image or scalar
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| 73 | % .AX: vector of dimension 2 representing the first and last values
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| 74 | % of the X coordinates for the image or scalar known on a regular grid,
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| 75 | % or vector of dimension .A for a scaler defined on irregular grid.
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| 76 | % .AY: same as .AX along the Y direction
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| 77 | % .AName: name of the scalar, ='image' for an image
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| 78 |
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| 79 | % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% DATA FLOW (for run0_Callback) %%%%%%%%%%%%%%%%%%%%:
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| 80 | %
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| 81 | % Main input open second input open(_1) second image (pair animation)
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| 82 | % read_ncfield.m | |
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[45] | 83 | % read image.m | |
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[2] | 84 | % Field{1} Field{2}
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| 85 | % |
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| 86 | % coord transform (phys.m) or other user defined fct acting on Field{i} |
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| 87 | % Field{i}
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| 88 | % |
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| 89 | % calc_field.m: calculate scalar or other derived fields (vort, div..).
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| 90 | %
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| 91 | % sub_field.m: combine the input Field{i} in a single set of fields (vector + scalar):
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| 92 | % Field{i=1->3}.X --> UvData.X |
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| 93 | % |
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| 94 | % UvData
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| 95 | % |
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| 96 | % plot histograms of the whole field
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| 97 | % proj_field.m: project the set of fields on the current projection objects defined by UvData.Object
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| 98 | % | |
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| 99 | % ObjectData
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| 100 | % |
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| 101 | % plot_field.m: plot the projected fields and store them as user |
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| 102 | % data of the plotting axes |
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| 103 | % |
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| 104 | % AxeData
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| 105 | %
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[15] | 106 | %%%%%%%%%%%%%% SCALARS: %%%%%%%%%%%%??%%%
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[2] | 107 | % scalars are displayed either as an image or countour plot, either as a color of
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| 108 | % velocity vectors. The scalar values in the first case is represented by
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| 109 | % UvData.Field.A, and by UvData.Field.C in the second case. The corresponding set of X
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| 110 | % and Y coordinates are represented by UvData.Field.AX and UvData.Field.AY, and .X and
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| 111 | % .Y for C (the same as velocity vectors). If A is a nxxny matrix (scalar
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| 112 | % on a regtular grid), then .AX andf.AY contains only two elements, represneting the
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| 113 | % coordinates of the four image corners. The scalar name is represented by
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| 114 | % the strings .AName and/or .CName.
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| 115 | % If the scalar exists in an input open (image or scalar stored under its
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| 116 | % name in a netcdf open), it is directly read at the level of Field{1}or Field{2}.
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| 117 | % Else only its name AName is recorded in Field{i}, and its field is then calculated
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| 118 | %by the fuction calc_scal after the coordinate transform or after projection on an edit
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| 119 |
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| 120 | % Properties attached to plotting figures (standard Matlab properties):
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| 121 | % 'CurrentAxes'= gca or get(gcf,'CurrentAxes');
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| 122 | % 'CurrentPoint'=get(gcf,'CurrentPoint'): figure coordinates of the point over which the mouse is positioned
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| 123 | % 'CurrentCharacter'=get(gcf,'CurrentCharacter'): last character typed over the figure where the mouse is positioned
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| 124 | % 'WindowButtonMotionFcn': function permanently called by mouse motion over the figure
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| 125 | % 'KeyPressFcn': function called by pressing a key on the key board
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| 126 | % 'WindowButtonDownFcn': function called by pressing the mouse over the figure
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| 127 | % 'WindowButtonUpFcn': function called by releasing the mouse pressure over the figure
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| 128 |
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| 129 | % Properties attached to plotting axes:
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| 130 | % 'CurrentPoint'=get(gca,'CurrentPoint'); (standard Matlab) same as for the figure, but position in plot coordinates.
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| 131 | % AxeData:=get(gca,'UserData');
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| 132 | % AxeData.Drawing = create: create a new edit
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| 133 | % = deform: modify an existing edit by moving its defining create
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| 134 | % = off: no current drawing action
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| 135 | % = translate: translate an existing edit
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| 136 | % = zoom: isolate a subregion for zoom in=1 if an edit is being currently drawn, 0 else (set to 0 by releasing mouse button)
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| 137 | % .hset_edit=handle of the set_edit interface (if a projection edit is edited);
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| 138 | % .CurrentOrigin: Origin of a curently drawn edit
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| 139 | % .CurrentLine: currently drawn menuline (A REVOIR)
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| 140 | % .CurrentObject: handle of the currently drawn edit
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| 141 | % .CurrentRectZoom: current rectangle used for zoom
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| 142 | % .zoomon : zoom state (a revoir)
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| 143 | % .X, .Y, .Z: array of coordinates defining the position of the vector: ASSOCIER AU PLAN (OBJET) PLUTOT QU'A L'AXE ?
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| 144 | % .U, .V, .W: array of components of the vector
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| 145 | % .C:
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| 146 | % .F:
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| 147 | % .FF:
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| 148 | % .A
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| 149 |
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| 150 | % Properties attached to projection objects (create, menuline, menuplane...):
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| 151 | % 'Tag'='proj_edit': for all projection objects
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| 152 | % ObjectData.Style=...: style of projection edit:
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| 153 | % .ProjMode
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| 154 | % .Coord: defines the position of the edit
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| 155 | % .XMin,YMin....
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| 156 | % .XMax,YMax....
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| 157 | % .DX,DY,DZ
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| 158 | % .Phi, .Theta, .Psi : Euler angles
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| 159 | % .X,.Y,.U,.V.... : field data projected on the edit
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| 160 | % .IndexObj: index in the list of UvData.Object
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| 161 | %during plotting
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| 162 | % .plotaxes: handles of the current axes used to plot the result of field projection on the object
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| 163 | % .plothandle: vector of handle(s) of the object graphic represnetation in all the opened plotting axes
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| 164 | % To each projection object #iobj, corresponds an axis
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| 165 | % Object{iobj}.plotaxes and nbobj representation graphs Object{iobj}.plothandles(:) (where nbobj is the
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| 166 | % nbre of current objects opened in uvmat. Note that Object{iobj}.plothandles(iobj)=[] : an object is not represented in its own projection field;
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| 167 | %-------------------------------------------------------------------
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| 168 | %-------------------------------------------------------------------
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| 169 | % I - MAIN FUNCTION UVMAT (DO NOT MODIFY)
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| 170 | %-------------------------------------------------------------------
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| 171 | %-------------------------------------------------------------------
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| 172 | function varargout = uvmat(varargin)
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| 173 |
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| 174 | % Begin initialization code - DO NOT EDIT
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| 175 | gui_Singleton = 1;
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| 176 | gui_State = struct('gui_Name', mfilename, ...
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| 177 | 'gui_Singleton', gui_Singleton, ...
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| 178 | 'gui_OpeningFcn', @uvmat_OpeningFcn, ...
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| 179 | 'gui_OutputFcn', @uvmat_OutputFcn, ...
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| 180 | 'gui_LayoutFcn', [], ...
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| 181 | 'gui_Callback', []);
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| 182 | if nargin && ischar(varargin{1})
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| 183 | gui_State.gui_Callback = str2func(varargin{1});
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| 184 | end
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| 185 |
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| 186 | if nargout
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| 187 | varargout{1:nargout} = gui_mainfcn(gui_State, varargin{:});
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| 188 | else
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| 189 | gui_mainfcn(gui_State, varargin{:});
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| 190 | end
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| 191 | % End initialization code - DO NOT EDIT
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| 192 |
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| 193 | %-------------------------------------------------------------------
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| 194 | % --- Executes just before uvmat is made visible.
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| 195 | function uvmat_OpeningFcn(hObject, eventdata, handles, input )
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| 196 | %-------------------------------------------------------------------
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| 197 | %WARNING: avoid the second input parameter, leads to erros
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[39] | 198 | global dircur dir_opening nb_builtin
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[2] | 199 | % Choose default command menuline output for uvmat
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| 200 | handles.output = hObject;
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| 201 |
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| 202 | % Update handles structure
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| 203 | guidata(hObject, handles);
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| 204 |
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[41] | 205 | dircur=pwd; %current working directory
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[2] | 206 | dir_opening=dircur;
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| 207 |
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| 208 | % set the position of colorbar and ancillary GUIs:
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| 209 | set(hObject,'Units','Normalized')
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| 210 | movegui(hObject,'center')
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| 211 | UvData.PosColorbar=[0.805 0.022 0.019 0.445];
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| 212 | UvData.SetObjectOrigin=[-0.05 -0.03]; %position for set_object
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| 213 | UvData.SetObjectSize=[0.3 0.7];
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| 214 | UvData.CalOrigin=[0.95 -0.03];%position for geometry_calib (TO IMPROVE)
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| 215 | UvData.CalSize=[0.28 1];
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| 216 |
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| 217 | %functions for the mouse and keyboard
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| 218 | set(handles.histo_u,'NextPlot','replacechildren');
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| 219 | set(handles.histo_v,'NextPlot','replacechildren');
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| 220 | set(hObject,'KeyPressFcn',{'keyboard_callback',handles})%set keyboard action function
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| 221 | set(hObject,'WindowButtonMotionFcn',{'mouse_motion',handles})%set mouse action functio
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| 222 | set(hObject,'WindowButtonDownFcn',{'mouse_down'})%set mouse click action function
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| 223 | set(hObject,'WindowButtonUpFcn',{'mouse_up',handles})
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| 224 |
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[39] | 225 | %TRANSFORM menu: loads the information stored in prefdir to initiate the browser and the list of functions
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| 226 | menu_str={'';'phys';'px';'phys_polar'};
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| 227 | nb_builtin=numel(menu_str); %number of functions
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[45] | 228 | path_uvmat=fileparts(which('uvmat'));
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[39] | 229 | addpath(fullfile(path_uvmat,'transform_field'))
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| 230 | fct_handle{1,1}=[];
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[45] | 231 | testexist=zeros(size(menu_str));%default
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[39] | 232 | testexist(1)=1;
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| 233 | for ilist=2:length(menu_str)
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| 234 | if exist(menu_str{ilist},'file')
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| 235 | fct_handle{ilist,1}=str2func(menu_str{ilist});
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| 236 | testexist(ilist)=1;
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| 237 | else
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| 238 | testexist(ilist)=0;
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| 239 | end
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| 240 | end
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| 241 | rmpath(fullfile(path_uvmat,'transform_field'))
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| 242 |
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[2] | 243 | %load the list of previously browsed files in menus Open and Open_1
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[40] | 244 | dir_perso=prefdir; % path to the directory .matlab for personal data
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| 245 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat');% personal data file uvmauvmat_perso.mat' in .matlab
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[2] | 246 | if exist(profil_perso,'file')
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| 247 | h=load (profil_perso);
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| 248 | if isfield(h,'MenuFile_1')
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| 249 | set(handles.MenuFile_1,'Label',h.MenuFile_1);
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| 250 | set(handles.MenuFile_1_1,'Label',h.MenuFile_1);
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| 251 | end
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| 252 | if isfield(h,'MenuFile_1')
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| 253 | set(handles.MenuFile_2,'Label',h.MenuFile_2);
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| 254 | set(handles.MenuFile_2_1,'Label',h.MenuFile_2);
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| 255 | end
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| 256 | if isfield(h,'MenuFile_1')
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| 257 | set(handles.MenuFile_3,'Label',h.MenuFile_3);
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| 258 | set(handles.MenuFile_3_1,'Label',h.MenuFile_3);
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| 259 | end
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| 260 | if isfield(h,'MenuFile_1')
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| 261 | set(handles.MenuFile_4,'Label',h.MenuFile_4);
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| 262 | set(handles.MenuFile_4_1,'Label',h.MenuFile_4);
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| 263 | end
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| 264 | if isfield(h,'MenuFile_1')
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| 265 | set(handles.MenuFile_5,'Label',h.MenuFile_5);
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| 266 | set(handles.MenuFile_5_1,'Label',h.MenuFile_5);
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[39] | 267 | end
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| 268 | if isfield(h,'transform_fct') && iscell(h.transform_fct)
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| 269 | for ilist=1:length(h.transform_fct);
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| 270 | [path,file]=fileparts(h.transform_fct{ilist});
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| 271 | addpath(path)
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| 272 | if exist(file,'file')
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| 273 | h_func=str2func(file);
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[45] | 274 | testexist=[testexist 1]; %#ok<AGROW>
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[39] | 275 | else
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| 276 | h_func=[];
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[45] | 277 | testexist=[testexist 0]; %#ok<AGROW>
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[39] | 278 | end
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[45] | 279 | fct_handle=[fct_handle; {h_func}];%#ok<AGROW> %concatene the list of paths
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[39] | 280 | rmpath(path)
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[45] | 281 | menu_str=[menu_str; {file}]; %#ok<AGROW>
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[39] | 282 | end
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| 283 | end
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[2] | 284 | end
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[45] | 285 | menu_str=menu_str(testexist==1);%=menu_str(testexist~=0)
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| 286 | fct_handle=fct_handle(testexist==1);
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[39] | 287 | menu_str=[menu_str;{'more...'}];
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| 288 | set(handles.transform_fct,'String',menu_str)
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| 289 | set(handles.transform_fct,'UserData',fct_handle)% store the list of path in UserData of ACTION
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[2] | 290 |
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| 291 | %initiates menu of vector colors
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| 292 | list_menu=calc_field;
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| 293 | %list_menu=[{'ima_cor'};{'black'};{'white'};list_menu(3:end)];
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| 294 | set(handles.col_vec,'String',list_menu)
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| 295 |
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| 296 | %check the path and date of modification of all functions in uvmat
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| 297 | path_to_uvmat=which ('uvmat');% check the path detected for source file uvmat
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| 298 | [errormsg,date_str]=check_functions;%check the path of the functions called by uvmat.m
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[45] | 299 | date_str=['last modification: ' date_str];
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[2] | 300 | %case of an input argument for uvmat
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| 301 | testinputfield=0;
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| 302 | inputfile=[];
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| 303 | Field=[];
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| 304 | if exist('input','var')
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| 305 | if ~isempty(errormsg)
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[38] | 306 | msgbox_uvmat('WARNING',errormsg)
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[2] | 307 | end
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| 308 | if ishandle(handles.UVMAT_title)
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| 309 | delete(handles.UVMAT_title)
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| 310 | end
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| 311 | if isstruct(input)
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| 312 | if isfield(input,'InputFile')
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| 313 | inputfile=input.InputFile;
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| 314 | end
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| 315 | Field=input;
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| 316 | elseif ischar(input)% file name introduced as input
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| 317 | inputfile=input;
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[59] | 318 | elseif isnumeric(input)%simple matrix introduced as input
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[2] | 319 | sizinput=size(input);
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| 320 | if sizinput(1)<=1 || sizinput(2)<=1
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[38] | 321 | msgbox_uvmat('ERROR','bad input for uvmat: file name, structure or numerical matrix accepted')
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[2] | 322 | return
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| 323 | end
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[59] | 324 | Field.ListVarName={'A','coord_y','coord_x'};
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| 325 | Field.VarDimName={{'coord_y','coord_x'},'cord_y','coord_x'};
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[2] | 326 | Field.A=input;
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[59] | 327 | Field.coord_x=[0.5 size(input,2)-0.5];
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| 328 | Field.coord_y=[size(input,1)-0.5 0.5];
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[2] | 329 | end
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| 330 | if ~isempty(inputfile)
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| 331 | display_file_name(hObject, eventdata, handles,inputfile)
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| 332 | testinputfield=1;
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| 333 | else
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| 334 | UvData.TestInputFile=0;
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| 335 | end
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| 336 | if ~isempty(Field)
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| 337 | set(handles.Fields,'Value',1)
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[39] | 338 | set(handles.Fields,'String',{'get_field...'})
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[59] | 339 | % set(handles.Fields,'UserData',Field)
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[2] | 340 | testinputfield=1;
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| 341 |
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| 342 | % set the colorbar position on the interface:
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| 343 | UvData.PosColorbar=[0.805 0.022 0.019 0.445];
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| 344 | elseif ischar(input)
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| 345 | scan_i_Callback(handles.scan_i, eventdata, handles);
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| 346 | end
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| 347 | else
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| 348 | if ishandle(handles.UVMAT_title)
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[34] | 349 | fid=fopen('revision.log');
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[33] | 350 | if fid~=-1
|
---|
[30] | 351 | a=textscan(fid,'%s%s%s',1,'HeaderLines',1,'Delimiter','|');
|
---|
[45] | 352 | set(handles.UVMAT_title,'String',[{'Copyright Joel Sommeria, 2008, Coriolis/ LEGI / CNRS-UJF-INPG';'GNU General Public License'; path_to_uvmat; ['at revision ' a{1}{1}]};a{3}{1};date_str;errormsg]);
|
---|
[30] | 353 | fclose(fid);
|
---|
| 354 | else
|
---|
[31] | 355 | set(handles.UVMAT_title,'String',[{'Copyright Joel Sommeria, 2008, Coriolis/ LEGI / CNRS-UJF-INPG';'GNU General Public License'; path_to_uvmat;date_str};errormsg]);
|
---|
[30] | 356 | end
|
---|
[2] | 357 | end
|
---|
| 358 | end
|
---|
| 359 | UvData.NewSeries=1;
|
---|
| 360 | set(hObject,'UserData',UvData)
|
---|
| 361 | if testinputfield
|
---|
| 362 | %delete drawn objects
|
---|
| 363 | hother=findobj(handles.axes3,'Tag','proj_object');%find all the proj objects
|
---|
| 364 | for iobj=1:length(hother)
|
---|
| 365 | delete_object(hother(iobj))
|
---|
| 366 | end
|
---|
| 367 | if isempty(inputfile)
|
---|
[59] | 368 | errormsg=refresh_field(handles,[],[],[],[],[],[],{Field});
|
---|
[2] | 369 | set(handles.MenuTools,'Enable','on')
|
---|
| 370 | set(handles.OBJECT_txt,'Visible','on')
|
---|
| 371 | set(handles.edit,'Visible','on')
|
---|
| 372 | set(handles.list_object,'Visible','on')
|
---|
| 373 | set(handles.frame_object,'Visible','on')
|
---|
| 374 | else
|
---|
| 375 | update_rootinfo(hObject,eventdata,handles);
|
---|
| 376 | end
|
---|
| 377 | end
|
---|
[40] | 378 | set_vec_col_bar(handles) %update the display of color code for vectors
|
---|
[38] | 379 |
|
---|
[2] | 380 | %-------------------------------------------------------------------
|
---|
| 381 | % --- Outputs from this function are returned to the command menuline.
|
---|
| 382 | function varargout = uvmat_OutputFcn(hObject, eventdata, handles)
|
---|
| 383 | varargout{1} = handles.output;% the only output argument is the handle to the GUI figure
|
---|
| 384 |
|
---|
| 385 | %-------------------------------------------------------------------
|
---|
| 386 | %-------------------------------------------------------------------
|
---|
| 387 | % II - FUNCTIONS FOR INTRODUCING THE INPUT FILES
|
---|
| 388 | % automatically sets the global properties when the rootfile name is introduced
|
---|
| 389 | % then activate the view-field action if selected
|
---|
| 390 | % it is activated either by clicking on the RootPath window or by the
|
---|
| 391 | % browser
|
---|
| 392 | %------------------------------------------------------------------
|
---|
| 393 | %------------------------------------------------------------------
|
---|
| 394 |
|
---|
| 395 | % --- Executes on the menu Open/Browse...
|
---|
| 396 | % search the files, recognize their type according to their name and fill the rootfile input windows
|
---|
| 397 | function MenuBrowse_Callback(hObject, eventdata, handles)
|
---|
| 398 | oldfile=read_file_boxes(handles);
|
---|
| 399 |
|
---|
| 400 | if isempty(oldfile)||isequal(oldfile,'') %loads the previously stored file name and set it as default in the file_input box
|
---|
| 401 | dir_perso=prefdir;
|
---|
| 402 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat');
|
---|
| 403 | if exist(profil_perso,'file')
|
---|
| 404 | h=load (profil_perso);
|
---|
| 405 | if isfield(h,'MenuFile_1')
|
---|
| 406 | oldfile=h.MenuFile_1;
|
---|
| 407 | end
|
---|
| 408 | end
|
---|
| 409 | end
|
---|
| 410 | [FileName, PathName] = uigetfile( ...
|
---|
| 411 | {'*.xml;*.xls;*.civ;*.png;*.jpg;*.tif;*.avi;*.AVI;*.nc;*.cmx;*.fig;*.log;*.dat', ' (*.xml,*.xls,*.civ,*.jpg ,*.png, .tif, *.avi,*.nc,*.cmx ,*.fig,*.log,*.dat)';
|
---|
| 412 | '*.xml', '.xml files '; ...
|
---|
| 413 | '*.xls', '.xls files '; ...
|
---|
| 414 | '*.civ', '.civ files '; ...
|
---|
| 415 | '*.jpg',' jpeg image files'; ...
|
---|
| 416 | '*.png','.png image files'; ...
|
---|
| 417 | '*.tif','.tif image files'; ...
|
---|
| 418 | '*.avi;*.AVI','.avi movie files'; ...
|
---|
| 419 | '*.nc','.netcdf files'; ...
|
---|
| 420 | '*.cdf','.netcdf files'; ...
|
---|
| 421 | '*.cmx','.cmx text files';...
|
---|
| 422 | '*.cmx2','.cmx2 text files';...
|
---|
| 423 | '*.fig','.fig files (matlab fig)';...
|
---|
| 424 | '*.log','.log text files ';...
|
---|
| 425 | '*.dat','.dat text files ';...
|
---|
| 426 | '*.*', 'All Files (*.*)'}, ...
|
---|
| 427 | 'Pick a file',oldfile);
|
---|
| 428 | %global filebase
|
---|
| 429 | fileinput=[PathName FileName];%complete file name
|
---|
| 430 | testblank=findstr(fileinput,' ');%look for blanks
|
---|
| 431 | if ~isempty(testblank)
|
---|
[38] | 432 | msgbox_uvmat('ERROR',['The input file name ' fileinput ' contains blank character : This is not allowed. Please change name'])
|
---|
[2] | 433 | return
|
---|
| 434 | end
|
---|
| 435 | sizf=size(fileinput);
|
---|
| 436 | if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end
|
---|
| 437 |
|
---|
| 438 | % display the selected field and related information
|
---|
| 439 | display_file_name(hObject, eventdata, handles,fileinput)
|
---|
| 440 |
|
---|
| 441 | %update list of recent files in the menubar
|
---|
| 442 | MenuFile_1=fileinput;
|
---|
| 443 | MenuFile_2=get(handles.MenuFile_1,'Label');
|
---|
| 444 | MenuFile_3=get(handles.MenuFile_2,'Label');
|
---|
| 445 | MenuFile_4=get(handles.MenuFile_3,'Label');
|
---|
| 446 | MenuFile_5=get(handles.MenuFile_4,'Label');
|
---|
| 447 | set(handles.MenuFile_1,'Label',MenuFile_1)
|
---|
| 448 | set(handles.MenuFile_2,'Label',MenuFile_2)
|
---|
| 449 | set(handles.MenuFile_3,'Label',MenuFile_3)
|
---|
| 450 | set(handles.MenuFile_4,'Label',MenuFile_4)
|
---|
| 451 | set(handles.MenuFile_5,'Label',MenuFile_5)
|
---|
| 452 | set(handles.MenuFile_1_1,'Label',MenuFile_1)
|
---|
| 453 | set(handles.MenuFile_2_1,'Label',MenuFile_2)
|
---|
| 454 | set(handles.MenuFile_3_1,'Label',MenuFile_3)
|
---|
| 455 | set(handles.MenuFile_4_1,'Label',MenuFile_4)
|
---|
| 456 | set(handles.MenuFile_5_1,'Label',MenuFile_5)
|
---|
| 457 | dir_perso=prefdir;
|
---|
| 458 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat');
|
---|
| 459 | if exist(profil_perso,'file')
|
---|
| 460 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-append'); %store the file names for future opening of uvmat
|
---|
| 461 | else
|
---|
| 462 | txt=ver;
|
---|
| 463 | Release=txt(1).Release;
|
---|
| 464 | relnumb=str2double(Release(3:4));
|
---|
| 465 | if relnumb >= 14
|
---|
| 466 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-V6'); %store the file names for future opening of uvmat
|
---|
| 467 | else
|
---|
| 468 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5'); %store the file names for future opening of uvmat
|
---|
| 469 | end
|
---|
| 470 | end
|
---|
| 471 |
|
---|
| 472 | % --------------------------------------------------------------------
|
---|
| 473 | function MenuFile_1_Callback(hObject, eventdata, handles)
|
---|
| 474 | fileinput=get(handles.MenuFile_1,'Label');
|
---|
| 475 | display_file_name(hObject, eventdata, handles,fileinput)
|
---|
| 476 |
|
---|
| 477 | % --------------------------------------------------------------------
|
---|
| 478 | function MenuFile_2_Callback(hObject, eventdata, handles)
|
---|
| 479 | fileinput=get(handles.MenuFile_2,'Label');
|
---|
| 480 | display_file_name(hObject, eventdata, handles,fileinput)
|
---|
| 481 |
|
---|
| 482 | % --------------------------------------------------------------------
|
---|
| 483 | function MenuFile_3_Callback(hObject, eventdata, handles)
|
---|
| 484 | fileinput=get(handles.MenuFile_3,'Label');
|
---|
| 485 | display_file_name(hObject, eventdata, handles,fileinput)
|
---|
| 486 |
|
---|
| 487 | % --------------------------------------------------------------------
|
---|
| 488 | function MenuFile_4_Callback(hObject, eventdata, handles)
|
---|
| 489 | fileinput=get(handles.MenuFile_4,'Label');
|
---|
| 490 | display_file_name(hObject, eventdata, handles,fileinput)
|
---|
| 491 |
|
---|
| 492 | % --------------------------------------------------------------------
|
---|
| 493 | function MenuFile_5_Callback(hObject, eventdata, handles)
|
---|
| 494 | fileinput=get(handles.MenuFile_5,'Label');
|
---|
| 495 | display_file_name(hObject, eventdata, handles,fileinput)
|
---|
| 496 |
|
---|
| 497 | %-----------------------------------------------------------------
|
---|
| 498 | % fills the edit boxes RootPath, RootFile,NomType...from an input file name 'fileinput'
|
---|
| 499 | %----------------------------------------------------------------
|
---|
| 500 | function display_file_name(hObject, eventdata, handles,fileinput)
|
---|
[29] | 501 | if ~exist(fileinput,'file')
|
---|
| 502 | msgbox_uvmat('ERROR',['input file ' fileinput ' does not exist'])
|
---|
| 503 | return
|
---|
| 504 | end
|
---|
[2] | 505 | [RootPath,RootFile,i1,i2,str_a,str_b,ext,NomType,SubDir]=name2display(fileinput);
|
---|
[29] | 506 | ext_test=''; %default
|
---|
| 507 | if ~isempty(ext)
|
---|
| 508 | form=imformats(ext(2:end));%test valid Matlab image formats
|
---|
| 509 | if ~isempty(form)
|
---|
| 510 | ext_test='.image';
|
---|
| 511 | imainfo=imfinfo(fileinput);
|
---|
| 512 | if length(imainfo) >1 %case of image with multiple frames
|
---|
| 513 | i1='1'; % set the frame counter to 1 by default
|
---|
| 514 | i2='';
|
---|
| 515 | str_a='';
|
---|
| 516 | str_b='';
|
---|
| 517 | NomType='*'; %indicate a set of indexed frames within a single file
|
---|
| 518 | [RootPath,RootFile]=fileparts(fileinput); %include the indices in the root file
|
---|
| 519 | end
|
---|
| 520 | elseif isequal(lower(ext),'.avi')
|
---|
| 521 | ext_test='.image';
|
---|
[2] | 522 | i1='1'; % set the frame counter to 1 by default
|
---|
| 523 | i2='';
|
---|
| 524 | str_a='';
|
---|
| 525 | str_b='';
|
---|
| 526 | NomType='*'; %indicate a set of indexed frames within a single file
|
---|
| 527 | [RootPath,RootFile]=fileparts(fileinput); %include the indices in the root file
|
---|
[29] | 528 | else
|
---|
| 529 | ext_test=lower(ext);
|
---|
[2] | 530 | end
|
---|
| 531 | end
|
---|
| 532 | switch ext_test
|
---|
| 533 | case {'.civ','.log','.cmx','.cmx2','.txt'} %display text file
|
---|
| 534 | edit(fileinput)
|
---|
| 535 | case '.fig' %display matlab figure
|
---|
| 536 | hfig=open(fileinput);
|
---|
| 537 | set(hfig,'WindowButtonMotionFcn','mouse_motion')%set mouse action functio
|
---|
| 538 | set(hfig,'WindowButtonUpFcn','mouse_up')%set mouse click action function
|
---|
| 539 | set(hfig,'WindowButtonUpFcn','mouse_down')%set mouse click action function
|
---|
| 540 | case {'.xml','.xls'} % edit xml or Excel files
|
---|
| 541 | editxml(fileinput);
|
---|
| 542 | case {'.avi','.image','.vol','.nc','.cdf'}
|
---|
| 543 | set(handles.RootPath,'String',RootPath);
|
---|
| 544 | if isequal(SubDir,'')
|
---|
| 545 | rootname=fullfile(RootPath,RootFile);
|
---|
| 546 | else
|
---|
| 547 | rootname=fullfile(RootPath,SubDir,RootFile);
|
---|
| 548 | SubDir=['/' SubDir]; %display the separator
|
---|
| 549 | end
|
---|
| 550 | set(handles.SubDir,'String',SubDir);
|
---|
| 551 | set(handles.RootFile,'String',['/' RootFile]); %display the separator
|
---|
| 552 | indices=fileinput(length(rootname)+1:end);
|
---|
| 553 | indices(end-length(ext)+1:end)=[]; %remove extension
|
---|
| 554 | set(handles.FileIndex,'String',indices);
|
---|
| 555 | set(handles.FileIndex,'UserData',NomType);
|
---|
| 556 | set(handles.FileExt,'String',ext);
|
---|
| 557 | % fill file index counters
|
---|
| 558 | set(handles.i1,'String',i1);
|
---|
| 559 |
|
---|
| 560 | set(handles.i2,'String',i2);
|
---|
| 561 | set(handles.j1,'String',str_a);
|
---|
| 562 | set(handles.j2,'String',str_b);
|
---|
| 563 |
|
---|
| 564 | % synchronise indices of the second input file if it exists
|
---|
| 565 | if get(handles.SubField,'Value')==1% if the subfield button is activated, update the field numbers
|
---|
| 566 | [FileName_1,RootPath_1,FileBase_1,FileIndices_1,FileExt_1,SubDir_1]=read_file_boxes_1(handles);
|
---|
| 567 | NomType_1=get(handles.FileIndex_1,'UserData');
|
---|
| 568 | [FileName_1,idetect]=name_generator(FileBase_1,stra2num(i1),stra2num(i2),FileExt_1,NomType_1,1,stra2num(str_a),stra2num(str_b),SubDir_1);
|
---|
| 569 | if idetect
|
---|
| 570 | FileIndex_1=name_generator('',stra2num(i1),stra2num(i2),'',NomType_1,1,stra2num(str_a),stra2num(str_b),'');
|
---|
| 571 | set(handles.FileIndex_1,'String',FileIndex_1)
|
---|
| 572 | else
|
---|
| 573 | set(handles.SubField,'Value',0)
|
---|
| 574 | SubField_Callback(hObject, eventdata, handles)
|
---|
| 575 | end
|
---|
| 576 | end
|
---|
| 577 |
|
---|
| 578 | %enable other menus
|
---|
| 579 | set(handles.MenuOpen_1,'Enable','on')
|
---|
| 580 | set(handles.MenuFile_1_1,'Enable','on')
|
---|
| 581 | set(handles.MenuFile_2_1,'Enable','on')
|
---|
| 582 | set(handles.MenuFile_3_1,'Enable','on')
|
---|
| 583 | set(handles.MenuFile_4_1,'Enable','on')
|
---|
| 584 | set(handles.MenuFile_5_1,'Enable','on')
|
---|
| 585 | set(handles.MenuExport,'Enable','on')
|
---|
| 586 | set(handles.MenuExportFigure,'Enable','on')
|
---|
| 587 | set(handles.MenuExportMovie,'Enable','on')
|
---|
| 588 | set(handles.MenuTools,'Enable','on')
|
---|
| 589 | set(handles.OBJECT_txt,'Visible','on')
|
---|
| 590 | set(handles.edit,'Visible','on')
|
---|
| 591 | set(handles.list_object,'Visible','on')
|
---|
| 592 | set(handles.frame_object,'Visible','on')
|
---|
| 593 | % initiate input file:
|
---|
| 594 | update_rootinfo(hObject,eventdata,handles);
|
---|
| 595 | otherwise
|
---|
| 596 | msgbox_uvmat('ERROR',['invalid input file extension' ext])
|
---|
| 597 | end
|
---|
| 598 |
|
---|
| 599 | %-------------------------------------------------------------------
|
---|
| 600 | function RootPath_Callback(hObject,eventdata,handles)
|
---|
| 601 | update_rootinfo(hObject,eventdata,handles);
|
---|
| 602 |
|
---|
| 603 | %-------------------------------------------------------------------
|
---|
| 604 | %-- called by action in RootFile edit box
|
---|
| 605 | %-------------------------------------------------------------------
|
---|
| 606 | function SubDir_Callback(hObject, eventdata, handles)
|
---|
| 607 | %refresh the menu of input fields
|
---|
| 608 | Fields_Callback(hObject, eventdata, handles);
|
---|
| 609 | % refresh the current field
|
---|
| 610 | run0_Callback(hObject, eventdata, handles);
|
---|
| 611 |
|
---|
| 612 |
|
---|
| 613 | %-------------------------------------------------------------------
|
---|
| 614 | %-- called by action in RootFile edit box
|
---|
| 615 | %-------------------------------------------------------------------
|
---|
| 616 | function RootFile_Callback(hObject, eventdata, handles)
|
---|
| 617 | update_rootinfo(hObject,eventdata,handles)
|
---|
| 618 |
|
---|
| 619 | %-------------------------------------------------------------------
|
---|
| 620 | %-- called by action in FileIndex edit box
|
---|
| 621 | %-------------------------------------------------------------------
|
---|
| 622 | function FileIndex_Callback(hObject, eventdata, handles)
|
---|
| 623 | NomType_str=get(handles.FileIndex,'String') ;
|
---|
| 624 | [P,F,str1,str2,str_a,str_b]=name2display(['xx' NomType_str get(handles.FileExt,'String')]);
|
---|
| 625 | % display the new index values on the counters
|
---|
| 626 | set(handles.i1,'String',str1);
|
---|
| 627 | set(handles.i2,'String',str2);
|
---|
| 628 | set(handles.j1,'String',str_a);
|
---|
| 629 | set(handles.j2,'String',str_b);
|
---|
| 630 |
|
---|
| 631 | %-------------------------------------------------------------------
|
---|
| 632 | % -- update information about a new field series (indices to scan, timing, calibration from an xml file, then refresh current plots
|
---|
| 633 | %-------------------------------------------------------------------
|
---|
| 634 | function update_rootinfo(hObject,eventdata,handles)
|
---|
| 635 | global dircur dir_opening
|
---|
| 636 |
|
---|
| 637 | set(handles.RootPath,'BackgroundColor',[1 1 0])
|
---|
| 638 | drawnow
|
---|
| 639 | set(handles.Fields,'UserData',[])% reinialize data from uvmat opening
|
---|
[59] | 640 | %huvmat=get(handles.RootPath,'parent');
|
---|
| 641 | UvData=get(handles.uvmat,'UserData');%huvmat=handles of the uvmat interface
|
---|
[2] | 642 | UvData.NewSeries=1; %flag for run0: begin a new series
|
---|
| 643 | UvData.TestInputFile=1;
|
---|
| 644 | set(handles.fix_pair,'Value',0) % desactivate by default the comp_input '-'input window
|
---|
| 645 | %FileIndex_Callback(hObject, eventdata, handles)% update field counters
|
---|
| 646 |
|
---|
| 647 | [FileName,RootPath,FileBase,FileIndices,FileExt,SubDir]=read_file_boxes(handles);
|
---|
| 648 | if ~exist(FileName,'file')
|
---|
| 649 | msgbox_uvmat('ERROR',['input file ' FileName ' not found']);
|
---|
| 650 | return
|
---|
| 651 | end
|
---|
| 652 | nbfield=[];%default
|
---|
| 653 | nburst=[];%default
|
---|
| 654 |
|
---|
| 655 | % read timing and total frame number from the current file (movie files) !! may be overrid by xml file
|
---|
| 656 | XmlData.Time=[];%default
|
---|
| 657 | XmlData.GeometryCalib=[];%default
|
---|
| 658 | TimeUnit=[];%default
|
---|
| 659 | testima=0; %test for image input
|
---|
| 660 | if isequal(lower(FileExt),'.avi') %.avi file
|
---|
| 661 | testima=1;
|
---|
| 662 | info=aviinfo([FileBase FileIndices FileExt]);
|
---|
| 663 | nbfield=info.NumFrames;
|
---|
| 664 | nburst=1;
|
---|
| 665 | set(handles.Dt_txt,'String',['Dt=' num2str(1000/info.FramesPerSecond) 'ms']);%display the elementary time interval in millisec
|
---|
[59] | 666 | XmlData.Time=(0:1/info.FramesPerSecond:(info.NumFrames-1)/info.FramesPerSecond)';
|
---|
[2] | 667 | TimeUnit='s';
|
---|
| 668 | set(handles.npx,'String',num2str(info.Width));%fills nbre of pixels x box
|
---|
| 669 | set(handles.npy,'String',num2str(info.Height));%fills nbre of pixels y box
|
---|
| 670 | hhh=which('mmreader');
|
---|
| 671 | if ~isequal(hhh,'')&& mmreader.isPlatformSupported()% if the function is found (recent version of matlab)
|
---|
| 672 | UvData.MovieObject=mmreader([FileBase FileIndices FileExt]);
|
---|
| 673 | end
|
---|
| 674 | elseif ~isempty(imformats(FileExt(2:end))) || isequal(FileExt,'.vol')%&& isequal(NomType,'*')% multi-frame image
|
---|
| 675 | testima=1;
|
---|
| 676 | if ~isequal(SubDir,'')
|
---|
| 677 | RootFile=get(handles.RootFile,'String');
|
---|
| 678 | imainfo=imfinfo([fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]);
|
---|
| 679 | else
|
---|
| 680 | imainfo=imfinfo([FileBase FileIndices FileExt]);
|
---|
| 681 | end
|
---|
| 682 | if length(imainfo) >1 %case of image with multiple frames
|
---|
| 683 | nbfield=length(imainfo);
|
---|
| 684 | nburst=1;
|
---|
| 685 | end
|
---|
| 686 | if isfield(UvData,'MovieObject')
|
---|
| 687 | UvData=rmfield(UvData,'MovieObject');
|
---|
| 688 | end
|
---|
| 689 | else
|
---|
| 690 | %set(handles.last_i,'String','');%fills last_field box
|
---|
| 691 | set(handles.npx,'String','');%fills nbre of pixels x box
|
---|
| 692 | set(handles.npy,'String','');%fills nbre of pixels y box
|
---|
| 693 | if isfield(UvData,'MovieObject')
|
---|
| 694 | UvData=rmfield(UvData,'MovieObject');
|
---|
| 695 | end
|
---|
| 696 | end
|
---|
| 697 |
|
---|
| 698 | % read parameters (time, geometric calibration..) from a documentation file (.xml advised)
|
---|
| 699 | filexml=[FileBase '.xml'];
|
---|
| 700 | fileciv=[FileBase '.civ'];
|
---|
| 701 | warntext='';%default warning message
|
---|
| 702 | NbSlice=1;%default
|
---|
| 703 |
|
---|
| 704 | if exist(filexml,'file')
|
---|
| 705 | set(handles.view_xml,'Visible','on')
|
---|
| 706 | set(handles.view_xml,'BackgroundColor',[1 1 0])
|
---|
| 707 | set(handles.RootPath,'BackgroundColor',[1 1 1])
|
---|
| 708 | set(handles.view_xml,'String','view .xml')
|
---|
| 709 | drawnow
|
---|
| 710 | [XmlData,warntext]=imadoc2struct(filexml);
|
---|
| 711 | if ~isempty(warntext)
|
---|
| 712 | msgbox_uvmat('WARNING',warntext)
|
---|
| 713 | end
|
---|
| 714 | if isfield(XmlData,'TimeUnit')
|
---|
| 715 | if isfield(XmlData,'TimeUnit')&& ~isempty(XmlData.TimeUnit)
|
---|
| 716 | TimeUnit=XmlData.TimeUnit;
|
---|
| 717 | end
|
---|
| 718 | end
|
---|
| 719 | set(handles.view_xml,'BackgroundColor',[1 1 1])
|
---|
| 720 | drawnow
|
---|
| 721 | elseif exist(fileciv,'file')% if .civ file found
|
---|
| 722 | [error,XmlData.Time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([FileBase '.civ']);
|
---|
| 723 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0];
|
---|
| 724 | GeometryCalib.Tx=0;
|
---|
| 725 | GeometryCalib.Ty=0;
|
---|
| 726 | GeometryCalib.Tz=1;
|
---|
| 727 | GeometryCalib.dpx=1;
|
---|
| 728 | GeometryCalib.dpy=1;
|
---|
| 729 | GeometryCalib.sx=1;
|
---|
| 730 | GeometryCalib.Cx=0;
|
---|
| 731 | GeometryCalib.Cy=0;
|
---|
| 732 | GeometryCalib.f=1;
|
---|
| 733 | GeometryCalib.kappa1=0;
|
---|
| 734 | GeometryCalib.CoordUnit='cm';
|
---|
| 735 | XmlData.GeometryCalib=GeometryCalib;
|
---|
| 736 | if error==2, warntext=['no file ' FileBase '.civ'];
|
---|
| 737 | elseif error==1, warntext='inconsistent number of fields in the .civ file';
|
---|
| 738 | end
|
---|
| 739 | set(handles.npx,'String',num2str(npx));%fills nbre of pixels x box
|
---|
| 740 | set(handles.npy,'String',num2str(npy));%fills nbre of pixels y box
|
---|
| 741 | set(handles.pxcm,'String',num2str(pxcmx));%fills scale x (pixel/cm) box
|
---|
| 742 | set(handles.pycm,'String',num2str(pxcmy));%fills scale y (pixel/cm) box
|
---|
| 743 | set(handles.pxcm,'Visible','on');%fills scale x (pixel/cm) box
|
---|
| 744 | set(handles.pycm,'Visible','on');%fills scale y (pixel/cm) box
|
---|
| 745 | set(handles.view_xml,'Visible','on')
|
---|
| 746 | set(handles.view_xml,'String','view .civ')
|
---|
| 747 | else
|
---|
| 748 | set(handles.view_xml,'Visible','off')
|
---|
| 749 | end
|
---|
| 750 |
|
---|
| 751 | % store last index in handles.lat_i and .last_j
|
---|
| 752 | if ~isempty(XmlData.Time)
|
---|
| 753 | nbfield=size(XmlData.Time,1);
|
---|
| 754 | nburst=size(XmlData.Time,2);
|
---|
| 755 | end
|
---|
| 756 | last_i_cell=get(handles.last_i,'String');
|
---|
| 757 | if isempty(nbfield)
|
---|
| 758 | last_i_cell{1}='';
|
---|
| 759 | else
|
---|
| 760 | last_i_cell{1}=num2str(nbfield);
|
---|
| 761 | end
|
---|
| 762 | set(handles.last_i,'String',last_i_cell)
|
---|
| 763 | last_j_cell=get(handles.last_j,'String');
|
---|
| 764 | if isempty(nburst)
|
---|
| 765 | last_j_cell{1}='';
|
---|
| 766 | else
|
---|
| 767 | last_j_cell{1}=num2str(nburst);
|
---|
| 768 | end
|
---|
| 769 | set(handles.last_j,'String',last_j_cell);
|
---|
| 770 |
|
---|
| 771 | % store geometric calibration in UvData
|
---|
| 772 | if isfield(XmlData,'GeometryCalib')
|
---|
| 773 | GeometryCalib=XmlData.GeometryCalib;
|
---|
| 774 | if isempty(GeometryCalib)
|
---|
| 775 | set(handles.pxcm,'String','')
|
---|
| 776 | set(handles.pycm,'String','')
|
---|
[39] | 777 | set(handles.transform_fct,'Value',1); % no transform by default
|
---|
[2] | 778 | else
|
---|
| 779 | if (isfield(GeometryCalib,'R')& ~isequal(GeometryCalib.R(2,1),0) & ~isequal(GeometryCalib.R(1,2),0)) |...
|
---|
| 780 | (isfield(GeometryCalib,'kappa1')& ~isequal(GeometryCalib.kappa1,0))
|
---|
| 781 | set(handles.pxcm,'String','var')
|
---|
| 782 | set(handles.pycm,'String','var')
|
---|
| 783 | else
|
---|
| 784 | pixcmx=GeometryCalib.f*GeometryCalib.R(1,1)*GeometryCalib.sx/(GeometryCalib.Tz*GeometryCalib.dpx);
|
---|
| 785 | pixcmy=GeometryCalib.f*GeometryCalib.R(2,2)/(GeometryCalib.Tz*GeometryCalib.dpy);
|
---|
| 786 | set(handles.pxcm,'String',num2str(pixcmx))
|
---|
| 787 | set(handles.pycm,'String',num2str(pixcmy))
|
---|
| 788 | end
|
---|
[39] | 789 | set(handles.transform_fct,'Value',2); % phys transform by default
|
---|
[2] | 790 | if isfield(GeometryCalib,'SliceCoord')
|
---|
| 791 | siz=size(GeometryCalib.SliceCoord);
|
---|
| 792 | if siz(1)>1
|
---|
| 793 | NbSlice=siz(1);
|
---|
| 794 | set(handles.slices,'Visible','on')
|
---|
| 795 | set(handles.slices,'Value',1)
|
---|
| 796 | end
|
---|
| 797 | set(handles.nb_slice,'String',num2str(NbSlice))
|
---|
| 798 | slices_Callback(hObject, eventdata, handles)
|
---|
| 799 | % Coord=UvData.XmlData.GeometryCalib.SliceCoord;
|
---|
| 800 | % ZIndex=num_i1-NbSlice*(floor((num_i1-1)/NbSlice));
|
---|
| 801 | end
|
---|
| 802 | end
|
---|
| 803 | end
|
---|
| 804 |
|
---|
| 805 | %update the data attached to the uvmat interface
|
---|
| 806 | set(handles.nb_slice,'String',num2str(NbSlice))
|
---|
| 807 | if ~isempty(TimeUnit)
|
---|
| 808 | set(handles.time_txt,'String',['time (' TimeUnit ')'])
|
---|
| 809 | end
|
---|
| 810 | %set(handles.DtUnit,'String',['10^(-3)' TimeUnit])
|
---|
| 811 | UvData.TimeUnit=TimeUnit;
|
---|
| 812 | UvData.XmlData=XmlData;
|
---|
| 813 | UvData.NewSeries=1;
|
---|
[59] | 814 | set(handles.uvmat,'UserData',UvData)
|
---|
[2] | 815 |
|
---|
| 816 | %display warning message
|
---|
| 817 | if ~isequal(warntext,'')
|
---|
| 818 | msgbox_uvmat('WARNING',warntext);
|
---|
| 819 | end
|
---|
| 820 |
|
---|
| 821 | % set default options in menu 'Fields'
|
---|
| 822 | if testima
|
---|
| 823 | set(handles.Fields,'Value',1) % set menu to 'image'
|
---|
| 824 | set(handles.Fields,'String',{'image';'get_field...';'velocity';'vort';'div';'more...'})
|
---|
[45] | 825 | elseif isequal(FileExt,'.nc')||isequal(FileExt,'.cdf')
|
---|
[56] | 826 | Data=nc2struct(FileName,'ListGlobalAttribute','absolut_time_T0','civ');
|
---|
[2] | 827 | col_vec=get(handles.col_vec,'String');
|
---|
[59] | 828 | if ~isempty(Data.absolut_time_T0)&& ~isequal(Data.civ,0)
|
---|
[2] | 829 | set(handles.Fields,'String',{'image';'get_field...';'velocity';'vort';'div';'more...'})
|
---|
| 830 | set(handles.Fields,'Value',3) % set menu to 'velocity'
|
---|
| 831 | col_vec{1}='ima_cor';
|
---|
[45] | 832 | else %general netcdf file (not civx)
|
---|
[2] | 833 | set(handles.Fields,'Value',1) % set menu to 'get_field...
|
---|
| 834 | set(handles.Fields,'String',{'get_field...'})
|
---|
| 835 | col_vec{1}='get_field...';
|
---|
| 836 | end
|
---|
| 837 | set(handles.col_vec,'String',col_vec)
|
---|
| 838 | else
|
---|
| 839 | msgbox_uvmat('ERROR',['invalid input file extension ' FileExt])
|
---|
| 840 | return
|
---|
| 841 | end
|
---|
| 842 |
|
---|
| 843 | % set index navigation options and refresh plots
|
---|
| 844 | set(handles.RootPath,'BackgroundColor',[1 1 1])
|
---|
| 845 | drawnow
|
---|
| 846 | set_scan_options(hObject, eventdata, handles)
|
---|
| 847 |
|
---|
| 848 |
|
---|
| 849 | %-------------------------------------------------------------------
|
---|
| 850 | %-- set index navigation options for new series input and refresh plot
|
---|
| 851 | %-------------------------------------------------------------------
|
---|
| 852 | function set_scan_options(hObject, eventdata, handles)
|
---|
| 853 |
|
---|
| 854 | % set the corresponding index navigation options (TO CHECK WITH THE SECOND FIELD)
|
---|
| 855 | NomType=get(handles.FileIndex,'UserData');
|
---|
| 856 | NomType_1=get(handles.FileIndex_1,'UserData');
|
---|
| 857 | state_j='off'; %default
|
---|
| 858 | scan_option='i';
|
---|
| 859 | switch NomType
|
---|
| 860 | case {'_i_j','_i_j1-j2','_i1-i2_j','#_ab'},% two navigation indices
|
---|
| 861 | state_j='on';
|
---|
| 862 | if exist('nbfield','var') && isequal(nbfield,1)
|
---|
| 863 | scan_option='j';
|
---|
| 864 | else
|
---|
| 865 | scan_option='i';
|
---|
| 866 | end
|
---|
| 867 | end
|
---|
| 868 | if ~isempty(NomType_1)
|
---|
| 869 | switch NomType_1
|
---|
| 870 | case {'_i_j','_i_j1-j2','_i1-i2_j','#_ab'},% two navigation indices
|
---|
| 871 | state_j='on';
|
---|
| 872 | if exist('nbfield','var') && isequal(nbfield,1)
|
---|
| 873 | scan_option='j';
|
---|
| 874 | else
|
---|
| 875 | scan_option='i';
|
---|
| 876 | end
|
---|
| 877 | end
|
---|
| 878 | end
|
---|
| 879 | if isequal(scan_option,'i')
|
---|
| 880 | set(handles.scan_i,'Value',1)
|
---|
| 881 | scan_i_Callback(hObject, eventdata, handles);
|
---|
| 882 | else
|
---|
| 883 | set(handles.scan_j,'Value',1)
|
---|
| 884 | scan_j_Callback(hObject, eventdata, handles);
|
---|
| 885 | end
|
---|
| 886 | set(handles.scan_j,'Visible',state_j)
|
---|
| 887 | set(handles.j1,'Visible',state_j)
|
---|
| 888 | set(handles.j2,'Visible',state_j)
|
---|
| 889 | set(handles.last_j,'Visible',state_j);
|
---|
| 890 | set(handles.frame_j,'Visible',state_j);
|
---|
| 891 | set(handles.j_text,'Visible',state_j);
|
---|
| 892 |
|
---|
| 893 | % view the field
|
---|
| 894 | run0_Callback(hObject, eventdata, handles); %view field
|
---|
| 895 | mask_test=get(handles.mask_test,'value');
|
---|
| 896 | if mask_test
|
---|
| 897 | MaskData=get(handles.mask_test,'UserData');
|
---|
| 898 | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle)
|
---|
| 899 | delete(MaskData.maskhandle) %delete old mask
|
---|
| 900 | end
|
---|
| 901 | mask_test_Callback(hObject, eventdata, handles)
|
---|
| 902 | end
|
---|
[59] | 903 |
|
---|
[2] | 904 | %-------------------------------------------------------------------
|
---|
| 905 | function MenuBrowse_1_Callback(hObject, eventdata, handles)
|
---|
| 906 | %-------------------------------------------------------------------
|
---|
| 907 | huvmat=get(handles.run0,'parent');
|
---|
| 908 | UvData=get(huvmat,'UserData');
|
---|
| 909 |
|
---|
| 910 | RootPath=get(handles.RootPath,'String');
|
---|
| 911 | [FileName, PathName, filterindex] = uigetfile( ...
|
---|
| 912 | {'*.xml;*.xls;*.civ;*.jpg;*.png;*.avi;*.AVI;*.nc;*.cmx;*.fig;*.log;*.dat', ' (*.xml,*.xls,*.civ, *.jpg,*.png, *.avi,*.nc,*.cmx ,*.fig,*.log,*.dat)';
|
---|
| 913 | '*.xml', '.xml files '; ...
|
---|
| 914 | '*.xls', '.xls files '; ...
|
---|
| 915 | '*.civ', '.civ files '; ...
|
---|
| 916 | '*.jpg','.jpg image files'; ...
|
---|
| 917 | '*.png','.png image files'; ...
|
---|
| 918 | '*.avi;*.AVI','.avi movie files'; ...
|
---|
| 919 | '*.nc','.netcdf files'; ...
|
---|
| 920 | '*.cdf','.netcdf files'; ...
|
---|
| 921 | '*.cmx','.cmx text files';...
|
---|
| 922 | '*.cmx2','.cmx2 text files';...
|
---|
| 923 | '*.fig','.fig files (matlab fig)';...
|
---|
| 924 | '*.log','.log text files ';...
|
---|
| 925 | '*.dat','.dat text files ';...
|
---|
| 926 | '*.*', 'All Files (*.*)'}, ...
|
---|
| 927 | 'Pick a file',RootPath);
|
---|
| 928 | fileinput_1=[PathName FileName];%complete file name
|
---|
| 929 | testblank=findstr(fileinput_1,' ');%look for blanks
|
---|
| 930 | if ~isempty(testblank)
|
---|
[38] | 931 | msgbox_uvmat('ERROR',['The input file name ' fileinput_1 ' contains blank character : This is not allowed. Please change name'])
|
---|
[2] | 932 | return
|
---|
| 933 | end
|
---|
| 934 | sizf=size(fileinput_1);
|
---|
| 935 | if (~ischar(fileinput_1)|~isequal(sizf(1),1)),return;end
|
---|
| 936 |
|
---|
| 937 | % refresh the current displayed field
|
---|
| 938 | display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 939 |
|
---|
| 940 | %update list of recent files in the menubar
|
---|
| 941 | MenuFile_1=fileinput_1;
|
---|
| 942 | MenuFile_2=get(handles.MenuFile_1,'Label');
|
---|
| 943 | MenuFile_3=get(handles.MenuFile_2,'Label');
|
---|
| 944 | MenuFile_4=get(handles.MenuFile_3,'Label');
|
---|
| 945 | MenuFile_5=get(handles.MenuFile_4,'Label');
|
---|
| 946 | set(handles.MenuFile_1,'Label',MenuFile_1)
|
---|
| 947 | set(handles.MenuFile_2,'Label',MenuFile_2)
|
---|
| 948 | set(handles.MenuFile_3,'Label',MenuFile_3)
|
---|
| 949 | set(handles.MenuFile_4,'Label',MenuFile_4)
|
---|
| 950 | set(handles.MenuFile_5,'Label',MenuFile_5)
|
---|
| 951 | set(handles.MenuFile_1_1,'Label',MenuFile_1)
|
---|
| 952 | set(handles.MenuFile_2_1,'Label',MenuFile_2)
|
---|
| 953 | set(handles.MenuFile_3_1,'Label',MenuFile_3)
|
---|
| 954 | set(handles.MenuFile_4_1,'Label',MenuFile_4)
|
---|
| 955 | set(handles.MenuFile_5_1,'Label',MenuFile_5)
|
---|
| 956 | dir_perso=prefdir;
|
---|
| 957 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat');
|
---|
| 958 | if exist(profil_perso,'file')
|
---|
| 959 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-append'); %store the file names for future opening of uvmat
|
---|
| 960 | else
|
---|
| 961 | txt=ver;
|
---|
| 962 | Release=txt(1).Release;
|
---|
| 963 | relnumb=str2num(Release(3:4));
|
---|
| 964 | if relnumb >= 14
|
---|
| 965 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5','-V6'); %store the file names for future opening of uvmat
|
---|
| 966 | else
|
---|
| 967 | save (profil_perso,'MenuFile_1','MenuFile_2','MenuFile_3','MenuFile_4', 'MenuFile_5'); %store the file names for future opening of uvmat
|
---|
| 968 | end
|
---|
| 969 | end
|
---|
| 970 |
|
---|
| 971 | % --------------------------------------------------------------------
|
---|
| 972 | function MenuFile_1_1_Callback(hObject, eventdata, handles)
|
---|
| 973 | fileinput_1=get(handles.MenuFile_1_1,'Label');
|
---|
| 974 | display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 975 |
|
---|
| 976 | % --------------------------------------------------------------------
|
---|
| 977 | function MenuFile_2_1_Callback(hObject, eventdata, handles)
|
---|
| 978 | fileinput_1=get(handles.MenuFile_2_1,'Label');
|
---|
| 979 | display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 980 |
|
---|
| 981 | % --------------------------------------------------------------------
|
---|
| 982 | function MenuFile_3_1_Callback(hObject, eventdata, handles)
|
---|
| 983 | fileinput_1=get(handles.MenuFile_3_1,'Label');
|
---|
| 984 | display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 985 |
|
---|
| 986 | % --------------------------------------------------------------------
|
---|
| 987 | function MenuFile_4_1_Callback(hObject, eventdata, handles)
|
---|
| 988 | fileinput_1=get(handles.MenuFile_4_1,'Label');
|
---|
| 989 | display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 990 |
|
---|
| 991 | % --------------------------------------------------------------------
|
---|
| 992 | function MenuFile_5_1_Callback(hObject, eventdata, handles)
|
---|
| 993 | fileinput_1=get(handles.MenuFile_5_1,'Label');
|
---|
| 994 | display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 995 |
|
---|
| 996 | %-----------------------------------------------------------------
|
---|
| 997 | % fills the edit boxes RootPath, RootFile,NomType...from an input file name 'fileinput'
|
---|
| 998 | %----------------------------------------------------------------
|
---|
| 999 | function display_file_name_1(hObject,eventdata,handles,fileinput_1)
|
---|
| 1000 |
|
---|
| 1001 | %[path,name,ext]=fileparts(fileinput_1);
|
---|
| 1002 | [RootPath_1,RootFile_1,field_count,str2,str_a,str_b,FileExt_1,NomType_1,SubDir_1]=name2display(fileinput_1);
|
---|
| 1003 | nbfield_1=1; %default
|
---|
| 1004 | ext_test=FileExt_1;%default
|
---|
| 1005 | form=imformats(FileExt_1(2:end));
|
---|
| 1006 | if ~isempty(form) % if the extension corresponds to an image format recognized by Matlab
|
---|
| 1007 | imainfo=imfinfo(fileinput_1);
|
---|
| 1008 | nbfield_1=length(imainfo);
|
---|
| 1009 | ext_test='.image';
|
---|
| 1010 | elseif isequal(lower(FileExt_1),'.avi')
|
---|
| 1011 | info=aviinfo(fileinput_1);
|
---|
| 1012 | nbfield_1=info.NumFrames;
|
---|
| 1013 | ext_test='.image';
|
---|
| 1014 | end
|
---|
| 1015 |
|
---|
| 1016 | %open directly fig or text files
|
---|
| 1017 | switch ext_test
|
---|
| 1018 | case {'.civ','.log','.cmx','.cmx2','.txt'} %display text file
|
---|
| 1019 | edit(fileinput)
|
---|
| 1020 | return
|
---|
| 1021 | case '.fig' %display matlab figure
|
---|
| 1022 | hfig=open(fileinput);
|
---|
| 1023 | set(hfig,'WindowButtonMotionFcn','mouse_motion')%set mouse action functio
|
---|
| 1024 | set(hfig,'WindowButtonUpFcn','mouse_up')%set mouse click action function
|
---|
| 1025 | set(hfig,'WindowButtonUpFcn','mouse_down')%set mouse click action function
|
---|
| 1026 | return
|
---|
| 1027 | case {'.xml','.xls'} % edit xml or Excel files
|
---|
| 1028 | heditxml=editxml(fileinput);
|
---|
| 1029 | return
|
---|
| 1030 | case {'.image','.nc','.cdf'}
|
---|
| 1031 | % set(handles.FileIndex,'UserData',NomType_1);
|
---|
| 1032 | otherwise
|
---|
[38] | 1033 | msgbox_uvmat(['invalid input file extension ' FileExt_1 ' for uvmat'],'ERROR')
|
---|
[2] | 1034 | return
|
---|
| 1035 | end
|
---|
| 1036 |
|
---|
| 1037 | % test for image series in a single file and synchronise file indices of the two series
|
---|
| 1038 | if nbfield_1 >1 %case of image with multiple frames
|
---|
| 1039 | if nbfield_1 < num_i1
|
---|
[38] | 1040 | msgbox_uvmat('ERROR','current frame index beyond the input movie length')
|
---|
[2] | 1041 | return
|
---|
| 1042 | else
|
---|
| 1043 | NomType_1='*'; %indicate a set of indexed frames within a single file
|
---|
| 1044 | filename_new=fileinput_1;
|
---|
| 1045 | end
|
---|
| 1046 | else % cases of data files
|
---|
| 1047 | RootPath=get(handles.RootPath,'String');
|
---|
| 1048 | RootFile=get(handles.RootFile,'String');
|
---|
| 1049 | FileBase=fullfile(RootPath,RootFile);
|
---|
| 1050 | FileBase_1=fullfile(RootPath_1,RootFile_1);
|
---|
| 1051 | if isequal(FileBase,FileBase_1)
|
---|
| 1052 | filename_new=fileinput_1;
|
---|
| 1053 | else
|
---|
| 1054 | num_i1=stra2num(get(handles.i1,'String'));%get the current file indices from counters
|
---|
| 1055 | num_j1=stra2num(get(handles.j1,'String'));
|
---|
| 1056 | num_i2=stra2num(get(handles.i2,'String'));
|
---|
| 1057 | num_j2=stra2num(get(handles.j2,'String'));
|
---|
| 1058 | [filename_new,idetect]=...
|
---|
| 1059 | name_generator(FileBase_1,num_i1,num_j1,FileExt_1,NomType_1,1,num_i2,num_j2,SubDir_1);%create name with indices synchronised with the first file
|
---|
| 1060 | indices=''; %default
|
---|
| 1061 | if ~idetect
|
---|
[38] | 1062 | msgbox_uvmat('ERROR','second input file with indices corresponding to the first one does not exist')
|
---|
[2] | 1063 | return
|
---|
| 1064 | end
|
---|
| 1065 | end
|
---|
| 1066 | end
|
---|
| 1067 | set(handles.FileIndex,'UserData',NomType_1);
|
---|
| 1068 |
|
---|
| 1069 | % make visible and fill the second raw of edit boxes
|
---|
| 1070 | set(handles.RootPath_1,'Visible','on')
|
---|
| 1071 | set(handles.RootFile_1,'Visible','on')
|
---|
| 1072 | set(handles.SubDir_1,'Visible','on');
|
---|
| 1073 | set(handles.FileIndex_1,'Visible','on');
|
---|
| 1074 | set(handles.FileExt_1,'Visible','on');
|
---|
| 1075 | [FileName,RootPath,FileBase,FileIndices,FileExt,SubDir]=read_file_boxes(handles);
|
---|
| 1076 | if isequal(FileBase,FileBase_1)
|
---|
| 1077 | set(handles.RootPath_1,'String','"')
|
---|
| 1078 | set(handles.RootFile_1,'String','"');
|
---|
| 1079 | else
|
---|
| 1080 | set(handles.RootPath_1,'String',RootPath_1)
|
---|
| 1081 | set(handles.RootFile_1,'String',['/' RootFile_1]);
|
---|
| 1082 | end
|
---|
| 1083 | if isequal(SubDir_1,'')
|
---|
| 1084 | set(handles.SubDir_1,'String','');
|
---|
| 1085 | FileBaseSub_1=FileBase_1;
|
---|
| 1086 | else
|
---|
| 1087 | set(handles.SubDir_1,'String',['/' SubDir_1]);
|
---|
| 1088 | FileBaseSub_1=fullfile(FileBase_1,SubDir_1);
|
---|
| 1089 | end
|
---|
| 1090 | indices=filename_new(length(FileBaseSub_1)+1:end);
|
---|
| 1091 | indices(end-length(FileExt_1)+1:end)=[]; %remove extension
|
---|
| 1092 | set(handles.FileIndex_1,'String',indices)
|
---|
| 1093 | set(handles.FileIndex_1,'UserData',NomType_1)
|
---|
| 1094 | set(handles.FileExt_1,'String',FileExt_1);
|
---|
| 1095 |
|
---|
| 1096 | % default choice of fields
|
---|
| 1097 | if isequal(ext_test,'.image')
|
---|
| 1098 | set(handles.Fields_1,'String',{'';'image';'get_field...';'velocity';'vort';'div';'more...'})
|
---|
| 1099 | set(handles.Fields_1,'Value',2) % set menu to 'image'
|
---|
| 1100 | elseif isequal(FileExt_1,'.nc')|isequal(FileExt_1,'.cdf')
|
---|
| 1101 | Data=nc2struct(fileinput_1,[]);
|
---|
| 1102 | if isfield(Data,'absolut_time_T0')
|
---|
| 1103 | set(handles.Fields_1,'String',{'';'image';'get_field...';'velocity';'vort';'div';'more...'})
|
---|
| 1104 | set(handles.Fields_1,'Value',4) % set menu to 'velocity'
|
---|
| 1105 | else
|
---|
| 1106 | set(handles.Fields_1,'Value',2) % set menu to 'get_field...'
|
---|
| 1107 | set(handles.Fields_1,'String',{'';'get_field...'});
|
---|
| 1108 | end
|
---|
| 1109 | end
|
---|
| 1110 | set(handles.SubField,'Visible','on')
|
---|
| 1111 | set(handles.SubField,'Value',1)
|
---|
| 1112 | RootPath_1_Callback(hObject,eventdata,handles);
|
---|
| 1113 |
|
---|
| 1114 |
|
---|
| 1115 | %-----------------------------------------------------
|
---|
| 1116 | function RootPath_1_Callback(hObject,eventdata,handles)
|
---|
| 1117 | update_rootinfo_1(hObject,eventdata,handles)
|
---|
| 1118 |
|
---|
| 1119 | %-------------------------------------------------------------------
|
---|
| 1120 | function RootFile_1_Callback(hObject, eventdata, handles)
|
---|
| 1121 | update_rootinfo_1(hObject,eventdata,handles)
|
---|
| 1122 | %-------------------------------------------------------------------
|
---|
| 1123 |
|
---|
| 1124 | %-------------------------------------------------------------------
|
---|
| 1125 | function update_rootinfo_1(hObject,eventdata,handles) %A REVOIR
|
---|
| 1126 |
|
---|
| 1127 | set(handles.RootPath_1,'BackgroundColor',[1 1 0])% indicate active program by yellow color
|
---|
| 1128 | drawnow
|
---|
| 1129 | huvmat=get(handles.RootPath,'parent');
|
---|
| 1130 | UvData=get(huvmat,'UserData');%huvmat=handles of the uvmat interface
|
---|
| 1131 | UvData.NewSeries=1; %flag for run0: begin a new series
|
---|
| 1132 |
|
---|
| 1133 | [FileName,RootPath,FileBase,FileIndices,FileExt]=read_file_boxes_1(handles);
|
---|
| 1134 | if ~exist(FileName,'file')
|
---|
| 1135 | msgbox_uvmat('ERROR',['input file ' FileName ' not found']);
|
---|
| 1136 | end
|
---|
| 1137 | nbfield_1=[];%default
|
---|
| 1138 | nburst_1=[];%default
|
---|
| 1139 | XmlData.Time=[];
|
---|
| 1140 | XmlData.GeometryCalib=[];%default
|
---|
| 1141 | TimeUnit=[];
|
---|
| 1142 | if isfield(UvData,'TimeUnit')
|
---|
| 1143 | TimeUnit=UvData.TimeUnit;
|
---|
| 1144 | end
|
---|
| 1145 | TimeUnit_1=[];
|
---|
| 1146 | testima=0; %test for image input
|
---|
| 1147 | if isequal(lower(FileExt),'.avi') %.avi file
|
---|
| 1148 | testima=1;
|
---|
| 1149 | info=aviinfo([FileBase FileIndices FileExt]);
|
---|
| 1150 | nbfield_1=info.NumFrames;
|
---|
| 1151 | nburst_1=1;
|
---|
| 1152 | %set(handles.last_i,'String',num2str(info.NumFrames));%fills last_field box
|
---|
| 1153 | set(handles.Dt_txt,'String',['Dt=' num2str(1000/info.FramesPerSecond) 'ms']);%display the elementary time interval in millisec
|
---|
| 1154 | % set(handles.dt,'UserData',info.FramesPerSecond);
|
---|
| 1155 | time=[0:1/info.FramesPerSecond:(info.NumFrames-1)/info.FramesPerSecond]';
|
---|
| 1156 | npx=get(handles.npx,'String');
|
---|
| 1157 | npy=get(handles.npy,'String');
|
---|
| 1158 | if isequal(npx,'') || isequal(npy,'')
|
---|
| 1159 | set(handles.npx,'String',num2str(info.Width));%fills nbre of pixels x box
|
---|
| 1160 | set(handles.npy,'String',num2str(info.Height));%fills nbre of pixels y box
|
---|
| 1161 | end
|
---|
| 1162 | elseif ~isempty(imformats(FileExt(2:end))) %&& isequal(NomType,'*')% multi-frame image
|
---|
| 1163 | testima=1;
|
---|
| 1164 | imainfo=imfinfo([FileBase FileIndices FileExt]);
|
---|
| 1165 | if length(imainfo) >1 %case of image with multiple frames
|
---|
| 1166 | nbfield_1=length(imainfo);
|
---|
| 1167 | nburst_1=1;
|
---|
| 1168 | %set(handles.last_i,'String',num2str(length(imainfo)));%fills last_field box
|
---|
| 1169 | end
|
---|
| 1170 | else
|
---|
| 1171 | %set(handles.last_i,'String','');%fills last_field box
|
---|
| 1172 | set(handles.npx,'String','');%fills nbre of pixels x box
|
---|
| 1173 | set(handles.npy,'String','');%fills nbre of pixels y box
|
---|
| 1174 | end
|
---|
| 1175 |
|
---|
| 1176 | % find scaling parameters
|
---|
| 1177 | filexml=[FileBase '.xml'];
|
---|
| 1178 | fileciv=[FileBase '.civ'];
|
---|
| 1179 | warntext='';%default warning text
|
---|
| 1180 | if exist(filexml,'file')
|
---|
| 1181 | [XmlData,warntext]=imadoc2struct(filexml);
|
---|
| 1182 | if ~isempty(warntext)
|
---|
| 1183 | msgbox_uvmat('WARNING',warntext)
|
---|
| 1184 | end
|
---|
| 1185 | if isfield(XmlData,'Camera')
|
---|
| 1186 | % if isfield(XmlData.Camera,'NbSlice')&& ~isempty(XmlData.Camera.NbSlice)
|
---|
| 1187 | % NbSlice=XmlData.Camera.NbSlice;
|
---|
| 1188 | % end
|
---|
| 1189 | if isfield(XmlData.Camera,'TimeUnit')&& ~isempty(XmlData.Camera.TimeUnit)
|
---|
| 1190 | TimeUnit=XmlData.Camera.TimeUnit;
|
---|
| 1191 | end
|
---|
| 1192 | end
|
---|
| 1193 | elseif exist(fileciv,'file')% if .civ file found
|
---|
| 1194 | [error,XmlData.Time,TimeUnit,mode,npx,npy,pxcmx,pxcmy]=read_imatext([FileBase '.civ']);
|
---|
| 1195 | GeometryCalib.R=[pxcmx 0 0; 0 pxcmy 0;0 0 0];
|
---|
| 1196 | GeometryCalib.Tx=0;
|
---|
| 1197 | GeometryCalib.Ty=0;
|
---|
| 1198 | GeometryCalib.Tz=1;
|
---|
| 1199 | GeometryCalib.dpx=1;
|
---|
| 1200 | GeometryCalib.dpy=1;
|
---|
| 1201 | GeometryCalib.sx=1;
|
---|
| 1202 | GeometryCalib.Cx=0;
|
---|
| 1203 | GeometryCalib.Cy=0;
|
---|
| 1204 | GeometryCalib.f=1;
|
---|
| 1205 | GeometryCalib.kappa1=0;
|
---|
| 1206 | GeometryCalib.CoordUnit='cm';
|
---|
| 1207 | XmlData.GeometryCalib=GeometryCalib;
|
---|
| 1208 | if error==2, warntext=['no file ' FileBase '.civ'];
|
---|
| 1209 | elseif error==1, warntext='inconsistent number of fields in the .civ file';
|
---|
| 1210 | end
|
---|
| 1211 |
|
---|
| 1212 | set(handles.npx,'String',num2str(npx));%fills nbre of pixels x box
|
---|
| 1213 | set(handles.npy,'String',num2str(npy));%fills nbre of pixels y box
|
---|
| 1214 | set(handles.pxcm,'String',num2str(pxcmx));%fills scale x (pixel/cm) box
|
---|
| 1215 | set(handles.pycm,'String',num2str(pxcmy));%fills scale y (pixel/cm) box
|
---|
| 1216 | set(handles.pxcm,'Visible','on');%fills scale x (pixel/cm) box
|
---|
| 1217 | set(handles.pycm,'Visible','on');%fills scale y (pixel/cm) box
|
---|
| 1218 | end
|
---|
| 1219 | if ~isempty(TimeUnit_1) && ~isequal(TimeUnit_1,TimeUnit)
|
---|
[38] | 1220 | msgbox_uvmat('WARNING','the time units for the second series differs from the first one')
|
---|
[2] | 1221 | end
|
---|
| 1222 |
|
---|
| 1223 | % store last index in handles.lat_i and .last_j
|
---|
| 1224 | if ~isempty(XmlData.Time)
|
---|
| 1225 | nbfield_1=size(XmlData.Time,1);
|
---|
| 1226 | nburst_1=size(XmlData.Time,2);
|
---|
| 1227 | end
|
---|
| 1228 | last_i_cell=get(handles.last_i,'String');
|
---|
| 1229 | if isempty(nbfield_1)
|
---|
| 1230 | last_i_cell{2}='';
|
---|
| 1231 | else
|
---|
| 1232 | last_i_cell{2}=num2str(nbfield_1);
|
---|
| 1233 | end
|
---|
| 1234 | set(handles.last_i,'String',last_i_cell)
|
---|
| 1235 | last_j_cell=get(handles.last_j,'String');
|
---|
| 1236 | if isempty(nburst_1)
|
---|
| 1237 | last_j_cell{2}='';
|
---|
| 1238 | else
|
---|
| 1239 | last_j_cell{2}=num2str(nburst_1);
|
---|
| 1240 | end
|
---|
| 1241 | set(handles.last_j,'String',last_j_cell);
|
---|
| 1242 | if ~isequal(last_i_cell{1},last_i_cell{2}) || ~isequal(last_j_cell{1},last_j_cell{2})
|
---|
[38] | 1243 | msgbox_uvmat('WARNING','the numbers of input file of the second series differs from the first one')
|
---|
[2] | 1244 | end
|
---|
| 1245 |
|
---|
| 1246 | % store calibration data
|
---|
| 1247 | GeometryCalib=XmlData.GeometryCalib;
|
---|
| 1248 | if isempty(GeometryCalib)
|
---|
| 1249 | if isfield(UvData, 'GeometryCalib_1')
|
---|
| 1250 | UvData=rmfield(UvData,'GeometryCalib_1');
|
---|
| 1251 | end
|
---|
| 1252 | else
|
---|
| 1253 | UvData.GeometryCalib_1=GeometryCalib;
|
---|
| 1254 | if (isfield(GeometryCalib,'R')& ~isequal(GeometryCalib.R(2,1),0) & ~isequal(GeometryCalib.R(1,2),0)) |...
|
---|
| 1255 | (isfield(GeometryCalib,'kappa1')& ~isequal(GeometryCalib.kappa1,0))
|
---|
| 1256 | set(handles.pxcm,'String','var')
|
---|
| 1257 | set(handles.pycm,'String','var')
|
---|
| 1258 | else
|
---|
| 1259 | pixcmx=GeometryCalib.f*GeometryCalib.R(1,1)*GeometryCalib.sx/(GeometryCalib.Tz*GeometryCalib.dpx);
|
---|
| 1260 | pixcmy=GeometryCalib.f*GeometryCalib.R(2,2)/(GeometryCalib.Tz*GeometryCalib.dpy);
|
---|
| 1261 | set(handles.pxcm,'String',num2str(pixcmx))
|
---|
| 1262 | set(handles.pycm,'String',num2str(pixcmy))
|
---|
| 1263 | end
|
---|
| 1264 | end
|
---|
| 1265 | UvData.XmlData_1=XmlData;
|
---|
| 1266 | set(huvmat,'UserData',UvData)%update the data attached to the uvmat interface
|
---|
| 1267 |
|
---|
| 1268 | if ~isequal(warntext,'')
|
---|
[38] | 1269 | msgbox_uvmat('WARNING',warntext)
|
---|
[2] | 1270 | end
|
---|
| 1271 |
|
---|
| 1272 | set(handles.RootPath_1,'BackgroundColor',[1 1 1])% signa the end the input operation
|
---|
| 1273 | drawnow
|
---|
| 1274 |
|
---|
| 1275 | set_scan_options(hObject, eventdata, handles)
|
---|
| 1276 |
|
---|
| 1277 | %---------------------------------------------------
|
---|
| 1278 | % switch file index scanning options scan_i and scan_j in an exclusive way
|
---|
| 1279 | function scan_i_Callback(hObject, eventdata, handles)
|
---|
| 1280 | %---------------------------------------------------
|
---|
| 1281 | if get(handles.scan_i,'Value')==1
|
---|
| 1282 | set(handles.scan_i,'BackgroundColor',[1 1 0])
|
---|
| 1283 | set(handles.scan_j,'Value',0)
|
---|
| 1284 | set(handles.scan_j,'BackgroundColor',[0.831 0.816 0.784])
|
---|
| 1285 | else
|
---|
| 1286 | set(handles.scan_i,'BackgroundColor',[0.831 0.816 0.784])
|
---|
| 1287 | set(handles.scan_j,'Value',1)
|
---|
| 1288 | set(handles.scan_j,'BackgroundColor',[1 1 0])
|
---|
| 1289 | end
|
---|
[45] | 1290 |
|
---|
[2] | 1291 | %-------------------------------------------------------------------
|
---|
| 1292 | % switch file index scanning options scan_i and scan_j in an exclusive way
|
---|
| 1293 | function scan_j_Callback(hObject, eventdata, handles)
|
---|
| 1294 | %-------------------------------------------------------------------
|
---|
| 1295 | if get(handles.scan_j,'Value')==1
|
---|
| 1296 | set(handles.scan_j,'BackgroundColor',[1 1 0])
|
---|
| 1297 | set(handles.scan_i,'Value',0)
|
---|
| 1298 | set(handles.scan_i,'BackgroundColor',[0.831 0.816 0.784])
|
---|
| 1299 | else
|
---|
| 1300 | set(handles.scan_j,'BackgroundColor',[0.831 0.816 0.784])
|
---|
| 1301 | set(handles.scan_i,'Value',1)
|
---|
| 1302 | set(handles.scan_i,'BackgroundColor',[1 1 0])
|
---|
| 1303 | end
|
---|
| 1304 |
|
---|
| 1305 | %-------------------------------------------------------------------
|
---|
| 1306 | function i1_Callback(hObject, eventdata, handles)
|
---|
| 1307 | %-------------------------------------------------------------------
|
---|
| 1308 | % [filebase,num1,num_a,num2,num_b,ext,NomType,subdir]=read_input_file(handles);
|
---|
[45] | 1309 | %[FileName,RootPath,filebase,xx,FileExt]=read_file_boxes(handles);
|
---|
[2] | 1310 | NomType=get(handles.FileIndex,'UserData');
|
---|
| 1311 | num1=stra2num(get(handles.i1,'String'));
|
---|
| 1312 | num2=stra2num(get(handles.i2,'String'));
|
---|
| 1313 | num_a=stra2num(get(handles.j1,'String'));
|
---|
| 1314 | num_b=stra2num(get(handles.j2,'String'));
|
---|
| 1315 | indices=name_generator('',num1,num_a,'',NomType,1,num2,num_b,'');
|
---|
| 1316 | set(handles.FileIndex,'String',indices)
|
---|
| 1317 | if get(handles.SubField,'Value')==1
|
---|
| 1318 | NomType_1=get(handles.FileIndex_1,'String');
|
---|
| 1319 | FileExt_1=get(handles.FileExt_1,'String');
|
---|
| 1320 | [P,F,str1,str2,str_a,str_b,Ext,NomType_1]=name2display(['xx' NomType_1 FileExt_1]);
|
---|
| 1321 | indices=name_generator('',num1,num_a,'',NomType_1,1,num2,num_b,'');
|
---|
| 1322 | set(handles.FileIndex_1,'String',indices)
|
---|
| 1323 | end
|
---|
| 1324 | run0_Callback(hObject, eventdata, handles)
|
---|
| 1325 |
|
---|
| 1326 | %-------------------------------------------------------------------
|
---|
| 1327 | function i2_Callback(hObject, eventdata, handles)
|
---|
| 1328 | i1_Callback(hObject, eventdata, handles)
|
---|
| 1329 | %-------------------------------------------------------------------
|
---|
| 1330 |
|
---|
| 1331 | %-------------------------------------------------------------------
|
---|
| 1332 | function j1_Callback(hObject, eventdata, handles)
|
---|
| 1333 | i1_Callback(hObject, eventdata, handles)
|
---|
| 1334 | %-------------------------------------------------------------------
|
---|
| 1335 |
|
---|
| 1336 | %-------------------------------------------------------------------
|
---|
| 1337 | function j2_Callback(hObject, eventdata, handles)
|
---|
| 1338 | i1_Callback(hObject, eventdata, handles)
|
---|
| 1339 | %-------------------------------------------------------------------
|
---|
| 1340 |
|
---|
| 1341 | %-------------------------------------------------------------------
|
---|
| 1342 | function slices_Callback(hObject, eventdata, handles)
|
---|
| 1343 | %-------------------------------------------------------------------
|
---|
| 1344 | if get(handles.slices,'Value')==1
|
---|
| 1345 | set(handles.slices,'BackgroundColor',[1 1 0])
|
---|
| 1346 | set(handles.nb_slice,'Visible','on')
|
---|
| 1347 | set(handles.z_text,'Visible','on')
|
---|
| 1348 | set(handles.z_index,'Visible','on')
|
---|
| 1349 | nb_slice_Callback(hObject, eventdata, handles)
|
---|
| 1350 | % z=mod(num_i1-1,nbslice)+1;
|
---|
| 1351 | % set(handles.z_index,'String',num2str(z))
|
---|
| 1352 | else
|
---|
| 1353 | set(handles.nb_slice,'Visible','off')
|
---|
| 1354 | set(handles.slices,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 1355 | set(handles.z_text,'Visible','off')
|
---|
| 1356 | set(handles.z_index,'Visible','off')
|
---|
| 1357 | set(handles.masklevel,'Value',1)
|
---|
| 1358 | set(handles.masklevel,'String',{'1'})
|
---|
| 1359 | end
|
---|
| 1360 |
|
---|
| 1361 | %-------------------------------------------------------------------
|
---|
| 1362 | function nb_slice_Callback(hObject, eventdata, handles)
|
---|
| 1363 | %-------------------------------------------------------------------
|
---|
| 1364 | num_i1=str2num(get(handles.i1,'String'));
|
---|
| 1365 | nbslice=str2num(get(handles.nb_slice,'String'));
|
---|
| 1366 | z=mod(num_i1-1,nbslice)+1;
|
---|
| 1367 | set(handles.z_index,'String',num2str(z))
|
---|
| 1368 | for ilist=1:nbslice
|
---|
| 1369 | list_index{ilist,1}=num2str(ilist);
|
---|
| 1370 | end
|
---|
| 1371 | set(handles.masklevel,'String',list_index)
|
---|
| 1372 | set(handles.masklevel,'Value',z)
|
---|
| 1373 |
|
---|
| 1374 |
|
---|
| 1375 | %-------------------------------------------------------------------
|
---|
| 1376 | % --- Executes on button press in view_xml.
|
---|
| 1377 | function view_xml_Callback(hObject, eventdata, handles)
|
---|
| 1378 | [FileName,RootPath,FileBase,FileIndices,FileExt]=read_file_boxes(handles);
|
---|
| 1379 | option=get(handles.view_xml,'String');
|
---|
| 1380 | if isequal(option,'view .xml')
|
---|
| 1381 | FileXml=[FileBase '.xml'];
|
---|
| 1382 | heditxml=editxml(FileXml);
|
---|
| 1383 | end
|
---|
| 1384 |
|
---|
| 1385 | %-------------------------------------------------------------------
|
---|
| 1386 | % --- Executes on button press in mask_test.
|
---|
| 1387 | function mask_test_Callback(hObject, eventdata, handles)
|
---|
| 1388 | %-------------------------------------------------------------------
|
---|
| 1389 | if isequal(get(handles.mask_test,'Value'),1)
|
---|
| 1390 | [FF,RootPath,FileBase]=read_file_boxes(handles);
|
---|
| 1391 | num_i1=stra2num(get(handles.i1,'String'));
|
---|
| 1392 | num_j1=stra2num(get(handles.j1,'String'));
|
---|
| 1393 | currentdir=pwd;
|
---|
| 1394 | cd(RootPath);
|
---|
| 1395 | maskfiles=dir('*_*mask_*.png');%look for a mask file
|
---|
| 1396 | cd(currentdir);%come back to the working directory
|
---|
| 1397 | mdetect=0;
|
---|
| 1398 | if isempty(maskfiles)
|
---|
| 1399 | msgbox_uvmat('ERROR','no mask file detected (format ..._xxmask_ii.png needed), use the menu bar Tools/Make mask')
|
---|
| 1400 | return
|
---|
| 1401 | end
|
---|
| 1402 | for ilist=1:length(maskfiles)
|
---|
| 1403 | maskname=maskfiles(ilist).name;% take the first mask file in the list
|
---|
| 1404 | [rr,ff,x1,x2,xa,xb,xext,Mask_NomType{ilist}]=name2display(maskname);
|
---|
| 1405 | if ~strcmp(Mask_NomType{ilist},Mask_NomType{1})
|
---|
| 1406 | msgbox_uvmat('ERROR',['inconsistent mask types ' Mask_NomType{1} Mask_NomType{ilist } ' coexist in the current image directory'])
|
---|
| 1407 | return
|
---|
| 1408 | end
|
---|
| 1409 | [Path2,Name,ext]=fileparts(maskname);
|
---|
| 1410 | Namedouble=double(Name);
|
---|
| 1411 | val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters
|
---|
| 1412 | ind_mask=findstr('mask',Name);
|
---|
| 1413 | i=ind_mask-1;
|
---|
| 1414 | while val(i)==0 & i>0
|
---|
| 1415 | i=i-1;
|
---|
| 1416 | end
|
---|
| 1417 | nbmask_str=str2num(Name(i+1:ind_mask-1));
|
---|
| 1418 | if ~isempty(nbmask_str)
|
---|
| 1419 | nbslice(ilist)=nbmask_str; % number of different masks (slices)
|
---|
| 1420 | end
|
---|
| 1421 | end
|
---|
| 1422 | if isequal(min(nbslice),max(nbslice))
|
---|
| 1423 | nbslice=nbslice(1);
|
---|
| 1424 | else
|
---|
| 1425 | msgbox_uvmat('ERROR','several inconsistent mask sets coexist in the current image directory')
|
---|
| 1426 | return
|
---|
| 1427 | end
|
---|
| 1428 | if ~isempty(nbslice) && Name(i)=='_'
|
---|
| 1429 | Mask.Base=[FileBase Name(i:ind_mask+3)];
|
---|
| 1430 | Mask.NbSlice=nbslice;
|
---|
[55] | 1431 | num_i1=mod(num_i1-1,nbslice)+1;
|
---|
[2] | 1432 | Mask.NomType=Mask_NomType{1};
|
---|
[55] | 1433 | [maskname,mdetect]=name_generator(Mask.Base,num_i1,num_j1,'.png',Mask.NomType);%
|
---|
| 1434 | mdetect=exist(maskname,'file');
|
---|
[2] | 1435 | if mdetect
|
---|
| 1436 | set(handles.nb_slice,'String',Name(i+1:ind_mask-1));
|
---|
| 1437 | set(handles.nb_slice,'BackgroundColor',[1 1 0])
|
---|
| 1438 | set(handles.mask_test,'UserData',Mask);
|
---|
| 1439 | set(handles.mask_test,'BackgroundColor',[1 1 0])
|
---|
| 1440 | if nbslice > 1
|
---|
| 1441 | set(handles.slices,'value',1)
|
---|
| 1442 | slices_Callback(hObject, eventdata, handles)
|
---|
| 1443 | end
|
---|
| 1444 | end
|
---|
| 1445 | end
|
---|
| 1446 | if mdetect==0
|
---|
| 1447 | msgbox_uvmat('ERROR','no mask file detected (format ..._xxmask_ii.png needed), use the menu bar Tools/Make mask')
|
---|
| 1448 | set(handles.mask_test,'Value',0)
|
---|
| 1449 | return
|
---|
| 1450 | end
|
---|
| 1451 | update_mask(handles,num_i1,num_j1);
|
---|
| 1452 | else
|
---|
| 1453 | MaskData=get(handles.mask_test,'UserData');
|
---|
| 1454 | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle)
|
---|
| 1455 | delete(MaskData.maskhandle)
|
---|
| 1456 | end
|
---|
| 1457 | set(handles.mask_test,'UserData',[])
|
---|
| 1458 | huvmat=get(handles.mask_test,'parent');
|
---|
| 1459 | UvData=get(huvmat,'UserData');
|
---|
| 1460 | if isfield(UvData,'MaskName')
|
---|
| 1461 | UvData=rmfield(UvData,'MaskName');
|
---|
| 1462 | set(huvmat,'UserData',UvData)
|
---|
| 1463 | end
|
---|
| 1464 | set(handles.mask_test,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 1465 | end
|
---|
| 1466 |
|
---|
| 1467 | %-------------------------------------------------------------------
|
---|
| 1468 | function update_mask(handles,num_i1,num_j1)
|
---|
| 1469 | %-------------------------------------------------------------------
|
---|
| 1470 |
|
---|
| 1471 | MaskData=get(handles.mask_test,'UserData');
|
---|
| 1472 | if isfield(MaskData,'maskhandle')&& ishandle(MaskData.maskhandle)
|
---|
| 1473 | uistack(MaskData.maskhandle,'top');
|
---|
| 1474 | end
|
---|
| 1475 | num_i1_mask=mod(num_i1-1,MaskData.NbSlice)+1;
|
---|
| 1476 | [MaskName,mdetect]=name_generator(MaskData.Base,num_i1_mask,num_j1,'.png',MaskData.NomType);
|
---|
| 1477 | huvmat=get(handles.mask_test,'parent');
|
---|
| 1478 | UvData=get(huvmat,'UserData');
|
---|
| 1479 |
|
---|
| 1480 | %update mask image if the mask is new
|
---|
| 1481 | if ~ (isfield(UvData,'MaskName') && isequal(UvData.MaskName,MaskName))
|
---|
| 1482 | UvData.MaskName=MaskName; %update the recorded name on UvData
|
---|
| 1483 | set(huvmat,'UserData',UvData);
|
---|
| 1484 | if mdetect==0
|
---|
| 1485 | if isfield(MaskData,'maskhandle')&& ishandle(MaskData.maskhandle)
|
---|
| 1486 | delete(MaskData.maskhandle)
|
---|
| 1487 | end
|
---|
| 1488 | else
|
---|
| 1489 | %read mask image
|
---|
| 1490 | Mask.AName='image';
|
---|
| 1491 | Mask.A=imread(MaskName);
|
---|
| 1492 | npxy=size(Mask.A);
|
---|
| 1493 | Mask.AX=[0.5 npxy(2)-0.5];
|
---|
| 1494 | Mask.AY=[npxy(1)-0.5 0.5 ];
|
---|
| 1495 | Mask.CoordType='px';
|
---|
| 1496 | if isequal(get(handles.slices,'Value'),1)
|
---|
| 1497 | NbSlice=str2num(get(handles.nb_slice,'String'));
|
---|
| 1498 | num_i1=str2num(get(handles.i1,'String'));
|
---|
| 1499 | Mask.ZIndex=mod(num_i1-1,NbSlice)+1;
|
---|
| 1500 | end
|
---|
| 1501 | %px to phys or other transform on field
|
---|
[39] | 1502 | menu_transform=get(handles.transform_fct,'String');
|
---|
| 1503 | choice_value=get(handles.transform_fct,'Value');
|
---|
| 1504 | transform_name=menu_transform{choice_value};%name of the transform fct given by the menu 'transform_fct'
|
---|
| 1505 | transform_list=get(handles.transform_fct,'UserData');
|
---|
[38] | 1506 | transform=transform_list{choice_value};
|
---|
| 1507 | if ~isequal(transform_name,'') && ~isequal(transform_name,'px')
|
---|
[2] | 1508 | if isfield(UvData,'XmlData') && isfield(UvData.XmlData,'GeometryCalib')%use geometry calib recorded from the ImaDoc xml file as first priority
|
---|
| 1509 | Calib=UvData.XmlData.GeometryCalib;
|
---|
[38] | 1510 | Mask=transform(Mask,UvData.XmlData);
|
---|
[2] | 1511 | end
|
---|
| 1512 | end
|
---|
| 1513 | flagmask=Mask.A < 200;
|
---|
| 1514 |
|
---|
| 1515 | %make brown color image
|
---|
| 1516 | imflag(:,:,1)=0.9*flagmask;
|
---|
| 1517 | imflag(:,:,2)=0.7*flagmask;
|
---|
| 1518 | imflag(:,:,3)=zeros(size(flagmask));
|
---|
| 1519 |
|
---|
| 1520 | %update mask image
|
---|
| 1521 | hmask=[]; %default
|
---|
| 1522 | if isfield(MaskData,'maskhandle')&& ishandle(MaskData.maskhandle)
|
---|
| 1523 | hmask=MaskData.maskhandle;
|
---|
| 1524 | end
|
---|
| 1525 | if ~isempty(hmask)
|
---|
| 1526 | set(hmask,'CData',imflag)
|
---|
| 1527 | set(hmask,'AlphaData',flagmask*0.6)
|
---|
| 1528 | set(hmask,'XData',Mask.AX);
|
---|
| 1529 | set(hmask,'YData',Mask.AY);
|
---|
| 1530 | % uistack(hmask,'top')
|
---|
| 1531 | else
|
---|
| 1532 | axes(handles.axes3)
|
---|
| 1533 | hold on
|
---|
| 1534 | MaskData.maskhandle=image(Mask.AX,Mask.AY,imflag,'Tag','mask','HitTest','off','AlphaData',0.6*flagmask);
|
---|
| 1535 | % set(MaskData.maskhandle,'AlphaData',0.6*flagmask)
|
---|
| 1536 | set(handles.mask_test,'UserData',MaskData)
|
---|
| 1537 | end
|
---|
| 1538 | end
|
---|
| 1539 | end
|
---|
| 1540 |
|
---|
| 1541 |
|
---|
| 1542 | %-------------------------------------------------------------------
|
---|
| 1543 | function MenuExportFigure_Callback(hObject, eventdata, handles)
|
---|
| 1544 | %-------------------------------------------------------------------
|
---|
| 1545 | huvmat=get(handles.MenuExport,'parent');
|
---|
| 1546 | UvData=get(huvmat,'UserData');
|
---|
| 1547 | hfig=figure;
|
---|
| 1548 | newaxes=copyobj(handles.axes3,hfig);
|
---|
| 1549 | map=colormap(handles.axes3);
|
---|
| 1550 | colormap(map);%transmit the current colormap to the zoom fig
|
---|
| 1551 | colorbar
|
---|
| 1552 |
|
---|
| 1553 | %-------------------------------------------------------------------
|
---|
| 1554 | %-------------------------------------------------------------------
|
---|
| 1555 | % III - MAIN REFRESH FUNCTIONS : 'FRAME PLOT'
|
---|
| 1556 | %-------------------------------------------------------------------
|
---|
| 1557 | %-------------------------------------------------------------------
|
---|
| 1558 |
|
---|
| 1559 | %Executes on button press in runplus: make one step forward and call
|
---|
| 1560 | %run0. The step forward is along the fields series 1 or 2 depending on
|
---|
| 1561 | %the scan_i and scan_j check box (exclusive each other)
|
---|
| 1562 | %-------------------------------------------------------------------
|
---|
| 1563 | function runplus_Callback(hObject, eventdata, handles)
|
---|
| 1564 | increment=str2num(get(handles.increment_scan,'String')); %get the field increment d
|
---|
| 1565 | runpm(hObject,eventdata,handles,increment)
|
---|
| 1566 |
|
---|
| 1567 | %-------------------------------------------------------------------
|
---|
| 1568 | %Executes on button press in runmin: make one step backward and call
|
---|
| 1569 | %run0. The step backward is along the fields series 1 or 2 depending on
|
---|
| 1570 | %the scan_i and scan_j check box (exclusive each other)
|
---|
| 1571 | %-------------------------------------------------------------------
|
---|
| 1572 | function runmin_Callback(hObject, eventdata, handles)
|
---|
| 1573 | increment=-str2num(get(handles.increment_scan,'String')); %get the field increment d
|
---|
| 1574 | runpm(hObject,eventdata,handles,increment)
|
---|
| 1575 |
|
---|
| 1576 | %-------------------------------------------------------------------
|
---|
| 1577 | %Executes on button press in runmin: make one step backward and call
|
---|
| 1578 | %run0. The step backward is along the fields series 1 or 2 depending on
|
---|
| 1579 | %the scan_i and scan_j check box (exclusive each other)
|
---|
| 1580 | %-------------------------------------------------------------------
|
---|
| 1581 | function RunMovie_Callback(hObject, eventdata, handles)
|
---|
| 1582 | %------------------------------------------------------------------
|
---|
| 1583 | set(handles.RunMovie,'BackgroundColor',[1 1 0])%paint the command button in yellow
|
---|
| 1584 | drawnow
|
---|
| 1585 | increment=str2num(get(handles.increment_scan,'String')); %get the field increment d
|
---|
| 1586 | set(handles.STOP,'Visible','on')
|
---|
| 1587 | set(handles.speed,'Visible','on')
|
---|
| 1588 | set(handles.speed_txt,'Visible','on')
|
---|
| 1589 | set(handles.RunMovie,'BusyAction','queue')
|
---|
| 1590 | testavi=0;
|
---|
[57] | 1591 | UvData=get(handles.uvmat,'UserData');
|
---|
[2] | 1592 |
|
---|
| 1593 | while get(handles.speed,'Value')~=0 & isequal(get(handles.RunMovie,'BusyAction'),'queue') % enable STOP command
|
---|
| 1594 | runpm(hObject,eventdata,handles,increment)
|
---|
| 1595 | pause(1.02-get(handles.speed,'Value'))% wait for next image
|
---|
| 1596 | end
|
---|
| 1597 | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj),
|
---|
| 1598 | UvData.aviobj=close(UvData.aviobj);
|
---|
[57] | 1599 | set(handles.uvmat,'UserData',UvData);
|
---|
[2] | 1600 | end
|
---|
| 1601 | set(handles.RunMovie,'BackgroundColor',[1 0 0])%paint the command buttonback to red
|
---|
| 1602 |
|
---|
| 1603 | %-------------------------------------------------------------------
|
---|
| 1604 | function STOP_Callback(hObject, eventdata, handles)
|
---|
| 1605 | %-------------------------------------------------------------------
|
---|
[57] | 1606 | set(handles.movie_pair,'BusyAction','Cancel')
|
---|
| 1607 | set(handles.movie_pair,'value',0)
|
---|
[2] | 1608 | set(handles.RunMovie,'BusyAction','Cancel')
|
---|
| 1609 | set(handles.MenuExportMovie,'BusyAction','Cancel')
|
---|
| 1610 |
|
---|
| 1611 |
|
---|
| 1612 | %------------------------------------------------------------------
|
---|
| 1613 | function runpm(hObject,eventdata,handles,increment)
|
---|
| 1614 | %------------------------------------------------------------------
|
---|
[57] | 1615 | %check for mùovie pair status
|
---|
| 1616 | movie_status=get(handles.movie_pair,'Value');
|
---|
| 1617 | if isequal(movie_status,1)
|
---|
[59] | 1618 | STOP_Callback(hObject, eventdata, handles)%interrupt movie pair if active
|
---|
[57] | 1619 | end
|
---|
[2] | 1620 | %read the data on the current input rootfile(s)
|
---|
| 1621 |
|
---|
| 1622 | [FileName,RootPath,filebase,FileIndices,FileExt,subdir]=read_file_boxes(handles);
|
---|
| 1623 | NomType=get(handles.FileIndex,'UserData');
|
---|
| 1624 |
|
---|
| 1625 | num1=stra2num(get(handles.i1,'String'));
|
---|
| 1626 | num2=stra2num(get(handles.i2,'String'));
|
---|
| 1627 | num_a=stra2num(get(handles.j1,'String'));
|
---|
| 1628 | num_b=stra2num(get(handles.j2,'String'));
|
---|
| 1629 |
|
---|
| 1630 | sub_value= get(handles.SubField,'Value');
|
---|
[59] | 1631 | if sub_value % a second input file has been entered
|
---|
[2] | 1632 | [FileName_1,RootPath_1,filebase_1,FileIndices_1,FileExt_1,SubDir_1]=read_file_boxes_1(handles);
|
---|
[59] | 1633 | [pp,ff,str1,str2,str_a,str_b]=name2display(FileIndices_1);
|
---|
| 1634 | num1_1=stra2num(str1);%current set of indices for the second field (may be set different than the main indices)
|
---|
| 1635 | num2_1=stra2num(str2);
|
---|
| 1636 | num_a_1=stra2num(str_a);
|
---|
| 1637 | num_b_1=stra2num(str_b);
|
---|
| 1638 | NomType_1=get(handles.FileIndex_1,'UserData');
|
---|
| 1639 | else
|
---|
| 1640 | filename_1=[];
|
---|
[2] | 1641 | end
|
---|
| 1642 |
|
---|
| 1643 | comp_input=get(handles.fix_pair,'Value');
|
---|
[59] | 1644 | if isequal(NomType,'_i1-i2')||isequal(NomType,'_i1-i2_j')
|
---|
| 1645 | comp_input=1; %impose a fixed pair
|
---|
[2] | 1646 | set(handles.fix_pair,'Value',1)
|
---|
| 1647 | end
|
---|
| 1648 |
|
---|
| 1649 | %case of scanning along the first direction (rootfile numbers)
|
---|
[59] | 1650 | if get(handles.scan_i,'Value')==1% case of scanning along index i
|
---|
[2] | 1651 | num1=num1+increment;
|
---|
| 1652 | num2=num2+increment;
|
---|
[59] | 1653 | [filename,num1,num_a,num2,num_b]=name_generator(filebase,num1,num_a,FileExt,NomType,comp_input,num2,num_b,subdir);
|
---|
| 1654 | if sub_value% set the second field name and indices
|
---|
| 1655 | num1_1=num1_1+increment;
|
---|
| 1656 | num2_1=num2_1+increment;
|
---|
| 1657 | filename_1=name_generator(filebase_1,num1_1,num_a_1,FileExt_1,NomType_1,1,num2_1,num_b_1,SubDir_1);
|
---|
| 1658 | end
|
---|
| 1659 | else % case of scanning along index j (burst numbers)
|
---|
[2] | 1660 | num_a=num_a+increment;
|
---|
| 1661 | num_b=num_b+increment;
|
---|
[59] | 1662 | if sub_value
|
---|
| 1663 | num_a_1=num_a_1+increment;
|
---|
| 1664 | num_b_1=num_b_1+increment;
|
---|
| 1665 | filename_1=name_generator(filebase_1,num1_1,num_a_1,FileExt_1,NomType_1,1,num2_1,num_b_1,SubDir_1);
|
---|
| 1666 | % else % redefine the j index if it exceeds its upper bound (only in the absence of a second field)
|
---|
| 1667 | % lastfield_cell=get(handles.last_j,'String'); % get the last field number
|
---|
| 1668 | % lastfield=str2double(lastfield_cell{1});
|
---|
| 1669 | % if num_a>lastfield && ~isnan(lastfield)
|
---|
| 1670 | % num_a=mod(num_a,lastfield);
|
---|
| 1671 | % num_b=mod(num_b,lastfield)
|
---|
| 1672 | % end
|
---|
[2] | 1673 | end
|
---|
[59] | 1674 | filename=name_generator(filebase,num1,num_a,FileExt,NomType,comp_input,num2,num_b,subdir);
|
---|
[2] | 1675 | end
|
---|
| 1676 |
|
---|
[59] | 1677 | % refresh plots
|
---|
| 1678 | errormsg=refresh_field(handles,filename,filename_1,num1,num2,num_a,num_b);
|
---|
[2] | 1679 |
|
---|
[59] | 1680 | if isempty(errormsg) %update the index counters
|
---|
| 1681 | set(handles.i1,'String',num2stra(num1,NomType,1));
|
---|
| 1682 | if isequal(num2,num1)
|
---|
| 1683 | set(handles.i2,'String','');
|
---|
| 1684 | else
|
---|
| 1685 | set(handles.i2,'String',num2stra(num2,NomType,1));
|
---|
| 1686 | end
|
---|
| 1687 | set(handles.j1,'String',num2stra(num_a,NomType,2));
|
---|
| 1688 | if isequal(num_b,num_a)
|
---|
| 1689 | set(handles.j2,'String','');
|
---|
| 1690 | else
|
---|
| 1691 | set(handles.j2,'String',num2stra(num_b,NomType,2));
|
---|
| 1692 | end
|
---|
| 1693 | [indices]=name_generator('',num1,num_a,'',NomType,1,num2,num_b,'');
|
---|
| 1694 | set(handles.FileIndex,'String',indices);
|
---|
| 1695 | if sub_value
|
---|
| 1696 | indices_1=name_generator('',num1_1,num_a_1,'',NomType_1,1,num2_1,num_b_1,'');
|
---|
| 1697 | set(handles.FileIndex_1,'String',indices_1);
|
---|
| 1698 | end
|
---|
| 1699 | if isequal(movie_status,1)
|
---|
| 1700 | set(handles.movie_pair,'Value',1)
|
---|
| 1701 | movie_pair_Callback(hObject, eventdata, handles); %reactivate moviepair if it was activated
|
---|
| 1702 | end
|
---|
[57] | 1703 | else
|
---|
[59] | 1704 | msgbox_uvmat('ERROR',errormsg);
|
---|
[57] | 1705 | end
|
---|
[2] | 1706 |
|
---|
| 1707 |
|
---|
[59] | 1708 |
|
---|
[2] | 1709 | %-------------------------------------------------------
|
---|
[57] | 1710 | % --- Executes on button press in movie_pair: create an alternating movie with two view
|
---|
[2] | 1711 | %-------------------------------------------------------
|
---|
| 1712 | function movie_pair_Callback(hObject, eventdata, handles)
|
---|
[57] | 1713 | status=get(handles.movie_pair,'value');
|
---|
| 1714 | if isequal(status,0)
|
---|
[59] | 1715 | set(handles.movie_pair,'BusyAction','Cancel')%stop movie pair if button is 'off'
|
---|
| 1716 | set(handles.i2,'String','')
|
---|
| 1717 | set(handles.j2,'String','')
|
---|
[57] | 1718 | return
|
---|
| 1719 | else
|
---|
| 1720 | set(handles.movie_pair,'BusyAction','queue')
|
---|
| 1721 | end
|
---|
[2] | 1722 | %initialisation
|
---|
| 1723 | set(handles.movie_pair,'BackgroundColor',[1 1 0])%paint the command button in yellow
|
---|
| 1724 | drawnow
|
---|
| 1725 | list_fields=get(handles.Fields,'String');% list menu fields
|
---|
| 1726 | index_fields=get(handles.Fields,'Value');% selected string index
|
---|
| 1727 | FieldName=list_fields{index_fields}; % selected field
|
---|
| 1728 | if isequal(FieldName,'image')
|
---|
[59] | 1729 | % run0_Callback(hObject, eventdata, handles)%display the first image
|
---|
[45] | 1730 | UvData=get(handles.uvmat,'UserData');
|
---|
[2] | 1731 | else
|
---|
[38] | 1732 | msgbox_uvmat('ERROR','an image or movie must be first introduced as input')
|
---|
[2] | 1733 | return
|
---|
| 1734 | end
|
---|
| 1735 | [ff,rr,filebase,xx,Ext,SubDir]=read_file_boxes(handles);
|
---|
| 1736 | NomType=get(handles.FileIndex,'UserData');
|
---|
[57] | 1737 | num_i1=stra2num(get(handles.i1,'String'));
|
---|
| 1738 | num_j1=stra2num(get(handles.j1,'String'));
|
---|
| 1739 | num_i2=stra2num(get(handles.i2,'String'));
|
---|
| 1740 | num_j2=stra2num(get(handles.j2,'String'));
|
---|
| 1741 | if isempty(num_j2)
|
---|
| 1742 | if isempty(num_i2)
|
---|
| 1743 | msgbox_uvmat('ERROR', 'a second image index i2 or j2 is needed to show the pair as a movie')
|
---|
[2] | 1744 | return
|
---|
[57] | 1745 | else
|
---|
| 1746 | num_j2=num_j1;%repeat the index i1 by default
|
---|
[2] | 1747 | end
|
---|
[57] | 1748 | end
|
---|
| 1749 | if isempty(num_i2)
|
---|
| 1750 | num_i2=num_i1;%repeat the index i1 by default
|
---|
| 1751 | end
|
---|
| 1752 | imaname_1=name_generator(filebase,num_i2,num_j2,Ext,NomType);
|
---|
| 1753 | if ~exist(imaname_1,'file')
|
---|
| 1754 | msgbox_uvmat('ERROR',['second input open (-) ' imaname_1 ' not found']);
|
---|
| 1755 | return
|
---|
| 1756 | end
|
---|
| 1757 | % set(handles.i2,'String',''); % indicates that the second index i2 is not used
|
---|
| 1758 | % set(handles.j2,'String',''); % indicates that the second index i2 is not used
|
---|
[2] | 1759 |
|
---|
| 1760 | %read the second image
|
---|
| 1761 | Field.AName='image';
|
---|
| 1762 | Field.AX=UvData.Field.AX;
|
---|
| 1763 | Field.AY=UvData.Field.AY;
|
---|
[57] | 1764 | % z index
|
---|
| 1765 | nbslice=str2double(get(handles.nb_slice,'String'));
|
---|
| 1766 | if ~isempty(nbslice)
|
---|
| 1767 | Field.ZIndex=mod(num_i2-1,nbslice)+1;
|
---|
| 1768 | end
|
---|
[2] | 1769 | Field.CoordType='px';
|
---|
[45] | 1770 | %determine the input file type
|
---|
| 1771 | if isfield(UvData,'MovieObject')
|
---|
| 1772 | FileType='movie';
|
---|
| 1773 | elseif isequal(lower(Ext),'.avi')
|
---|
| 1774 | FileType='avi';
|
---|
| 1775 | elseif isequal(lower(Ext),'.vol')
|
---|
| 1776 | FileType='vol';
|
---|
| 1777 | else
|
---|
| 1778 | form=imformats(Ext([2:end]));
|
---|
| 1779 | if ~isempty(form)% if the extension corresponds to an image format recognized by Matlab
|
---|
| 1780 | if isequal(NomType,'*');
|
---|
| 1781 | FileType='multimage';
|
---|
| 1782 | else
|
---|
| 1783 | FileType='image';
|
---|
| 1784 | end
|
---|
| 1785 | end
|
---|
| 1786 | end
|
---|
| 1787 | switch FileType
|
---|
| 1788 | case 'movie'
|
---|
| 1789 | Field.A=read(UvData.MovieObject,num_i2);
|
---|
| 1790 | case 'avi'
|
---|
| 1791 | mov=aviread(imaname_1,num_i2);
|
---|
| 1792 | Field.A=frame2im(mov(1));
|
---|
| 1793 | case 'vol'
|
---|
| 1794 | Field.A=imread(imaname_1);
|
---|
| 1795 | case 'multimage'
|
---|
| 1796 | Field.A=imread(imaname_1,num_i2);
|
---|
| 1797 | case 'image'
|
---|
| 1798 | Field.A=imread(imaname_1);
|
---|
| 1799 | end
|
---|
[2] | 1800 |
|
---|
| 1801 | %px to phys or other transform on field
|
---|
[39] | 1802 | menu_transform=get(handles.transform_fct,'String');
|
---|
| 1803 | choice_value=get(handles.transform_fct,'Value');
|
---|
| 1804 | transform_name=menu_transform{choice_value};%name of the transform fct given by the menu 'transform_fct'
|
---|
| 1805 | transform_list=get(handles.transform_fct,'UserData');
|
---|
[38] | 1806 | transform=transform_list{choice_value};
|
---|
| 1807 | if ~isequal(transform_name,'') && ~isequal(transform_name,'px')
|
---|
[2] | 1808 | if isfield(UvData,'XmlData') && isfield(UvData.XmlData,'GeometryCalib')%use geometry calib recorded from the ImaDoc xml file as first priority
|
---|
[38] | 1809 | Field=transform(Field,UvData.XmlData);
|
---|
[2] | 1810 | end
|
---|
| 1811 | end
|
---|
| 1812 |
|
---|
| 1813 | % make movie until movie speed is set to 0 or STOP is activated
|
---|
| 1814 | hima=findobj(handles.axes3,'Tag','ima');% %handles.axes3 =main plotting window (A GENERALISER)
|
---|
| 1815 | set(handles.STOP,'Visible','on')
|
---|
| 1816 | set(handles.speed,'Visible','on')
|
---|
| 1817 | set(handles.speed_txt,'Visible','on')
|
---|
[57] | 1818 | while get(handles.speed,'Value')~=0 && isequal(get(handles.movie_pair,'BusyAction'),'queue')%isequal(get(handles.run0,'BusyAction'),'queue'); % enable STOP command
|
---|
[2] | 1819 | % read and plot the series of images in non erase mode
|
---|
| 1820 | set(hima,'CData',Field.A);
|
---|
| 1821 | pause(1.02-get(handles.speed,'Value'));% wait for next image
|
---|
| 1822 | set(hima,'CData',UvData.Field.A);
|
---|
| 1823 | pause(1.02-get(handles.speed,'Value'));% wait for next image
|
---|
| 1824 | end
|
---|
| 1825 | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red
|
---|
| 1826 |
|
---|
[59] | 1827 | %------------------------------------------------------------------------
|
---|
[2] | 1828 | % --- Executes on button press in run0.
|
---|
| 1829 | function run0_Callback(hObject, eventdata, handles)
|
---|
[59] | 1830 | %------------------------------------------------------------------------
|
---|
| 1831 | filename=read_file_boxes(handles);
|
---|
[2] | 1832 |
|
---|
[59] | 1833 | filename_1=[];%default
|
---|
| 1834 | if get(handles.SubField,'Value')
|
---|
| 1835 | filename_1=read_file_boxes_1(handles);
|
---|
| 1836 | end
|
---|
| 1837 | num_i1=stra2num(get(handles.i1,'String'));
|
---|
| 1838 | num_i2=stra2num(get(handles.i2,'String'));
|
---|
| 1839 | num_j1=stra2num(get(handles.j1,'String'));
|
---|
| 1840 | num_j2=stra2num(get(handles.j2,'String'));
|
---|
| 1841 | errormsg=refresh_field(handles,filename,filename_1,num_i1,num_i2,num_j1,num_j2);
|
---|
| 1842 | if ~isempty(errormsg)
|
---|
| 1843 | msgbox_uvmat('ERROR',errormsg);
|
---|
| 1844 | end
|
---|
| 1845 |
|
---|
| 1846 | %------------------------------------------------------------------------
|
---|
| 1847 | % --- read the input files and refresh all the plots, including projection.
|
---|
| 1848 | % OUTPUT:
|
---|
| 1849 | % errormsg: error message char string =[] by default
|
---|
| 1850 | % INPUT:
|
---|
| 1851 | % filename: first input file (=[] in the absence of input file)
|
---|
| 1852 | % filename_1: second input file (=[] in the asbsenc of secodn input file)
|
---|
| 1853 | % num_i1,num_i2,num_j1,num_j2; frame indices
|
---|
| 1854 | % Field: structure describing an optional input field (then replace the input file)
|
---|
| 1855 |
|
---|
| 1856 | function errormsg=refresh_field(handles,filename,filename_1,num_i1,num_i2,num_j1,num_j2,Field)
|
---|
| 1857 | %------------------------------------------------------------------------
|
---|
[2] | 1858 | %initialisation
|
---|
| 1859 | set(handles.run0,'BackgroundColor',[1 1 0])%paint the command button in yellow
|
---|
| 1860 | drawnow
|
---|
[59] | 1861 | errormsg=[]; % default error message
|
---|
[2] | 1862 | abstime=[];
|
---|
| 1863 | abstime_1=[];
|
---|
| 1864 | dt=[];
|
---|
[59] | 1865 | if ~exist('Field','var')
|
---|
| 1866 | Field={};
|
---|
| 1867 | end
|
---|
[45] | 1868 | UvData=get(handles.uvmat,'UserData');
|
---|
[59] | 1869 | % if isfield(UvData,'Txt')
|
---|
| 1870 | % UvData=rmfield(UvData,'Txt');%erase previous error message
|
---|
| 1871 | % end
|
---|
[2] | 1872 | if ishandle(handles.UVMAT_title) %remove title panel on uvmat
|
---|
| 1873 | delete(handles.UVMAT_title)
|
---|
| 1874 | end
|
---|
| 1875 |
|
---|
| 1876 | % determine the main input file information for action
|
---|
[45] | 1877 | FileType=[];%default
|
---|
[59] | 1878 | if ~isempty(filename)
|
---|
| 1879 | % [filename,RootPath,filebase,xx,Ext]=read_file_boxes(handles);
|
---|
[2] | 1880 | if ~exist(filename,'file')
|
---|
[59] | 1881 | errormsg=['input file ' filename ' does not exist'];
|
---|
[2] | 1882 | return
|
---|
| 1883 | end
|
---|
[59] | 1884 | Ext=get(handles.FileExt,'String');
|
---|
[2] | 1885 | NomType=get(handles.FileIndex,'UserData');
|
---|
| 1886 | %update the z position index
|
---|
[45] | 1887 | nbslice=str2double(get(handles.nb_slice,'String'));
|
---|
[57] | 1888 | if ~isnan(nbslice)
|
---|
[2] | 1889 | z_index=mod(num_i1-1,nbslice)+1;
|
---|
| 1890 | set(handles.z_index,'String',num2str(z_index))
|
---|
| 1891 | % refresh menu for save_mask if relevant
|
---|
| 1892 | masknumber=get(handles.masklevel,'String');
|
---|
| 1893 | if length(masknumber)>=z_index
|
---|
| 1894 | set(handles.masklevel,'Value',z_index)
|
---|
| 1895 | end
|
---|
| 1896 | end
|
---|
[45] | 1897 | % determine the input file type
|
---|
| 1898 | if isequal(Ext,'.nc')||isequal(Ext,'.cdf')
|
---|
| 1899 | FileType='netcdf';
|
---|
| 1900 | elseif isfield(UvData,'MovieObject')
|
---|
| 1901 | FileType='movie';
|
---|
| 1902 | FieldName='image';
|
---|
| 1903 | elseif isequal(lower(Ext),'.avi')
|
---|
| 1904 | FileType='avi';
|
---|
| 1905 | FieldName='image';
|
---|
| 1906 | elseif isequal(lower(Ext),'.vol')
|
---|
| 1907 | FileType='vol';
|
---|
| 1908 | FieldName='image';
|
---|
[2] | 1909 | else
|
---|
| 1910 | form=imformats(Ext([2:end]));
|
---|
| 1911 | if ~isempty(form)% if the extension corresponds to an image format recognized by Matlab
|
---|
[45] | 1912 | if isequal(NomType,'*');
|
---|
| 1913 | FileType='multimage';
|
---|
| 1914 | else
|
---|
| 1915 | FileType='image';
|
---|
| 1916 | end
|
---|
[2] | 1917 | FieldName='image';
|
---|
| 1918 | end
|
---|
| 1919 | end
|
---|
| 1920 | else
|
---|
[45] | 1921 | FileType='netcdf';
|
---|
[2] | 1922 | FieldName='get_field...';
|
---|
| 1923 | end
|
---|
| 1924 | VelType=[];%default
|
---|
[45] | 1925 | if isequal(FileType,'netcdf')
|
---|
[2] | 1926 | list_fields=get(handles.Fields,'String');% list menu fields
|
---|
| 1927 | index_fields=get(handles.Fields,'Value');% selected string index
|
---|
| 1928 | FieldName= list_fields{index_fields}; % selected field
|
---|
[59] | 1929 | if ~isequal(FieldName,'get_field...')% read the field names on the interface get_field...
|
---|
[2] | 1930 | VelType=setfield(handles);
|
---|
| 1931 | end
|
---|
| 1932 | end
|
---|
| 1933 |
|
---|
| 1934 | % choose a second field if Subfield option is 'on'
|
---|
| 1935 | FieldName_1=[];
|
---|
| 1936 | scal_color=[];
|
---|
| 1937 | VelType_1=setfield_1(handles);
|
---|
| 1938 | sub_value=get(handles.SubField,'Value');
|
---|
[45] | 1939 | FileType_1='none';%default
|
---|
[59] | 1940 | %if sub_value==1
|
---|
| 1941 | if ~isempty(filename_1)
|
---|
| 1942 | % test for a constant second field (comparison with a fixed field)
|
---|
[2] | 1943 | NomType_1=get(handles.FileIndex_1,'UserData');
|
---|
[45] | 1944 | Ext_1=get(handles.FileExt_1,'String');
|
---|
| 1945 | % determine the input file type
|
---|
| 1946 | if isequal(Ext_1,'.nc')||isequal(Ext_1,'.cdf')
|
---|
| 1947 | FileType_1='netcdf';
|
---|
| 1948 | elseif isfield(UvData,'MovieObject_1')
|
---|
| 1949 | FileType_1='movie';
|
---|
| 1950 | FieldName_1='image';
|
---|
| 1951 | elseif isequal(lower(Ext_1),'.avi')
|
---|
| 1952 | FileType='avi';
|
---|
| 1953 | FieldName_1='image';
|
---|
| 1954 | elseif isequal(lower(Ext_1),'.vol')
|
---|
| 1955 | FileType_1='vol';
|
---|
| 1956 | FieldName_1='image';
|
---|
| 1957 | else
|
---|
| 1958 | form=imformats(Ext([2:end]));
|
---|
| 1959 | if ~isempty(form)% if the extension corresponds to an image format recognized by Matlab
|
---|
| 1960 | if isequal(NomType_1,'*');
|
---|
| 1961 | FileType_1='multimage';
|
---|
| 1962 | else
|
---|
| 1963 | FileType_1='image';
|
---|
| 1964 | end
|
---|
| 1965 | FieldName_1='image';
|
---|
| 1966 | end
|
---|
| 1967 | end
|
---|
| 1968 | if ~isequal(FieldName_1,'image')
|
---|
| 1969 | list_fields=get(handles.Fields_1,'String');% list menu fields
|
---|
| 1970 | index_fields=get(handles.Fields_1,'Value');% selected string index
|
---|
| 1971 | FieldName_1= list_fields{index_fields}; % selected field
|
---|
| 1972 | if isequal(VelType_1,'*')% free veltype choice
|
---|
[2] | 1973 | VelType_1=[];
|
---|
[45] | 1974 | elseif isequal(VelType_1,'"')% veltype the same as for the first field
|
---|
| 1975 | if isempty(VelType)
|
---|
| 1976 | VelType_1=[];
|
---|
| 1977 | else
|
---|
| 1978 | VelType_1=VelType;
|
---|
| 1979 | end
|
---|
[2] | 1980 | end
|
---|
| 1981 | end
|
---|
[59] | 1982 | test_keepdata_1=0;% test for keeping the previous stored data if the input files are unchanged
|
---|
| 1983 | if ~isequal(NomType_1,'*')%in case of a series of files (not avi movie)
|
---|
[45] | 1984 | if isfield(UvData,'filename_1')&& isfield(UvData,'VelType_1') && isfield(UvData,'FieldName_1')
|
---|
| 1985 | test_keepdata_1= isequal(filename_1,UvData.filename_1)&&...
|
---|
| 1986 | isequal(VelType_1,UvData.filename_1) && isequal(FieldName_1,UvData.FieldName_1);
|
---|
[2] | 1987 | end
|
---|
| 1988 | end
|
---|
[59] | 1989 | if test_keepdata_1
|
---|
| 1990 | Field{2}=UvData.Field_1;
|
---|
| 1991 | elseif ~exist(filename_1,'file')
|
---|
| 1992 | errormsg=['second file ' filename_1 ' does not exist'];
|
---|
| 1993 | return
|
---|
| 1994 | end
|
---|
[2] | 1995 | end
|
---|
| 1996 |
|
---|
| 1997 | %read the input field(s)
|
---|
| 1998 | %read images
|
---|
[45] | 1999 | if ~isempty(filename) && isequal(FieldName,'image')
|
---|
| 2000 | switch FileType
|
---|
| 2001 | case 'movie'
|
---|
| 2002 | A=read(UvData.MovieObject,num_i1);
|
---|
| 2003 | case 'avi'
|
---|
| 2004 | mov=aviread(filename,num_i1);
|
---|
| 2005 | A=frame2im(mov(1));
|
---|
| 2006 | case 'vol'
|
---|
| 2007 | A=imread(filename);
|
---|
| 2008 | case 'multimage'
|
---|
| 2009 | A=imread(filename,num_i1);
|
---|
| 2010 | case 'image'
|
---|
| 2011 | A=imread(filename);
|
---|
[2] | 2012 | end
|
---|
| 2013 | npxy=size(A);
|
---|
| 2014 | set(handles.npx,'String',num2str(npxy(2)));% display image size on the interface
|
---|
| 2015 | set(handles.npy,'String',num2str(npxy(1)));
|
---|
| 2016 | Rangx=[0.5 npxy(2)-0.5]; % coordinates of the first and last pixel centers
|
---|
| 2017 | Rangy=[npxy(1)-0.5 0.5]; %
|
---|
| 2018 | Field{1}.AName='image';
|
---|
| 2019 | Field{1}.ListVarName={'AY','AX','A'}; %
|
---|
| 2020 | if size(A,3)==3;%color
|
---|
| 2021 | Field{1}.VarDimName={'AY','AX',{'AY','AX','rgb'}}; %
|
---|
| 2022 | else
|
---|
| 2023 | Field{1}.VarDimName={'AY','AX',{'AY','AX'}}; %
|
---|
| 2024 | end
|
---|
| 2025 | Field{1}.AY=Rangy;
|
---|
| 2026 | Field{1}.AX=Rangx;
|
---|
| 2027 | Field{1}.A=A;
|
---|
| 2028 | Field{1}.CoordType='px'; %used for mouse_motion
|
---|
| 2029 | Field{1}.CoordUnit='pixel'; %used for mouse_motion
|
---|
| 2030 | end
|
---|
[56] | 2031 |
|
---|
| 2032 | %read a second image
|
---|
[59] | 2033 | if ~isempty(filename_1) && ~test_keepdata_1 && isequal(FieldName_1,'image')
|
---|
[45] | 2034 | switch FileType_1
|
---|
| 2035 | case 'movie'
|
---|
| 2036 | A=read(UvData.MovieObject_1,num_i1);
|
---|
| 2037 | case 'avi'
|
---|
| 2038 | mov=aviread(filename,num_i1);
|
---|
| 2039 | A=frame2im(mov(1));
|
---|
| 2040 | case 'vol'
|
---|
| 2041 | A=imread(filename);
|
---|
| 2042 | case 'multimage'
|
---|
| 2043 | A=imread(filename,num_i1);
|
---|
| 2044 | case 'image'
|
---|
| 2045 | A=imread(filename);
|
---|
| 2046 | end
|
---|
[2] | 2047 | npxy=size(A);
|
---|
| 2048 | set(handles.npx,'String',num2str(npxy(2)));% display image size on the interface
|
---|
| 2049 | set(handles.npy,'String',num2str(npxy(1)));
|
---|
| 2050 | Rangx=[0.5 npxy(2)-0.5]; % coordinates of the first and last pixel centers
|
---|
| 2051 | Rangy=[npxy(1)-0.5 0.5]; %
|
---|
| 2052 | Field{2}.AName='image';
|
---|
| 2053 | Field{2}.ListVarName={'AY','AX','A'}; %
|
---|
| 2054 | if size(A,3)==3;%color
|
---|
| 2055 | Field{2}.VarDimName={'AY','AX',{'AY','AX','rgb'}}; %
|
---|
| 2056 | else
|
---|
| 2057 | Field{2}.VarDimName={'AY','AX',{'AY','AX'}}; %
|
---|
| 2058 | end
|
---|
| 2059 | Field{2}.AY=Rangy;
|
---|
| 2060 | Field{2}.AX=Rangx;
|
---|
| 2061 | Field{2}.A=A;
|
---|
| 2062 | Field{2}.CoordType='px'; %used for mouse_motion
|
---|
| 2063 | Field{2}.CoordUnit='px'; %used for move_mou
|
---|
| 2064 | end
|
---|
| 2065 |
|
---|
| 2066 | %read ncfile(s)
|
---|
| 2067 | CivStage_1=0;%default
|
---|
| 2068 | VelType_out_1=[];
|
---|
| 2069 | InputField={FieldName};
|
---|
| 2070 | InputField_1={FieldName_1};
|
---|
[59] | 2071 | if (~isempty(filename)&& isequal(FileType,'netcdf')) || (~isempty(filename_1)&& isequal(FileType_1,'netcdf')) ;
|
---|
[2] | 2072 | %read the velocity field(s) from netcdf rootfile(s)
|
---|
| 2073 | list_code=get(handles.col_vec,'String');% list menu fields
|
---|
| 2074 | index_code=get(handles.col_vec,'Value');% selected string index
|
---|
| 2075 | scal_color= list_code{index_code(1)}; % selected field
|
---|
| 2076 | if isequal(FieldName,'velocity')&& ~isequal(scal_color,'black') && ~isequal(scal_color,'white')
|
---|
| 2077 | InputField=[InputField scal_color];
|
---|
| 2078 | end
|
---|
| 2079 | if isequal(FieldName_1,'velocity') && ~isequal(scal_color,'black') && ~isequal(scal_color,'white')
|
---|
| 2080 | InputField_1=[InputField_1 scal_color];
|
---|
| 2081 | end
|
---|
[45] | 2082 | if isequal(FileType,'netcdf') %read the first nc field
|
---|
[2] | 2083 | if isequal(FieldName,'get_field...')% read the field names on the interface get_field.
|
---|
[59] | 2084 | %VelType=get(handles.Fields,'UserData');
|
---|
[2] | 2085 | hget_field=findobj(allchild(0),'Name','get_field');%find the get_field... GUI
|
---|
| 2086 | if isempty(hget_field)
|
---|
| 2087 | hget_field= get_field(filename);%open the get_field GUI
|
---|
| 2088 | end
|
---|
| 2089 | hhget_field=guidata(hget_field);
|
---|
| 2090 | set(hhget_field.inputfile,'String',filename)% update the list of input fields in get_field
|
---|
| 2091 | set(hhget_field.ACTION,'Value',1)% PLOT option selected
|
---|
| 2092 | set(hhget_field.list_fig,'Value',2)% plotting axes =uvmat selected
|
---|
| 2093 | [Field{1},errormsg]=read_get_field(hget_field); %read the names of the variables to plot in the get_field GUI
|
---|
| 2094 | if ~isempty(errormsg)
|
---|
[59] | 2095 | errormsg=['error in uvmat/run0_Callback/read_get_field: ' errormsg];
|
---|
[2] | 2096 | return
|
---|
| 2097 | end
|
---|
| 2098 | CivStage=0;
|
---|
| 2099 | VelType_out=[];
|
---|
| 2100 | else
|
---|
| 2101 | [Field{1},VelType_out]=read_civxdata(filename,InputField,VelType);
|
---|
| 2102 | if isfield(Field{1},'Txt')
|
---|
[59] | 2103 | errormsg=Field{1}.Txt;
|
---|
[2] | 2104 | return
|
---|
| 2105 | end
|
---|
| 2106 | CivStage=Field{1}.CivStage;
|
---|
| 2107 | UvData.NbDim=Field{1}.nb_dim;
|
---|
| 2108 | end
|
---|
| 2109 | end
|
---|
[59] | 2110 | if ~isempty(filename_1) && ~test_keepdata_1 && isequal(FileType_1,'netcdf') %read the second file
|
---|
[2] | 2111 | if isequal(FieldName_1,'get_field...')% read the field names on the interface get_field.
|
---|
| 2112 | hget_field=findobj(allchild(0),'Name','get_field_1');%find the get_field... GUI
|
---|
| 2113 | if isempty(hget_field)
|
---|
| 2114 | hget_field= get_field(filename_1);%open the get_field GUI
|
---|
| 2115 | set(hget_field,'name','get_field_1')
|
---|
| 2116 | % enable_transform(handles,'off')% no field transform (possible transform in the GUI get_field)
|
---|
| 2117 | end
|
---|
| 2118 | hhget_field=guidata(hget_field);%handles of GUI elements in get_field
|
---|
| 2119 | SubField=get_field('read_var_names',hObject,eventdata,hhget_field); %read the names of the variables to plot in the get_field GUI
|
---|
| 2120 | [Field{2},var_detect]=nc2struct(filename_1,SubField.ListVarName); %read the corresponding input data
|
---|
| 2121 | Field{2}.VarAttribute=SubField.VarAttribute;
|
---|
| 2122 | %update the display on get_field
|
---|
| 2123 | set(hhget_field.inputfile,'String',filename_1)
|
---|
| 2124 | set(hhget_field.variables,'Value',1)
|
---|
| 2125 | Tabchar={''};%default
|
---|
| 2126 | Tabcell=[];
|
---|
| 2127 | if isfield(Field{2},'ListGlobalAttribute')& ~isempty(Field{2}.ListGlobalAttribute)
|
---|
| 2128 | for iline=1:length(Field{2}.ListGlobalAttribute)
|
---|
| 2129 | Tabcell{iline,1}=Field{2}.ListGlobalAttribute{iline};
|
---|
| 2130 | if isfield(Field{2}, Field{2}.ListGlobalAttribute{iline})
|
---|
| 2131 | eval(['val=Field{2}.' Field{2}.ListGlobalAttribute{iline} ';'])
|
---|
| 2132 | if ischar(val);
|
---|
| 2133 | Tabcell{iline,2}=val;
|
---|
| 2134 | else
|
---|
| 2135 | Tabcell{iline,2}=num2str(val);
|
---|
| 2136 | end
|
---|
| 2137 | end
|
---|
| 2138 | end
|
---|
| 2139 | if ~isempty(Tabcell)
|
---|
| 2140 | Tabchar=cell2tab(Tabcell,'=');
|
---|
| 2141 | Tabchar=[{''};Tabchar];
|
---|
| 2142 | end
|
---|
| 2143 | end
|
---|
| 2144 | set(hhget_field.attributes,'String',Tabchar);%update list of global attributes in get_field
|
---|
| 2145 | else
|
---|
| 2146 | [Field{2},VelType_out_1]=read_civxdata(filename_1,[],VelType_1);
|
---|
| 2147 | CivStage_1=Field{2}.CivStage;
|
---|
| 2148 | end
|
---|
[45] | 2149 | if ~isequal(FileType,'netcdf')
|
---|
[2] | 2150 | VelType_out=VelType_out_1;
|
---|
| 2151 | end
|
---|
| 2152 | end
|
---|
| 2153 | end
|
---|
| 2154 |
|
---|
[59] | 2155 | %store the second field for possible latter use
|
---|
| 2156 | if numel(Field)==2
|
---|
| 2157 | UvData.Field_1=Field{2};
|
---|
| 2158 | end
|
---|
| 2159 |
|
---|
[2] | 2160 | %update the display buttons for the first velocity type (first menuline)
|
---|
| 2161 | veltype_handles=[handles.civ1 handles.interp1 handles.filter1 handles.civ2 handles.interp2 handles.filter2];
|
---|
[45] | 2162 | if ~isequal(FileType,'netcdf')
|
---|
[2] | 2163 | reset_vel_type(veltype_handles)
|
---|
[59] | 2164 | elseif isempty(VelType) && ~isequal(FieldName,'get_field...')
|
---|
[2] | 2165 | set_veltype_display(veltype_handles,CivStage)%update the display of available velocity types for the first field
|
---|
| 2166 | if isempty(VelType_out)
|
---|
| 2167 | reset_vel_type(veltype_handles)
|
---|
| 2168 | else
|
---|
| 2169 | handle1=eval(['handles.' VelType_out]);
|
---|
| 2170 | reset_vel_type(veltype_handles,handle1)
|
---|
| 2171 | end
|
---|
| 2172 | end
|
---|
| 2173 |
|
---|
| 2174 | %update the display buttons for the second velocity type (second menuline)
|
---|
| 2175 | veltype_handles_1=[handles.civ1_1 handles.interp1_1 handles.filter1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1];
|
---|
[45] | 2176 | if ~isequal(FileType_1,'netcdf')
|
---|
[2] | 2177 | reset_vel_type(veltype_handles_1)
|
---|
[59] | 2178 | elseif isempty(VelType_1) && ~isequal(FieldName_1,'get_field...')
|
---|
[2] | 2179 | set_veltype_display(veltype_handles_1,CivStage_1)%update the display of available velocity types for the first field
|
---|
| 2180 | if isempty(VelType_out_1)
|
---|
| 2181 | reset_vel_type(veltype_handles_1)
|
---|
| 2182 | else
|
---|
| 2183 | handle1=eval(['handles.' VelType_out_1 '_1']);
|
---|
| 2184 | reset_vel_type(veltype_handles_1,handle1)
|
---|
| 2185 | end
|
---|
| 2186 | end
|
---|
| 2187 |
|
---|
| 2188 | %introduce w as background image by default for a new series (only for nbdim=2)
|
---|
| 2189 | if ~isfield(UvData,'NewSeries')
|
---|
| 2190 | UvData.NewSeries=1;
|
---|
| 2191 | end
|
---|
| 2192 | %put W as background image by default if NbDim=2:
|
---|
[45] | 2193 | if ~isfield(UvData,'NbDim')||isempty(UvData.NbDim)||~isequal(UvData.NbDim,3)
|
---|
[2] | 2194 | if UvData.NewSeries && isequal(get(handles.SubField,'Value'),0) && isfield(Field{1},'W') && ~isempty(Field{1}.W);
|
---|
| 2195 | set(handles.SubField,'Value',1);
|
---|
[45] | 2196 | %menu=update_menu(handles.Fields_1,'w');%update the menu for the background scalar nd set the choice to 'w'
|
---|
[2] | 2197 | set(handles.RootPath_1,'String','"')
|
---|
| 2198 | set(handles.RootFile_1,'String','"')
|
---|
| 2199 | set(handles.SubDir_1,'String','"');
|
---|
| 2200 | [indices]=name_generator('',num_i1,num_j1,'',NomType,1,num_i2,num_j2,'');
|
---|
| 2201 | set(handles.FileIndex_1,'String',indices)
|
---|
| 2202 | set(handles.FileExt_1,'String','"');
|
---|
| 2203 | set(handles.Fields_1,'Visible','on');
|
---|
| 2204 | set(handles.Fields_1,'Visible','on');
|
---|
| 2205 | set(handles.RootPath_1,'Visible','on')
|
---|
| 2206 | set(handles.RootFile_1,'Visible','on')
|
---|
| 2207 | set(handles.SubDir_1,'Visible','on');
|
---|
| 2208 | set(handles.FileIndex_1,'Visible','on');
|
---|
| 2209 | set(handles.FileExt_1,'Visible','on');
|
---|
| 2210 | set(handles.Fields_1,'Visible','on');
|
---|
| 2211 | Field{1}.AName='w';
|
---|
| 2212 | testscal=1;
|
---|
| 2213 | end
|
---|
| 2214 | end
|
---|
| 2215 |
|
---|
| 2216 | %multislice case
|
---|
[59] | 2217 | if ~isempty(filename) &&(~isfield(UvData,'NbDim') || isequal(UvData.NbDim,2))&&...%2D case
|
---|
[2] | 2218 | isfield(UvData,'XmlData') && isfield(UvData.XmlData,'GeometryCalib')&& isfield(UvData.XmlData.GeometryCalib,'SliceCoord')
|
---|
| 2219 | siz=size(UvData.XmlData.GeometryCalib.SliceCoord);
|
---|
| 2220 | if siz(1)>1
|
---|
| 2221 | NbSlice=siz(1);
|
---|
| 2222 | set(handles.slices,'Visible','on')
|
---|
| 2223 | set(handles.slices,'Value',1)
|
---|
| 2224 | else
|
---|
| 2225 | NbSlice=1;
|
---|
| 2226 | end
|
---|
| 2227 | set(handles.nb_slice,'String',num2str(NbSlice))
|
---|
[59] | 2228 | slices_Callback(handles.uvmat, [], handles)
|
---|
[2] | 2229 | end
|
---|
| 2230 |
|
---|
| 2231 | %store the current open names, fields and vel types in uvmat interface
|
---|
| 2232 | UvData.filename=filename;
|
---|
| 2233 | UvData.filename_1=filename_1;
|
---|
| 2234 | UvData.VelType=VelType;
|
---|
| 2235 | UvData.VelType_1=VelType_1;
|
---|
| 2236 | UvData.FieldName=FieldName;
|
---|
| 2237 | UvData.FieldName_1=FieldName_1;
|
---|
| 2238 | if ~isempty(scal_color)
|
---|
| 2239 | UvData.CName=scal_color;
|
---|
| 2240 | end
|
---|
| 2241 |
|
---|
| 2242 | %coordinate transform or user fct
|
---|
| 2243 | XmlData=[];%default
|
---|
| 2244 | if isfield(UvData,'XmlData')%use geometry calib recorded from the ImaDoc xml file as first priority
|
---|
| 2245 | XmlData=UvData.XmlData;
|
---|
| 2246 | end
|
---|
| 2247 | XmlData_1=[];%default
|
---|
| 2248 | if isfield(UvData,'XmlData_1')
|
---|
| 2249 | XmlData_1=UvData.XmlData_1;
|
---|
| 2250 | end
|
---|
[39] | 2251 | menu_transform=get(handles.transform_fct,'String');
|
---|
| 2252 | choice_value=get(handles.transform_fct,'Value');
|
---|
| 2253 | transform_list=get(handles.transform_fct,'UserData');
|
---|
| 2254 | transform=transform_list{choice_value};%selected function handles
|
---|
[2] | 2255 |
|
---|
| 2256 | % z index
|
---|
[59] | 2257 | if ~isempty(filename)
|
---|
[2] | 2258 | Field{1}.ZIndex=mod(num_i1-1,nbslice)+1;
|
---|
| 2259 | end
|
---|
[59] | 2260 |
|
---|
[2] | 2261 | %px to phys or other transform on field
|
---|
[59] | 2262 | if ~isempty(transform)
|
---|
[2] | 2263 | if length(Field)>=2
|
---|
| 2264 | Field{2}.ZIndex=mod(num_i1-1,nbslice)+1;
|
---|
[38] | 2265 | [Field{1},Field{2}]=transform(Field{1},XmlData,Field{2},XmlData_1);
|
---|
[2] | 2266 | if isempty(Field{2})
|
---|
| 2267 | Field(2)=[];
|
---|
| 2268 | end
|
---|
| 2269 | else
|
---|
[38] | 2270 | Field{1}=transform(Field{1},XmlData);
|
---|
[2] | 2271 | end
|
---|
| 2272 | end
|
---|
| 2273 |
|
---|
| 2274 | %calculate scalar
|
---|
[45] | 2275 | if isequal(FileType,'netcdf') && ~isequal(FieldName,'get_field...')%
|
---|
[2] | 2276 | Field{1}=calc_field(InputField,Field{1});
|
---|
| 2277 | end
|
---|
[59] | 2278 | if length(Field)==2 && ~test_keepdata_1 && isequal(FileType_1,'netcdf') && ~isequal(FieldName_1,'get_field...')
|
---|
[2] | 2279 | Field{2}=calc_field(InputField_1,Field{2});
|
---|
| 2280 | end
|
---|
| 2281 |
|
---|
| 2282 | % combine the two input fields (e.g. substract velocity fields)
|
---|
| 2283 | if numel(Field)==2
|
---|
[59] | 2284 | UvData.Field=sub_field(Field{1},Field{2}); %TO UPDATE FOR MORE GENERAL INPUT
|
---|
[2] | 2285 | else
|
---|
| 2286 | UvData.Field=Field{1};
|
---|
| 2287 | end
|
---|
[59] | 2288 |
|
---|
[2] | 2289 | UvData.NewSeries=0;% put to 0 the test for a new field series (set by RootPath_callback)
|
---|
| 2290 | % test 3D , default projection menuplane and typical mesh (needed to menuopen set_object)
|
---|
| 2291 | test_x=0;
|
---|
| 2292 | test_z=0;% test for unstructured z coordinate
|
---|
| 2293 | UvData.ZMax=0;
|
---|
| 2294 | UvData.ZMin=0;%default
|
---|
| 2295 | UvData.Mesh=1; %default
|
---|
| 2296 | [UvData.Field,errormsg]=check_field_structure(UvData.Field);
|
---|
| 2297 | if ~isempty(errormsg)
|
---|
[59] | 2298 | errormsg=['error in uvmat/run0_Callback/check_field_structure: ' errormsg];
|
---|
[2] | 2299 | return
|
---|
| 2300 | end
|
---|
| 2301 | [CellVarIndex,NbDim,VarType]=find_field_indices(UvData.Field);
|
---|
| 2302 | [NbDim,imax]=max(NbDim);
|
---|
| 2303 | if isempty(imax)
|
---|
[45] | 2304 | % DimVarIndex=0;
|
---|
[2] | 2305 | coord_x=[];
|
---|
| 2306 | else
|
---|
[45] | 2307 | % VarIndex=CellVarIndex{imax};
|
---|
[2] | 2308 | coord_x=VarType{imax}.coord_x;
|
---|
| 2309 | end
|
---|
[45] | 2310 | if isfield(UvData,'NbDim') && ~isempty(UvData.NbDim)
|
---|
[2] | 2311 | NbDim=UvData.NbDim;
|
---|
| 2312 | else
|
---|
| 2313 | UvData.NbDim=NbDim;
|
---|
| 2314 | end
|
---|
[45] | 2315 | if ~isempty(CellVarIndex) && ~isempty(VarType{imax}.coord_x) && ~isempty(VarType{imax}.coord_y) %unstructured coordinate z
|
---|
[2] | 2316 | XName=UvData.Field.ListVarName{VarType{imax}.coord_x};
|
---|
| 2317 | YName=UvData.Field.ListVarName{VarType{imax}.coord_y};
|
---|
| 2318 | test_x=1;
|
---|
[45] | 2319 | elseif isfield(UvData.Field,'X') && isfield(UvData.Field,'Y')
|
---|
[2] | 2320 | XName='X';
|
---|
| 2321 | YName='Y';
|
---|
| 2322 | test_x=1;
|
---|
| 2323 | end
|
---|
| 2324 | if test_x
|
---|
| 2325 | eval(['UvData.XMax=max(UvData.Field.' XName ');'])
|
---|
| 2326 | eval(['UvData.XMin=min(UvData.Field.' XName ');'])
|
---|
| 2327 | eval(['UvData.YMax=max(UvData.Field.' YName ');'])
|
---|
| 2328 | eval(['UvData.YMin=min(UvData.Field.' YName ');'])
|
---|
| 2329 | eval(['nbvec=length(UvData.Field.' XName ');'])
|
---|
| 2330 | if NbDim==3%
|
---|
[45] | 2331 | if ~isempty(CellVarIndex) && ~isempty(VarType{imax}.coord_z)%unstructured coordinate z
|
---|
[42] | 2332 | ZName=UvData.Field.ListVarName{VarType{imax}.coord_z};
|
---|
[2] | 2333 | eval(['UvData.ZMax=max(UvData.Field.' ZName ');'])
|
---|
| 2334 | eval(['UvData.ZMin=min(UvData.Field.' ZName ');'])
|
---|
| 2335 | test_z=1;
|
---|
| 2336 | elseif isfield(UvData,'Z')% usual civ data
|
---|
| 2337 | UvData.ZMax=max(UvData.Z);
|
---|
| 2338 | UvData.ZMin=min(UvData.Z);
|
---|
| 2339 | test_z=1;
|
---|
| 2340 | end
|
---|
| 2341 | end
|
---|
| 2342 | if isequal(UvData.ZMin,UvData.ZMax)%no z dependency
|
---|
| 2343 | NbDim=2;
|
---|
| 2344 | test_z=0;
|
---|
| 2345 | end
|
---|
| 2346 | if test_z
|
---|
| 2347 | UvData.Mesh=((UvData.XMax-UvData.XMin)*(UvData.YMax-UvData.YMin)*(UvData.ZMax-UvData.ZMin))/nbvec;% volume per vector
|
---|
| 2348 | UvData.Mesh=(UvData.Mesh)^(1/3);
|
---|
| 2349 | else
|
---|
| 2350 | UvData.Mesh=sqrt((UvData.XMax-UvData.XMin)*(UvData.YMax-UvData.YMin)/nbvec);%2D
|
---|
| 2351 | end
|
---|
| 2352 | end
|
---|
| 2353 | %case of structured coordinates
|
---|
| 2354 | if isfield(UvData.Field,'AX') & isfield(UvData.Field,'AY')& isfield(UvData.Field,'A')
|
---|
| 2355 | UvData.XMax=max(UvData.Field.AX);
|
---|
| 2356 | UvData.XMin=min(UvData.Field.AX);
|
---|
| 2357 | UvData.YMax=max(UvData.Field.AY);
|
---|
| 2358 | UvData.YMin=min(UvData.Field.AY);
|
---|
| 2359 | np_A=size(UvData.Field.A);
|
---|
| 2360 | UvData.Mesh=sqrt((UvData.XMax-UvData.XMin)*(UvData.YMax-UvData.YMin)/((np_A(1)-1) * (np_A(2)-1))) ;
|
---|
| 2361 | end
|
---|
| 2362 | if isempty(coord_x)&~isempty(CellVarIndex)
|
---|
| 2363 | VarIndex=CellVarIndex{imax}; % list of variable indices
|
---|
| 2364 | DimIndex=UvData.Field.VarDimIndex{VarIndex(1)}; %list of dim indices for the variable
|
---|
| 2365 | if NbDim==3
|
---|
| 2366 | nbpoints=UvData.Field.DimValue(DimIndex(1));
|
---|
| 2367 | %Zvar=DimVarIndex(DimIndex(1));
|
---|
| 2368 | %Zvar=DimVarIndex(1);
|
---|
| 2369 | Zvar=VarType{imax}.coord_3;
|
---|
| 2370 | if Zvar~=0 % z is a dimension variable
|
---|
| 2371 | ZName=UvData.Field.ListVarName{Zvar};
|
---|
| 2372 | eval(['UvData.ZMax=max(UvData.Field.' ZName ');'])
|
---|
| 2373 | eval(['UvData.ZMin=min(UvData.Field.' ZName ');'])
|
---|
| 2374 | else
|
---|
| 2375 | testcoord_z=0;
|
---|
| 2376 | if length(UvData.Field.VarAttribute)>=VarIndex(1)
|
---|
| 2377 | if isfield(UvData.Field.VarAttribute{VarIndex(1)},'Coord_1')%regular grid
|
---|
| 2378 | Coord_z=UvData.Field.VarAttribute{VarIndex(1)}.Coord_1;
|
---|
| 2379 | UvData.ZMax=max(Coord_z);
|
---|
| 2380 | UvData.ZMin=min(Coord_z);
|
---|
| 2381 | testcoord_z=1;
|
---|
| 2382 | end
|
---|
| 2383 | end
|
---|
| 2384 | if ~testcoord_z
|
---|
| 2385 | UvData.ZMin=1;
|
---|
| 2386 | UvData.ZMax=UvData.Field.DimValue(DimIndex(1));
|
---|
| 2387 | end
|
---|
| 2388 | end
|
---|
| 2389 | UvData.Mesh=(UvData.ZMax-UvData.ZMin)/(nbpoints-1);
|
---|
| 2390 | elseif NbDim==2
|
---|
| 2391 | nbpoints_y=UvData.Field.DimValue(DimIndex(1));
|
---|
| 2392 | Yvar=VarType{imax}.coord_y;
|
---|
| 2393 | if Yvar~=0 % x is a dimension variable
|
---|
| 2394 | YName=UvData.Field.ListVarName{Yvar};
|
---|
| 2395 | eval(['UvData.YMax=max(UvData.Field.' YName ');'])
|
---|
| 2396 | eval(['UvData.YMin=min(UvData.Field.' YName ');'])
|
---|
| 2397 | else
|
---|
| 2398 | testcoord_y=0;
|
---|
| 2399 | if ~testcoord_y
|
---|
| 2400 | UvData.YMin=1;
|
---|
| 2401 | UvData.YMax=UvData.Field.DimValue(DimIndex(1));
|
---|
| 2402 | end
|
---|
| 2403 | end
|
---|
| 2404 | DY=(UvData.YMax-UvData.YMin)/(nbpoints_y-1);
|
---|
| 2405 | nbpoints_x=UvData.Field.DimValue(DimIndex(2));
|
---|
| 2406 | Xvar=VarType{imax}.coord_x;
|
---|
| 2407 | if Xvar~=0 % x is a dimension variable
|
---|
| 2408 | XName=UvData.Field.ListVarName{Xvar};
|
---|
| 2409 | eval(['UvData.XMax=max(UvData.Field.' XName ');'])
|
---|
| 2410 | eval(['UvData.XMin=min(UvData.Field.' XName ');'])
|
---|
| 2411 | else
|
---|
| 2412 | testcoord_x=0;
|
---|
| 2413 | if ~testcoord_x
|
---|
| 2414 | UvData.XMin=1;
|
---|
| 2415 | UvData.XMax=UvData.Field.DimValue(DimIndex(2));
|
---|
| 2416 | end
|
---|
| 2417 | end
|
---|
| 2418 | DX=(UvData.XMax-UvData.XMin)/(nbpoints_x-1);
|
---|
| 2419 | UvData.Mesh= sqrt(DX*DY);
|
---|
| 2420 | end
|
---|
| 2421 | end
|
---|
| 2422 |
|
---|
| 2423 | %create a default projection menuplane
|
---|
| 2424 | UvData.Object{1}.Style='plane';%main plotting plane
|
---|
| 2425 | UvData.Object{1}.ProjMode='projection';%main plotting plane
|
---|
| 2426 | if ~isfield(UvData.Object{1},'plotaxes')
|
---|
| 2427 | UvData.Object{1}.plotaxes=handles.axes3;%default plotting axis
|
---|
| 2428 | set(handles.list_object,'String',{'1-PLANE';'...'});
|
---|
| 2429 | set(handles.list_object,'Value',1);
|
---|
| 2430 | end
|
---|
| 2431 |
|
---|
| 2432 | %3D case (menuvolume)
|
---|
| 2433 | if NbDim==3
|
---|
| 2434 | UvData.Object{1}.NbDim=UvData.NbDim;%test for 3D objects
|
---|
| 2435 | UvData.Object{1}.RangeZ=UvData.Mesh;%main plotting plane
|
---|
| 2436 | UvData.Object{1}.Coord(1,3)=(UvData.ZMin+UvData.ZMax)/2;%section at a middle plane chosen
|
---|
| 2437 | UvData.Object{1}.Phi=0;
|
---|
| 2438 | UvData.Object{1}.Theta=0;
|
---|
| 2439 | UvData.Object{1}.Psi=0;
|
---|
| 2440 | UvData.Object{1}.HandlesDisplay=plot(0,0,'Tag','proj_object');% A REVOIR
|
---|
| 2441 | PlotHandles=get_plot_handles(handles);
|
---|
| 2442 | ZBounds(1)=UvData.ZMin; %minimum for the Z slider
|
---|
| 2443 | ZBounds(2)=UvData.ZMax;%maximum for the Z slider
|
---|
| 2444 | set_object(UvData.Object{1},PlotHandles,ZBounds);
|
---|
| 2445 | set(handles.list_object,'Value',1);
|
---|
| 2446 | %multilevel case (single menuplane in a 3D space)
|
---|
| 2447 | elseif isfield(UvData,'Z')
|
---|
| 2448 | if isfield(UvData,'CoordType')& isequal(UvData.CoordType,'phys') & isfield(UvData,'XmlData')
|
---|
| 2449 | XmlData=UvData.XmlData;
|
---|
| 2450 | if isfield(XmlData,'PlanePos')
|
---|
| 2451 | UvData.Object{1}.Coord=XmlData.PlanePos(UvData.ZIndex,:);
|
---|
| 2452 | end
|
---|
| 2453 | if isfield(XmlData,'PlaneAngle')
|
---|
| 2454 | siz=size(XmlData.PlaneAngle);
|
---|
| 2455 | indangle=min(siz(1),UvData.ZIndex);%take first angle if a single angle is defined (translating scanning)
|
---|
| 2456 | UvData.Object{1}.Phi=XmlData.PlaneAngle(indangle,1);
|
---|
| 2457 | UvData.Object{1}.Theta=XmlData.PlaneAngle(indangle,2);
|
---|
| 2458 | UvData.Object{1}.Psi=XmlData.PlaneAngle(indangle,3);
|
---|
| 2459 | end
|
---|
| 2460 | elseif isfield(UvData,'ZIndex')
|
---|
| 2461 | UvData.Object{1}.ZObject=UvData.ZIndex;
|
---|
| 2462 | end
|
---|
| 2463 | end
|
---|
| 2464 |
|
---|
| 2465 | %Plot the projections on all existing projection objects
|
---|
| 2466 | keeplim=get(handles.FixedLimits,'Value');
|
---|
| 2467 | %reset the min and max of scalar if only the mask is displayed
|
---|
| 2468 | if isfield(UvData,'Mask')&~isfield(UvData,'A')
|
---|
| 2469 | set(handles.MinA,'String','0')
|
---|
| 2470 | set(handles.MaxA,'String','255')
|
---|
| 2471 | end
|
---|
| 2472 |
|
---|
| 2473 | Object=UvData.Object;
|
---|
| 2474 | for iobj=1:length(Object)
|
---|
| 2475 | if ~isempty(Object{iobj})%& isfield(Object{iobj},'plotaxes')& ishandle(Object{iobj}.plotaxes)
|
---|
| 2476 | %Projeter les champs sur l'objet:*
|
---|
| 2477 | ObjectData=proj_field(UvData.Field,Object{iobj},iobj);
|
---|
| 2478 |
|
---|
| 2479 | %use of mask
|
---|
| 2480 | if isfield(ObjectData,'NbDim')&isequal(ObjectData.NbDim,2)
|
---|
| 2481 | if isfield(ObjectData,'Mask') & isfield(ObjectData,'A')
|
---|
| 2482 | flag_mask=double(ObjectData.Mask>200);%=0 for masked regions
|
---|
| 2483 | AX=ObjectData.AX;
|
---|
| 2484 | AY=ObjectData.AY;
|
---|
| 2485 | MaskX=ObjectData.MaskX;
|
---|
| 2486 | MaskY=ObjectData.MaskY;
|
---|
| 2487 | if ~isequal(MaskX,AX)|~isequal(MaskY,AY)
|
---|
| 2488 | nxy=size(flag_mask);
|
---|
| 2489 | sizpx=(ObjectData.MaskX(end)-ObjectData.MaskX(1))/(nxy(2)-1);%size of a mask pixel
|
---|
| 2490 | sizpy=(ObjectData.MaskY(1)-ObjectData.MaskY(end))/(nxy(1)-1);
|
---|
| 2491 | x_mask=[ObjectData.MaskX(1):sizpx:ObjectData.MaskX(end)]; % pixel x coordinates for image display
|
---|
| 2492 | y_mask=[ObjectData.MaskY(1):-sizpy:ObjectData.MaskY(end)];% pixel x coordinates for image display
|
---|
| 2493 | %project on the positions of the scalar
|
---|
| 2494 | npxy=size(ObjectData.A);
|
---|
| 2495 | dxy(1)=(ObjectData.AY(end)-ObjectData.AY(1))/(npxy(1)-1);%grid mesh in y
|
---|
| 2496 | dxy(2)=(ObjectData.AX(end)-ObjectData.AX(1))/(npxy(2)-1);%grid mesh in x
|
---|
| 2497 | xi=[ObjectData.AX(1):dxy(2):ObjectData.AX(end)];
|
---|
| 2498 | yi=[ObjectData.AY(1):dxy(1):ObjectData.AY(end)];
|
---|
| 2499 | [XI,YI]=meshgrid(xi,yi);% creates the matrix of regular coordinates
|
---|
| 2500 | flag_mask = interp2(x_mask,y_mask,flag_mask,XI,YI);
|
---|
| 2501 | end
|
---|
| 2502 | AClass=class(ObjectData.A);
|
---|
| 2503 | ObjectData.A=flag_mask.*double(ObjectData.A);
|
---|
| 2504 | ObjectData.A=feval(AClass,ObjectData.A);
|
---|
| 2505 | ind_off=[];
|
---|
| 2506 | if isfield(ObjectData,'ListVarName')
|
---|
| 2507 | for ilist=1:length(ObjectData.ListVarName)
|
---|
| 2508 | if isequal(ObjectData.ListVarName{ilist},'Mask')|isequal(ObjectData.ListVarName{ilist},'MaskX')|isequal(ObjectData.ListVarName{ilist},'MaskY')
|
---|
| 2509 | ind_off=[ind_off ilist];
|
---|
| 2510 | end
|
---|
| 2511 | end
|
---|
| 2512 | ObjectData.ListVarName(ind_off)=[];
|
---|
| 2513 | ObjectData.VarDimIndex(ind_off)=[];
|
---|
| 2514 | ind_off=[];
|
---|
| 2515 | for ilist=1:length(ObjectData.ListDimName)
|
---|
| 2516 | if isequal(ObjectData.ListDimName{ilist},'MaskX')|isequal(ObjectData.ListDimName{ilist},'MaskY')
|
---|
| 2517 | ind_off=[ind_off ilist];
|
---|
| 2518 | end
|
---|
| 2519 | end
|
---|
| 2520 | ObjectData.ListDimName(ind_off)=[];
|
---|
| 2521 | ObjectData.DimValue(ind_off)=[];
|
---|
| 2522 | end
|
---|
| 2523 | end
|
---|
| 2524 | end
|
---|
| 2525 | if ~isempty(ObjectData)
|
---|
| 2526 | haxes=[];%default
|
---|
| 2527 | if isfield(Object{iobj},'plotaxes')
|
---|
| 2528 | haxes=Object{iobj}.plotaxes;%axes used for representing the projection on the object
|
---|
| 2529 | end
|
---|
| 2530 | PosColorbar=[];%default: no colorbar
|
---|
| 2531 | if ishandle(haxes) & isequal(get(haxes,'Tag'),'axes3')& isfield(UvData,'PosColorbar')
|
---|
| 2532 | PosColorbar=UvData.PosColorbar;%prescribe the colorbar position on the uvmat interface
|
---|
| 2533 | else
|
---|
| 2534 | PosColorbar='*';%default position
|
---|
| 2535 | end
|
---|
| 2536 | PlotParam=read_plot_param(handles);%read plotting parameters on the uvmat interface
|
---|
| 2537 | [PlotType,ScalOut,UvData.Object{iobj}.plotaxes]=plot_field(ObjectData,haxes,PlotParam,keeplim,PosColorbar);
|
---|
| 2538 | if isequal(PlotType,'none')
|
---|
| 2539 | hget_field=findobj(allchild(0),'name','get_field');
|
---|
| 2540 | if isempty(hget_field)
|
---|
| 2541 | get_field([],ObjectData)% the projected field cannot be automatically plotted: use get_field to specify the variablesdelete(hget_field)
|
---|
| 2542 | else
|
---|
[59] | 2543 | errormsg='The field defined by get_field cannot be plotted';
|
---|
| 2544 | return
|
---|
[2] | 2545 | end
|
---|
| 2546 | end
|
---|
| 2547 | UvData.Object{iobj}.PlotParam=ScalOut; %record the plotting parameters
|
---|
[59] | 2548 | end
|
---|
[2] | 2549 | end
|
---|
| 2550 | end
|
---|
| 2551 |
|
---|
| 2552 | %display the updated plotting parameters for the base menuplane
|
---|
| 2553 | write_plot_param(handles,UvData.Object{1}.PlotParam);% update the display of the plotting parameters
|
---|
[45] | 2554 | set(handles.uvmat,'UserData',UvData)
|
---|
[2] | 2555 |
|
---|
| 2556 | %update the mask
|
---|
| 2557 | if isequal(get(handles.mask_test,'Value'),1)%if the mask option is on
|
---|
| 2558 | update_mask(handles,num_i1,num_i2);
|
---|
| 2559 | end
|
---|
| 2560 |
|
---|
| 2561 | %prepare the menus of histograms (for the whole menuvolume in 3D case)
|
---|
| 2562 | menu_histo=(UvData.Field.ListVarName)';
|
---|
| 2563 | ind_bad=[];
|
---|
| 2564 | nb_histo=1;
|
---|
| 2565 | for ivar=1:numel(menu_histo)
|
---|
| 2566 | if isfield(UvData.Field,'VarAttribute') && numel(UvData.Field.VarAttribute)>=ivar && isfield(UvData.Field.VarAttribute{ivar},'Role')
|
---|
| 2567 | Role=UvData.Field.VarAttribute{ivar}.Role;
|
---|
| 2568 | switch Role
|
---|
| 2569 | case {'coord_x','coord_y','coord_z','dimvar'}
|
---|
| 2570 | ind_bad=[ind_bad ivar];
|
---|
| 2571 | case {'vector_y'}
|
---|
| 2572 | nb_histo=nb_histo+1;
|
---|
| 2573 | end
|
---|
| 2574 | end
|
---|
| 2575 | DimCell=UvData.Field.VarDimName{ivar};
|
---|
| 2576 | DimName='';
|
---|
| 2577 | if ischar(DimCell)
|
---|
| 2578 | DimName=DimCell;
|
---|
| 2579 | elseif iscell(DimCell)&& numel(DimCell)==1
|
---|
| 2580 | DimName=DimCell{1};
|
---|
| 2581 | end
|
---|
| 2582 | if strcmp(DimName,menu_histo{ivar})
|
---|
| 2583 | ind_bad=[ind_bad ivar];
|
---|
| 2584 | end
|
---|
| 2585 | end
|
---|
| 2586 | menu_histo(ind_bad)=[];
|
---|
| 2587 | test_v=0;
|
---|
| 2588 | if ~isempty(menu_histo)
|
---|
| 2589 | set(handles.histo1_menu,'Value',1)
|
---|
| 2590 | set(handles.histo1_menu,'String',menu_histo)
|
---|
[59] | 2591 | histo1_menu_Callback(handles.histo1_menu, [], handles)
|
---|
[2] | 2592 | if nb_histo > 1
|
---|
| 2593 | test_v=1;
|
---|
| 2594 | set(handles.histo2_menu,'Visible','on')
|
---|
| 2595 | set(handles.histo_v,'Visible','on')
|
---|
| 2596 | set(handles.histo2_menu,'String',menu_histo)
|
---|
| 2597 | set(handles.histo2_menu,'Value',2)
|
---|
[59] | 2598 | histo2_menu_Callback(handles.histo2_menu,[], handles)
|
---|
[2] | 2599 | end
|
---|
| 2600 | end
|
---|
| 2601 | if ~test_v
|
---|
| 2602 | set(handles.histo2_menu,'Visible','off')
|
---|
| 2603 | set(handles.histo_v,'Visible','off')
|
---|
| 2604 | cla(handles.histo_v)
|
---|
| 2605 | set(handles.histo2_menu,'Value',1)
|
---|
| 2606 | end
|
---|
| 2607 |
|
---|
| 2608 | %display time
|
---|
| 2609 | testimedoc=0;
|
---|
| 2610 | if isfield(UvData,'XmlData') && isfield(UvData.XmlData,'Time')
|
---|
| 2611 | if isempty(num_i2)
|
---|
| 2612 | num_i2=num_i1;
|
---|
| 2613 | end
|
---|
| 2614 | if isempty(num_j1)
|
---|
| 2615 | num_j1=1;
|
---|
| 2616 | end
|
---|
| 2617 | if isempty(num_j2)
|
---|
| 2618 | num_j2=num_j1;
|
---|
| 2619 | end
|
---|
| 2620 | siz=size(UvData.XmlData.Time);
|
---|
| 2621 | if siz(1)>=max(num_i1,num_i2) & siz(2)>=max(num_j1,num_j2)
|
---|
| 2622 | abstime=(UvData.XmlData.Time(num_i1,num_j1)+UvData.XmlData.Time(num_i2,num_j2))/2;%overset the time read from files
|
---|
| 2623 | dt=(UvData.XmlData.Time(num_i2,num_j2)-UvData.XmlData.Time(num_i1,num_j1));
|
---|
| 2624 | testimedoc=1;
|
---|
| 2625 | end
|
---|
| 2626 | end
|
---|
| 2627 | if isfield(UvData,'XmlData_1') && isfield(UvData.XmlData_1,'Time')
|
---|
| 2628 | [P,F,str1,str2,str_a,str_b,E,NomType]=name2display(['xx' get(handles.FileIndex_1,'String') get(handles.FileExt_1,'String')]);
|
---|
| 2629 | num_i2=str2num(str2);
|
---|
| 2630 | if isempty(num_i2)
|
---|
| 2631 | num_i2=num_i1;
|
---|
| 2632 | end
|
---|
| 2633 | num_j1=str2num(str_a);
|
---|
| 2634 | if isempty(num_j1)
|
---|
| 2635 | num_j1=1;
|
---|
| 2636 | end
|
---|
| 2637 | num_j2=str2num(str_b);
|
---|
| 2638 | if isempty(num_j2)
|
---|
| 2639 | num_j2=num_j1;
|
---|
| 2640 | end
|
---|
| 2641 | num_i1=str2num(str1);
|
---|
| 2642 | siz=size(UvData.XmlData_1.Time);
|
---|
| 2643 | if siz(1)>=max(num_i1,num_i2) & siz(2)>=max(num_j1,num_j2)
|
---|
| 2644 | abstime_1=(UvData.XmlData_1.Time(num_i1,num_j1)+UvData.XmlData_1.Time(num_i2,num_j2))/2;%overset the time read from files
|
---|
| 2645 | end
|
---|
| 2646 | end
|
---|
| 2647 | set(handles.abs_time,'String',num2str(abstime,4))
|
---|
| 2648 | set(handles.abs_time_1,'String',num2str(abstime_1,4))
|
---|
| 2649 | if testimedoc && isfield(UvData,'dt')
|
---|
| 2650 | dt=UvData.dt;
|
---|
| 2651 | end
|
---|
| 2652 | if isequal(dt,0)
|
---|
| 2653 | set(handles.Dt_txt,'String','')
|
---|
| 2654 | else
|
---|
| 2655 | if ~(isfield(UvData,'TimeUnit') && ~isempty(UvData.TimeUnit))
|
---|
| 2656 | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' 10^(-3)'] )
|
---|
| 2657 | else
|
---|
| 2658 | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' m' UvData.TimeUnit] )
|
---|
| 2659 | end
|
---|
| 2660 | end
|
---|
| 2661 | set(handles.run0,'BackgroundColor',[1 0 0])
|
---|
| 2662 |
|
---|
| 2663 |
|
---|
| 2664 |
|
---|
| 2665 | %-------------------------------------------------------------------
|
---|
| 2666 | % --- translate coordinate to matrix index
|
---|
| 2667 | %-------------------------------------------------------------------
|
---|
| 2668 | function [indx,indy]=pos2ind(x0,rangx0,nxy)
|
---|
| 2669 | indx=1+round((nxy(2)-1)*(x0-rangx0(1))/(rangx0(2)-rangx0(1)));% index x of pixel
|
---|
| 2670 | indy=1+round((nxy(1)-1)*(y12-rangy0(1))/(rangy0(2)-rangy0(1)));% index y of pixel
|
---|
| 2671 |
|
---|
| 2672 | %-------------------------------------------------------------------
|
---|
| 2673 | % --- Executes on button press in 'FixedLimits'.
|
---|
| 2674 | %-------------------------------------------------------------------
|
---|
| 2675 | function FixedLimits_Callback(hObject, eventdata, handles)
|
---|
| 2676 | test=get(handles.FixedLimits,'Value');
|
---|
| 2677 | if test
|
---|
| 2678 | set(handles.FixedLimits,'BackgroundColor',[1 1 0])
|
---|
| 2679 | else
|
---|
| 2680 | set(handles.FixedLimits,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 2681 | end
|
---|
| 2682 |
|
---|
| 2683 | %-------------------------------------------------------------------
|
---|
| 2684 | % --- Executes on button press in auto_xy.
|
---|
| 2685 | function auto_xy_Callback(hObject, eventdata, handles)
|
---|
| 2686 | test=get(handles.auto_xy,'Value');
|
---|
| 2687 | if test
|
---|
| 2688 | set(handles.auto_xy,'BackgroundColor',[1 1 0])
|
---|
| 2689 | cla(handles.axes3)
|
---|
| 2690 | update_plot(handles)
|
---|
| 2691 | else
|
---|
| 2692 | set(handles.auto_xy,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 2693 | update_plot(handles)
|
---|
| 2694 | % axis(handles.axes3,'image')
|
---|
| 2695 | end
|
---|
| 2696 |
|
---|
| 2697 |
|
---|
| 2698 | %-------------------------------------------------------------------
|
---|
| 2699 |
|
---|
| 2700 | %-------------------------------------------------------------------
|
---|
| 2701 | % --- Executes on button press in 'zoom'.
|
---|
| 2702 | %-------------------------------------------------------------------
|
---|
| 2703 | function zoom_Callback(hObject, eventdata, handles)
|
---|
[45] | 2704 | %huvmat=get(handles.zoom,'parent');%general input
|
---|
| 2705 | UvData=get(handles.uvmat,'UserData');
|
---|
[2] | 2706 | if (get(handles.zoom,'Value') == 1);
|
---|
| 2707 | set(handles.zoom,'BackgroundColor',[1 1 0])
|
---|
| 2708 | set(handles.FixedLimits,'Value',1)% propose by default fixed limits for the plotting axes
|
---|
| 2709 | set(handles.FixedLimits,'BackgroundColor',[1 1 0])
|
---|
| 2710 | %UvData.ZoomOn=1; %test for mouse action
|
---|
| 2711 | else
|
---|
| 2712 | set(handles.zoom,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 2713 | %UvData.ZoomOn=0; %test for mouse action
|
---|
| 2714 | end
|
---|
[45] | 2715 | set(handles.uvmat,'UserData',UvData);
|
---|
[2] | 2716 |
|
---|
| 2717 | %-------------------------------------------------------------------
|
---|
| 2718 | %----Executes on button press in 'record': records the current flags of manual correction.
|
---|
| 2719 | %-------------------------------------------------------------------
|
---|
| 2720 | function record_Callback(hObject, eventdata, handles)
|
---|
| 2721 | % [filebase,num_i1,num_j1,num_i2,num_j2,Ext,NomType,SubDir]=read_input_file(handles);
|
---|
| 2722 | filename=read_file_boxes(handles);
|
---|
| 2723 | AxeData=get(gca,'UserData');
|
---|
| 2724 | [erread,message]=fileattrib(filename);
|
---|
[55] | 2725 | if ~isempty(message) && ~isequal(message.UserWrite,1)
|
---|
[2] | 2726 | msgbox_uvmat('ERROR',['no writting access to ' filename])
|
---|
| 2727 | return
|
---|
| 2728 | end
|
---|
| 2729 | test_civ2=isequal(get(handles.civ2,'BackgroundColor'),[1 1 0]);
|
---|
[55] | 2730 | test_civ1=isequal(get(handles.civ1,'BackgroundColor'),[1 1 0]);
|
---|
| 2731 | if ~test_civ2 && ~test_civ1
|
---|
| 2732 | msgbox_uvmat('ERROR','manual correction only possible for CIV1 or CIV2 velocity fields')
|
---|
[2] | 2733 | end
|
---|
[55] | 2734 | if test_civ2
|
---|
| 2735 | nbname='nb_vectors2';
|
---|
| 2736 | flagname='vec2_FixFlag';
|
---|
| 2737 | attrname='fix2';
|
---|
| 2738 | end
|
---|
| 2739 | if test_civ1
|
---|
| 2740 | nbname='nb_vectors';
|
---|
| 2741 | flagname='vec_FixFlag';
|
---|
| 2742 | attrname='fix';
|
---|
| 2743 | end
|
---|
| 2744 | %write fix flags in the netcdf file
|
---|
| 2745 | hhh=which('netcdf.open');% look for built-in matlab netcdf library
|
---|
| 2746 | if ~isequal(hhh,'')% case of new builtin Matlab netcdf library
|
---|
| 2747 | nc=netcdf.open(filename,'NC_WRITE');
|
---|
| 2748 | netcdf.reDef(nc)
|
---|
| 2749 | netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'),attrname,1)
|
---|
| 2750 | dimid = netcdf.inqDimID(nc,nbname);
|
---|
| 2751 | try
|
---|
| 2752 | varid = netcdf.inqVarID(nc,flagname);% look for already existing fixflag variable
|
---|
| 2753 | catch
|
---|
| 2754 | varid=netcdf.defVar(nc,flagname,'double',dimid);%create fixflag variable if it does not exist
|
---|
| 2755 | end
|
---|
| 2756 | netcdf.endDef(nc)
|
---|
| 2757 | netcdf.putVar(nc,varid,AxeData.FF);
|
---|
| 2758 | netcdf.close(nc)
|
---|
| 2759 | else %old netcdf library
|
---|
[56] | 2760 | netcdf_toolbox(filename,AxeData,attrname,nbname,flagname)
|
---|
[55] | 2761 | end
|
---|
[2] | 2762 |
|
---|
[56] | 2763 | function netcdf_toolbox(filename,AxeData,attrname,nbname,flagname)
|
---|
| 2764 | nc=netcdf(filename,'write'); %open netcdf file
|
---|
| 2765 | result=redef(nc);
|
---|
| 2766 | eval(['nc.' attrname '=1;']);
|
---|
| 2767 | theDim=nc(nbname) ;% get the number of velocity vectors
|
---|
| 2768 | nb_vectors=size(theDim);
|
---|
| 2769 | var_FixFlag=ncvar(flagname,nc);% var_FixFlag will be written as the netcdf variable vec_FixFlag
|
---|
| 2770 | var_FixFlag(1:nb_vectors)=AxeData.FF;%
|
---|
| 2771 | fin=close(nc);
|
---|
[2] | 2772 |
|
---|
| 2773 |
|
---|
| 2774 | %-------------------------------------------------------------------
|
---|
| 2775 | %determines the fields to read from the interface
|
---|
| 2776 | %------------------------------------------------------------------
|
---|
| 2777 | function [VelType,civ]=setfield(handles)
|
---|
| 2778 |
|
---|
| 2779 | VelType=[]; %default
|
---|
| 2780 | if (get(handles.civ1,'Value') == 1);
|
---|
| 2781 | VelType='civ1';
|
---|
| 2782 | % interp1
|
---|
| 2783 | elseif (get(handles.interp1,'Value') == 1);
|
---|
| 2784 | VelType='interp1';
|
---|
| 2785 | % filter1
|
---|
| 2786 | elseif (get(handles.filter1,'Value') == 1);
|
---|
| 2787 | VelType='filter1';
|
---|
| 2788 | % CIV2
|
---|
| 2789 | elseif (get(handles.civ2,'Value') == 1);
|
---|
| 2790 | VelType='civ2';
|
---|
| 2791 | % interp2
|
---|
| 2792 | elseif (get(handles.interp2,'Value') == 1);
|
---|
| 2793 | VelType='interp2';
|
---|
| 2794 | % filter2
|
---|
| 2795 | elseif (get(handles.filter2,'Value') == 1);
|
---|
| 2796 | VelType='filter2';
|
---|
| 2797 | end
|
---|
| 2798 |
|
---|
| 2799 | if isequal(get(handles.filter2,'Visible'),'on');
|
---|
| 2800 | civ=6;
|
---|
| 2801 | % interp1
|
---|
| 2802 | elseif isequal(get(handles.interp2,'Visible'),'on');
|
---|
| 2803 | civ=5;
|
---|
| 2804 | % filter1
|
---|
| 2805 | elseif isequal(get(handles.civ2,'Visible'),'on');
|
---|
| 2806 | civ=4;
|
---|
| 2807 | % CIV2
|
---|
| 2808 | elseif isequal(get(handles.filter1,'Visible'),'on');
|
---|
| 2809 | civ=3;
|
---|
| 2810 | % interp2
|
---|
| 2811 | elseif isequal(get(handles.interp1,'Visible'),'on');
|
---|
| 2812 | civ=2;
|
---|
| 2813 | % filter2
|
---|
| 2814 | elseif isequal(get(handles.civ1,'Visible'),'on');
|
---|
| 2815 | civ=1;
|
---|
| 2816 | else
|
---|
| 2817 | civ=0;
|
---|
| 2818 | end
|
---|
| 2819 |
|
---|
| 2820 | %-------------------------------------------------------------------
|
---|
| 2821 | %determines the veltype of the second field to read from the iinterface
|
---|
| 2822 | %------------------------------------------------------------------
|
---|
| 2823 | function VelType=setfield_1(handles)
|
---|
| 2824 |
|
---|
| 2825 | VelType=[]; %default
|
---|
| 2826 | if (get(handles.civ1_1,'Value') == 1);
|
---|
| 2827 | VelType='civ1';
|
---|
| 2828 | % interp1
|
---|
| 2829 | elseif (get(handles.interp1_1,'Value') == 1);
|
---|
| 2830 | VelType='interp1';
|
---|
| 2831 | % filter1
|
---|
| 2832 | elseif (get(handles.filter1_1,'Value') == 1);
|
---|
| 2833 | VelType='filter1';
|
---|
| 2834 | % CIV2
|
---|
| 2835 | elseif (get(handles.civ2_1,'Value') == 1);
|
---|
| 2836 | VelType='civ2';
|
---|
| 2837 | % interp2
|
---|
| 2838 | elseif (get(handles.interp2_1,'Value') == 1);
|
---|
| 2839 | VelType='interp2';
|
---|
| 2840 | % filter2
|
---|
| 2841 | elseif (get(handles.filter2_1,'Value') == 1);
|
---|
| 2842 | VelType='filter2';
|
---|
| 2843 | end
|
---|
| 2844 |
|
---|
| 2845 |
|
---|
| 2846 | %---------------------------------------------------
|
---|
| 2847 | % --- Executes on button press in SubField
|
---|
| 2848 | function SubField_Callback(hObject, eventdata, handles)
|
---|
| 2849 | huvmat=get(handles.run0,'parent');
|
---|
| 2850 | UvData=get(huvmat,'UserData');
|
---|
| 2851 | if get(handles.SubField,'Value')==0% if the subfield button is desactivated
|
---|
| 2852 | set(handles.RootPath_1,'String','')
|
---|
| 2853 | set(handles.RootFile_1,'String','')
|
---|
| 2854 | set(handles.SubDir_1,'String','');
|
---|
| 2855 | set(handles.FileIndex_1,'String','');
|
---|
| 2856 | set(handles.FileExt_1,'String','');
|
---|
| 2857 | set(handles.RootPath_1,'Visible','off')
|
---|
| 2858 | set(handles.RootFile_1,'Visible','off')
|
---|
| 2859 | set(handles.SubDir_1,'Visible','off');
|
---|
| 2860 | set(handles.FileIndex_1,'Visible','off');
|
---|
| 2861 | set(handles.FileExt_1,'Visible','off');
|
---|
| 2862 | set(handles.Fields_1,'Value',1);%set to blank state
|
---|
| 2863 | set_veltype_display([handles.civ1_1 handles.interp1_1 handles.filter1_1 ...
|
---|
| 2864 | handles.civ2_1 handles.interp2_1 handles.filter2_1],0)
|
---|
| 2865 | if isfield(UvData,'XmlData_1')
|
---|
| 2866 | UvData=rmfield(UvData,'XmlData_1');
|
---|
| 2867 | end
|
---|
| 2868 | set(huvmat,'UserData',UvData);
|
---|
| 2869 | run0_Callback(hObject, eventdata, handles); %run
|
---|
| 2870 | else
|
---|
| 2871 | MenuBrowse_1_Callback(hObject, eventdata, handles)
|
---|
| 2872 | end
|
---|
| 2873 |
|
---|
| 2874 | % %----------------------------------------------
|
---|
| 2875 | % %read the data displayed for the input rootfile windows (new)
|
---|
| 2876 | % %-------------------------------------------------
|
---|
| 2877 | function [FileName,RootPath,FileBase,FileIndices,FileExt,SubDir]=read_file_boxes(handles)
|
---|
| 2878 | RootPath=get(handles.RootPath,'String');
|
---|
| 2879 | FileName=RootPath; %default
|
---|
| 2880 | SubDir=get(handles.SubDir,'String');
|
---|
| 2881 | if ~isempty(SubDir) && ~isequal(SubDir,'')
|
---|
| 2882 | if (isequal(SubDir(1),'/')|| isequal(SubDir(1),'\'))
|
---|
| 2883 | SubDir(1)=[]; %suppress possible / or \ separator
|
---|
| 2884 | end
|
---|
| 2885 | FileName=fullfile(RootPath,SubDir);
|
---|
| 2886 | end
|
---|
| 2887 | RootFile=get(handles.RootFile,'String');
|
---|
| 2888 | if ~isempty(RootFile) && ~isequal(RootFile,'')
|
---|
| 2889 | if (isequal(RootFile(1),'/')|| isequal(RootFile(1),'\'))
|
---|
| 2890 | RootFile(1)=[]; %suppress possible / or \ separator
|
---|
| 2891 | end
|
---|
| 2892 | FileName=fullfile(FileName,RootFile);
|
---|
| 2893 | end
|
---|
| 2894 | FileBase=fullfile(RootPath,RootFile);
|
---|
| 2895 | FileIndices=get(handles.FileIndex,'String');
|
---|
| 2896 | FileExt=get(handles.FileExt,'String');
|
---|
| 2897 | FileName=[FileName FileIndices FileExt];
|
---|
| 2898 |
|
---|
| 2899 | %----------------------------------------------
|
---|
| 2900 | %read the data displayed for the second input rootfile windows
|
---|
| 2901 | %-------------------------------------------------
|
---|
| 2902 | function [FileName_1,RootPath_1,FileBase_1,FileIndices_1,FileExt_1,SubDir_1]=read_file_boxes_1(handles)
|
---|
| 2903 | RootPath_1=get(handles.RootPath_1,'String'); % read the data from the file1_input window
|
---|
| 2904 | if isequal(RootPath_1,'"'),RootPath_1=get(handles.RootPath,'String'); end;
|
---|
| 2905 | FileName_1=RootPath_1; %default
|
---|
| 2906 | SubDir_1=get(handles.SubDir_1,'String');
|
---|
| 2907 | if isequal(SubDir_1,'"')
|
---|
| 2908 | SubDir_1=get(handles.SubDir,'String');
|
---|
| 2909 | end
|
---|
| 2910 | if ~isempty(SubDir_1) && ~isequal(SubDir_1,'')
|
---|
| 2911 | if (isequal(SubDir_1(1),'/')|| isequal(SubDir_1(1),'\'))
|
---|
| 2912 | SubDir_1(1)=[]; %suppress possible / or \ separator
|
---|
| 2913 | end
|
---|
| 2914 | FileName_1=fullfile(RootPath_1,SubDir_1);
|
---|
| 2915 | end
|
---|
| 2916 | RootFile_1=get(handles.RootFile_1,'String');
|
---|
| 2917 | if isequal(RootFile_1,'"'),RootFile_1=get(handles.RootFile,'String'); end;
|
---|
| 2918 | if ~isempty(RootFile_1) && ~isequal(RootFile_1,'')
|
---|
| 2919 | if ~(isequal(RootFile_1(1),'/')|isequal(RootFile_1(1),'\'))
|
---|
| 2920 | RootFile_1(1)=[];%suppress possible / or \ separator
|
---|
| 2921 | end
|
---|
| 2922 | FileName_1=fullfile(FileName_1,RootFile_1);
|
---|
| 2923 | end
|
---|
| 2924 | FileBase_1=fullfile(RootPath_1,RootFile_1);
|
---|
| 2925 | FileIndices_1=get(handles.FileIndex_1,'String');
|
---|
| 2926 | FileExt_1=get(handles.FileExt_1,'String');
|
---|
| 2927 | if isequal(FileExt_1,'"'),FileExt_1=get(handles.FileExt,'String'); end;
|
---|
| 2928 | FileName_1=[FileName_1 FileIndices_1 FileExt_1];
|
---|
| 2929 |
|
---|
| 2930 | %---------------------------------------------------
|
---|
| 2931 | % --- Executes on menu selection Fields
|
---|
| 2932 | function Fields_Callback(hObject, eventdata, handles)
|
---|
| 2933 | %-------------------------------------------------
|
---|
[59] | 2934 |
|
---|
[2] | 2935 | list_fields=get(handles.Fields,'String');% list menu fields
|
---|
| 2936 | index_fields=get(handles.Fields,'Value');% selected string index
|
---|
| 2937 | field= list_fields{index_fields(1)}; % selected string
|
---|
| 2938 | if isequal(field,'get_field...')
|
---|
| 2939 | veltype_handles=[handles.civ1 handles.interp1 handles.filter1 handles.civ2 handles.interp2 handles.filter2];
|
---|
| 2940 | set_veltype_display(veltype_handles,0) % unvisible civ buttons
|
---|
| 2941 | filename=read_file_boxes(handles);
|
---|
| 2942 | hget_field=findobj(allchild(0),'name','get_field');
|
---|
| 2943 | if ~isempty(hget_field)
|
---|
| 2944 | delete(hget_field)
|
---|
| 2945 | end
|
---|
| 2946 | get_field(filename)
|
---|
| 2947 | return %no action
|
---|
| 2948 | end
|
---|
| 2949 | list_fields=get(handles.Fields_1,'String');% list menu fields
|
---|
| 2950 | index_fields=get(handles.Fields_1,'Value');% selected string index
|
---|
| 2951 | field_1= list_fields{index_fields(1)}; % selected string
|
---|
[59] | 2952 | UvData=get(handles.uvmat,'UserData');
|
---|
[2] | 2953 |
|
---|
| 2954 | %read the rootfile input display
|
---|
| 2955 | FileExt=get(handles.FileExt,'String');
|
---|
| 2956 | [P,F,str1,str2,str_a,str_b,E,NomType]=name2display(['xxx' get(handles.FileIndex,'String') FileExt]);
|
---|
| 2957 | NomTypeNew=NomType;%default
|
---|
| 2958 | if isequal(field,'image')
|
---|
| 2959 | % transform netc type to the corresponding image type
|
---|
| 2960 | if isequal(NomType,'_i1-i2_j')||isequal(NomType,'_i_j1-j2')|| isequal(NomType,'#_ab')|| isequal(NomType,'_i1-i2')
|
---|
| 2961 | UvData.SubDir=get(handles.SubDir,'String'); %preserve the subdir in memory
|
---|
[45] | 2962 | if ~isempty(UvData.SubDir) && (isequal(UvData.SubDir(1),'/')||isequal(UvData.SubDir(1),'/'))
|
---|
[2] | 2963 | UvData.SubDir(1)=[];
|
---|
| 2964 | end
|
---|
| 2965 | set(handles.SubDir,'String','')
|
---|
| 2966 | set(handles.FileExt,'String','.png');
|
---|
[45] | 2967 | if isequal(NomType,'_i1-i2_j')||isequal(NomType,'_i_j1-j2')
|
---|
[2] | 2968 | NomTypeNew='_i_j';
|
---|
| 2969 | elseif isequal(NomType,'#_ab')
|
---|
| 2970 | NomTypeNew='#a';
|
---|
| 2971 | elseif isequal(NomType,'_i1-i2')
|
---|
| 2972 | NomTypeNew='_i';
|
---|
| 2973 | end
|
---|
| 2974 | end
|
---|
| 2975 | veltype_handles=[handles.civ1 handles.interp1 handles.filter1 handles.civ2 handles.interp2 handles.filter2];
|
---|
| 2976 | set_veltype_display(veltype_handles,0) % unvisible civ buttons
|
---|
| 2977 | else
|
---|
| 2978 | ext=get(handles.FileExt,'String');
|
---|
| 2979 | if ~isequal(ext,'.nc') %find the new NomType if the previous display was not already a netcdf file
|
---|
| 2980 | MenuBrowse_Callback(hObject, eventdata, handles)
|
---|
| 2981 | end
|
---|
| 2982 | if isequal(field,'vort') || isequal(field,'div') || isequal(field,'strain')
|
---|
| 2983 | set(handles.civ1,'BackgroundColor',[0.702 0.702 0.702]) % put their color to grey
|
---|
| 2984 | set(handles.civ2,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 2985 | set(handles.interp1,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 2986 | set(handles.interp2,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 2987 | elseif isequal(field,'more...');
|
---|
| 2988 | set(handles.civ1,'BackgroundColor',[0.702 0.702 0.702]) % put their color to grey
|
---|
| 2989 | set(handles.civ2,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 2990 | str=calc_field;%get the list of available scalars by the function calc_scal
|
---|
[45] | 2991 | [ind_answer] = listdlg('PromptString','Select a file:',...
|
---|
[2] | 2992 | 'SelectionMode','single',...
|
---|
| 2993 | 'ListString',str);
|
---|
| 2994 | % edit the choice in the field and action menu
|
---|
| 2995 | scalar=cell2mat(str(ind_answer));
|
---|
| 2996 | menu=update_menu(handles.Fields,scalar);
|
---|
| 2997 | menu=[{''};menu];
|
---|
| 2998 | set(handles.Fields_1,'String',menu);% store the selected scalar type
|
---|
| 2999 | end
|
---|
| 3000 | end
|
---|
[45] | 3001 | indices=name_generator('',str2double(str1),str2double(str_a),'',NomTypeNew,1,str2double(str2),str2double(str_b),'');
|
---|
[2] | 3002 | set(handles.FileIndex,'String',indices)
|
---|
| 3003 | set(handles.FileIndex,'UserData',NomTypeNew)
|
---|
| 3004 | %common to Fields_1_Callback
|
---|
[45] | 3005 | if isequal(field,'image')||isequal(field_1,'image')
|
---|
[2] | 3006 | set(handles.npx_title,'Visible','on')% visible npx,pxcm... buttons
|
---|
| 3007 | set(handles.npy_title,'Visible','on')
|
---|
| 3008 | set(handles.npx,'Visible','on')
|
---|
| 3009 | set(handles.npy,'Visible','on')
|
---|
| 3010 | set(handles.fix_pair,'Value',0)
|
---|
| 3011 | else
|
---|
| 3012 | set(handles.npx_title,'Visible','off')% visible npx,pxcm... buttons
|
---|
| 3013 | set(handles.npy_title,'Visible','off')
|
---|
| 3014 | set(handles.npx,'Visible','off')
|
---|
| 3015 | set(handles.npy,'Visible','off')
|
---|
| 3016 | set(handles.fix_pair,'Value',1)
|
---|
| 3017 | end
|
---|
| 3018 | setfield(handles);% update the field structure ('civ1'....)
|
---|
| 3019 |
|
---|
[45] | 3020 | if ~isfield(UvData,'NewSeries')||isequal(UvData.NewSeries,0)
|
---|
[2] | 3021 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3022 | end
|
---|
| 3023 |
|
---|
| 3024 | %---------------------------------------------------
|
---|
| 3025 | % --- Executes on menu selection Fields
|
---|
| 3026 | function Fields_1_Callback(hObject, eventdata, handles)
|
---|
| 3027 | %-------------------------------------------------
|
---|
| 3028 | list_fields=get(handles.Fields,'String');% list menu fields
|
---|
| 3029 | index_fields=get(handles.Fields,'Value');% selected string index
|
---|
| 3030 | field= list_fields{index_fields(1)}; % selected string
|
---|
| 3031 | list_fields=get(handles.Fields_1,'String');% list menu fields
|
---|
| 3032 | index_fields=get(handles.Fields_1,'Value');% selected string index
|
---|
| 3033 | field_1= list_fields{index_fields(1)}; % selected string for the second field
|
---|
| 3034 | if isequal(field_1,'') %remove second field if 'blank' field is selected
|
---|
| 3035 | set(handles.SubField,'Value',0)
|
---|
| 3036 | SubField_Callback(hObject, eventdata, handles)
|
---|
| 3037 | return
|
---|
| 3038 | end
|
---|
[59] | 3039 | UvData=get(handles.uvmat,'UserData');
|
---|
[2] | 3040 |
|
---|
| 3041 | %read the rootfile input display
|
---|
| 3042 | FileExt_prev=get(handles.FileExt_1,'String');
|
---|
| 3043 | if isempty(FileExt_prev)|isequal(FileExt_prev,'')
|
---|
| 3044 | FileExt_1=get(handles.FileExt,'String');
|
---|
| 3045 | else
|
---|
| 3046 | FileExt_1=FileExt_prev;
|
---|
| 3047 | end
|
---|
| 3048 | NomType_1=get(handles.FileIndex_1,'UserData');
|
---|
| 3049 | if isempty(NomType_1)|isequal(NomType_1,'')
|
---|
| 3050 | NomType_1=get(handles.FileIndex,'UserData');
|
---|
| 3051 | end
|
---|
| 3052 | NomTypeNew=NomType_1;%default
|
---|
| 3053 |
|
---|
| 3054 | set(handles.SubField,'Value',1)%introduce second field
|
---|
| 3055 | if isfield(UvData,'XmlData')
|
---|
| 3056 | UvData.XmlData_1=UvData.XmlData;
|
---|
| 3057 | end
|
---|
| 3058 | set(handles.FileIndex_1,'Visible','on')
|
---|
| 3059 | set(handles.FileExt_1,'Visible','on')
|
---|
| 3060 | RootPath_1=get(handles.RootPath_1,'String');
|
---|
| 3061 | RootFile_1=get(handles.RootFile_1,'String');
|
---|
| 3062 | if isempty(RootPath_1)|isequal(RootPath_1,'')
|
---|
| 3063 | set(handles.RootPath_1,'String','"')
|
---|
| 3064 | end
|
---|
| 3065 | if isempty(RootFile_1) | isequal(RootFile_1,'')
|
---|
| 3066 | set(handles.RootFile_1,'String','"')
|
---|
| 3067 | end
|
---|
| 3068 | if ~isempty(RootFile_1)&(isequal(RootFile_1(1),'/')|isequal(RootFile_1(1),'\'))
|
---|
| 3069 | RootFile_1(1)=[];
|
---|
| 3070 | end
|
---|
| 3071 |
|
---|
| 3072 | if isequal(field_1,'get_field...')
|
---|
| 3073 | veltype_handles=[handles.civ1 handles.interp1 handles.filter1 handles.civ2 handles.interp2 handles.filter2];
|
---|
| 3074 | set_veltype_display(veltype_handles,0) % unvisible civ buttons
|
---|
| 3075 | filename=read_file_boxes_1(handles);
|
---|
| 3076 | hget_field=findobj(allchild(0),'name','get_field_1');
|
---|
| 3077 | if ~isempty(hget_field)
|
---|
| 3078 | delete(hget_field)
|
---|
| 3079 | end
|
---|
| 3080 | hget_field=get_field(filename);
|
---|
| 3081 | set(hget_field,'name','get_field_1')
|
---|
| 3082 | return %no action
|
---|
| 3083 | end
|
---|
| 3084 | if isequal(field_1,'image')
|
---|
| 3085 | % transform netc type to the corresponding image type
|
---|
| 3086 | set(handles.FileExt_1,'String','.png');
|
---|
| 3087 | if isequal(NomType_1,'_i1-i2_j')|isequal(NomType_1,'_i_j1-j2')| isequal(NomType_1,'#_ab')| isequal(NomType_1,'_i1-i2')
|
---|
| 3088 | UvData.SubDir_1=get(handles.SubDir_1,'String'); %preserve the subdir in memory
|
---|
| 3089 | set(handles.SubDir_1,'String','')
|
---|
| 3090 | % set(handles.FileExt_1,'String','.png');
|
---|
| 3091 | if isequal(NomType_1,'_i1-i2_j')|isequal(NomType_1,'_i_j1-j2')
|
---|
| 3092 | NomTypeNew='_i_j';
|
---|
| 3093 | elseif isequal(NomType_1,'#_ab')
|
---|
| 3094 | NomTypeNew='#a';
|
---|
| 3095 | elseif isequal(NomType_1,'_i1-i2')
|
---|
| 3096 | NomTypeNew='_i';
|
---|
| 3097 | end
|
---|
| 3098 | end
|
---|
| 3099 | veltype_handles=[handles.civ1_1 handles.interp1_1 handles.filter1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1];
|
---|
| 3100 | set_veltype_display(veltype_handles,0) % unvisible civ buttons
|
---|
| 3101 | else
|
---|
| 3102 | set(handles.SubDir_1,'Visible','on')
|
---|
| 3103 | if ~isequal(FileExt_prev,'.nc') %find the new NomType if the previous display was not already a netcdf file
|
---|
| 3104 | veltype_handles=[handles.civ1_1 handles.interp1_1 handles.filter1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1];
|
---|
| 3105 | set_veltype_display(veltype_handles,6); % make all civ buttons visible
|
---|
| 3106 | RootPath_1=get(handles.RootPath_1,'String');
|
---|
| 3107 | RootFile_1=get(handles.RootFile_1,'String');
|
---|
| 3108 | if isempty(RootPath_1)|isequal(RootPath_1,'')
|
---|
| 3109 | set(handles.RootPath_1,'String','"')
|
---|
| 3110 | end
|
---|
| 3111 | if isempty(RootFile_1) | isequal(RootFile_1,'')
|
---|
| 3112 | set(handles.RootFile_1,'String','"')
|
---|
| 3113 | end
|
---|
| 3114 | if ~isempty(RootFile_1)&(isequal(RootFile_1(1),'/')|isequal(RootFile_1(1),'\'))
|
---|
| 3115 | RootFile_1(1)=[];
|
---|
| 3116 | end
|
---|
| 3117 | filebase_1=fullfile(RootPath_1,RootFile_1);
|
---|
| 3118 | SubDir_1=get(handles.SubDir,'String');
|
---|
| 3119 | if isempty(SubDir_1)|isequal(SubDir_1,'')
|
---|
| 3120 | if isfield(UvData,'SubDir_1')
|
---|
| 3121 | SubDir_1=UvData.SubDir_1;%retrieve previous subdir
|
---|
| 3122 | else
|
---|
| 3123 | SubDir_1='?';
|
---|
| 3124 | end
|
---|
| 3125 | end
|
---|
| 3126 | if isequal(NomType_1,'#_ab')|isequal(NomType_1,'_i1-i2_j')|isequal(NomType_1,'_i_j1-j2')|isequal(NomType_1,'_i1-i2')
|
---|
| 3127 | NomTypeNew=NomType_1;
|
---|
| 3128 | elseif isequal(NomType_1,'#a')
|
---|
| 3129 | [filename,idetect,n1,na,n2,nb,SubDir_1]=name_generator(filebase_1, str2num(str1),str2num(str_a),'.nc','#_ab',0,[],[],SubDir_1);
|
---|
| 3130 | NomTypeNew='#_ab';
|
---|
| 3131 | elseif isequal(NomType_1,'_i_j')
|
---|
| 3132 | [filename,idetect,n1,na,n2,nb,SubDir_1]=name_generator(filebase_1,str2num(str1),str2num(str_a),'.nc','_i1-i2_j',0,str2num(str1),[],SubDir_1);
|
---|
| 3133 | if idetect==1
|
---|
| 3134 | NomTypeNew='_i1-i2_j';
|
---|
| 3135 | else
|
---|
| 3136 | NomTypeNew='_i_j1-j2';
|
---|
| 3137 | end
|
---|
| 3138 | else %for instance avi files or any ima_num series
|
---|
| 3139 | [filename,idetect,n1,na,n2,nb,SubDir_1]=name_generator(filebase_1,str2num(str1),str2num(str_a),'.nc','_i1-i2',0,str2num(str1),[],SubDir_1);
|
---|
| 3140 | NomTypeNew='_i1-i2';
|
---|
| 3141 | end
|
---|
| 3142 | [Path,Name]=fileparts(filebase_1);
|
---|
| 3143 | set(handles.FileExt_1,'String','.nc');
|
---|
| 3144 | if ~isempty(SubDir_1) & ~isequal(SubDir_1,'''')& ~isequal(SubDir_1,'"')
|
---|
| 3145 | SubDir_1=['/' SubDir_1];
|
---|
| 3146 | end
|
---|
| 3147 | set(handles.SubDir_1,'String',SubDir_1);
|
---|
| 3148 | end
|
---|
| 3149 | if isequal(field,'vort') | isequal(field,'div') | isequal(field,'strain')
|
---|
| 3150 | set(handles.civ1_1,'BackgroundColor',[0.702 0.702 0.702]) % put their color to grey
|
---|
| 3151 | set(handles.civ2_1,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 3152 | set(handles.interp1_1,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 3153 | set(handles.interp2_1,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 3154 | elseif isequal(field_1,'more...'); %add new item to the menu
|
---|
| 3155 | set(handles.civ1_1,'BackgroundColor',[0.702 0.702 0.702]) % put their color to grey
|
---|
| 3156 | set(handles.civ2_1,'BackgroundColor',[0.702 0.702 0.702])
|
---|
| 3157 | str=calc_field;%get the list of available scalars by the function calc_scal
|
---|
| 3158 | [ind_answer,v] = listdlg('PromptString','Select a file:',...
|
---|
| 3159 | 'SelectionMode','single',...
|
---|
| 3160 | 'ListString',str);
|
---|
| 3161 | % edit the choice in the field and action menu
|
---|
| 3162 | scalar=cell2mat(str(ind_answer));
|
---|
| 3163 | menu=update_menu(handles.Fields_1,scalar);
|
---|
| 3164 | set(handles.Fields_1,'String',menu);% store the selected scalar type
|
---|
| 3165 | end
|
---|
| 3166 | end
|
---|
| 3167 | str1=get(handles.i1,'String');
|
---|
| 3168 | str2=get(handles.i2,'String');
|
---|
| 3169 | str_a=get(handles.j1,'String');
|
---|
| 3170 | str_b=get(handles.j2,'String');
|
---|
| 3171 | indices=name_generator('',str2num(str1),stra2num(str_a),'',NomTypeNew,1,str2num(str2),stra2num(str_b),'');
|
---|
| 3172 | set(handles.FileIndex_1,'String',indices)
|
---|
| 3173 | set(handles.FileIndex_1,'UserData',NomTypeNew)
|
---|
| 3174 |
|
---|
| 3175 | %common to Fields_Callback
|
---|
| 3176 | if isequal(field,'image')|isequal(field_1,'image')
|
---|
| 3177 | set(handles.npx_title,'Visible','on')% visible npx,pxcm... buttons
|
---|
| 3178 | set(handles.npy_title,'Visible','on')
|
---|
| 3179 | set(handles.npx,'Visible','on')
|
---|
| 3180 | set(handles.npy,'Visible','on')
|
---|
| 3181 | set(handles.fix_pair,'Value',0)
|
---|
| 3182 | else
|
---|
| 3183 | set(handles.npx_title,'Visible','off')% visible npx,pxcm... buttons
|
---|
| 3184 | set(handles.npy_title,'Visible','off')
|
---|
| 3185 | set(handles.npx,'Visible','off')
|
---|
| 3186 | set(handles.npy,'Visible','off')
|
---|
| 3187 | set(handles.fix_pair,'Value',1)
|
---|
| 3188 | end
|
---|
| 3189 | if isequal(field,'velocity')|isequal(field_1,'velocity');
|
---|
| 3190 | state_vect='on';
|
---|
| 3191 | else
|
---|
| 3192 | state_vect='off';
|
---|
| 3193 | end
|
---|
| 3194 | if ~isequal(field,'velocity')|(~isequal(field_1,'velocity')&~isequal(field_1,''));
|
---|
| 3195 | state_scal='on';
|
---|
| 3196 | else
|
---|
| 3197 | state_scal='off';
|
---|
| 3198 | end
|
---|
[59] | 3199 | set(handles.uvmat,'UserData',UvData)
|
---|
[2] | 3200 | setfield(handles);% update the field structure ('civ1'....)
|
---|
| 3201 | if ~isfield(UvData,'NewSeries')|isequal(UvData.NewSeries,0)
|
---|
| 3202 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3203 | end
|
---|
| 3204 |
|
---|
[57] | 3205 | %------------------------------------------------------------------------
|
---|
| 3206 | % --- set the visibility of relevant velocity type menus:
|
---|
| 3207 | function set_veltype_display(handles,Civ)
|
---|
| 3208 | %------------------------------------------------------------------------
|
---|
[2] | 3209 | %Civ=0; all states 'off'
|
---|
| 3210 | %Civ=6; all states 'on'
|
---|
| 3211 | if isequal(Civ,0)
|
---|
| 3212 | imax=0;
|
---|
| 3213 | % set(handles(1),'Visible','on') % unvisible civ buttons
|
---|
| 3214 | % else
|
---|
| 3215 | % set(handles(1),'String','civ1')
|
---|
| 3216 | % end
|
---|
[57] | 3217 | elseif isequal(Civ,1) || isequal(Civ,2)
|
---|
[2] | 3218 | imax=1;
|
---|
[57] | 3219 | elseif isequal(Civ,3)
|
---|
[2] | 3220 | imax=3;
|
---|
[57] | 3221 | elseif isequal(Civ,4) || isequal(Civ,5)
|
---|
[2] | 3222 | imax=4;
|
---|
[57] | 3223 | elseif isequal(Civ,6) %patch2
|
---|
[2] | 3224 | imax=6;
|
---|
| 3225 | end
|
---|
| 3226 | for ibutton=1:imax;
|
---|
| 3227 | set(handles(ibutton),'Visible','on') % unvisible civ buttons
|
---|
| 3228 | end
|
---|
| 3229 | % for ibutton=max(imax+1,2):6;
|
---|
| 3230 | for ibutton=imax+1:6;
|
---|
| 3231 | set(handles(ibutton),'Visible','off') % unvisible civ buttons
|
---|
| 3232 | set(handles(ibutton),'Value',0)%unactivate unvisible buttons
|
---|
| 3233 | end
|
---|
| 3234 |
|
---|
| 3235 | %-------------------------------------------------------------------
|
---|
| 3236 | % --- Executes on button press in civ1.
|
---|
| 3237 | function civ1_Callback(hObject, eventdata, handles)
|
---|
| 3238 | %-------------------------------------------------------------------
|
---|
| 3239 | if get(handles.civ1,'Value')==1
|
---|
| 3240 | reset_vel_type([handles.interp1 handles.civ2 handles.filter1 handles.interp1 handles.interp2 handles.filter2],handles.civ1)
|
---|
| 3241 | else
|
---|
| 3242 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2 handles.filter2])
|
---|
| 3243 | end
|
---|
| 3244 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3245 |
|
---|
| 3246 | %-------------------------------------------------------------------
|
---|
| 3247 | % --- Executes on button press in interp1.
|
---|
| 3248 | function interp1_Callback(hObject, eventdata, handles)
|
---|
| 3249 | %-------------------------------------------------------------------
|
---|
| 3250 | if get(handles.interp1,'Value')==1
|
---|
| 3251 | reset_vel_type([handles.civ1 handles.civ2 handles.filter1 handles.interp2 handles.filter2],handles.interp1)
|
---|
| 3252 | else
|
---|
| 3253 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2 handles.filter2])
|
---|
| 3254 | end
|
---|
| 3255 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3256 |
|
---|
| 3257 | %-------------------------------------------------------------------
|
---|
| 3258 | % --- Executes on button press in filter1.
|
---|
| 3259 | function filter1_Callback(hObject, eventdata, handles)
|
---|
| 3260 | %-------------------------------------------------------------------
|
---|
| 3261 | if get(handles.filter1,'Value')==1
|
---|
| 3262 | reset_vel_type([handles.civ1 handles.civ2 handles.interp1 handles.interp2 handles.filter2],handles.filter1)
|
---|
| 3263 | else
|
---|
| 3264 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2 handles.filter2])
|
---|
| 3265 | end
|
---|
| 3266 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3267 |
|
---|
| 3268 | %-------------------------------------------------------------------
|
---|
| 3269 | % --- Executes on button press in civ2.
|
---|
| 3270 | function civ2_Callback(hObject, eventdata, handles)
|
---|
| 3271 | %-------------------------------------------------------------------
|
---|
| 3272 | if get(handles.civ2,'Value')==1
|
---|
| 3273 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.interp2 handles.filter2],handles.civ2)
|
---|
| 3274 | else
|
---|
| 3275 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2 handles.filter2])
|
---|
| 3276 | end
|
---|
| 3277 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3278 |
|
---|
| 3279 | %-----------------------------------------
|
---|
| 3280 | % --- Executes on button press in interp2.
|
---|
| 3281 | %-------------------------------------------
|
---|
| 3282 | function interp2_Callback(hObject, eventdata, handles)
|
---|
| 3283 | if get(handles.interp2,'Value')==1
|
---|
| 3284 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.filter2],handles.interp2)
|
---|
| 3285 | else
|
---|
| 3286 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2 handles.filter2])
|
---|
| 3287 | end
|
---|
| 3288 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3289 | %---------------------------------------------
|
---|
| 3290 | % --- Executes on button press in filter2.
|
---|
| 3291 | %-------------------------------------------
|
---|
| 3292 | function filter2_Callback(hObject, eventdata, handles)
|
---|
| 3293 | if get(handles.filter2,'Value')==1
|
---|
| 3294 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2],handles.filter2)
|
---|
| 3295 | else
|
---|
| 3296 | reset_vel_type([handles.civ1 handles.filter1 handles.interp1 handles.civ2 handles.interp2 handles.filter2])
|
---|
| 3297 | end
|
---|
| 3298 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3299 |
|
---|
| 3300 | %---------------------------------------------
|
---|
| 3301 | function civ1_1_Callback(hObject, eventdata, handles)
|
---|
| 3302 | %---------------------------------------------
|
---|
| 3303 | if get(handles.civ1_1,'Value')==1
|
---|
| 3304 | reset_vel_type([handles.interp1_1 handles.civ2_1 handles.filter1_1 handles.interp1_1 handles.interp2_1 handles.filter2_1],handles.civ1_1)
|
---|
| 3305 | else
|
---|
| 3306 | reset_vel_type([handles.civ1_1 handles.filter1_1 handles.interp1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1])
|
---|
| 3307 | end
|
---|
| 3308 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3309 |
|
---|
| 3310 | %--------------------------------------------
|
---|
| 3311 | function interp1_1_Callback(hObject, eventdata, handles)
|
---|
| 3312 | %--------------------------------------------
|
---|
| 3313 | if get(handles.interp1_1,'Value')==1
|
---|
| 3314 | reset_vel_type([handles.civ1_1 handles.civ2_1 handles.filter1_1 handles.interp2_1 handles.filter2_1],handles.interp1_1)
|
---|
| 3315 | else
|
---|
| 3316 | reset_vel_type([handles.civ1_1 handles.filter1_1 handles.interp1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1])
|
---|
| 3317 | end
|
---|
| 3318 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3319 |
|
---|
| 3320 | %--------------------------------------------
|
---|
| 3321 | function filter1_1_Callback(hObject, eventdata, handles)
|
---|
| 3322 | %--------------------------------------------
|
---|
| 3323 | if get(handles.filter1_1,'Value')==1
|
---|
| 3324 | reset_vel_type([handles.interp1_1 handles.civ2_1 handles.interp1_1 handles.interp2_1 handles.filter2_1],handles.filter1_1)
|
---|
| 3325 | else
|
---|
| 3326 | reset_vel_type([handles.civ1_1 handles.filter1_1 handles.interp1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1])
|
---|
| 3327 | end
|
---|
| 3328 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3329 |
|
---|
| 3330 | %--------------------------------------------
|
---|
| 3331 | function civ2_1_Callback(hObject, eventdata, handles)
|
---|
| 3332 | %--------------------------------------------
|
---|
| 3333 | if get(handles.civ2_1,'Value')==1
|
---|
| 3334 | reset_vel_type([handles.civ1_1 handles.interp1_1 handles.filter1_1 handles.interp2_1 handles.filter2_1],handles.civ2_1)
|
---|
| 3335 | else
|
---|
| 3336 | reset_vel_type([handles.civ1_1 handles.filter1_1 handles.interp1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1])
|
---|
| 3337 | end
|
---|
| 3338 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3339 |
|
---|
| 3340 | %--------------------------------------------
|
---|
| 3341 | function interp2_1_Callback(hObject, eventdata, handles)
|
---|
| 3342 | %--------------------------------------------
|
---|
| 3343 | if get(handles.interp2_1,'Value')==1
|
---|
| 3344 | reset_vel_type([handles.civ1_1 handles.civ2_1 handles.filter1_1 handles.interp1_1 handles.filter2_1],handles.interp2_1)
|
---|
| 3345 | else
|
---|
| 3346 | reset_vel_type([handles.civ1_1 handles.filter1_1 handles.interp1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1])
|
---|
| 3347 | end
|
---|
| 3348 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3349 |
|
---|
| 3350 | %--------------------------------------------
|
---|
| 3351 | function filter2_1_Callback(hObject, eventdata, handles)
|
---|
| 3352 | %--------------------------------------------
|
---|
| 3353 | if get(handles.filter2_1,'Value')==1
|
---|
| 3354 | reset_vel_type([handles.civ1_1 handles.interp1_1 handles.civ2_1 handles.filter1_1 handles.interp1_1 handles.interp2_1],handles.filter2_1)
|
---|
| 3355 | else
|
---|
| 3356 | reset_vel_type([handles.civ1_1 handles.filter1_1 handles.interp1_1 handles.civ2_1 handles.interp2_1 handles.filter2_1])
|
---|
| 3357 | end
|
---|
| 3358 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3359 |
|
---|
| 3360 | %-----------------------------------------------
|
---|
| 3361 | % --- reset civ buttons
|
---|
| 3362 | function reset_vel_type(handles_civ0,handle1)
|
---|
| 3363 | for ibutton=1:length(handles_civ0)
|
---|
| 3364 | set(handles_civ0(ibutton),'BackgroundColor',[0.831 0.816 0.784])
|
---|
| 3365 | set(handles_civ0(ibutton),'Value',0)
|
---|
| 3366 | end
|
---|
| 3367 | if exist('handle1','var')%handles of selected button
|
---|
| 3368 | set(handle1,'BackgroundColor',[1 1 0])
|
---|
| 3369 | end
|
---|
| 3370 |
|
---|
| 3371 | %------------------------------------------------
|
---|
| 3372 | function create_Callback(hObject,eventdata,handles)
|
---|
| 3373 | %------------------------------------------------
|
---|
| 3374 | if ishandle(handles.UVMAT_title)
|
---|
| 3375 | delete(handles.UVMAT_title)
|
---|
| 3376 | end
|
---|
| 3377 | huvmat=get(handles.create,'parent');
|
---|
| 3378 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface (handles huvmat)
|
---|
| 3379 | if isequal(get(handles.create,'Value'),1)
|
---|
| 3380 | set(handles.zoom,'Value',0)
|
---|
| 3381 | zoom_Callback(hObject, eventdata, handles)
|
---|
| 3382 | set(handles.create,'BackgroundColor',[1 1 0]) %visualise in yellow
|
---|
| 3383 | set(handles.edit_vect,'Value',0)
|
---|
| 3384 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3385 | set(handles.edit,'Value',0)
|
---|
| 3386 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3387 | list_object=get(handles.list_object,'String');
|
---|
| 3388 | if ~isempty(list_object)
|
---|
| 3389 | set(handles.list_object,'Value',length(list_object))
|
---|
| 3390 | end
|
---|
| 3391 | MouseAction='create_object';
|
---|
| 3392 | hset_object=findobj(allchild(0),'Name','set_object');
|
---|
| 3393 | uistack(hset_object,'top')
|
---|
| 3394 | else
|
---|
| 3395 | set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 3396 | set(handles.edit,'Value',1)
|
---|
| 3397 | set(handles.edit,'BackgroundColor',[1 1 0])
|
---|
| 3398 | MouseAction='none';
|
---|
| 3399 | end
|
---|
| 3400 |
|
---|
| 3401 | UvData.MouseAction=MouseAction;
|
---|
| 3402 | set(huvmat,'UserData',UvData);
|
---|
| 3403 |
|
---|
| 3404 | %------------------------------------------------
|
---|
| 3405 | function POINTS_Callback(hObject,eventdata,handles)
|
---|
| 3406 | %------------------------------------------------
|
---|
| 3407 | if ishandle(handles.UVMAT_title)
|
---|
| 3408 | delete(handles.UVMAT_title)
|
---|
| 3409 | end
|
---|
| 3410 | huvmat=get(handles.create,'parent');
|
---|
| 3411 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface (handles huvmat)
|
---|
| 3412 | if isequal(get(handles.create,'Value'),1)
|
---|
| 3413 | set(handles.zoom,'Value',0)
|
---|
| 3414 | zoom_Callback(hObject, eventdata, handles)
|
---|
| 3415 | set(handles.edit_vect,'Value',0)
|
---|
| 3416 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3417 | set(handles.edit,'Value',0)
|
---|
| 3418 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3419 | %set(handles.grid,'Value',0)
|
---|
| 3420 | %set(handles.grid,'BackgroundColor',[0 1 0])
|
---|
| 3421 | % initiate set_object GUI
|
---|
| 3422 | data.TITLE='POINTS';
|
---|
| 3423 | if isfield(UvData,'CoordType')
|
---|
| 3424 | data.CoordType=UvData.CoordType;
|
---|
| 3425 | end
|
---|
| 3426 | if isfield(UvData,'Mesh')&~isempty(UvData.Mesh)
|
---|
| 3427 | data.RangeY=UvData.Mesh;
|
---|
| 3428 | elseif isfield(UvData,'AX')&isfield(UvData,'AY')& isfield(UvData,'A')%only image
|
---|
| 3429 | np=size(UvData.Field.A);
|
---|
| 3430 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/np(2);
|
---|
| 3431 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/np(1);
|
---|
| 3432 | data.RangeY=max(meshx,meshy);
|
---|
| 3433 | data.DX=max(meshx,meshy);
|
---|
| 3434 | end
|
---|
| 3435 | data.Coord=[0 0 0]; %default
|
---|
| 3436 | data.ParentButton=handles.create;
|
---|
| 3437 | PlotHandles=get_plot_handles(handles);%get the handles of the graphic objects setting the plotting parameters
|
---|
| 3438 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface
|
---|
| 3439 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 3440 | pos_uvmat=get(huvmat,'Position');
|
---|
| 3441 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 3442 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 3443 | set(hset_object,'Position',pos_set_object)
|
---|
| 3444 | end
|
---|
| 3445 | %set(hset_object,'Position',[pos_uvmat(1) pos_uvmat(2)-0.05*pos_uvmat(4) 0.2*pos_uvmat(3) 0.5*pos_uvmat(4)]);
|
---|
| 3446 | list_object=get(handles.list_object,'String');
|
---|
| 3447 | if ~isempty(list_object)
|
---|
| 3448 | set(handles.list_object,'Value',length(list_object))
|
---|
| 3449 | end
|
---|
| 3450 | MouseAction='create_object';
|
---|
| 3451 | %UvData.ZoomOn=0;
|
---|
| 3452 | else
|
---|
| 3453 | set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 3454 | set(handles.edit,'Value',1)
|
---|
| 3455 | set(handles.edit,'BackgroundColor',[1 1 0])
|
---|
| 3456 | MouseAction='none';
|
---|
| 3457 | end
|
---|
| 3458 |
|
---|
| 3459 | UvData.MouseAction=MouseAction;
|
---|
| 3460 | set(huvmat,'UserData',UvData);
|
---|
| 3461 |
|
---|
| 3462 | %-----------------------------------------------------------
|
---|
| 3463 | function LINE_Callback(hObject, eventdata, handles)
|
---|
| 3464 | %-------------------------------------------------
|
---|
| 3465 | if ishandle(handles.UVMAT_title)
|
---|
| 3466 | delete(handles.UVMAT_title)
|
---|
| 3467 | end
|
---|
[40] | 3468 | % handles.uvmat
|
---|
[2] | 3469 | huvmat=get(handles.create,'parent');
|
---|
| 3470 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
[40] | 3471 | set(handles.zoom,'Value',0)
|
---|
| 3472 | zoom_Callback(hObject, eventdata, handles)
|
---|
| 3473 | set(handles.edit_vect,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3474 | set(handles.edit_vect,'Value',0)
|
---|
| 3475 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3476 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3477 | set(handles.edit,'Value',0)
|
---|
| 3478 | set(handles.list_object,'Value',1);
|
---|
| 3479 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3480 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3481 | set(handles.cal,'Value',0)
|
---|
| 3482 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
[2] | 3483 | % initiate the set_object GUI
|
---|
[40] | 3484 | data.TITLE='LINE';
|
---|
| 3485 | if isfield(UvData,'CoordType')
|
---|
| 3486 | data.CoordType=UvData.CoordType;
|
---|
| 3487 | end
|
---|
| 3488 | if isfield(UvData,'Mesh')&~isempty(UvData.Mesh)
|
---|
| 3489 | data.RangeX=UvData.Mesh;
|
---|
| 3490 | data.RangeY=UvData.Mesh;
|
---|
| 3491 | data.DX=UvData.Mesh;
|
---|
| 3492 | data.DY=UvData.Mesh;
|
---|
| 3493 | elseif isfield(UvData.Field,'AX')&isfield(UvData.Field,'AY')& isfield(UvData.Field,'A')%only image
|
---|
| 3494 | np=size(UvData.Field.A);
|
---|
| 3495 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/np(2);
|
---|
| 3496 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/np(1);
|
---|
| 3497 | data.RangeY=max(meshx,meshy);
|
---|
| 3498 | data.RangeX=max(meshx,meshy);
|
---|
| 3499 | data.DX=max(meshx,meshy);
|
---|
| 3500 | end
|
---|
| 3501 | if isfield(data,'DX')
|
---|
| 3502 | data.Coord=[[0 0 0];[data.DX 0 0]]; %default
|
---|
| 3503 | else
|
---|
| 3504 | data.Coord=[[0 0 0];[1 0 0]]; %default
|
---|
| 3505 | end
|
---|
| 3506 | data.ParentButton=handles.create;
|
---|
| 3507 | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters
|
---|
| 3508 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface with action on haxes,
|
---|
| 3509 | % associate the set_edit interface handle to the plotting axes
|
---|
| 3510 | pos_uvmat=get(huvmat,'Position');
|
---|
| 3511 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 3512 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 3513 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 3514 | set(hset_object,'Position',pos_set_object)
|
---|
| 3515 | end
|
---|
| 3516 | list_object=get(handles.list_object,'String');
|
---|
| 3517 | if ~isempty(list_object)
|
---|
| 3518 | set(handles.list_object,'Value',length(list_object))
|
---|
| 3519 | end
|
---|
| 3520 | MouseAction='create_object';
|
---|
[2] | 3521 | UvData.MouseAction=MouseAction;
|
---|
| 3522 | set(huvmat,'UserData',UvData)
|
---|
| 3523 |
|
---|
| 3524 | %-----------------------------------------------------------
|
---|
| 3525 | function PATCH_Callback(hObject, eventdata, handles)
|
---|
| 3526 | %-----------------------------------------------------------
|
---|
| 3527 | if ishandle(handles.UVMAT_title)
|
---|
| 3528 | delete(handles.UVMAT_title)
|
---|
| 3529 | end
|
---|
| 3530 | huvmat=get(handles.create,'parent');
|
---|
| 3531 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 3532 | % if isequal(get(handles.PATCH,'Value'),1)
|
---|
| 3533 | set(handles.zoom,'Value',0)
|
---|
| 3534 | set(handles.zoom,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3535 | % set(handles.create,'Value',0)%suppress the other options if LINE is chosen
|
---|
| 3536 | % set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 3537 | % set(handles.LINE,'Value',0)
|
---|
| 3538 | % set(handles.LINE,'BackgroundColor',[0 1 0])
|
---|
| 3539 | % set(handles.PATCH,'Value',1)
|
---|
| 3540 | % set(handles.PATCH,'BackgroundColor',[1 1 0])
|
---|
| 3541 | % set(handles.PLANE,'Value',0)
|
---|
| 3542 | % set(handles.PLANE,'BackgroundColor',[0 1 0])%put activated buttons to yellow
|
---|
| 3543 | % set(handles.VOLUME,'Value',0)
|
---|
| 3544 | % set(handles.VOLUME,'BackgroundColor',[0 1 0])
|
---|
| 3545 | %set(handles.makemask,'Value',0)
|
---|
| 3546 | %makemask_Callback(hObject, eventdata, handles)
|
---|
| 3547 | set(handles.edit_vect,'Value',0)
|
---|
| 3548 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3549 | set(handles.edit,'Value',0)
|
---|
| 3550 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3551 | set(handles.edit_vect,'Value',0)
|
---|
| 3552 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3553 | set(handles.cal,'Value',0)
|
---|
| 3554 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 3555 | %set(handles.grid,'Value',0)
|
---|
| 3556 | %set(handles.grid,'BackgroundColor',[0 1 0])
|
---|
| 3557 | %initiate set_object GUI
|
---|
| 3558 | data.TITLE='PATCH';
|
---|
| 3559 | if isfield(UvData,'CoordType')
|
---|
| 3560 | data.CoordType=UvData.CoordType;
|
---|
| 3561 | end
|
---|
| 3562 | if isfield(UvData,'Mesh')&~isempty(UvData.Mesh)
|
---|
| 3563 | data.YMax=UvData.Mesh;
|
---|
| 3564 | elseif isfield(UvData.Field,'AX')&isfield(UvData.Field,'AY')& isfield(UvData.Field,'A')%only image
|
---|
| 3565 | np=size(UvData.Field.A);
|
---|
| 3566 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/(np(2)-1);
|
---|
| 3567 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/(np(1)-1);
|
---|
| 3568 | data.YMax=max(meshx,meshy);
|
---|
| 3569 | data.DX=max(meshx,meshy);
|
---|
| 3570 | end
|
---|
| 3571 | data.Coord=[0 0 0]; %default
|
---|
| 3572 | data.ParentButton=handles.create;
|
---|
| 3573 | PlotHandles=get_plot_handles(handles);%get the handles of the graphic objects setting the plotting parameters
|
---|
| 3574 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface
|
---|
| 3575 | pos_uvmat=get(huvmat,'Position');
|
---|
| 3576 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 3577 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 3578 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 3579 | set(hset_object,'Position',pos_set_object)
|
---|
| 3580 | end
|
---|
| 3581 | list_object=get(handles.list_object,'String');
|
---|
| 3582 | if ~isempty(list_object)
|
---|
| 3583 | set(handles.list_object,'Value',length(list_object))
|
---|
| 3584 | end
|
---|
| 3585 | UvData.MouseAction='create_object';
|
---|
| 3586 | set(huvmat,'UserData',UvData);
|
---|
| 3587 | %-------------------------------------------------------
|
---|
| 3588 | function PLANE_Callback(hObject, eventdata, handles)
|
---|
| 3589 | %-------------------------------------------------------
|
---|
| 3590 | if ishandle(handles.UVMAT_title)
|
---|
| 3591 | delete(handles.UVMAT_title)
|
---|
| 3592 | end
|
---|
| 3593 | huvmat=get(handles.create,'parent');
|
---|
| 3594 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 3595 | set(handles.zoom,'Value',0)
|
---|
| 3596 | set(handles.zoom,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3597 | set(handles.edit_vect,'Value',0)
|
---|
| 3598 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3599 | set(handles.edit,'Value',0)
|
---|
| 3600 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3601 | set(handles.cal,'Value',0)
|
---|
| 3602 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 3603 | %set(handles.grid,'Value',0)
|
---|
| 3604 | %set(handles.grid,'BackgroundColor',[0 1 0])
|
---|
| 3605 | %initiate set_object GUI
|
---|
| 3606 | data.TITLE='PLANE';
|
---|
| 3607 | if isfield(UvData,'CoordType')
|
---|
| 3608 | data.CoordType=UvData.CoordType;
|
---|
| 3609 | end
|
---|
| 3610 | %Si 3D data.nbdim=3;
|
---|
| 3611 | %Si 2D
|
---|
| 3612 | if isfield(UvData,'Mesh')&~isempty(UvData.Mesh)
|
---|
| 3613 | data.ZMax=UvData.Mesh;
|
---|
| 3614 | data.DX=UvData.Mesh;
|
---|
| 3615 | data.DY=UvData.Mesh;
|
---|
| 3616 | elseif isfield(UvData.Field,'AX')&isfield(UvData.Field,'AY')& isfield(UvData.Field,'A')%only image
|
---|
| 3617 | np=size(UvData.Field.A);
|
---|
| 3618 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/(np(2)-1);
|
---|
| 3619 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/(np(1)-1);
|
---|
| 3620 | data.DX=max(meshx,meshy);
|
---|
| 3621 | end
|
---|
| 3622 | if isfield(UvData,'DX')
|
---|
| 3623 | data.DX=UvData.DX;
|
---|
| 3624 | end
|
---|
| 3625 | if isfield(UvData,'DY')
|
---|
| 3626 | data.DY=UvData.DY;
|
---|
| 3627 | elseif isfield(UvData,'Mesh')
|
---|
| 3628 | data.DY=UvData.Mesh;
|
---|
| 3629 | end
|
---|
| 3630 | if isfield(UvData.Field,'X')& isfield(UvData.Field,'Y')
|
---|
| 3631 | data.Coord=[0 0 0];
|
---|
| 3632 | data.Style='plane';
|
---|
| 3633 | data.Phi=0;
|
---|
| 3634 | data.IndexObj=1; %act on the first reference plane by default
|
---|
| 3635 | haxes= handles.axes3;%GENERALISER
|
---|
| 3636 | plot_object(data,[],haxes,'m'); %plot the axes of the default plane
|
---|
| 3637 | end
|
---|
| 3638 | data.ParentButton=handles.create;
|
---|
| 3639 | PlotHandles=get_plot_handles(handles);%get the handles of the graphic objects setting the plotting parameters
|
---|
| 3640 | ZBounds=0; % default
|
---|
| 3641 | if isfield(UvData,'ZMin') && isfield(UvData,'ZMax')
|
---|
| 3642 | ZBounds(1)=UvData.ZMin; %minimum for the Z slider
|
---|
| 3643 | ZBounds(2)=UvData.ZMax;%maximum for the Z slider
|
---|
| 3644 | end
|
---|
| 3645 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles,ZBounds);% call the set_object interface with action on haxes,
|
---|
| 3646 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 3647 | pos_uvmat=get(huvmat,'Position');
|
---|
| 3648 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 3649 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 3650 | set(hset_object,'Position',pos_set_object)
|
---|
| 3651 | end
|
---|
| 3652 | list_object=get(handles.list_object,'String');
|
---|
| 3653 | nbobject=length(list_object);
|
---|
| 3654 | set(handles.list_object,'Value',nbobject)
|
---|
| 3655 | UvData.MouseAction='create_object';
|
---|
| 3656 | set(huvmat,'UserData',UvData)
|
---|
| 3657 |
|
---|
| 3658 | %-------------------------------------------------------
|
---|
| 3659 | % --- Executes on button press in MENUVOLUME.
|
---|
| 3660 | %-------------------------------------------------------
|
---|
| 3661 | function VOLUME_Callback(hObject, eventdata, handles)
|
---|
| 3662 | %errordlg('command VOL not implemented yet')
|
---|
| 3663 | if ishandle(handles.UVMAT_title)
|
---|
| 3664 | delete(handles.UVMAT_title)
|
---|
| 3665 | end
|
---|
| 3666 | huvmat=get(handles.create,'parent');
|
---|
| 3667 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 3668 | if isequal(get(handles.VOLUME,'Value'),1)
|
---|
| 3669 | set(handles.zoom,'Value',0)
|
---|
| 3670 | set(handles.zoom,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3671 | set(handles.edit_vect,'Value',0)
|
---|
| 3672 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3673 | set(handles.edit,'Value',0)
|
---|
| 3674 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3675 | set(handles.cal,'Value',0)
|
---|
| 3676 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 3677 | set(handles.edit_vect,'Value',0)
|
---|
| 3678 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3679 | %initiate set_object GUI
|
---|
| 3680 | data.TITLE='VOLUME';
|
---|
| 3681 | if isfield(UvData,'CoordType')
|
---|
| 3682 | data.CoordType=UvData.CoordType;
|
---|
| 3683 | end
|
---|
| 3684 | if isfield(UvData,'Mesh')&~isempty(UvData.Mesh)
|
---|
| 3685 | data.RangeY=UvData.Mesh;
|
---|
| 3686 | data.RangeX=UvData.Mesh;
|
---|
| 3687 | data.DX=UvData.Mesh;
|
---|
| 3688 | data.DY=UvData.Mesh;
|
---|
| 3689 | elseif isfield(UvData.Field,'AX')&isfield(UvData.Field,'AY')& isfield(UvData.Field,'A')%only image
|
---|
| 3690 | np=size(UvData.Field.A);
|
---|
| 3691 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/np(2);
|
---|
| 3692 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/np(1);
|
---|
| 3693 | data.RangeY=max(meshx,meshy);
|
---|
| 3694 | data.RangeX=max(meshx,meshy);
|
---|
| 3695 | data.DX=max(meshx,meshy);
|
---|
| 3696 | end
|
---|
| 3697 | data.ParentButton=handles.VOLUME;
|
---|
| 3698 | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters
|
---|
| 3699 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface with action on haxes,
|
---|
| 3700 | % associate the set_edit interface handle to the plotting axes
|
---|
| 3701 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 3702 | pos_uvmat=get(huvmat,'Position');
|
---|
| 3703 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 3704 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 3705 | set(hset_object,'Position',pos_set_object)
|
---|
| 3706 | end
|
---|
| 3707 | UvData.MouseAction='create_object';
|
---|
| 3708 | else
|
---|
| 3709 | set(handles.VOLUME,'BackgroundColor',[0 1 0])
|
---|
| 3710 | UvData.MouseAction='none';
|
---|
| 3711 | end
|
---|
| 3712 | set(huvmat,'UserData',UvData)
|
---|
| 3713 |
|
---|
| 3714 | %-------------------------------------------------------
|
---|
| 3715 | function edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 3716 | %-------------------------------------------------------
|
---|
[55] | 3717 |
|
---|
| 3718 | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
[2] | 3719 | if isequal(get(handles.edit_vect,'Value'),1)
|
---|
[55] | 3720 | test_civ2=isequal(get(handles.civ2,'BackgroundColor'),[1 1 0]);
|
---|
| 3721 | test_civ1=isequal(get(handles.civ1,'BackgroundColor'),[1 1 0]);
|
---|
| 3722 | if ~test_civ2 && ~test_civ1
|
---|
| 3723 | msgbox_uvmat('ERROR','manual correction only possible for CIV1 or CIV2 velocity fields')
|
---|
| 3724 | end
|
---|
[2] | 3725 | set(handles.record,'Visible','on')
|
---|
| 3726 | set(handles.edit_vect,'BackgroundColor',[1 1 0])
|
---|
| 3727 | set(handles.edit,'Value',0)
|
---|
| 3728 | set(handles.create,'Value',0)
|
---|
| 3729 | set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 3730 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3731 | set(gcf,'Pointer','arrow')
|
---|
| 3732 | UvData.MouseAction='edit_vect';
|
---|
| 3733 | else
|
---|
| 3734 | set(handles.record,'Visible','off')
|
---|
| 3735 | set(handles.edit_vect,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 3736 | UvData.MouseAction='none';
|
---|
| 3737 | end
|
---|
[55] | 3738 | set(handles.uvmat,'UserData',UvData)
|
---|
[2] | 3739 |
|
---|
| 3740 | %----------------------------------------------
|
---|
| 3741 | function save_mask_Callback(hObject, eventdata, handles)
|
---|
| 3742 | %-----------------------------------------------------------------------
|
---|
| 3743 | huvmat=get(handles.save_mask,'parent');
|
---|
| 3744 | UvData=get(huvmat,'UserData');
|
---|
| 3745 |
|
---|
| 3746 | hpatch=findobj(huvmat,'Type','patch');
|
---|
| 3747 | flag=1;
|
---|
| 3748 | npx=size(UvData.Field.A,2);
|
---|
| 3749 | npy=size(UvData.Field.A,1);
|
---|
| 3750 | xi=[0.5:npx-0.5];
|
---|
| 3751 | yi=[0.5:npy-0.5];
|
---|
| 3752 | [Xi,Yi]=meshgrid(xi,yi);
|
---|
| 3753 | if isfield(UvData,'Object')
|
---|
| 3754 | for iobj=1:length(UvData.Object)
|
---|
| 3755 | ObjectData=UvData.Object{iobj};
|
---|
| 3756 | if isfield(ObjectData,'ProjMode') &&(isequal(ObjectData.ProjMode,'mask_inside')||isequal(ObjectData.ProjMode,'mask_outside'));
|
---|
| 3757 | flagobj=1;
|
---|
| 3758 | testphys=0; %coordinates in pixels by default
|
---|
| 3759 | if isfield(ObjectData,'CoordType') && isequal(ObjectData.CoordType,'phys')
|
---|
| 3760 | if isfield(UvData,'XmlData')&& isfield(UvData.XmlData,'GeometryCalib')
|
---|
| 3761 | Calib=UvData.XmlData.GeometryCalib;
|
---|
| 3762 | testphys=1;
|
---|
| 3763 | end
|
---|
| 3764 | end
|
---|
| 3765 | if isfield(ObjectData,'Coord')& isfield(ObjectData,'Style')
|
---|
| 3766 | if isequal(ObjectData.Style,'polygon')
|
---|
| 3767 | X=ObjectData.Coord(:,1);
|
---|
| 3768 | Y=ObjectData.Coord(:,2);
|
---|
| 3769 | if testphys
|
---|
| 3770 | [X,Y]=px_XYZ(Calib,X,Y,0);% to generalise with 3D cases
|
---|
| 3771 | end
|
---|
| 3772 | flagobj=~inpolygon(Xi,Yi,X,Y);%=0 inside the polygon, 1 outside
|
---|
| 3773 | elseif isequal(ObjectData.Style,'ellipse')
|
---|
| 3774 | if testphys
|
---|
| 3775 | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys
|
---|
| 3776 | end
|
---|
| 3777 | RangeX=max(ObjectData.RangeX);
|
---|
| 3778 | RangeY=max(ObjectData.RangeY);
|
---|
| 3779 | X2Max=RangeX*RangeX;
|
---|
| 3780 | Y2Max=RangeY*RangeY;
|
---|
| 3781 | distX=(Xi-ObjectData.Coord(1,1));
|
---|
| 3782 | distY=(Yi-ObjectData.Coord(1,2));
|
---|
| 3783 | flagobj=(distX.*distX/X2Max+distY.*distY/Y2Max)>1;
|
---|
| 3784 | elseif isequal(ObjectData.Style,'rectangle')
|
---|
| 3785 | if testphys
|
---|
| 3786 | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys
|
---|
| 3787 | end
|
---|
| 3788 | distX=abs(Xi-ObjectData.Coord(1,1));
|
---|
| 3789 | distY=abs(Yi-ObjectData.Coord(1,2));
|
---|
| 3790 | flagobj=distX>max(ObjectData.RangeX) | distY>max(ObjectData.RangeY);
|
---|
| 3791 | end
|
---|
| 3792 | if isequal(ObjectData.ProjMode,'mask_outside')
|
---|
| 3793 | flagobj=~flagobj;
|
---|
| 3794 | end
|
---|
| 3795 | flag=flag & flagobj;
|
---|
| 3796 | end
|
---|
| 3797 | end
|
---|
| 3798 | end
|
---|
| 3799 | end
|
---|
| 3800 | % flag=~flag;
|
---|
| 3801 | %mask name
|
---|
| 3802 | RootPath=get(handles.RootPath,'String');
|
---|
| 3803 | RootFile=get(handles.RootFile,'String');
|
---|
| 3804 | if ~isempty(RootFile)&(isequal(RootFile(1),'/')| isequal(RootFile(1),'\'))
|
---|
| 3805 | RootFile(1)=[];
|
---|
| 3806 | end
|
---|
| 3807 | filebase=fullfile(RootPath,RootFile);
|
---|
| 3808 | list=get(handles.masklevel,'String');
|
---|
| 3809 | masknumber=num2str(length(list));
|
---|
| 3810 | maskindex=get(handles.masklevel,'Value');
|
---|
| 3811 | mask_name=name_generator([filebase '_' masknumber 'mask'],maskindex,1,'.png','_i');
|
---|
| 3812 | imflag=uint8(255*(0.392+0.608*flag));% =100 for flag=0 (vectors not computed when 20<imflag<200)
|
---|
| 3813 | imflag=flipdim(imflag,1);
|
---|
| 3814 | % imflag=uint8(255*flag);% =0 for flag=0 (vectors=0 when 20<imflag<200)
|
---|
[38] | 3815 | msgbox_uvmat('CONFIRMATION',[mask_name ' saved'])
|
---|
[2] | 3816 | imwrite(imflag,mask_name,'BitDepth',8);
|
---|
| 3817 |
|
---|
| 3818 | %display the mask
|
---|
| 3819 | %update_mask(handles,num_i1,num_j1)
|
---|
| 3820 | figure;
|
---|
| 3821 | vec=linspace(0,1,256);%define a linear greyscale colormap
|
---|
| 3822 | map=[vec' vec' vec'];
|
---|
| 3823 | colormap(map)
|
---|
| 3824 |
|
---|
| 3825 | image(imflag);
|
---|
| 3826 |
|
---|
| 3827 | %-------------------------------------------------------------------
|
---|
| 3828 | %-------------------------------------------------------------------
|
---|
| 3829 | % - FUNCTIONS FOR SETTING PLOTTING PARAMETERS
|
---|
| 3830 |
|
---|
| 3831 | %------------------------------------------------------------------
|
---|
| 3832 |
|
---|
| 3833 |
|
---|
| 3834 |
|
---|
| 3835 | %------------------------------------------------------------------
|
---|
| 3836 | % --- Executes on selection change in col_vec: choice of the color code.
|
---|
| 3837 | %
|
---|
| 3838 | function col_vec_Callback(hObject, eventdata, handles)
|
---|
| 3839 | %------------------------------------------------------------------
|
---|
| 3840 | % edit the choice for color code
|
---|
| 3841 | list_code=get(handles.col_vec,'String');% list menu fields
|
---|
| 3842 | index_code=get(handles.col_vec,'Value');% selected string index
|
---|
| 3843 | col_code= list_code{index_code(1)}; % selected field
|
---|
| 3844 | if isequal(col_code,'black') | isequal(col_code,'white')
|
---|
| 3845 | set(handles.slider1,'Visible','off')
|
---|
| 3846 | set(handles.slider2,'Visible','off')
|
---|
| 3847 | set(handles.colcode1,'Visible','off')
|
---|
| 3848 | set(handles.colcode2,'Visible','off')
|
---|
| 3849 | set(handles.AutoVecColor,'Visible','off')
|
---|
| 3850 | set_vec_col_bar(handles)
|
---|
| 3851 | else
|
---|
| 3852 | set(handles.slider1,'Visible','on')
|
---|
| 3853 | set(handles.slider2,'Visible','on')
|
---|
| 3854 | set(handles.colcode1,'Visible','on')
|
---|
| 3855 | set(handles.colcode2,'Visible','on')
|
---|
| 3856 | set(handles.AutoVecColor,'Visible','on')
|
---|
| 3857 | if isequal(col_code,'ima_cor')
|
---|
| 3858 | set(handles.AutoVecColor,'Value',0)%fixed scale by default
|
---|
| 3859 | set(handles.vec_col_bar,'Value',0)% 3 colors r,g,b by default
|
---|
| 3860 | set(handles.slider1,'Min',0);
|
---|
| 3861 | set(handles.slider1,'Max',1);
|
---|
| 3862 | set(handles.slider2,'Min',0);
|
---|
| 3863 | set(handles.slider2,'Max',1);
|
---|
| 3864 | % set(handles.min_title_vec,'String','0')
|
---|
| 3865 | set(handles.max_vec,'String','1')
|
---|
| 3866 | set(handles.colcode1,'String','0.333')
|
---|
| 3867 | colcode1_Callback(hObject, eventdata, handles)
|
---|
| 3868 | set(handles.colcode2,'String','0.666')
|
---|
| 3869 | colcode2_Callback(hObject, eventdata, handles)
|
---|
| 3870 | else
|
---|
| 3871 | set(handles.AutoVecColor,'Value',1)%auto scale between min,max by default
|
---|
| 3872 | set(handles.vec_col_bar,'Value',1)% colormap 'jet' by default
|
---|
| 3873 | minval=get(handles.slider1,'Min');
|
---|
| 3874 | maxval=get(handles.slider1,'Max');
|
---|
| 3875 | set(handles.slider1,'Value',minval)
|
---|
| 3876 | set(handles.slider2,'Value',maxval)
|
---|
| 3877 | set_vec_col_bar(handles)
|
---|
| 3878 | end
|
---|
| 3879 | % slider_update(handles)
|
---|
| 3880 | end
|
---|
| 3881 | %replot the current graph
|
---|
| 3882 | run0_Callback(hObject, eventdata, handles)
|
---|
| 3883 |
|
---|
| 3884 |
|
---|
| 3885 | %----------------------------------------------------------------
|
---|
| 3886 | % -- Executes on slider movement to set the color code
|
---|
| 3887 | %
|
---|
| 3888 | function slider1_Callback(hObject, eventdata, handles)
|
---|
| 3889 | %------------------------------------------------------------------
|
---|
| 3890 | slider1=get(handles.slider1,'Value');
|
---|
| 3891 | min_val=str2num(get(handles.min_vec,'String'));
|
---|
| 3892 | max_val=str2num(get(handles.max_vec,'String'));
|
---|
| 3893 | col=min_val+(max_val-min_val)*slider1;
|
---|
| 3894 | set(handles.colcode1,'String',num2str(col))
|
---|
| 3895 | if(get(handles.slider2,'Value') < col)%move also the second slider at the same value if needed
|
---|
| 3896 | set(handles.slider2,'Value',col)
|
---|
| 3897 | set(handles.colcode2,'String',num2str(col))
|
---|
| 3898 | end
|
---|
| 3899 | colcode1_Callback(hObject, eventdata, handles)
|
---|
| 3900 |
|
---|
| 3901 | %----------------------------------------------------------------
|
---|
| 3902 | % Executes on slider movement to set the color code
|
---|
| 3903 | %----------------------------------------------------------------
|
---|
| 3904 | function slider2_Callback(hObject, eventdata, handles)
|
---|
| 3905 | slider2=get(handles.slider2,'Value');
|
---|
| 3906 | min_val=str2num(get(handles.min_vec,'String'));
|
---|
| 3907 | max_val=str2num(get(handles.max_vec,'String'));
|
---|
| 3908 | col=min_val+(max_val-min_val)*slider2;
|
---|
| 3909 | set(handles.colcode2,'String',num2str(col))
|
---|
| 3910 | if(get(handles.slider1,'Value') > col)%move also the first slider at the same value if needed
|
---|
| 3911 | set(handles.slider1,'Value',col)
|
---|
| 3912 | set(handles.colcode1,'String',num2str(col))
|
---|
| 3913 | end
|
---|
| 3914 | colcode2_Callback(hObject, eventdata, handles)
|
---|
| 3915 |
|
---|
| 3916 | %----------------------------------------------------------------
|
---|
| 3917 | %execute on return carriage on the edit box corresponding to slider 1
|
---|
| 3918 | %----------------------------------------------------------------
|
---|
| 3919 | function colcode1_Callback(hObject, eventdata, handles)
|
---|
| 3920 | % col=str2num(get(handles.colcode1,'String'));
|
---|
| 3921 | % set(handles.slider1,'Value',col)
|
---|
| 3922 | set_vec_col_bar(handles)
|
---|
| 3923 | update_plot(handles)
|
---|
| 3924 |
|
---|
| 3925 | %----------------------------------------------------------------
|
---|
| 3926 | %execute on return carriage on the edit box corresponding to slider 2
|
---|
| 3927 | %----------------------------------------------------------------
|
---|
| 3928 | function colcode2_Callback(hObject, eventdata, handles)
|
---|
| 3929 | % col=str2num(get(handles.colcode2,'String'));
|
---|
| 3930 | % set(handles.slider2,'Value',col)
|
---|
| 3931 | % slider2_Callback(hObject, eventdata, handles)
|
---|
| 3932 | set_vec_col_bar(handles)
|
---|
| 3933 | update_plot(handles)
|
---|
| 3934 | %------------------------------------------------------------
|
---|
| 3935 | %update the slider values after displaying vectors
|
---|
| 3936 | %--------------------------------------------------------
|
---|
| 3937 | % function slider_update(handles,auto,minC,colcode1,colcode2,maxC)
|
---|
| 3938 | % set(handles.slider1,'Min',minC)
|
---|
| 3939 | % set(handles.slider1,'Max',maxC)
|
---|
| 3940 | % set(handles.slider2,'Min',minC)
|
---|
| 3941 | % set(handles.slider2,'Max',maxC)
|
---|
| 3942 | % set(handles.min_title_vec,'String',num2str(minC))
|
---|
| 3943 | % set(handles.max_vec,'String',num2str(maxC))
|
---|
| 3944 | % if auto
|
---|
| 3945 | % set(handles.colcode1,'String',num2str(colcode1,3))%update display
|
---|
| 3946 | % set(handles.colcode2,'String',num2str(colcode2,3))
|
---|
| 3947 | % end
|
---|
| 3948 | % set(handles.slider1,'Value',colcode1)%update slider with constant display
|
---|
| 3949 | % set(handles.slider2,'Value',colcode2)
|
---|
| 3950 | % set_vec_col_bar(handles)
|
---|
| 3951 |
|
---|
| 3952 |
|
---|
| 3953 | %-------------------------------------------------------
|
---|
| 3954 | % --- Executes on button press in AutoVecColor.
|
---|
| 3955 | %-------------------------------------------------------
|
---|
| 3956 | function vec_col_bar_Callback(hObject, eventdata, handles)
|
---|
| 3957 | set_vec_col_bar(handles)
|
---|
| 3958 |
|
---|
| 3959 | % %--------------------------------------------
|
---|
| 3960 | % %update the display of color code for vectors
|
---|
| 3961 | % %--------------------------------------------
|
---|
| 3962 | % function set_vec_col_bar(handles)
|
---|
| 3963 | % %get the image of the color display button 'vec_col_bar' in pixels
|
---|
| 3964 | % uni=get(handles.vec_col_bar,'Unit');
|
---|
| 3965 | % set(handles.vec_col_bar,'Unit','pixel')
|
---|
| 3966 | % pos_vert=get(handles.vec_col_bar,'Position');
|
---|
| 3967 | % set(handles.vec_col_bar,'Unit','Normalized')
|
---|
| 3968 | % width=ceil(pos_vert(3));
|
---|
| 3969 | % height=ceil(pos_vert(4));
|
---|
| 3970 | % %get slider indications
|
---|
| 3971 | % colcode.min=get(handles.slider1,'Min');
|
---|
| 3972 | % colcode.max=get(handles.slider1,'Max');
|
---|
| 3973 | % colcode.colcode1=get(handles.slider1,'Value');
|
---|
| 3974 | % colcode.colcode2=get(handles.slider2,'Value');
|
---|
| 3975 | % colcode.option=get(handles.vec_col_bar,'Value');
|
---|
| 3976 | % colcode.auto=1;
|
---|
| 3977 | % list_code=get(handles.col_vec,'String');% list menu fields
|
---|
| 3978 | % index_code=get(handles.col_vec,'Value');% selected string index
|
---|
| 3979 | % colcode.CName= list_code{index_code(1)}; % selected field used for vector color
|
---|
| 3980 | % vec_C=colcode.min+(colcode.max-colcode.min)*[0.5:width-0.5]/width;%sample of vec_C values from min to max
|
---|
| 3981 | % [colorlist,col_vec]=set_col_vec(colcode,vec_C);
|
---|
| 3982 | % oneheight=ones(1,height);
|
---|
| 3983 | % A1=colorlist(col_vec,1)*oneheight;
|
---|
| 3984 | % A2=colorlist(col_vec,2)*oneheight;
|
---|
| 3985 | % A3=colorlist(col_vec,3)*oneheight;
|
---|
| 3986 | % A(:,:,1)=A1';
|
---|
| 3987 | % A(:,:,2)=A2';
|
---|
| 3988 | % A(:,:,3)=A3';
|
---|
| 3989 | % set(handles.vec_col_bar,'Cdata',A)
|
---|
| 3990 |
|
---|
| 3991 | %--------------------------------------------------------
|
---|
| 3992 | % --- Executes on button press in cal.
|
---|
| 3993 | function cal_Callback(hObject, eventdata, handles)
|
---|
| 3994 |
|
---|
| 3995 | huvmat=get(handles.cal,'parent');%handles of the uvmat interface
|
---|
| 3996 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 3997 | %reinitialize the edit interface associated with uvmat
|
---|
| 3998 | value=get(handles.cal,'Value');
|
---|
| 3999 | if value
|
---|
| 4000 | set(handles.cal,'BackgroundColor',[1 1 0])
|
---|
| 4001 | %suppress the other options if MENULINE is chosen
|
---|
| 4002 | set(handles.zoom,'Value',0)
|
---|
| 4003 | set(handles.zoom,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4004 | set(handles.create,'Value',0)
|
---|
| 4005 | set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 4006 | set(handles.create,'enable','off')
|
---|
| 4007 | set(handles.edit_vect,'Value',0)
|
---|
| 4008 | set(handles.edit_vect,'enable','off')
|
---|
| 4009 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4010 | set(handles.edit,'Value',0)
|
---|
| 4011 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4012 | set(handles.edit,'enable','off')
|
---|
| 4013 | set(handles.list_object,'Value',1)
|
---|
| 4014 | % initiate display of GUI geometry_calib
|
---|
| 4015 | data=[]; %default
|
---|
| 4016 | if isfield(UvData,'CoordType')
|
---|
| 4017 | data.CoordType=UvData.CoordType;
|
---|
| 4018 | end
|
---|
| 4019 | %data.ParentButton=handles.cal; % transmit the handles of the calling button to the GUI geometry_calib
|
---|
| 4020 | pos=get(huvmat,'Position');
|
---|
| 4021 | pos(1)=pos(1)+pos(3)-0.311+0.04; %0.311= width of the geometry_calib interface (units relative to the srcreen)
|
---|
| 4022 | pos(2)=pos(2)-0.02;
|
---|
| 4023 | [FileName,RootPath,FileBase,FileIndices,FileExt,SubDir]=read_file_boxes(handles);
|
---|
| 4024 | % [filebase,num_i1,num_j1,num_i2,num_j2,Ext,NomType,SubDir]=read_input_file(handles);
|
---|
| 4025 | % [inputfile,idetect]=name_generator(filebase,num_i1,num_j1,Ext,NomType,1,num_i2,num_j2,SubDir);
|
---|
| 4026 | [UvData.hset_object,UvData.sethandles]=geometry_calib(handles,pos,FileName);% call the set_object interface
|
---|
| 4027 | pos_uvmat=get(huvmat,'Position');
|
---|
| 4028 | %pos_cal(1:2)=UvData.CalOrigin + pos_uvmat(1:2);
|
---|
| 4029 | if isfield(UvData,'CalOrigin')
|
---|
| 4030 | pos_cal(1)=pos_uvmat(1)+UvData.CalOrigin(1)*pos_uvmat(3);
|
---|
| 4031 | pos_cal(2)=pos_uvmat(2)+UvData.CalOrigin(2)*pos_uvmat(4);
|
---|
| 4032 | pos_cal(3:4)=UvData.CalSize .* pos_uvmat(3:4);
|
---|
| 4033 | set(UvData.hset_object,'Position',pos_cal)
|
---|
| 4034 | end
|
---|
| 4035 | UvData.MouseAction='calib';
|
---|
| 4036 | else
|
---|
| 4037 | UvData.MouseAction='none';
|
---|
| 4038 | hgeometry_calib=findobj(allchild(0),'Name','geometry_calib');
|
---|
| 4039 | % if ~isempty(hgeometry_calib)
|
---|
| 4040 | % answer=questdlg('close the GUI geometry-calib?');
|
---|
| 4041 | % if isequal(answer,'Yes')
|
---|
| 4042 | % delete(hgeometry_calib)
|
---|
| 4043 | % set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 4044 | % else
|
---|
| 4045 | % set(handles.cal,'Value',1)% keep the calibration function active
|
---|
| 4046 | % end
|
---|
| 4047 | % end
|
---|
| 4048 | set(handles.edit_vect,'enable','on')
|
---|
| 4049 | set(handles.edit,'enable','on')
|
---|
| 4050 | set(handles.create,'enable','on')
|
---|
| 4051 | % set(handles.LINE,'enable','on')
|
---|
| 4052 | % set(handles.PATCH,'enable','on')
|
---|
| 4053 | % set(handles.PLANE,'enable','on')
|
---|
| 4054 | % set(handles.VOLUME,'enable','on')
|
---|
| 4055 | %set(handles.makemask,'enable','on')
|
---|
| 4056 | hh=findobj(handles.axes3,'Tag','calib_points');
|
---|
| 4057 | if ~isempty(hh)
|
---|
| 4058 | delete(hh)
|
---|
| 4059 | end
|
---|
| 4060 | hhh=findobj(handles.axes3,'Tag','calib_marker');
|
---|
| 4061 | if ~isempty(hhh)
|
---|
| 4062 | delete(hhh)
|
---|
| 4063 | end
|
---|
| 4064 | end
|
---|
| 4065 | set(huvmat,'UserData',UvData);
|
---|
| 4066 |
|
---|
| 4067 | %-------------------------------------------------------------
|
---|
[39] | 4068 | % --- Executes on selection change in transform_fct.
|
---|
| 4069 | function transform_fct_Callback(hObject, eventdata, handles)
|
---|
[2] | 4070 | %-------------------------------------------------------------
|
---|
[39] | 4071 | global nb_builtin
|
---|
| 4072 |
|
---|
| 4073 | huvmat=get(handles.transform_fct,'parent');
|
---|
| 4074 | menu=get(handles.transform_fct,'String');
|
---|
| 4075 | ind_coord=get(handles.transform_fct,'Value');
|
---|
[2] | 4076 | coord_option=menu{ind_coord};
|
---|
[39] | 4077 | list_transform=get(handles.transform_fct,'UserData');
|
---|
[40] | 4078 | ff=functions(list_transform{end});
|
---|
[2] | 4079 | if isequal(coord_option,'more...');
|
---|
| 4080 | coord_fct='';
|
---|
[39] | 4081 |
|
---|
| 4082 | % if exist(profil_perso,'file')
|
---|
| 4083 | % h=load (profil_perso);
|
---|
| 4084 | % if isfield(h,'transform_fct')
|
---|
| 4085 | % transform_fct=h.transform_fct;
|
---|
| 4086 | % end
|
---|
| 4087 | % end
|
---|
[2] | 4088 | prompt = {'Enter the name of the transform function'};
|
---|
| 4089 | dlg_title = 'user defined transform';
|
---|
| 4090 | num_lines= 1;
|
---|
| 4091 | [FileName, PathName, filterindex] = uigetfile( ...
|
---|
| 4092 | {'*.m', ' (*.m)';
|
---|
| 4093 | '*.m', '.m files '; ...
|
---|
| 4094 | '*.*', 'All Files (*.*)'}, ...
|
---|
[39] | 4095 | 'Pick a file', ff.file);
|
---|
[2] | 4096 | if isequal(PathName(end),'/')||isequal(PathName(end),'\')
|
---|
| 4097 | PathName(end)=[];
|
---|
| 4098 | end
|
---|
[39] | 4099 | transform_selected =fullfile(PathName,FileName);
|
---|
| 4100 | if ~exist(transform_selected,'file')
|
---|
| 4101 | % msgbox_uvmat('ERROR',['procesing fct ' transform_selected ' not found'])
|
---|
| 4102 | return
|
---|
| 4103 | end
|
---|
| 4104 | [ppp,transform,ext_fct]=fileparts(FileName);% removes extension .m
|
---|
| 4105 | if ~isequal(ext_fct,'.m')
|
---|
| 4106 | msgbox_uvmat('ERROR','a Matlab function .m must be introduced');
|
---|
| 4107 | return
|
---|
| 4108 | end
|
---|
| 4109 | menu=update_menu(handles.transform_fct,transform);%add the selected fct to the menu
|
---|
| 4110 | ind_coord=get(handles.transform_fct,'Value');
|
---|
| 4111 | addpath(PathName)
|
---|
| 4112 | list_transform{ind_coord}=str2func(transform);% create the function handle corresponding to the newly seleced function
|
---|
| 4113 | set(handles.transform_fct,'UserData',list_transform)
|
---|
| 4114 | rmpath(PathName)
|
---|
| 4115 | % save the new menu in the personal file 'uvmat_perso.mat'
|
---|
| 4116 | dir_perso=prefdir;%personal Matalb directory
|
---|
| 4117 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat');
|
---|
| 4118 | if exist(profil_perso,'file')
|
---|
| 4119 | for ilist=nb_builtin+1:numel(list_transform)
|
---|
| 4120 | ff=functions(list_transform{ilist});
|
---|
| 4121 | transform_fct{ilist-nb_builtin}=ff.file;
|
---|
| 4122 | end
|
---|
| 4123 | save (profil_perso,'transform_fct','-append'); %store the root name for future opening of uvmat
|
---|
| 4124 | end
|
---|
[2] | 4125 | end
|
---|
| 4126 |
|
---|
| 4127 | %check the current path to the selected function
|
---|
[40] | 4128 | if isa(list_transform{ind_coord},'function_handle')
|
---|
| 4129 | func=functions(list_transform{ind_coord});
|
---|
| 4130 | set(handles.path_transform,'String',fileparts(func.file)); %show the path to the senlected function
|
---|
| 4131 | else
|
---|
| 4132 | set(handles.path_transform,'String','')
|
---|
| 4133 | end
|
---|
[38] | 4134 | %CurrentPath=fileparts(which(coord_option));
|
---|
| 4135 | % if ~isequal(PathName,CurrentPath)
|
---|
| 4136 | % addpath(PathName)
|
---|
| 4137 | % errormsg=check_functions;
|
---|
| 4138 | % msgbox_uvmat('WARNING',[['path ' PathName ' added to the current Matlab pathes'];errormsg])
|
---|
| 4139 | % end
|
---|
| 4140 | %set(handles.path_transform,'String',fullfile(PathName,' ')); %show the path to the senlected function
|
---|
[2] | 4141 | set(handles.FixedLimits,'Value',0)
|
---|
| 4142 | set(handles.FixedLimits,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4143 |
|
---|
| 4144 | UvData=get(huvmat,'UserData');
|
---|
| 4145 |
|
---|
| 4146 | %delete drawn objects
|
---|
| 4147 | hother=findobj('Tag','proj_object');%find all the proj objects
|
---|
| 4148 | for iobj=1:length(hother)
|
---|
| 4149 | delete_object(hother(iobj))
|
---|
| 4150 | end
|
---|
| 4151 | hother=findobj('Tag','DeformPoint');%find all the proj objects
|
---|
| 4152 | for iobj=1:length(hother)
|
---|
| 4153 | delete_object(hother(iobj))
|
---|
| 4154 | end
|
---|
| 4155 | hh=findobj('Tag','calib_points');
|
---|
| 4156 | if ~isempty(hh)
|
---|
| 4157 | delete(hh)
|
---|
| 4158 | end
|
---|
| 4159 | hhh=findobj('Tag','calib_marker');
|
---|
| 4160 | if ~isempty(hhh)
|
---|
| 4161 | delete(hhh)
|
---|
| 4162 | end
|
---|
| 4163 | if isfield(UvData,'Object')
|
---|
| 4164 | nbobject=length(UvData.Object);
|
---|
| 4165 | UvData.Object([2:nbobject])=[];
|
---|
| 4166 | end
|
---|
| 4167 |
|
---|
| 4168 | %delete mask if it is displayed
|
---|
| 4169 | if isequal(get(handles.mask_test,'Value'),1)%if the mask option is on
|
---|
| 4170 | UvData=rmfield(UvData,'MaskName'); %will impose mask refresh
|
---|
| 4171 | end
|
---|
| 4172 | set(huvmat,'UserData',UvData)
|
---|
| 4173 | run0_Callback(hObject, eventdata, handles)
|
---|
| 4174 |
|
---|
| 4175 | %--------------------------------------------
|
---|
| 4176 | function histo1_menu_Callback(hObject, eventdata, handles)
|
---|
| 4177 | %--------------------------------------------
|
---|
| 4178 | %plot first histo
|
---|
| 4179 | huvmat=get(handles.histo1_menu,'parent');
|
---|
| 4180 | histo_menu=get(handles.histo1_menu,'String');
|
---|
| 4181 | histo_value=get(handles.histo1_menu,'Value');
|
---|
| 4182 | FieldName=histo_menu{histo_value};
|
---|
| 4183 | UvData=get(huvmat,'UserData');
|
---|
| 4184 | update_histo(handles.histo_u,huvmat,FieldName)
|
---|
| 4185 |
|
---|
| 4186 | %----------------------------------------------
|
---|
| 4187 | function histo2_menu_Callback(hObject, eventdata, handles)
|
---|
| 4188 | %----------------------------------------------
|
---|
| 4189 | %plot second histo
|
---|
| 4190 | huvmat=get(handles.histo2_menu,'parent');
|
---|
| 4191 | histo_menu=get(handles.histo2_menu,'String');
|
---|
| 4192 | histo_value=get(handles.histo2_menu,'Value');
|
---|
| 4193 | FieldName=histo_menu{histo_value};
|
---|
| 4194 | UvData=get(huvmat,'UserData');
|
---|
| 4195 | update_histo(handles.histo_v,huvmat,FieldName)
|
---|
| 4196 |
|
---|
| 4197 |
|
---|
| 4198 | %--------------------------------------------
|
---|
| 4199 | %read the field .Fieldname stored in UvData and plot its histogram
|
---|
| 4200 | function update_histo(haxes,huvmat,FieldName)
|
---|
| 4201 | UvData=get(huvmat,'UserData');
|
---|
| 4202 |
|
---|
| 4203 | if ~isfield(UvData.Field,FieldName)
|
---|
| 4204 | msgbox_uvmat('ERROR',['no field ' FieldName ' for histogram'])
|
---|
| 4205 | return
|
---|
| 4206 | end
|
---|
| 4207 | Field=UvData.Field;
|
---|
| 4208 | FieldHisto=eval(['Field.' FieldName]);
|
---|
| 4209 | if isfield(Field,'FF') & ~isempty(Field.FF) & isequal(size(Field.FF),size(FieldHisto))
|
---|
| 4210 | indsel=find(Field.FF==0);%find values marked as false
|
---|
| 4211 | if ~isempty(indsel)
|
---|
| 4212 | FieldHisto=FieldHisto(indsel);
|
---|
| 4213 | end
|
---|
| 4214 | end
|
---|
| 4215 | if isempty(Field)
|
---|
| 4216 | msgbox_uvmat('ERROR',['empty field ' FieldName])
|
---|
| 4217 | else
|
---|
| 4218 | nxy=size(FieldHisto);
|
---|
| 4219 | Amin=double(min(min(min(FieldHisto))));%min of image
|
---|
| 4220 | Amax=double(max(max(max(FieldHisto))));%max of image
|
---|
| 4221 | if isequal(Amin,Amax)
|
---|
| 4222 | Histo.Txt=['uniform field =' num2str(Amin)];
|
---|
| 4223 | else
|
---|
| 4224 | Histo.ListVarName={FieldName,'histo'};
|
---|
| 4225 | if numel(nxy)==2
|
---|
| 4226 | Histo.VarDimName={FieldName,FieldName}; %dimensions for the histogram
|
---|
| 4227 | else %color images
|
---|
| 4228 | Histo.VarDimName={FieldName,{FieldName,'rgb'}}; %dimensions for the histogram
|
---|
| 4229 | end
|
---|
| 4230 | %unit
|
---|
| 4231 | units=[]; %default
|
---|
| 4232 | for ivar=1:numel(Field.ListVarName)
|
---|
| 4233 | if strcmp(Field.ListVarName{ivar},FieldName)
|
---|
| 4234 | if isfield(Field,'VarAttribute') && numel(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'units')
|
---|
| 4235 | units=Field.VarAttribute{ivar}.units;
|
---|
| 4236 | break
|
---|
| 4237 | end
|
---|
| 4238 | end
|
---|
| 4239 | end
|
---|
| 4240 | if ~isempty(units)
|
---|
| 4241 | Histo.VarAttribute{1}.units=units;
|
---|
| 4242 | end
|
---|
| 4243 | eval(['Histo.' FieldName '=linspace(Amin,Amax,50);'])%absissa values for histo
|
---|
| 4244 | for col=1:size(FieldHisto,3)
|
---|
| 4245 | B=FieldHisto(:,:,col);
|
---|
| 4246 | C=reshape(double(B),1,nxy(1)*nxy(2));% reshape in a vector
|
---|
| 4247 | eval(['Histo.histo(:,col)=hist(C, Histo.' FieldName ');']); %calculate histogram
|
---|
| 4248 | end
|
---|
| 4249 | set(haxes,'XLimMode','auto')%reset auto mode (after zoom effect)
|
---|
| 4250 | set(haxes,'YLimMode','auto')
|
---|
| 4251 | plot_field(Histo,haxes);
|
---|
| 4252 | end
|
---|
| 4253 | end
|
---|
| 4254 |
|
---|
| 4255 |
|
---|
| 4256 |
|
---|
| 4257 | %------------------------------------------------
|
---|
| 4258 | %CALLBACKS FOR PLOTTING PARAMETERS
|
---|
| 4259 | %-------------------------------------------------
|
---|
| 4260 |
|
---|
| 4261 | %-----------------------------------------------------------------
|
---|
| 4262 | function MinA_Callback(hObject, eventdata, handles)
|
---|
| 4263 | %------------------------------------------
|
---|
| 4264 | set(handles.AutoScal,'Value',1) %suppress auto mode
|
---|
| 4265 | set(handles.AutoScal,'BackgroundColor',[1 1 0])
|
---|
| 4266 | update_plot(handles)
|
---|
| 4267 |
|
---|
| 4268 | %-----------------------------------------------------------------
|
---|
| 4269 | function MaxA_Callback(hObject, eventdata, handles)
|
---|
| 4270 | %--------------------------------------------
|
---|
| 4271 | set(handles.AutoScal,'Value',1) %suppress auto mode
|
---|
| 4272 | set(handles.AutoScal,'BackgroundColor',[1 1 0])
|
---|
| 4273 | update_plot(handles)
|
---|
| 4274 |
|
---|
| 4275 | %-----------------------------------------------
|
---|
| 4276 | function AutoScal_Callback(hObject, eventdata, handles)
|
---|
| 4277 | %--------------------------------------------
|
---|
| 4278 | test=get(handles.AutoScal,'Value');
|
---|
| 4279 | if test
|
---|
| 4280 | set(handles.AutoScal,'BackgroundColor',[1 1 0])
|
---|
| 4281 | else
|
---|
| 4282 | set(handles.AutoScal,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4283 | update_plot(handles);
|
---|
| 4284 | % set(handles.MinA,'String',num2str(ScalOut.MinA,3))
|
---|
| 4285 | % set(handles.MaxA,'String',num2str(ScalOut.MaxA,3))
|
---|
| 4286 | end
|
---|
| 4287 |
|
---|
| 4288 | %-------------------------------------------------------------------
|
---|
| 4289 | function BW_Callback(hObject, eventdata, handles)
|
---|
| 4290 | %-------------------------------------------------------------------
|
---|
| 4291 | update_plot(handles)
|
---|
| 4292 |
|
---|
| 4293 | %-------------------------------------------------------------------
|
---|
| 4294 | function Contours_Callback(hObject, eventdata, handles)
|
---|
| 4295 | %-------------------------------------------------------------------
|
---|
| 4296 | val=get(handles.Contours,'Value');
|
---|
| 4297 | if val==2
|
---|
| 4298 | set(handles.interval_txt,'Visible','on')
|
---|
| 4299 | set(handles.IncrA,'Visible','on')
|
---|
| 4300 | else
|
---|
| 4301 | set(handles.interval_txt,'Visible','off')
|
---|
| 4302 | set(handles.IncrA,'Visible','off')
|
---|
| 4303 | end
|
---|
| 4304 | update_plot(handles)
|
---|
| 4305 |
|
---|
| 4306 | %-------------------------------------------------------------------
|
---|
| 4307 | function IncrA_Callback(hObject, eventdata, handles)
|
---|
| 4308 | %-------------------------------------------------------------------
|
---|
| 4309 | update_plot(handles)
|
---|
| 4310 |
|
---|
| 4311 | %-------------------------------------------------------------------
|
---|
| 4312 | function HideWarning_Callback(hObject, eventdata, handles)
|
---|
| 4313 | %-------------------------------------------------------------------
|
---|
| 4314 | update_plot(handles)
|
---|
| 4315 |
|
---|
| 4316 | %-------------------------------------------------------------------
|
---|
| 4317 | function HideFalse_Callback(hObject, eventdata, handles)
|
---|
| 4318 | %-------------------------------------------------------------------
|
---|
| 4319 | update_plot(handles)
|
---|
| 4320 |
|
---|
| 4321 | %-------------------------------------------------------------------
|
---|
| 4322 | function VecScale_Callback(hObject, eventdata, handles)
|
---|
| 4323 | %-------------------------------------------------------------------
|
---|
| 4324 | set(handles.AutoVec,'Value',1);
|
---|
| 4325 | set(handles.AutoVec,'BackgroundColor',[1 1 0])
|
---|
| 4326 | update_plot(handles)
|
---|
| 4327 |
|
---|
| 4328 | %-------------------------------------------------------------------
|
---|
| 4329 | function AutoVec_Callback(hObject, eventdata, handles)
|
---|
| 4330 | %-------------------------------------------------------------------
|
---|
| 4331 | test=get(handles.AutoVec,'Value');
|
---|
| 4332 | if test
|
---|
| 4333 | set(handles.AutoVec,'BackgroundColor',[1 1 0])
|
---|
| 4334 | else
|
---|
| 4335 | update_plot(handles);
|
---|
| 4336 | %set(handles.VecScale,'String',num2str(ScalOut.VecScale,3))
|
---|
| 4337 | set(handles.AutoVec,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4338 | end
|
---|
| 4339 |
|
---|
| 4340 | %-------------------------------------------------------
|
---|
| 4341 | % --- Executes on selection change in decimate4 (nb_vec/4).
|
---|
| 4342 | %-------------------------------------------------------
|
---|
| 4343 | function decimate4_Callback(hObject, eventdata, handles)
|
---|
| 4344 | update_plot(handles)
|
---|
| 4345 |
|
---|
| 4346 |
|
---|
| 4347 | %-------------------------------------------------------
|
---|
| 4348 | % --- Executes on selection change in color_code menu
|
---|
| 4349 | %-------------------------------------------------------
|
---|
| 4350 | function color_code_Callback(hObject, eventdata, handles)
|
---|
| 4351 | set_vec_col_bar(handles)
|
---|
| 4352 | update_plot(handles);
|
---|
| 4353 |
|
---|
| 4354 | %-------------------------------------------------------
|
---|
| 4355 | % --- Executes on button press in AutoVecColor.
|
---|
| 4356 | %-------------------------------------------------------
|
---|
| 4357 | function AutoVecColor_Callback(hObject, eventdata, handles)
|
---|
| 4358 | test=get(handles.AutoVecColor,'Value');
|
---|
| 4359 | if test
|
---|
| 4360 | set(handles.AutoVecColor,'BackgroundColor',[1 1 0])
|
---|
| 4361 | else
|
---|
| 4362 | update_plot(handles);
|
---|
| 4363 | %set(handles.VecScale,'String',num2str(ScalOut.VecScale,3))
|
---|
| 4364 | set(handles.AutoVecColor,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4365 | end
|
---|
| 4366 | %set_vec_col_bar(handles)
|
---|
| 4367 |
|
---|
| 4368 | %-------------------------------------------------------
|
---|
| 4369 | % --- Executes on selection change in max_vec.
|
---|
| 4370 | %-------------------------------------------------------
|
---|
| 4371 | function min_vec_Callback(hObject, eventdata, handles)
|
---|
| 4372 | max_vec_Callback(hObject, eventdata, handles)
|
---|
| 4373 |
|
---|
| 4374 | % --- Executes on selection change in max_vec.
|
---|
| 4375 | function max_vec_Callback(hObject, eventdata, handles)
|
---|
| 4376 | set(handles.AutoVecColor,'Value',1)
|
---|
| 4377 | AutoVecColor_Callback(hObject, eventdata, handles)
|
---|
| 4378 | min_val=str2num(get(handles.min_vec,'String'));
|
---|
| 4379 | max_val=str2num(get(handles.max_vec,'String'));
|
---|
| 4380 | slider1=get(handles.slider1,'Value');
|
---|
| 4381 | slider2=get(handles.slider2,'Value');
|
---|
| 4382 | colcode1=min_val+(max_val-min_val)*slider1;
|
---|
| 4383 | colcode2=min_val+(max_val-min_val)*slider2;
|
---|
| 4384 | set(handles.colcode1,'String',num2str(colcode1))
|
---|
| 4385 | set(handles.colcode2,'String',num2str(colcode2))
|
---|
| 4386 | update_plot(handles);
|
---|
| 4387 |
|
---|
| 4388 | %-------------------------------------------------------------------
|
---|
| 4389 | %update the display of color code for vectors
|
---|
| 4390 | function set_vec_col_bar(handles)
|
---|
| 4391 | %-------------------------------------------------------------------
|
---|
| 4392 | %get the image of the color display button 'vec_col_bar' in pixels
|
---|
| 4393 | set(handles.vec_col_bar,'Unit','pixel');
|
---|
| 4394 | pos_vert=get(handles.vec_col_bar,'Position');
|
---|
| 4395 | set(handles.vec_col_bar,'Unit','Normalized');
|
---|
| 4396 | width=ceil(pos_vert(3));
|
---|
| 4397 | height=ceil(pos_vert(4));
|
---|
| 4398 |
|
---|
| 4399 | %get slider indications
|
---|
| 4400 | list=get(handles.color_code,'String');
|
---|
| 4401 | ichoice=get(handles.color_code,'Value');
|
---|
| 4402 | colcode.ColorCode=list{ichoice};
|
---|
| 4403 | colcode.MinC=str2num(get(handles.min_vec,'String'));
|
---|
| 4404 | colcode.MaxC=str2num(get(handles.max_vec,'String'));
|
---|
| 4405 | test3color=strcmp(colcode.ColorCode,'rgb') || strcmp(colcode.ColorCode,'bgr');
|
---|
| 4406 | if test3color
|
---|
| 4407 | colcode.colcode1=str2num(get(handles.colcode1,'String'));
|
---|
| 4408 | colcode.colcode2=str2num(get(handles.colcode2,'String'));
|
---|
| 4409 | end
|
---|
| 4410 | % colcode.option=get(handles.vec_col_bar,'Value');
|
---|
| 4411 | colcode.FixedCbounds=0;
|
---|
| 4412 | % list_code=get(handles.col_vec,'String');% list menu fields
|
---|
| 4413 | % index_code=get(handles.col_vec,'Value');% selected string index
|
---|
| 4414 | % colcode.CName= list_code{index_code(1)}; % selected field used for vector color
|
---|
| 4415 | colcode.FixedCbounds=1;
|
---|
| 4416 | vec_C=colcode.MinC+(colcode.MaxC-colcode.MinC)*[0.5:width-0.5]/width;%sample of vec_C values from min to max
|
---|
| 4417 | [colorlist,col_vec]=set_col_vec(colcode,vec_C);
|
---|
| 4418 | oneheight=ones(1,height);
|
---|
| 4419 | A1=colorlist(col_vec,1)*oneheight;
|
---|
| 4420 | A2=colorlist(col_vec,2)*oneheight;
|
---|
| 4421 | A3=colorlist(col_vec,3)*oneheight;
|
---|
| 4422 | A(:,:,1)=A1';
|
---|
| 4423 | A(:,:,2)=A2';
|
---|
| 4424 | A(:,:,3)=A3';
|
---|
| 4425 | set(handles.vec_col_bar,'Cdata',A)
|
---|
| 4426 |
|
---|
| 4427 |
|
---|
| 4428 | %-------------------------------------------------------------------
|
---|
| 4429 | function [PlotType,ScalOut]=update_plot(handles)
|
---|
| 4430 | %-------------------------------------------------------------------
|
---|
| 4431 | haxes= handles.axes3;
|
---|
| 4432 | AxeData=get(haxes,'UserData');
|
---|
| 4433 | PlotParam=read_plot_param(handles);
|
---|
| 4434 | [PlotType,PlotParamOut]= plot_field(AxeData,haxes,PlotParam,1);
|
---|
| 4435 | write_plot_param(handles,PlotParamOut); %update the auto plot parameters
|
---|
| 4436 |
|
---|
| 4437 | %-------------------------------------------------------------------
|
---|
| 4438 | % --- Executes on button press in grid.
|
---|
| 4439 | function grid_Callback(hObject, eventdata, handles)
|
---|
| 4440 | %-------------------------------------------------------------------
|
---|
| 4441 | huvmat=get(handles.create,'parent');
|
---|
| 4442 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 4443 |
|
---|
| 4444 | %suppress the other options if grid is chosen
|
---|
| 4445 | set(handles.create,'Value',0)
|
---|
| 4446 | set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 4447 | set(handles.edit_vect,'Value',0)
|
---|
| 4448 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4449 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4450 | set(handles.edit_vect,'Value',0)
|
---|
| 4451 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4452 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4453 | set(handles.list_object,'Value',1)
|
---|
| 4454 | set(handles.cal,'Value',0)
|
---|
| 4455 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 4456 |
|
---|
| 4457 | %prepare display of the set_grid GUI
|
---|
| 4458 | data.fixedtitle=1;
|
---|
| 4459 | FileName=read_file_boxes(handles);
|
---|
| 4460 | [hset_object,UvData.sethandles]=set_grid(FileName);% call the set_object interface
|
---|
| 4461 | set(huvmat,'UserData',UvData);
|
---|
| 4462 |
|
---|
| 4463 |
|
---|
| 4464 | %-------------------------------------------------------------------
|
---|
| 4465 | % --- Executes on selection change in edit.
|
---|
| 4466 | function edit_Callback(hObject, eventdata, handles)
|
---|
| 4467 | %-------------------------------------------------------------------
|
---|
| 4468 | huvmat=get(handles.list_object,'parent');
|
---|
| 4469 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 4470 | test=get(handles.edit,'Value');
|
---|
| 4471 | if test
|
---|
| 4472 | UvData.MouseAction='edit_object';
|
---|
| 4473 | set(handles.edit,'BackgroundColor',[1,1,0])
|
---|
| 4474 | %suppress the other options
|
---|
| 4475 | set(handles.zoom,'Value',0)
|
---|
| 4476 | zoom_Callback(hObject, eventdata, handles)
|
---|
| 4477 | set(handles.create,'Value',0)
|
---|
| 4478 | set(handles.create,'BackgroundColor',[0 1 0])
|
---|
| 4479 | % set(handles.LINE,'Value',0)
|
---|
| 4480 | % set(handles.LINE,'BackgroundColor',[0 1 0])
|
---|
| 4481 | % set(handles.PATCH,'Value',0)
|
---|
| 4482 | % set(handles.PATCH,'BackgroundColor',[0 1 0])
|
---|
| 4483 | % set(handles.PLANE,'Value',0)
|
---|
| 4484 | % set(handles.PLANE,'BackgroundColor',[0 1 0])%put activated buttons to yellow
|
---|
| 4485 | % set(handles.VOLUME,'Value',0)
|
---|
| 4486 | % set(handles.VOLUME,'BackgroundColor',[0 1 0])
|
---|
| 4487 | set(handles.edit_vect,'Value',0)
|
---|
| 4488 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4489 | set(handles.cal,'Value',0)
|
---|
| 4490 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 4491 | %set(handles.grid,'Value',0)
|
---|
| 4492 | %set(handles.grid,'BackgroundColor',[0 1 0])
|
---|
| 4493 | list_object_Callback(hObject, eventdata, handles)
|
---|
| 4494 | else
|
---|
| 4495 | UvData.MouseAction='none';
|
---|
| 4496 | set(handles.edit,'BackgroundColor',[0.7,0.7,0.7])
|
---|
| 4497 | end
|
---|
| 4498 | set(huvmat,'UserData',UvData);
|
---|
| 4499 |
|
---|
| 4500 | %--------------------------------------------------------
|
---|
| 4501 | % --- Executes on selection change in list_object.
|
---|
| 4502 | %--------------------------------------------------------
|
---|
| 4503 | function list_object_Callback(hObject, eventdata, handles)
|
---|
| 4504 | huvmat=get(handles.list_object,'parent');
|
---|
| 4505 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 4506 | list_str=get(handles.list_object,'String');
|
---|
| 4507 | IndexObj=get(handles.list_object,'Value');
|
---|
| 4508 |
|
---|
| 4509 | if ~(length(UvData.Object)>=IndexObj);
|
---|
| 4510 | return
|
---|
| 4511 | end
|
---|
| 4512 | ObjectData=UvData.Object{IndexObj};
|
---|
| 4513 | ObjectData.desable_open=1; % desable the OPEN option in the set_object GUI (editing mode)
|
---|
| 4514 | if isequal(get(handles.edit,'Value'),0)
|
---|
| 4515 | ObjectData.desable_plot=1; % desable the PLOT option in the set_object GUI (editing mode
|
---|
| 4516 | end
|
---|
| 4517 | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters
|
---|
| 4518 | ZBounds=0; % default
|
---|
| 4519 | if isfield(UvData,'ZMin') && isfield(UvData,'ZMax')
|
---|
| 4520 | ZBounds(1)=UvData.ZMin; %minimum for the Z slider
|
---|
| 4521 | ZBounds(2)=UvData.ZMax;%maximum for the Z slider
|
---|
| 4522 | end
|
---|
| 4523 | AxeData.hset_object=set_object(ObjectData,PlotHandles,ZBounds);% call the set_object interface,
|
---|
| 4524 | pos_uvmat=get(huvmat,'Position');
|
---|
| 4525 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 4526 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 4527 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 4528 | set(AxeData.hset_object,'Position',pos_set_object)
|
---|
| 4529 | end
|
---|
| 4530 | hother=findobj('Tag','proj_object');%find all the proj objects
|
---|
| 4531 | for iobj=1:length(hother)
|
---|
| 4532 | if isequal(get(hother(iobj),'Type'),'rectangle')|isequal(get(hother(iobj),'Type'),'patch')
|
---|
| 4533 | set(hother(iobj),'EdgeColor','b')
|
---|
| 4534 | if isequal(get(hother(iobj),'FaceColor'),'m')
|
---|
| 4535 | set(hother(iobj),'FaceColor','b')
|
---|
| 4536 | end
|
---|
| 4537 | elseif isequal(get(hother(iobj),'Type'),'image')
|
---|
| 4538 | Acolor=get(hother(iobj),'CData');
|
---|
| 4539 | Acolor(:,:,1)=zeros(size(Acolor,1),size(Acolor,2));
|
---|
| 4540 | set(hother(iobj),'CData',Acolor);
|
---|
| 4541 | else
|
---|
| 4542 | set(hother(iobj),'Color','b')
|
---|
| 4543 | end
|
---|
| 4544 | set(hother(iobj),'Selected','off')
|
---|
| 4545 | end
|
---|
| 4546 | hother=findobj('Tag','DeformPoint');
|
---|
| 4547 | set(hother,'Color','b');
|
---|
| 4548 | set(hother,'Selected','off')
|
---|
| 4549 | if isfield(ObjectData,'HandlesDisplay')
|
---|
| 4550 | for iview=1:length(ObjectData.HandlesDisplay)
|
---|
| 4551 | if ishandle(ObjectData.HandlesDisplay(iview))
|
---|
| 4552 | uistack(ObjectData.HandlesDisplay(iview),'top')
|
---|
| 4553 | linetype=get(ObjectData.HandlesDisplay(iview),'Type');
|
---|
| 4554 | if isequal(linetype,'line')
|
---|
| 4555 | set(ObjectData.HandlesDisplay(iview),'Color','m'); %set the selected object to magenta color
|
---|
| 4556 | elseif isequal(linetype,'rectangle')
|
---|
| 4557 | set(ObjectData.HandlesDisplay(iview),'EdgeColor','m'); %set the selected object to magenta color
|
---|
| 4558 | elseif isequal(linetype,'patch')
|
---|
| 4559 | set(ObjectData.HandlesDisplay(iview),'FaceColor','m'); %set the selected object to magenta color
|
---|
| 4560 | end
|
---|
| 4561 | SubObjectData=get(ObjectData.HandlesDisplay(iview),'UserData');
|
---|
| 4562 | if isfield(SubObjectData,'SubObject')& ishandle(SubObjectData.SubObject)
|
---|
| 4563 | uistack(SubObjectData.SubObject,'top')
|
---|
| 4564 | for iobj=1:length(SubObjectData.SubObject)
|
---|
| 4565 | hsub=SubObjectData.SubObject(iobj);
|
---|
| 4566 | if isequal(get(hsub,'Type'),'rectangle')
|
---|
| 4567 | set(hsub,'EdgeColor','m'); %set the selected object to magenta color
|
---|
| 4568 | elseif isequal(get(hsub,'Type'),'image')
|
---|
| 4569 | Acolor=get(hsub,'CData');
|
---|
| 4570 | Acolor(:,:,1)=Acolor(:,:,3);
|
---|
| 4571 | set(hsub,'CData',Acolor);
|
---|
| 4572 | else
|
---|
| 4573 | set(hsub,'Color','m')
|
---|
| 4574 | end
|
---|
| 4575 | end
|
---|
| 4576 | end
|
---|
| 4577 | if isfield(SubObjectData,'DeformPoint')& ishandle(SubObjectData.DeformPoint)
|
---|
| 4578 | set(SubObjectData.DeformPoint,'Color','m')
|
---|
| 4579 | end
|
---|
| 4580 | end
|
---|
| 4581 | end
|
---|
| 4582 | end
|
---|
| 4583 |
|
---|
| 4584 | %------------------------------------------------------
|
---|
| 4585 | % --- Executes on button press in Menu/Export/field in workspace.
|
---|
| 4586 | %------------------------------------------------------
|
---|
| 4587 | function MenuExportField_Callback(hObject, eventdata, handles)
|
---|
| 4588 |
|
---|
| 4589 | global CurData
|
---|
| 4590 | huvmat=get(handles.RootPath,'parent');
|
---|
| 4591 | CurData=get(huvmat,'UserData');
|
---|
| 4592 | evalin('base','global CurData')%make CurData global in the workspace
|
---|
| 4593 | display(['UserData of uvmat :'])
|
---|
| 4594 | evalin('base','CurData') %display CurData in the workspace
|
---|
| 4595 | commandwindow;
|
---|
| 4596 |
|
---|
| 4597 | %------------------------------------------------------
|
---|
| 4598 | % --- Executes on button press in Menu/Export/extract figure.
|
---|
| 4599 | %------------------------------------------------------
|
---|
| 4600 | function MenuExport_plot_Callback(hObject, eventdata, handles)
|
---|
| 4601 | huvmat=get(handles.MenuExport_plot,'parent');
|
---|
| 4602 | UvData=get(huvmat,'UserData');
|
---|
| 4603 | hfig=figure;
|
---|
| 4604 | newaxes=copyobj(handles.axes3,hfig);
|
---|
| 4605 | map=colormap(handles.axes3);
|
---|
| 4606 | colormap(map);%transmit the current colormap to the zoom fig
|
---|
| 4607 | colorbar
|
---|
| 4608 |
|
---|
| 4609 |
|
---|
| 4610 | % --------------------------------------------------------------------
|
---|
| 4611 | function Insert_Callback(hObject, eventdata, handles)
|
---|
| 4612 |
|
---|
| 4613 |
|
---|
| 4614 | % --------------------------------------------------------------------
|
---|
| 4615 | function MenuRun_Callback(hObject, eventdata, handles)
|
---|
| 4616 | % --------------------------------------------------------------------
|
---|
| 4617 |
|
---|
| 4618 | % --------------------------------------------------------------------
|
---|
| 4619 | function MenuHelp_Callback(hObject, eventdata, handles)
|
---|
| 4620 | % --------------------------------------------------------------------
|
---|
| 4621 | path_to_uvmat=which ('uvmat');% check the path of uvmat
|
---|
| 4622 | pathelp=fileparts(path_to_uvmat);
|
---|
[36] | 4623 | helpfile=fullfile(pathelp,'uvmat_doc','uvmat_doc.html');
|
---|
| 4624 | if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the sub-directory /uvmat_doc of the UVMAT package')
|
---|
[2] | 4625 | else
|
---|
[36] | 4626 | addpath (fullfile(pathelp,'uvmat_doc'))
|
---|
[2] | 4627 | web(helpfile);
|
---|
| 4628 | end
|
---|
| 4629 |
|
---|
| 4630 | % --------------------------------------------------------------------
|
---|
| 4631 | function MenuOpen_Callback(hObject, eventdata, handles)
|
---|
| 4632 | % --------------------------------------------------------------------
|
---|
| 4633 | % --------------------------------------------------------------------
|
---|
| 4634 | function MenuOpen_1_Callback(hObject, eventdata, handles)
|
---|
| 4635 | % --------------------------------------------------------------------
|
---|
| 4636 | % --------------------------------------------------------------------
|
---|
| 4637 | function MenuExport_Callback(hObject, eventdata, handles)
|
---|
| 4638 | % --------------------------------------------------------------------
|
---|
| 4639 |
|
---|
| 4640 | % --------------------------------------------------------------------
|
---|
| 4641 | function MenuExportMovie_Callback(hObject, eventdata, handles)
|
---|
| 4642 | % --------------------------------------------------------------------
|
---|
| 4643 | set(handles.MenuExportMovie,'BusyAction','queue')% activate the button
|
---|
| 4644 | huvmat=get(handles.run0,'parent');
|
---|
| 4645 | UvData=get(huvmat,'UserData');
|
---|
| 4646 | [xx,xx,FileBase]=read_file_boxes(handles);
|
---|
| 4647 | %read the current input file name
|
---|
| 4648 | prompt = {'movie file name';'frames per second';'frame resolution (*[512x384] pixels)';'axis position relative to the frame';'total frame number (starting from the current uvmat display)'};
|
---|
| 4649 | dlg_title = 'select properties of the output avi movie';
|
---|
| 4650 | num_lines= 1;
|
---|
| 4651 | nbfield_cell=get(handles.last_i,'String');
|
---|
| 4652 | def = {[FileBase '_out.avi'];'10';'1';'[0.03 0.05 0.95 0.92]';'10'};
|
---|
| 4653 | answer = inputdlg(prompt,dlg_title,num_lines,def,'on');
|
---|
| 4654 | aviname=answer{1};
|
---|
| 4655 | fps=str2num(answer{2});
|
---|
| 4656 | % check for existing file with output name aviname
|
---|
| 4657 | if exist(aviname,'file')
|
---|
| 4658 | backup=aviname;
|
---|
| 4659 | testexist=2;
|
---|
| 4660 | while testexist==2
|
---|
| 4661 | backup=[backup '~'];
|
---|
| 4662 | testexist=exist(backup,'file');
|
---|
| 4663 | end
|
---|
| 4664 | [success,message]=copyfile(aviname,backup);%make backup of the existing file
|
---|
| 4665 | if isequal(success,1)
|
---|
| 4666 | delete(aviname)%delete existing file
|
---|
| 4667 | else
|
---|
| 4668 | msgbox_uvmat('ERROR',message)
|
---|
| 4669 | return
|
---|
| 4670 | end
|
---|
| 4671 | end
|
---|
| 4672 | %create avi open
|
---|
| 4673 | aviobj=avifile(aviname,'Compression','None','fps',fps);
|
---|
| 4674 |
|
---|
| 4675 | %display first view for tests
|
---|
| 4676 | newfig=figure;
|
---|
| 4677 | newaxes=copyobj(handles.axes3,newfig);%new plotting axes in the new figure
|
---|
| 4678 | set(newaxes,'Tag','movieaxes')
|
---|
| 4679 | nbpix=[512 384]*str2num(answer{3});
|
---|
| 4680 | set(gcf,'Position',[1 1 nbpix])% resolution XVGA
|
---|
| 4681 | set(newaxes,'Position',eval(answer{4}));
|
---|
| 4682 | map=colormap(handles.axes3);
|
---|
| 4683 | colormap(map);%transmit the current colormap to the zoom fig
|
---|
| 4684 | msgbox_uvmat('INPUT_Y-N',{['adjust figure ' num2str(newfig) ' with its matlab edit menu '] ;...
|
---|
| 4685 | ['then press OK to get the avi movie as a copy of figure ' num2str(newfig) ' display']});
|
---|
| 4686 | UvData.Object{1}.plotaxes=newaxes;% the axis in the new figure becomes the current main plotting axes
|
---|
| 4687 | set(huvmat,'UserData',UvData);
|
---|
| 4688 | increment=str2num(get(handles.increment_scan,'String')); %get the field increment d
|
---|
| 4689 | set(handles.STOP,'Visible','on')
|
---|
| 4690 | set(handles.speed,'Visible','on')
|
---|
| 4691 | set(handles.speed_txt,'Visible','on')
|
---|
| 4692 | set(handles.RunMovie,'BusyAction','queue')
|
---|
| 4693 |
|
---|
| 4694 | imin=str2num(get(handles.i1,'String'));
|
---|
| 4695 | imax=str2num(answer{5});
|
---|
| 4696 | % if isfield(UvData,'Time')
|
---|
| 4697 | htitle=get(newaxes,'Title');
|
---|
| 4698 | xlim=get(newaxes,'XLim');
|
---|
| 4699 | ylim=get(newaxes,'YLim');
|
---|
| 4700 | set(htitle,'Position',[xlim(2)+0.07*(xlim(2)-xlim(1)) ylim(2)-0.05*(ylim(2)-ylim(1)) 0])
|
---|
| 4701 | time_str=get(handles.abs_time,'String');
|
---|
| 4702 | set(htitle,'String',['t=' time_str])
|
---|
| 4703 | set(handles.speed,'Value',1)
|
---|
| 4704 | for i=1:imax
|
---|
| 4705 | if get(handles.speed,'Value')~=0 & isequal(get(handles.MenuExportMovie,'BusyAction'),'queue') % enable STOP command
|
---|
| 4706 | runpm(hObject,eventdata,handles,increment)
|
---|
| 4707 | drawnow
|
---|
| 4708 | time_str=get(handles.abs_time,'String');
|
---|
| 4709 | if ishandle(htitle)
|
---|
| 4710 | set(htitle,'String',['t=' time_str])
|
---|
| 4711 | end
|
---|
| 4712 | mov=getframe(newfig);
|
---|
| 4713 | aviobj=addframe(aviobj,mov);
|
---|
| 4714 | end
|
---|
| 4715 | end
|
---|
| 4716 | aviobj=close(aviobj);
|
---|
| 4717 | UvData.Object{1}.plotaxes=handles.axes3;
|
---|
| 4718 | set(huvmat,'UserData',UvData);
|
---|
| 4719 | msgbox_uvmat('CONFIRMATION',{['movie ' aviname ' created '];['with ' num2str(imax) ' frames']})
|
---|
| 4720 |
|
---|
| 4721 |
|
---|
| 4722 | % ------------------------------------------------------------------
|
---|
| 4723 | function MenuCalib_Callback(hObject, eventdata, handles)
|
---|
| 4724 | set(handles.TOOLS_txt,'Visible','on')
|
---|
| 4725 | set(handles.frame_tools,'Visible','on')
|
---|
| 4726 | set(handles.cal,'Visible','on')
|
---|
| 4727 | set(handles.cal,'Value',1)
|
---|
| 4728 | cal_Callback(hObject,eventdata,handles)
|
---|
| 4729 |
|
---|
| 4730 | % ------------------------------------------------------------------
|
---|
| 4731 | function MenuMask_Callback(hObject, eventdata, handles)
|
---|
| 4732 | set(handles.TOOLS_txt,'Visible','on')
|
---|
| 4733 | set(handles.frame_tools,'Visible','on')
|
---|
| 4734 | set(handles.create,'Visible','on')
|
---|
| 4735 | set(handles.create,'Value',1)
|
---|
| 4736 | set(handles.create,'BackgroundColor',[1 1 0]) %visualise in yellow
|
---|
| 4737 | set(handles.save_mask,'Visible','on')
|
---|
| 4738 | set(handles.masklevel,'Visible','on')
|
---|
| 4739 | if isequal(get(handles.z_index,'Visible'),'on')
|
---|
| 4740 | nb_slice=str2num(get(handles.nb_slice,'String'));
|
---|
| 4741 | for ilist=1:nb_slice
|
---|
| 4742 | list_index{ilist,1}=num2str(ilist);
|
---|
| 4743 | end
|
---|
| 4744 | set(handles.masklevel,'String',list_index)
|
---|
| 4745 | val=str2num(get(handles.z_index,'String'));
|
---|
| 4746 | if val<=nb_slice
|
---|
| 4747 | set(handles.masklevel,'Value',val)
|
---|
| 4748 | end
|
---|
| 4749 | else
|
---|
| 4750 | set(handles.masklevel,'String',{'1'})
|
---|
| 4751 | set(handles.masklevel,'Value',1)
|
---|
| 4752 | end
|
---|
| 4753 | if ishandle(handles.UVMAT_title)
|
---|
| 4754 | delete(handles.UVMAT_title)
|
---|
| 4755 | end
|
---|
| 4756 | huvmat=get(handles.create,'parent');
|
---|
| 4757 | UvData=get(huvmat,'UserData');%read UvData properties stored on the uvmat interface
|
---|
| 4758 | set(handles.zoom,'Value',0)
|
---|
| 4759 | set(handles.zoom,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4760 | set(handles.edit_vect,'Value',0)
|
---|
| 4761 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4762 | set(handles.edit,'Value',0)
|
---|
| 4763 | set(handles.edit,'BackgroundColor',[0.7 0.7 0.7])
|
---|
| 4764 | set(handles.edit_vect,'Value',0)
|
---|
| 4765 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4766 | set(handles.cal,'Value',0)
|
---|
| 4767 | set(handles.cal,'BackgroundColor',[0 1 0])
|
---|
| 4768 |
|
---|
| 4769 | %initiate the GUI set_object
|
---|
| 4770 | data.TITLE='MASK';
|
---|
| 4771 | if isfield(UvData,'CoordType')
|
---|
| 4772 | data.CoordType=UvData.CoordType;
|
---|
| 4773 | end
|
---|
| 4774 | if isfield(UvData,'Mesh')&&~isempty(UvData.Mesh)
|
---|
| 4775 | data.YMax=UvData.Mesh;
|
---|
| 4776 | elseif isfield(UvData.Field,'AX')&&isfield(UvData.Field,'AY')&& isfield(UvData.Field,'A')%only image
|
---|
| 4777 | np=size(UvData.Field.A);
|
---|
| 4778 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/(np(2)-1);
|
---|
| 4779 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/(np(1)-1);
|
---|
| 4780 | data.YMax=max(meshx,meshy);
|
---|
| 4781 | data.DX=max(meshx,meshy);
|
---|
| 4782 | end
|
---|
| 4783 | data.Coord=[0 0 0]; %default
|
---|
| 4784 | PlotHandles=get_plot_handles(handles);%get the handles of the graphic objects setting the plotting parameters
|
---|
| 4785 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface
|
---|
| 4786 | pos_uvmat=get(huvmat,'Position');
|
---|
| 4787 | if isfield(UvData,'SetObjectOrigin')
|
---|
| 4788 | pos_set_object(1:2)=UvData.SetObjectOrigin + pos_uvmat(1:2);
|
---|
| 4789 | pos_set_object(3:4)=UvData.SetObjectSize .* pos_uvmat(3:4);
|
---|
| 4790 | set(hset_object,'Position',pos_set_object)
|
---|
| 4791 | end
|
---|
| 4792 | list_object=get(handles.list_object,'String');
|
---|
| 4793 | if ~isempty(list_object)
|
---|
| 4794 | set(handles.list_object,'Value',length(list_object))
|
---|
| 4795 | end
|
---|
| 4796 | UvData.MouseAction='create_object';
|
---|
| 4797 | set(huvmat,'UserData',UvData);
|
---|
| 4798 |
|
---|
| 4799 | % ------------------------------------------------------------------
|
---|
| 4800 | %-- open the GUI set_grid.fig to create grid
|
---|
| 4801 | function MenuGrid_Callback(hObject, eventdata, handles)
|
---|
| 4802 | set(handles.TOOLS_txt,'Visible','on')
|
---|
| 4803 | set(handles.frame_tools,'Visible','on')
|
---|
| 4804 | grid_Callback(hObject,eventdata,handles)
|
---|
| 4805 |
|
---|
| 4806 | %----------------------------------------------------------------
|
---|
| 4807 | % open the GUI 'series'
|
---|
| 4808 | %----------------------------------------------------------------
|
---|
| 4809 | function MenuSeries_Callback(hObject, eventdata, handles)
|
---|
[40] | 4810 | %-------------------------------------------------------------------
|
---|
[2] | 4811 |
|
---|
| 4812 | [param.FileName]=read_file_boxes(handles);
|
---|
| 4813 | if isequal(get(handles.SubField,'Value'),1)
|
---|
| 4814 | FileName_1=read_file_boxes_1(handles);%
|
---|
| 4815 | if ~isequal(FileName_1,param.FileName)
|
---|
| 4816 | param.FileName_1=FileName_1;
|
---|
| 4817 | end
|
---|
| 4818 | end
|
---|
| 4819 | param.NomType=get(handles.FileIndex,'UserData');
|
---|
| 4820 | param.NomType_1=get(handles.FileIndex_1,'UserData');
|
---|
| 4821 | param.comp_input=get(handles.fix_pair,'Value');
|
---|
| 4822 | huvmat=get(handles.MenuSeries,'parent');
|
---|
| 4823 | UvData=get(huvmat,'UserData');
|
---|
| 4824 | if isfield(UvData,'Time')
|
---|
| 4825 | param.Time=UvData.XmlData.Time;
|
---|
| 4826 | end
|
---|
| 4827 | if isequal(get(handles.scan_i,'Value'),1)
|
---|
| 4828 | param.incr_i=str2num(get(handles.increment_scan,'String'));
|
---|
| 4829 | elseif isequal(get(handles.scan_j,'Value'),1)
|
---|
| 4830 | param.incr_j=str2num(get(handles.increment_scan,'String'));
|
---|
| 4831 | end
|
---|
| 4832 | param.list_fields=get(handles.Fields,'String');% list menu fields
|
---|
| 4833 | param.list_fields(1)=[]; %suppress 'image' option
|
---|
| 4834 | param.index_fields=get(handles.Fields,'Value');% selected string index
|
---|
| 4835 | if param.index_fields>1
|
---|
| 4836 | param.index_fields=param.index_fields-1;
|
---|
| 4837 | end
|
---|
| 4838 | param.list_fields_1=get(handles.Fields_1,'String');% list menu fields
|
---|
| 4839 | param.list_fields_1(1)=[]; %suppress 'image' option
|
---|
| 4840 | param.index_fields_1=get(handles.Fields_1,'Value')-1;% selected string index
|
---|
| 4841 | if param.index_fields_1>1
|
---|
| 4842 | param.index_fields_1=param.index_fields_1-1;
|
---|
| 4843 | end
|
---|
| 4844 | param.civ1=get(handles.civ1,'Value');
|
---|
| 4845 | param.civ2=get(handles.civ2,'Value');
|
---|
| 4846 | param.interp1=get(handles.interp1,'Value');
|
---|
| 4847 | param.interp2=get(handles.interp2,'Value');
|
---|
| 4848 | param.filter1=get(handles.filter1,'Value');
|
---|
| 4849 | param.filter2=get(handles.filter2,'Value');
|
---|
[39] | 4850 | param.menu_coord_str=get(handles.transform_fct,'String');
|
---|
| 4851 | param.menu_coord_val=get(handles.transform_fct,'Value');
|
---|
[2] | 4852 |
|
---|
| 4853 | series(param); %run the series interface
|
---|
| 4854 |
|
---|
| 4855 | % ------------------------------------------------------------------
|
---|
| 4856 | % -- open the GUI civ.fig for civx (PIV)
|
---|
| 4857 | % ------------------------------------------------------------------
|
---|
| 4858 | function MenuPIV_Callback(hObject, eventdata, handles)
|
---|
| 4859 |
|
---|
| 4860 | [FileName,RootPath,filebase,FileIndices,ext,SubDir]=read_file_boxes(handles);
|
---|
[45] | 4861 | num1=stra2num(get(handles.i1,'String'));
|
---|
| 4862 | num2=stra2num(get(handles.i2,'String'));
|
---|
| 4863 | num_a=stra2num(get(handles.j1,'String'));
|
---|
| 4864 | num_b=stra2num(get(handles.j2,'String'));
|
---|
[2] | 4865 | NomType=get(handles.FileIndex,'UserData');
|
---|
| 4866 | ind_opening=1; % default (images): will advice civ1 option by default in the civ interface
|
---|
| 4867 | if isequal(ext,'.nc') || isequal(ext,'.cdf')% netcdf files
|
---|
| 4868 | ind_opening=2;% propose 'fix' as the default option
|
---|
| 4869 | % +read the current netcdf rootfile
|
---|
| 4870 | Data=nc2struct(FileName,[]);
|
---|
| 4871 | if isfield(Data,'fix') & isequal(Data.fix,1)
|
---|
| 4872 | ind_opening=3;
|
---|
| 4873 | end
|
---|
| 4874 | if isfield(Data,'patch') & isequal(Data.patch,1)
|
---|
| 4875 | ind_opening=4;
|
---|
| 4876 | end
|
---|
| 4877 | if isfield(Data,'civ2') & isequal(Data.civ2,1)
|
---|
| 4878 | ind_opening=5;
|
---|
| 4879 | end
|
---|
| 4880 | if isfield(Data,'fix2') & isequal(Data.fix2,1)
|
---|
| 4881 | ind_opening=6;
|
---|
| 4882 | end
|
---|
| 4883 | end
|
---|
| 4884 | varargin{1}=filebase;
|
---|
| 4885 | varargin{2}=NomType;
|
---|
| 4886 | varargin{3}=num1;
|
---|
| 4887 | varargin{4}=num2;
|
---|
| 4888 | varargin{5}=num_a;
|
---|
| 4889 | varargin{6}=num_b;
|
---|
| 4890 | varargin{7}=SubDir;
|
---|
| 4891 | varargin{8}=ind_opening;% A REVOIR +TRANSMETTRE IMADOC INFO
|
---|
| 4892 | varargin{11}=ext;
|
---|
| 4893 | civ(varargin);% interface de civ(not in the uvmat file)
|
---|
| 4894 |
|
---|
| 4895 | % ------------------------------------------------------------------
|
---|
| 4896 | function MenuTools_Callback(hObject, eventdata, handles)
|
---|
| 4897 |
|
---|
| 4898 | % ------------------------------------------------------------------
|
---|
| 4899 | function MenuEdit_Callback(hObject, eventdata, handles)
|
---|
| 4900 |
|
---|
| 4901 | %--------------------------------------------------------------------------
|
---|
| 4902 | function enable_transform(handles,state)
|
---|
[39] | 4903 | set(handles.transform_fct,'Visible',state)
|
---|
[2] | 4904 | set(handles.TRANSFORM_txt,'Visible',state)
|
---|
[39] | 4905 | set(handles.transform_fct,'Visible',state)
|
---|
[2] | 4906 | set(handles.path_transform,'Visible',state)
|
---|
| 4907 | set(handles.pxcmx_txt,'Visible',state)
|
---|
| 4908 | set(handles.pxcmy_txt,'Visible',state)
|
---|
| 4909 | set(handles.pxcm,'Visible',state)
|
---|
| 4910 | set(handles.pycm,'Visible',state)
|
---|
| 4911 |
|
---|
[40] | 4912 | %------------------------------------------------------------------------
|
---|
[2] | 4913 | function MenuEditVectors_Callback(hObject, eventdata, handles)
|
---|
[40] | 4914 | %------------------------------------------------------------------------
|
---|
[2] | 4915 | set(handles.edit_vect,'Visible','on')
|
---|
| 4916 | set(handles.edit_vect,'Value',1)
|
---|
| 4917 | edit_vect_Callback(hObject, eventdata, handles)
|
---|
| 4918 |
|
---|
[40] | 4919 | % --------------------------------------------------------------------
|
---|
| 4920 | function Menupoints_Callback(hObject, eventdata, handles)
|
---|
| 4921 | data.Style='points';
|
---|
| 4922 | data.ProjMode='projection';%default
|
---|
[55] | 4923 | create_object(data,handles)
|
---|
[2] | 4924 |
|
---|
[40] | 4925 | % --------------------------------------------------------------------
|
---|
| 4926 | function Menuline_Callback(hObject, eventdata, handles)
|
---|
| 4927 | % set(handles.create,'Visible','on')
|
---|
| 4928 | % set(handles.create,'Value',1)
|
---|
| 4929 | % LINE_Callback(hObject,eventdata,handles)
|
---|
| 4930 | data.Style='line';
|
---|
| 4931 | data.ProjMode='projection';%default
|
---|
[55] | 4932 | create_object(data,handles)
|
---|
[2] | 4933 |
|
---|
[40] | 4934 | %------------------------------------------------------------------------
|
---|
| 4935 | function Menupolyline_Callback(hObject, eventdata, handles)
|
---|
| 4936 | %------------------------------------------------------------------------
|
---|
| 4937 | data.Style='polyline';
|
---|
| 4938 | data.ProjMode='projection';%default
|
---|
[55] | 4939 | create_object(data,handles)
|
---|
[2] | 4940 |
|
---|
[55] | 4941 | %------------------------------------------------------------------------
|
---|
[40] | 4942 | function Menupolygon_Callback(hObject, eventdata, handles)
|
---|
[55] | 4943 | %------------------------------------------------------------------------
|
---|
[45] | 4944 | data.Style='polygon';
|
---|
| 4945 | data.ProjMode='inside';%default
|
---|
[55] | 4946 | create_object(data,handles)
|
---|
[40] | 4947 |
|
---|
| 4948 | %------------------------------------------------------------------------
|
---|
| 4949 | function Menurectangle_Callback(hObject, eventdata, handles)
|
---|
| 4950 | %------------------------------------------------------------------------
|
---|
| 4951 | data.Style='rectangle';
|
---|
| 4952 | data.ProjMode='inside';%default
|
---|
[55] | 4953 | create_object(data,handles)
|
---|
[40] | 4954 |
|
---|
| 4955 | %------------------------------------------------------------------------
|
---|
| 4956 | function Menuellipse_Callback(hObject, eventdata, handles)
|
---|
| 4957 | %------------------------------------------------------------------------
|
---|
| 4958 | data.Style='ellipse';
|
---|
| 4959 | data.ProjMode='inside';%default
|
---|
[55] | 4960 | create_object(data,handles)
|
---|
[40] | 4961 |
|
---|
| 4962 | % ------------------------------------------------------------------
|
---|
| 4963 | function Menuplane_Callback(hObject, eventdata, handles)
|
---|
| 4964 | % set(handles.create,'Visible','on')
|
---|
| 4965 | % set(handles.create,'Value',1)
|
---|
| 4966 | % PLANE_Callback(hObject,eventdata,handles)
|
---|
| 4967 | data.Style='plane';
|
---|
| 4968 | data.ProjMode='projection';%default
|
---|
| 4969 |
|
---|
[55] | 4970 | create_object(data,handles)
|
---|
| 4971 |
|
---|
[40] | 4972 | % ------------------------------------------------------------------
|
---|
| 4973 | function Menuvolume_Callback(hObject, eventdata, handles)
|
---|
| 4974 | set(handles.create,'Visible','on')
|
---|
| 4975 | set(handles.create,'Value',1)
|
---|
| 4976 | VOLUME_Callback(hObject,eventdata,handles)
|
---|
| 4977 |
|
---|
| 4978 | %------------------------------------------------------------------------
|
---|
| 4979 | function MenuBrowseObject_Callback(hObject, eventdata, handles)
|
---|
| 4980 | %------------------------------------------------------------------------
|
---|
| 4981 | %get the object file
|
---|
| 4982 | [FileName, PathName, filterindex] = uigetfile( ...
|
---|
| 4983 | {'*.xml;*.mat', ' (*.xml,*.mat)';
|
---|
| 4984 | '*.xml', '.xml files '; ...
|
---|
| 4985 | '*.mat', '.mat matlab files '}, ...
|
---|
| 4986 | 'Pick a file',get(handles.RootPath,'String'));
|
---|
| 4987 | fileinput=[PathName FileName];%complete file name
|
---|
| 4988 | testblank=findstr(fileinput,' ');%look for blanks
|
---|
| 4989 | if ~isempty(testblank)
|
---|
| 4990 | msgbox_uvmat('ERROR','forbidden input file name: contain blanks')
|
---|
| 4991 | return
|
---|
| 4992 | end
|
---|
| 4993 | sizf=size(fileinput);
|
---|
| 4994 | if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end
|
---|
| 4995 |
|
---|
| 4996 | %read the file
|
---|
[55] | 4997 | t=xmltree(fileinput);
|
---|
| 4998 | data=convert(t);
|
---|
[40] | 4999 | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters
|
---|
[55] | 5000 | hset_object=findobj(allchild(0),'Name','set_object');
|
---|
| 5001 | if ~isempty(hset_object)
|
---|
| 5002 | delete(hset_object)% delete existing version of set_object
|
---|
| 5003 | end
|
---|
| 5004 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface
|
---|
| 5005 | UvData.MouseAction='create_object';
|
---|
| 5006 | set(handles.uvmat,'UserData',UvData)
|
---|
[40] | 5007 |
|
---|
| 5008 | %------------------------------------------------------------------------
|
---|
[55] | 5009 | function create_object(data,handles)
|
---|
[40] | 5010 | %------------------------------------------------------------------------
|
---|
[55] | 5011 | hset_object=findobj(allchild(0),'Name','set_object');
|
---|
[40] | 5012 | if ~isempty(hset_object)
|
---|
| 5013 | delete(hset_object)% delete existing version of set_object
|
---|
| 5014 | end
|
---|
[55] | 5015 | UvData=get(handles.uvmat,'UserData');
|
---|
[40] | 5016 | if isfield(UvData,'CoordType')
|
---|
| 5017 | data.CoordType=UvData.CoordType;
|
---|
| 5018 | end
|
---|
[55] | 5019 | if isfield(UvData,'Mesh')&&~isempty(UvData.Mesh)
|
---|
[40] | 5020 | data.RangeX=UvData.Mesh;
|
---|
| 5021 | data.RangeY=UvData.Mesh;
|
---|
| 5022 | data.DX=UvData.Mesh;
|
---|
| 5023 | data.DY=UvData.Mesh;
|
---|
[55] | 5024 | elseif isfield(UvData.Field,'AX')&& isfield(UvData.Field,'AY')&& isfield(UvData.Field,'A')%only image
|
---|
[40] | 5025 | np=size(UvData.Field.A);
|
---|
| 5026 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/np(2);
|
---|
| 5027 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/np(1);
|
---|
| 5028 | data.RangeY=max(meshx,meshy);
|
---|
| 5029 | data.RangeX=max(meshx,meshy);
|
---|
| 5030 | data.DX=max(meshx,meshy);
|
---|
| 5031 | end
|
---|
[55] | 5032 | data.Coord=[0 0 0]; %default
|
---|
| 5033 | if isfield(data,'Style') && isequal(data.Style,'line')
|
---|
| 5034 | if isfield(data,'DX')
|
---|
| 5035 | data.Coord=[[0 0 0];[data.DX 0 0]]; %default
|
---|
| 5036 | else
|
---|
| 5037 | data.Coord=[[0 0 0];[1 0 0]]; %default
|
---|
| 5038 | end
|
---|
[40] | 5039 | end
|
---|
| 5040 | %data.ParentButton=handles.create;
|
---|
[55] | 5041 | if ishandle(handles.UVMAT_title)
|
---|
| 5042 | delete(handles.UVMAT_title)%delete the initial display of uvmat if no field has been entered
|
---|
| 5043 | end
|
---|
| 5044 | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters
|
---|
[40] | 5045 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface
|
---|
| 5046 | UvData.MouseAction='create_object';
|
---|
[55] | 5047 | set(handles.uvmat,'UserData',UvData)
|
---|
| 5048 | set(handles.zoom,'Value',0)
|
---|
| 5049 | zoom_Callback(handles.uvmat, [], handles)
|
---|
[40] | 5050 |
|
---|