[387] | 1 | %'uvmat': function associated with the GUI 'uvmat.fig' for images and data field visualization |
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| 2 | %------------------------------------------------------------------------ |
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| 3 | % function huvmat=uvmat(input) |
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| 4 | % |
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| 5 | %OUTPUT |
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| 6 | % huvmat=current handles of the GUI uvmat.fig |
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| 7 | %% |
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| 8 | % |
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| 9 | %INPUT: |
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| 10 | % input: input file name (if character chain), or input image matrix to |
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[526] | 11 | % visualize, or Matlab structure representing netcdf fieldname (with fieldname |
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[387] | 12 | % ListVarName....) |
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| 13 | % |
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| 14 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 15 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, joel.sommeria@legi.grenoble-inp.fr. |
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| 16 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 17 | % This open is part of the toolbox UVMAT. |
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| 18 | % |
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| 19 | % UVMAT is free software; you can redistribute it and/or modify |
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| 20 | % it under the terms of the GNU General Public License as published by |
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| 21 | % the Free Software Foundation; either version 2 of the License, or |
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| 22 | % (at your option) any later version. |
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| 23 | % |
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| 24 | % UVMAT is distributed in the hope that it will be useful, |
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| 25 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 26 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 27 | % GNU General Public License (open UVMAT/COPYING.txt) for more details. |
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| 28 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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| 29 | % |
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[511] | 30 | % Information stored on the interface:(use 'Export/field in workspace' in |
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| 31 | % the menu bar of uvmat to retrieve it) |
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| 32 | % .OpenParam: structure containing parameters defined when uvmat is opened |
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| 33 | % .PosColorbar: position (1x4 vector)of the colorbar (relative to the fig uvmat) |
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| 34 | % .PosGeometryCalib: size of set_object |
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[591] | 35 | % .NbBuiltin: nbre of functions always displayed in TransformName menu |
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[622] | 36 | % .ProjObject: cell array of structures representing the current projection objects, as produced by 'set_object.m'={[]} by default |
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[511] | 37 | % .NewSeries: =0/1 flag telling whether a new field series has been opened |
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| 38 | % .FileName_1: name of the current second field (used to detect a constant field during file scanning) |
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| 39 | % .FileType: current file type, as defined by the fct get_file_type.m) |
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| 40 | % .i1_series,.i2_series,.j1_series,.j1_series: series of i1,i2,j1,j2 indices detected in the input dir,set by the fct find_file_series |
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| 41 | % .MovieObject: current movie object |
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| 42 | % .TimeUnit: unit for time |
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[526] | 43 | % .XmlData: cell array of 1 or 2 structures representing the xml files associated with the input fieldname (containing timing and geometry calibration) |
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[511] | 44 | % .Field: cell array of 1 or 2 structures representing the current input field(s) |
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| 45 | % .PlotAxes: field structure representing the current field plotted on the main axes (used for mouse operations) |
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| 46 | % .HistoAxes: idem for histogram axes |
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[387] | 47 | |
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[713] | 48 | % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% DATA FLOW (for REFRESH_Callback) %%%%%%%%%%%%%%%%%%%%: |
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[387] | 49 | % |
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[406] | 50 | % |
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[651] | 51 | % 1) Input filenames are determined by MenuBrowse (first field), MenuBrowseCampaign |
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[512] | 52 | % (second field), or by the stored file name .FileName_1, or as an input of uvmat. |
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| 53 | % 2) These functions call 'uvmat/display_file_name.m' which detects the file series, and fills the file index boxes |
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| 54 | % 3) Then 'uvmat/update_rootinfo.m' Updates information about a new field series (indices to scan, timing, calibration from an xml file) |
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[526] | 55 | % 4) Then fieldname are opened and visualised by the main sub-function 'uvmat/refresh_field.m' |
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[512] | 56 | % The function first reads the name of the input file(s) (one or two) from the edit boxes of the GUI |
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| 57 | % It then reads the input file(s) with the function read_field.m and perform the following list of operations: |
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[387] | 58 | % |
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[512] | 59 | % %%%%%%%% structure of uvmat/refresh_field.m %%%%%%%% |
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[387] | 60 | % |
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[512] | 61 | % Main input open second input open_1 |
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| 62 | % | | |
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| 63 | % read_field.m read_field.m |
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| 64 | % | | |
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| 65 | % Field{1} Field{2} |
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| 66 | % | | |
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[526] | 67 | % --->transform fct<--- transform (e.g. phys.m) and combine input fieldname |
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[512] | 68 | % | |
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[581] | 69 | % (tps_coeff_field.m) calculate tps coefficients (for filter projection or spatial derivatives). |
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[512] | 70 | % | |
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| 71 | % UvData.Field-------------->histogram |
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| 72 | % _____________|____________ |
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| 73 | % | | |
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[595] | 74 | % proj_field.m proj_field.m project the field on the projection objects (use set_field_list.m) |
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[512] | 75 | % | | |
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| 76 | % UvData.PlotAxes ViewData.PlotAxes (on view_field) |
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| 77 | % | | |
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[526] | 78 | % plot_field.m (uvmat) plot_field.m (view_field) plot the projected fieldname |
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[512] | 79 | % |
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| 80 | % |
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[387] | 81 | %%%%%%%%%%%%%% SCALARS: %%%%%%%%%%%%??%%% |
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| 82 | % scalars are displayed either as an image or countour plot, either as a color of |
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| 83 | % velocity vectors. The scalar values in the first case is represented by |
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| 84 | % UvData.Field.A, and by UvData.Field.C in the second case. The corresponding set of X |
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| 85 | % and Y coordinates are represented by UvData.Field.AX and UvData.Field.AY, and .X and |
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| 86 | % .Y for C (the same as velocity vectors). If A is a nxxny matrix (scalar |
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| 87 | % on a regtular grid), then .AX andf.AY contains only two elements, represneting the |
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| 88 | % coordinates of the four image corners. The scalar name is represented by |
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| 89 | % the strings .AName and/or .CName. |
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| 90 | % If the scalar exists in an input open (image or scalar stored under its |
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| 91 | % name in a netcdf open), it is directly read at the level of Field{1}or Field{2}. |
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| 92 | % Else only its name AName is recorded in Field{i}, and its field is then calculated |
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[650] | 93 | %by the fuction calc_scal after the coordinate transform or after projection on an CheckEditObject |
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[387] | 94 | |
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| 95 | % Properties attached to plotting figures (standard Matlab properties): |
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| 96 | % 'CurrentAxes'= gca or get(gcf,'CurrentAxes'); |
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| 97 | % 'CurrentPoint'=get(gcf,'CurrentPoint'): figure coordinates of the point over which the mouse is positioned |
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| 98 | % 'CurrentCharacter'=get(gcf,'CurrentCharacter'): last character typed over the figure where the mouse is positioned |
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| 99 | % 'WindowButtonMotionFcn': function permanently called by mouse motion over the figure |
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| 100 | % 'KeyPressFcn': function called by pressing a key on the key board |
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| 101 | % 'WindowButtonDownFcn': function called by pressing the mouse over the figure |
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| 102 | % 'WindowButtonUpFcn': function called by releasing the mouse pressure over the figure |
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| 103 | |
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| 104 | % Properties attached to plotting axes: |
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| 105 | % 'CurrentPoint'=get(gca,'CurrentPoint'); (standard Matlab) same as for the figure, but position in plot coordinates. |
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| 106 | % AxeData:=get(gca,'UserData'); |
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| 107 | % AxeData.Drawing = create: create a new object |
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| 108 | % = deform: modify an existing object by moving its defining create |
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| 109 | % = off: no current drawing action |
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| 110 | % = translate: translate an existing object |
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| 111 | % = calibration: move a calibration point |
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| 112 | % = CheckZoom: isolate a subregion for CheckZoom in=1 if an object is being currently drawn, 0 else (set to 0 by releasing mouse button) |
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[650] | 113 | % .CurrentOrigin: Origin of a curently drawn CheckEditObject |
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[387] | 114 | % .CurrentLine: currently drawn menuline (A REVOIR) |
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[650] | 115 | % .CurrentObject: handle of the currently drawn CheckEditObject |
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[387] | 116 | % .CurrentRectZoom: current rectangle used for CheckZoom |
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| 117 | |
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| 118 | % Properties attached to projection objects (create, menuline, menuplane...): |
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| 119 | % 'Tag'='proj_object': for all projection objects |
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| 120 | % ObjectData.Type=...: style of projection object: |
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| 121 | % .ProjMode |
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| 122 | % .Coord: defines the position of the object |
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| 123 | % .XMin,YMin.... |
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| 124 | % .XMax,YMax.... |
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| 125 | % .DX,DY,DZ |
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| 126 | % .Phi, .Theta, .Psi : Euler angles |
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| 127 | % .X,.Y,.U,.V.... : field data projected on the object |
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[622] | 128 | % .IndexObj: index in the list of UvData.ProjObject |
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[387] | 129 | %during plotting |
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| 130 | % .plotaxes: handles of the current axes used to plot the result of field projection on the object |
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| 131 | % .plothandle: vector of handle(s) of the object graphic represnetation in all the opened plotting axes |
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| 132 | % To each projection object #iobj, corresponds an axis |
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| 133 | % Object{iobj}.plotaxes and nbobj representation graphs Object{iobj}.plothandles(:) (where nbobj is the |
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| 134 | % nbre of current objects opened in uvmat. Note that Object{iobj}.plothandles(iobj)=[] : an object is not represented in its own projection field; |
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| 135 | |
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| 136 | %------------------------------------------------------------------------ |
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| 137 | %------------------------------------------------------------------------ |
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[406] | 138 | % I - MAIN FUNCTION uvmat |
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[387] | 139 | %------------------------------------------------------------------------ |
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| 140 | %------------------------------------------------------------------------ |
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| 141 | function varargout = uvmat(varargin) |
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| 142 | |
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| 143 | % Begin initialization code - DO NOT EDIT |
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| 144 | gui_Singleton = 1; |
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| 145 | gui_State = struct('gui_Name', mfilename, ... |
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| 146 | 'gui_Singleton', gui_Singleton, ... |
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| 147 | 'gui_OpeningFcn', @uvmat_OpeningFcn, ... |
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| 148 | 'gui_OutputFcn', @uvmat_OutputFcn, ... |
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| 149 | 'gui_LayoutFcn', [], ... |
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| 150 | 'gui_Callback', []); |
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| 151 | if nargin && ischar(varargin{1})&& ~isempty(regexp(varargin{1},'_Callback','once')) |
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| 152 | gui_State.gui_Callback = str2func(varargin{1}); |
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| 153 | end |
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| 154 | |
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| 155 | if nargout |
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| 156 | varargout{1:nargout} = gui_mainfcn(gui_State, varargin{:}); |
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| 157 | else |
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| 158 | gui_mainfcn(gui_State, varargin{:}); |
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| 159 | end |
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| 160 | % End initialization code - DO NOT EDIT |
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| 161 | |
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| 162 | %------------------------------------------------------------------------ |
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| 163 | % --- Executes just before the GUI uvmat is made visible. |
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| 164 | function uvmat_OpeningFcn(hObject, eventdata, handles, input ) |
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| 165 | %------------------------------------------------------------------------ |
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| 166 | |
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| 167 | %% Choose default command menuline output for uvmat (standard GUI) |
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| 168 | handles.output = hObject; |
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| 169 | |
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| 170 | %% Update handles structure (standard GUI) |
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| 171 | guidata(hObject, handles); |
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| 172 | |
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[507] | 173 | %% add the path to uvmat (useful if uvmat has been opened in the working directory and a working directory change occured) |
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| 174 | path_uvmat=fileparts(which('uvmat')); |
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| 175 | |
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[609] | 176 | %% set the position of the GUI, colorbar and ancillary GUIs: |
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| 177 | set(hObject,'Units','pixels')% |
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| 178 | set(0,'Units','pixels'); |
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| 179 | ScreenSize=get(0,'ScreenSize');%size of the current screen |
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| 180 | Width=1050; |
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| 181 | Height=700; |
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| 182 | %adjust to screen size (reduced by a min margin) |
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| 183 | RescaleFactor=min((ScreenSize(3)-80)/Width,(ScreenSize(4)-80)/Height); |
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| 184 | if RescaleFactor>1 |
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| 185 | RescaleFactor=RescaleFactor/2+1/2; %reduce the rescale factor to provide an increased margin for a big screen |
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| 186 | end |
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| 187 | Width=Width*RescaleFactor; |
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| 188 | Height=Height*RescaleFactor; |
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| 189 | LeftX=80*RescaleFactor;%position of the left fig side, in pixels (put to the left side, with some margin) |
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| 190 | LowY=round(ScreenSize(4)/2-Height/2); % put at the middle height on the screen |
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| 191 | set(hObject,'Position',[LeftX LowY Width Height]) |
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[644] | 192 | UvData.OpenParam.PosColorbar=[0.80 0.02 0.018 0.445]; |
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[672] | 193 | % UvData.OpenParam.PosGeometryCalib=[0.95 -0.03 0.28 1 ];%position for geometry_calib |
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[387] | 194 | AxeData.LimEditBox=1; %initialise AxeData |
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[511] | 195 | set(handles.PlotAxes,'UserData',AxeData) |
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[646] | 196 | % position of table Coord_y |
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| 197 | set(handles.Coord_y,'Unit','pixel') |
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| 198 | Pos=get(handles.Coord_y,'Position'); |
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| 199 | set(handles.Coord_y,'Unit','normalized') |
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| 200 | set(handles.Coord_y,'ColumnWidth',{Pos(3)}) |
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| 201 | set(handles.Coord_y,'ColumnFormat',{'char'}) |
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| 202 | set(handles.Coord_y,'ColumnEditable',false) |
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| 203 | set(handles.Coord_y,'ColumnName',{''}) |
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[387] | 204 | |
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| 205 | %% set functions for the mouse and keyboard |
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[681] | 206 | set(hObject,'WindowKeyPressFcn',{'keyboard_callback',handles})%set keyboard action function |
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[387] | 207 | set(hObject,'WindowButtonMotionFcn',{'mouse_motion',handles})%set mouse action functio |
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| 208 | set(hObject,'WindowButtonDownFcn',{'mouse_down'})%set mouse click action function |
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| 209 | set(hObject,'WindowButtonUpFcn',{'mouse_up',handles}) |
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| 210 | set(hObject,'DeleteFcn',{@closefcn})% |
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[644] | 211 | set(hObject,'ResizeFcn',{@ResizeFcn,handles})% |
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[710] | 212 | % set(handles.RootPath,'ButtonDownFcn',{'@mouse_down_control'})%set mouse click action function |
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[387] | 213 | |
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[511] | 214 | %% initialisation |
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[526] | 215 | set(handles.FieldName,'Value',1) |
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| 216 | set(handles.FieldName,'string',{''}) |
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[622] | 217 | UvData.ProjObject={[]}; |
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[387] | 218 | |
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| 219 | %% TRANSFORM menu: builtin fcts |
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[515] | 220 | transform_menu={'';'sub_field';'phys';'phys_polar'}; |
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[507] | 221 | UvData.OpenParam.NbBuiltin=numel(transform_menu); %number of functions |
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| 222 | transform_path=fullfile(path_uvmat,'transform_field'); |
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[528] | 223 | path_list=cell(UvData.OpenParam.NbBuiltin,1); |
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[507] | 224 | path_list{1}=''; |
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[523] | 225 | for ilist=2:UvData.OpenParam.NbBuiltin |
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| 226 | path_list{ilist}=transform_path; % set transform_path to the path_list |
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| 227 | end |
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[387] | 228 | |
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[591] | 229 | %% load the list of previously browsed files in menus Open, Open_1 and TransformName |
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[671] | 230 | dir_perso=prefdir; % path to the directory .matlab containing the personal data of the current user |
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| 231 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat');% personal data file uvmat_perso.mat' in .matlab |
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| 232 | if exist(profil_perso,'file')% if the file exists |
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| 233 | h=load (profil_perso); % open the personal file |
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| 234 | if isfield(h,'MenuFile')% load the saved menu of previously opened files |
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| 235 | for ifile=1:min(length(h.MenuFile),5) |
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| 236 | set(handles.(['MenuFile_' num2str(ifile)]),'Label',h.MenuFile{ifile}); |
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| 237 | end |
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| 238 | end |
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| 239 | if isfield(h,'MenuCampaign')% load the saved menu of previously opened campaigns |
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| 240 | for ifile=1:min(length(h.MenuCampaign),5) |
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| 241 | set(handles.(['MenuCampaign_' num2str(ifile)]),'Label',h.MenuCampaign{ifile}); |
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| 242 | end |
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| 243 | end |
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| 244 | if isfield(h,'RootPath') |
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| 245 | set(handles.RootPath,'UserData',h.RootPath); %store the previous campaign in the UserData of RootPath |
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| 246 | end |
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| 247 | if isfield(h,'transform_fct') && iscell(h.transform_fct) % load the menu of transform fct set by user |
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| 248 | for ilist=1:length(h.transform_fct); |
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| 249 | if exist(h.transform_fct{ilist},'file') |
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| 250 | [path,file]=fileparts(h.transform_fct{ilist}); |
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| 251 | transform_menu=[transform_menu; {file}]; |
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| 252 | path_list=[path_list; {path}]; |
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| 253 | end |
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| 254 | end |
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| 255 | end |
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| 256 | end |
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[523] | 257 | transform_menu=[transform_menu;{'more...'}];%append the option more.. to the menu |
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[591] | 258 | set(handles.TransformName,'String',transform_menu)% display the menu of transform fcts |
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| 259 | set(handles.TransformName,'UserData',path_list)% store the corresponding list of path in UserData of uicontrol transform_fct |
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| 260 | set(handles.TransformPath,'String','') |
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| 261 | set(handles.TransformPath,'UserData',[]) |
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[387] | 262 | |
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| 263 | %% case of an input argument for uvmat |
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| 264 | testinputfield=0; |
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| 265 | inputfile=[]; |
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| 266 | Field=[]; |
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| 267 | if exist('input','var') |
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| 268 | if ishandle(handles.UVMAT_title) |
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| 269 | delete(handles.UVMAT_title) |
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| 270 | end |
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| 271 | if isstruct(input) |
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| 272 | if isfield(input,'InputFile') |
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| 273 | inputfile=input.InputFile; |
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| 274 | end |
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| 275 | if isfield(input,'TimeIndex') |
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| 276 | set(handles.i1,num2str(input.TimeIndex)) |
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| 277 | end |
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| 278 | if isfield(input,'FieldsString') |
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| 279 | UvData.FieldsString=input.FieldsString; |
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| 280 | end |
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| 281 | elseif ischar(input)% file name introduced as input |
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| 282 | inputfile=input; |
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| 283 | elseif isnumeric(input)%simple matrix introduced as input |
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| 284 | sizinput=size(input); |
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| 285 | if sizinput(1)<=1 || sizinput(2)<=1 |
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| 286 | msgbox_uvmat('ERROR','bad input for uvmat: file name, structure or numerical matrix accepted') |
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| 287 | return |
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| 288 | end |
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| 289 | UvData.Field.ListVarName={'A','coord_y','coord_x'}; |
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| 290 | UvData.Field.VarDimName={{'coord_y','coord_x'},'cord_y','coord_x'}; |
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| 291 | UvData.Field.A=input; |
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| 292 | UvData.Field.coord_x=[0.5 size(input,2)-0.5]; |
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| 293 | UvData.Field.coord_y=[size(input,1)-0.5 0.5]; |
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| 294 | testinputfield=1; |
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| 295 | end |
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| 296 | else |
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[476] | 297 | %% check the path and date of modification of all functions in uvmat |
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| 298 | path_to_uvmat=which ('uvmat');% check the path detected for source file uvmat |
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| 299 | [infomsg,date_str,svn_info]=check_files;%check the path of the functions called by uvmat.m |
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| 300 | date_str=['last modification: ' date_str]; |
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| 301 | if ishandle(handles.UVMAT_title) |
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| 302 | set(handles.UVMAT_title,'String',... |
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| 303 | [{'Copyright LEGI UMR 5519 /CNRS-UJF-Grenoble INP, 2010'};... |
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| 304 | {'GNU General Public License'};... |
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| 305 | {path_to_uvmat};... |
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| 306 | {date_str};... |
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| 307 | infomsg]); |
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| 308 | end |
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[387] | 309 | end |
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| 310 | set(handles.uvmat,'UserData',UvData) |
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| 311 | if ~isempty(inputfile) |
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| 312 | %%%%% display the input field %%%%%%% |
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[406] | 313 | display_file_name(handles,inputfile) |
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[387] | 314 | %%%%%%% |
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| 315 | end |
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| 316 | |
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| 317 | set_vec_col_bar(handles) %update the display of color code for vectors |
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| 318 | |
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| 319 | %------------------------------------------------------------------------ |
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| 320 | % --- Outputs from this function are returned to the command menuline. |
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| 321 | function varargout = uvmat_OutputFcn(hObject, eventdata, handles) |
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[710] | 322 | %------------------------------------------------------------------------ |
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[387] | 323 | varargout{1} = handles.output;% the only output argument is the handle to the GUI figure |
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| 324 | |
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| 325 | %------------------------------------------------------------------------ |
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[402] | 326 | % --- executed when closing uvmat: delete or desactivate the associated figures if exist |
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| 327 | function closefcn(gcbo,eventdata) |
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[387] | 328 | %------------------------------------------------------------------------ |
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[710] | 329 | % delete GUI 'view_field' if detected |
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[402] | 330 | hh=findobj(allchild(0),'tag','view_field'); |
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| 331 | if ~isempty(hh) |
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| 332 | delete(hh) |
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| 333 | end |
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[710] | 334 | % delete GUI 'geometry_calib' if detected |
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[402] | 335 | hh=findobj(allchild(0),'tag','geometry_calib'); |
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| 336 | if ~isempty(hh) |
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| 337 | delete(hh) |
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| 338 | end |
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[710] | 339 | % desable set_object editing action if detected |
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[402] | 340 | hh=findobj(allchild(0),'tag','set_object'); |
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| 341 | if ~isempty(hh) |
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| 342 | hhh=findobj(hh,'tag','PLOT'); |
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| 343 | set(hhh,'enable','off') |
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| 344 | end |
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[710] | 345 | %delete the bowser if detected |
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| 346 | hh=findobj(allchild(0),'tag','browser'); |
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| 347 | if ~isempty(hh) |
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| 348 | delete(hh) |
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| 349 | end |
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[402] | 350 | |
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| 351 | %------------------------------------------------------------------------ |
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[644] | 352 | %--- activated when resizing the GUI view_field |
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| 353 | function ResizeFcn(gcbo,eventdata,handles) |
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| 354 | %------------------------------------------------------------------------ |
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| 355 | set(handles.uvmat,'Units','pixels') |
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| 356 | size_fig=get(handles.uvmat,'Position'); |
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| 357 | ColumnWidth=max(150,0.18*size_fig(3)); |
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| 358 | ColumnWidth=min(ColumnWidth,250); % width of the right side display column, between 150 and 250, depending on the fig width |
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| 359 | |
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| 360 | %% position of panel InputFile |
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[646] | 361 | set(handles.InputFile,'Units','pixels') |
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[644] | 362 | pos_InputFile=get(handles.InputFile,'Position');% [lower x lower y width height] for text_display |
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| 363 | pos_InputFile(1)=0; |
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| 364 | pos_InputFile(2)=size_fig(4)-pos_InputFile(4); % set frame InputFile to the top of the fig |
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| 365 | pos_InputFile(3)=size_fig(3); |
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| 366 | set(handles.InputFile,'Position',pos_InputFile);% [lower x lower y width height] for text_display |
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| 367 | |
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[690] | 368 | %% reset position of text_display and TableDisplay |
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| 369 | % if strcmp(get(handles.TableDisplay,'Visible'),'off') |
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[646] | 370 | set(handles.text_display,'Units','pixels') |
---|
[644] | 371 | pos_1=get(handles.text_display,'Position');% [lower x lower y width height] for text_display |
---|
| 372 | pos_1(3)=1.2*ColumnWidth; |
---|
| 373 | pos_1(1)=size_fig(3)-pos_1(3); % set text display to the right of the fig |
---|
| 374 | pos_1(2)=size_fig(4)-pos_InputFile(4)-pos_1(4); % set text display to the top of the fig |
---|
| 375 | set(handles.text_display,'Position',pos_1) |
---|
| 376 | % reset position of TableDisplay |
---|
[690] | 377 | % else |
---|
| 378 | % set(handles.TableDisplay,'Units','pixels') |
---|
| 379 | % pos_1=get(handles.TableDisplay,'Position'); |
---|
| 380 | % pos_1(3)=1.2*ColumnWidth; |
---|
| 381 | % pos_1(1)=size_fig(3)-pos_1(3); |
---|
| 382 | % pos_1(2)=size_fig(4)-pos_InputFile(4)-pos_1(4); |
---|
[644] | 383 | set(handles.TableDisplay,'Position',pos_1) |
---|
[690] | 384 | % reset position of CheckTable |
---|
| 385 | set(handles.CheckTable,'Unit','pixels') |
---|
| 386 | pos_CheckTable=get(handles.CheckTable,'Position');% [lower x lower y width height] for CheckHold |
---|
| 387 | pos_CheckTable(1)=pos_1(1)-pos_CheckTable(3); % set 'CheckHold' to the right of the fig |
---|
| 388 | pos_CheckTable(2)=pos_InputFile(2)-pos_CheckTable(4); % set 'CheckHold' to the lower edge of text display |
---|
| 389 | set(handles.CheckTable,'Position',pos_CheckTable) |
---|
| 390 | % end |
---|
[644] | 391 | |
---|
| 392 | %% reset position of CheckHold |
---|
| 393 | % pos_CheckHold=get(handles.CheckHold,'Position');% [lower x lower y width height] for CheckHold |
---|
| 394 | % pos_CheckHold(1)=size_fig(3)-pos_CheckHold(3); % set 'CheckHold' to the right of the fig |
---|
| 395 | % pos_CheckHold(2)=pos_1(2)-pos_CheckHold(4); % set 'CheckHold' to the lower edge of text display |
---|
| 396 | % set(handles.CheckHold,'Position',pos_CheckHold) |
---|
| 397 | |
---|
| 398 | %% reset position of Coordinates |
---|
[646] | 399 | set(handles.Coordinates,'Units','pixels') |
---|
[644] | 400 | pos_2=get(handles.Coordinates,'Position');% [lower x lower y width height] for frame 'Coordinates' |
---|
| 401 | pos_2(3)=ColumnWidth; |
---|
| 402 | pos_2(1)=size_fig(3)-pos_2(3); % set 'Coordinates' to the right of the fig |
---|
| 403 | pos_2(2)=pos_1(2)-pos_2(4); % set 'Coordinates' to the lower edge of text display, allowing a margin for CheckHold |
---|
| 404 | set(handles.Coordinates,'Position',pos_2) |
---|
| 405 | |
---|
| 406 | %% reset position of Scalar |
---|
[646] | 407 | set(handles.Scalar,'Units','pixels') |
---|
[644] | 408 | pos_3=get(handles.Scalar,'Position'); % [lower x lower y width height] for frame 'Scalar' |
---|
| 409 | pos_3(3)=ColumnWidth; |
---|
| 410 | pos_3(1)=size_fig(3)-pos_3(3); % set 'Scalar' to the right of the fig |
---|
| 411 | if strcmp(get(handles.Scalar,'Visible'),'on') |
---|
| 412 | pos_3(2)=pos_2(2)-pos_3(4); % set 'Scalar' to the lower edge of frame 'Coordinates' if visible |
---|
| 413 | else |
---|
| 414 | pos_3(2)=pos_2(2);% set 'Scalar' to the lower edge of frame 'text display' if unvisible |
---|
| 415 | end |
---|
| 416 | set(handles.Scalar,'Position',pos_3) |
---|
| 417 | |
---|
| 418 | %% reset position of Vectors |
---|
| 419 | set(handles.Vectors,'Units','pixels') |
---|
| 420 | pos_4=get(handles.Vectors,'Position'); |
---|
| 421 | pos_4(3)=ColumnWidth; |
---|
| 422 | pos_4(1)=size_fig(3)-pos_4(3); |
---|
| 423 | if strcmp(get(handles.Vectors,'visible'),'on') |
---|
| 424 | pos_4(2)=pos_3(2)-pos_4(4); |
---|
| 425 | else |
---|
| 426 | pos_4(2)=pos_3(2); |
---|
| 427 | end |
---|
| 428 | set(handles.Vectors,'Position',pos_4) |
---|
| 429 | |
---|
| 430 | %% reset position and scale of axis |
---|
| 431 | pos(1)=0.2*size_fig(3)+35; |
---|
| 432 | pos(2)=35; |
---|
| 433 | pos(3)=0.77*size_fig(3)-1.2*ColumnWidth; |
---|
| 434 | pos(4)=size_fig(4)-60; |
---|
[646] | 435 | set(handles.PlotAxes,'Units','pixels') |
---|
[644] | 436 | set(handles.PlotAxes,'Position',pos) |
---|
[713] | 437 | set(handles.PlotAxes,'Units','normalized') |
---|
[644] | 438 | |
---|
| 439 | |
---|
[402] | 440 | %------------------------------------------------------------------------ |
---|
[644] | 441 | %------------------------------------------------------------------------ |
---|
[387] | 442 | % II - FUNCTIONS FOR INTRODUCING THE INPUT FILES |
---|
| 443 | % automatically sets the global properties when the rootfile name is introduced |
---|
| 444 | % then activate the view-field action if selected |
---|
| 445 | % it is activated either by clicking on the RootPath window or by the |
---|
| 446 | % browser |
---|
| 447 | %------------------------------------------------------------------------ |
---|
| 448 | %------------------------------------------------------------------------ |
---|
| 449 | % --- Executes on the menu Open/Browse... |
---|
| 450 | % search the files, recognize their type according to their name and fill the rootfile input windows |
---|
| 451 | function MenuBrowse_Callback(hObject, eventdata, handles) |
---|
| 452 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
[609] | 453 | oldfile=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
---|
[576] | 454 | if isempty(oldfile) %loads the previously stored file name and set it as default in the file_input box |
---|
| 455 | oldfile=get(handles.RootPath,'UserData'); |
---|
[387] | 456 | end |
---|
[651] | 457 | fileinput=uigetfile_uvmat('pick an input file',oldfile); |
---|
[704] | 458 | hh=dir(fileinput); |
---|
| 459 | if numel(hh)>1 |
---|
| 460 | msgbox_uvmat('ERROR','invalid input, probably a broken link'); |
---|
| 461 | else |
---|
[611] | 462 | |
---|
[710] | 463 | %% display the selected field and related information |
---|
| 464 | if ~isempty(fileinput) |
---|
| 465 | set(handles.SubField,'Value',0) |
---|
| 466 | desable_subfield(handles) |
---|
| 467 | display_file_name(handles,fileinput) |
---|
| 468 | end |
---|
[606] | 469 | end |
---|
[387] | 470 | |
---|
| 471 | % ----------------------------------------------------------------------- |
---|
[651] | 472 | % --- Open again the file whose name has been recorded in MenuFile_1 |
---|
| 473 | function MenuFile_Callback(hObject, eventdata, handles) |
---|
| 474 | %------------------------------------------------------------------------ |
---|
| 475 | fileinput=get(hObject,'Label'); |
---|
[714] | 476 | set(handles.SubField,'Value',0) |
---|
| 477 | desable_subfield(handles) |
---|
| 478 | errormsg=display_file_name( handles,fileinput); |
---|
| 479 | if ~isempty(errormsg) |
---|
| 480 | set(hObject,'Label','') |
---|
| 481 | MenuFile=[{get(handles.MenuFile_1,'Label')};{get(handles.MenuFile_2,'Label')};... |
---|
| 482 | {get(handles.MenuFile_3,'Label')};{get(handles.MenuFile_4,'Label')};{get(handles.MenuFile_5,'Label')}]; |
---|
| 483 | str_find=strcmp(get(hObject,'Label'),MenuFile); |
---|
| 484 | MenuFile(str_find)=[];% suppress the input file to the list |
---|
| 485 | for ifile=1:numel(MenuFile) |
---|
| 486 | set(handles.(['MenuFile_' num2str(ifile)]),'Label',MenuFile{ifile}); |
---|
| 487 | end |
---|
| 488 | end |
---|
[651] | 489 | |
---|
| 490 | % ----------------------------------------------------------------------- |
---|
[569] | 491 | % --- Executes on the menu Open/Browse campaign... |
---|
[651] | 492 | % --- search the file inside a campaign, using the GUI browse_data |
---|
| 493 | % ----------------------------------------------------------------------- |
---|
[569] | 494 | function MenuBrowseCampaign_Callback(hObject, eventdata, handles) |
---|
[651] | 495 | set(handles.MenuOpenCampaign,'ForegroundColor',[1 1 0]) |
---|
| 496 | drawnow |
---|
[576] | 497 | RootPath=get(handles.RootPath,'String'); |
---|
| 498 | if isempty(RootPath) |
---|
| 499 | RootPath=get(handles.RootPath,'UserData');%use Rootpath recored from the personal file at uvmat opening |
---|
| 500 | end |
---|
| 501 | CampaignPath=fileparts(fileparts(RootPath)); |
---|
[651] | 502 | DirFull=uigetfile_uvmat('define this path as the Campaign folder:',CampaignPath,'uigetdir'); |
---|
| 503 | %DirFull = uigetdir(CampaignPath,'Select a Campaign dir, then press OK'); |
---|
| 504 | if isempty(DirFull) |
---|
[569] | 505 | return |
---|
| 506 | end |
---|
| 507 | OutPut=browse_data(DirFull);% open the GUI browse_data to get select a campaign dir, experiment and device |
---|
| 508 | if ~isfield(OutPut,'Campaign') |
---|
| 509 | return |
---|
| 510 | end |
---|
[651] | 511 | DirName=fullfile(OutPut.Campaign,OutPut.Experiment{1},OutPut.DataSeries{1}); |
---|
| 512 | ListStruct=dir(DirName); %list files and the dir DataSeries |
---|
| 513 | % select the first appropriate file in the dir |
---|
| 514 | FileName=''; |
---|
| 515 | for ilist=1:numel(ListStruct) |
---|
| 516 | if ~isequal(ListStruct(ilist).isdir,1)%look for files, not dir |
---|
| 517 | FileName=ListStruct(ilist).name; |
---|
[569] | 518 | FileType=get_file_type(fullfile(DirName,FileName)); |
---|
| 519 | switch FileType |
---|
| 520 | case {'image','multimage','civx','civdata','netcdf'} |
---|
[651] | 521 | break |
---|
[569] | 522 | end |
---|
| 523 | end |
---|
| 524 | end |
---|
[651] | 525 | if isempty(FileName) |
---|
| 526 | msgbox_uvmat('ERROR',['no appropriate input file in the DataSeries folder ' fullfile(DirName)]) |
---|
| 527 | return |
---|
| 528 | end |
---|
[569] | 529 | |
---|
[651] | 530 | %% update the list of campaigns in the menubar |
---|
| 531 | MenuCampaign=[{get(handles.MenuCampaign_1,'Label')};{get(handles.MenuCampaign_2,'Label')};... |
---|
| 532 | {get(handles.MenuCampaign_3,'Label')};{get(handles.MenuCampaign_4,'Label')};{get(handles.MenuCampaign_5,'Label')}]; |
---|
| 533 | check_dir=isempty(find(strcmp(DirFull,MenuCampaign))); |
---|
| 534 | if check_dir %insert the new campaign in the list if it is not found |
---|
| 535 | MenuCampaign(end)=[]; %suppress the last item |
---|
| 536 | MenuCampaign=[{DirFull};MenuCampaign];%insert the new campaign |
---|
| 537 | for ilist=1:numel(MenuCampaign) |
---|
| 538 | set(handles.(['MenuCampaign_' num2str(ilist)]),'Label',MenuCampaign{ilist}) |
---|
| 539 | end |
---|
| 540 | % save the list for future opening: |
---|
| 541 | dir_perso=prefdir; |
---|
| 542 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 543 | if exist(profil_perso,'file') |
---|
| 544 | save (profil_perso,'MenuCampaign','RootPath','-append'); %store the file names for future opening of uvmat |
---|
| 545 | else |
---|
| 546 | save (profil_perso,'MenuCampaign','RootPath','-V6'); %store the file names for future opening of uvmat |
---|
| 547 | end |
---|
| 548 | end |
---|
| 549 | |
---|
[569] | 550 | %% display the selected field and related information |
---|
| 551 | display_file_name( handles,fullfile(DirName,FileName)) |
---|
| 552 | |
---|
[651] | 553 | set(handles.MenuOpenCampaign,'ForegroundColor',[0 0 0]) |
---|
[387] | 554 | |
---|
| 555 | % ----------------------------------------------------------------------- |
---|
[651] | 556 | % --- Open again as second field the file whose name has been recorded in MenuFile_1 |
---|
[387] | 557 | % ----------------------------------------------------------------------- |
---|
[651] | 558 | function MenuCampaign_Callback(hObject, eventdata, handles) |
---|
[387] | 559 | |
---|
[651] | 560 | set(handles.MenuOpenCampaign,'ForegroundColor',[1 1 0]) |
---|
| 561 | OutPut=browse_data(get(hObject,'Label'));% open the GUI browse_data to get select a campaign dir, experiment and device |
---|
[569] | 562 | if ~isfield(OutPut,'Campaign') |
---|
| 563 | return |
---|
| 564 | end |
---|
[651] | 565 | DirName=fullfile(OutPut.Campaign,OutPut.Experiment{1},OutPut.DataSeries{1}); |
---|
[569] | 566 | hdir=dir(DirName); %list files and dirs |
---|
[672] | 567 | FileName=''; |
---|
[569] | 568 | for ilist=1:numel(hdir) |
---|
| 569 | if ~isequal(hdir(ilist).isdir,1)%look for files, not dir |
---|
| 570 | FileName=hdir(ilist).name; |
---|
| 571 | FileType=get_file_type(fullfile(DirName,FileName)); |
---|
| 572 | switch FileType |
---|
| 573 | case {'image','multimage','civx','civdata','netcdf'} |
---|
| 574 | break |
---|
| 575 | end |
---|
| 576 | end |
---|
| 577 | end |
---|
[672] | 578 | if isempty(FileName) |
---|
| 579 | msgbox_uvmat('ERROR','no valid input file in the selected directory') |
---|
| 580 | else |
---|
[651] | 581 | display_file_name(handles,fullfile(DirName,FileName)) |
---|
[672] | 582 | end |
---|
[651] | 583 | set(handles.MenuOpenCampaign,'ForegroundColor',[0 0 0]) |
---|
[569] | 584 | |
---|
[402] | 585 | %------------------------------------------------------------------------ |
---|
| 586 | % --- Called by action in FileIndex edit box |
---|
| 587 | function FileIndex_Callback(hObject, eventdata, handles) |
---|
| 588 | %------------------------------------------------------------------------ |
---|
| 589 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(get(handles.FileIndex,'String')); |
---|
| 590 | set(handles.i1,'String',num2str(i1)); |
---|
| 591 | set(handles.i2,'String',num2str(i2)); |
---|
| 592 | set(handles.j1,'String',num2str(j1)); |
---|
| 593 | set(handles.j2,'String',num2str(j2)); |
---|
| 594 | |
---|
| 595 | |
---|
| 596 | %------------------------------------------------------------------------ |
---|
| 597 | % --- Called by action in NomType edit box |
---|
| 598 | function NomType_Callback(hObject, eventdata, handles) |
---|
| 599 | %------------------------------------------------------------------------ |
---|
| 600 | i1=str2num(get(handles.i1,'String')); |
---|
| 601 | i2=str2num(get(handles.i2,'String')); |
---|
| 602 | j1=str2num(get(handles.j1,'String')); |
---|
| 603 | j2=str2num(get(handles.j2,'String')); |
---|
| 604 | FileIndex=fullfile_uvmat('','','','',get(handles.NomType,'String'),i1,i2,j1,j2); |
---|
| 605 | set(handles.FileIndex,'String',FileIndex) |
---|
[713] | 606 | % inputfilerefresh the current settings and inputfilerefresh the field view |
---|
[402] | 607 | RootPath_Callback(hObject,eventdata,handles) |
---|
| 608 | |
---|
| 609 | %------------------------------------------------------------------------ |
---|
| 610 | % --- Called by action in NomType edit box |
---|
| 611 | function NomType_1_Callback(hObject, eventdata, handles) |
---|
| 612 | %------------------------------------------------------------------------ |
---|
| 613 | i1=str2num(get(handles.i1,'String')); |
---|
| 614 | i2=str2num(get(handles.i2,'String')); |
---|
| 615 | j1=str2num(get(handles.j1,'String')); |
---|
| 616 | j2=str2num(get(handles.j2,'String')); |
---|
| 617 | FileIndex=fullfile_uvmat('','','','',get(handles.NomType_1,'String'),i1,i2,j1,j2); |
---|
| 618 | set(handles.FileIndex_1,'String',FileIndex) |
---|
[713] | 619 | % inputfilerefresh the current settings and inputfilerefresh the field view |
---|
[402] | 620 | RootPath_1_Callback(hObject,eventdata,handles) |
---|
| 621 | |
---|
[710] | 622 | %------------------------------------------------------------------------ |
---|
[713] | 623 | % --- Executes on button press in InputFileREFRESH. |
---|
| 624 | function InputFileREFRESH_Callback(hObject, eventdata, handles) |
---|
[710] | 625 | %------------------------------------------------------------------------ |
---|
[713] | 626 | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])% set button color to yellow to indicate that refresh is under action |
---|
[714] | 627 | set(handles.uvmat,'Pointer','watch') % set the mouse pointer to 'watch' |
---|
| 628 | drawnow |
---|
[710] | 629 | % read the current input file name: |
---|
| 630 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
| 631 | % if ~exist(fullfile(RootPath,SubDir),'dir') |
---|
| 632 | % msgbox_uvmat('ERROR',['directory ' fullfile(RootPath,SubDir) ' does not exist']) |
---|
| 633 | % return |
---|
| 634 | % end |
---|
| 635 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
---|
| 636 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,tild,FileType,FileInfo,MovieObject]=find_file_series(fullfile(RootPath,SubDir),[RootFile FileIndices FileExt]); |
---|
[713] | 637 | % initiate the input file series and inputfilerefresh the current field view: |
---|
[710] | 638 | errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileType,MovieObject,1); |
---|
[713] | 639 | % inputfilerefresh the second series if selected |
---|
[710] | 640 | if get(handles.SubField,'Value') |
---|
| 641 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
---|
| 642 | if ~exist(fullfile(RootPath,SubDir),'dir') |
---|
| 643 | msgbox_uvmat('ERROR',['directory ' fullfile(RootPath,SubDir) ' does not exist']) |
---|
| 644 | return |
---|
| 645 | end |
---|
| 646 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
---|
| 647 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,tild,FileType,MovieObject]=find_file_series(fullfile(RootPath,SubDir),[RootFile FileIndices FileExt]); |
---|
[713] | 648 | % initiate the input file series and inputfilerefresh the current field view: |
---|
[710] | 649 | errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileType,MovieObject,2); |
---|
| 650 | end |
---|
| 651 | |
---|
| 652 | if isempty(errormsg) |
---|
[714] | 653 | % set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% set button color to red to indicate that refresh has been updated |
---|
[710] | 654 | else |
---|
[713] | 655 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 1])% keep button color magenta, input not succesfull |
---|
[710] | 656 | end |
---|
[714] | 657 | set(handles.uvmat,'Pointer','arrow')% set back the mouse pointer to arrow |
---|
[710] | 658 | |
---|
[387] | 659 | %------------------------------------------------------------------------ |
---|
| 660 | % --- Fills the edit boxes RootPath, RootFile,NomType...from an input file name 'fileinput' |
---|
[714] | 661 | function errormsg=display_file_name(handles,fileinput,index) |
---|
[387] | 662 | %------------------------------------------------------------------------ |
---|
| 663 | %% look for the input file existence |
---|
[714] | 664 | errormsg='';%default |
---|
[387] | 665 | if ~exist(fileinput,'file') |
---|
[714] | 666 | errormsg=['input file ' fileinput ' does not exist']; |
---|
| 667 | msgbox_uvmat('ERROR',errormsg) |
---|
[387] | 668 | return |
---|
| 669 | end |
---|
| 670 | |
---|
[406] | 671 | %% define the relevant handles for the first field series (index=1) or the second file series (index=2) |
---|
[387] | 672 | if ~exist('index','var') |
---|
| 673 | index=1; |
---|
| 674 | end |
---|
| 675 | if index==1 |
---|
| 676 | handles_RootPath=handles.RootPath; |
---|
| 677 | handles_SubDir=handles.SubDir; |
---|
| 678 | handles_RootFile=handles.RootFile; |
---|
| 679 | handles_FileIndex=handles.FileIndex; |
---|
| 680 | handles_NomType=handles.NomType; |
---|
| 681 | handles_FileExt=handles.FileExt; |
---|
| 682 | elseif index==2 |
---|
| 683 | handles_RootPath=handles.RootPath_1; |
---|
| 684 | handles_SubDir=handles.SubDir_1; |
---|
| 685 | handles_RootFile=handles.RootFile_1; |
---|
| 686 | handles_FileIndex=handles.FileIndex_1; |
---|
| 687 | handles_NomType=handles.NomType_1; |
---|
| 688 | handles_FileExt=handles.FileExt_1; |
---|
| 689 | set(handles.RootPath_1,'Visible','on') |
---|
| 690 | set(handles.RootFile_1,'Visible','on') |
---|
| 691 | set(handles.SubDir_1,'Visible','on'); |
---|
| 692 | set(handles.FileIndex_1,'Visible','on'); |
---|
| 693 | set(handles.FileExt_1,'Visible','on'); |
---|
| 694 | set(handles.NomType_1,'Visible','on'); |
---|
[674] | 695 | set(handles.TimeName_1,'Visible','on') |
---|
| 696 | set(handles.TimeValue_1,'Visible','on') |
---|
[387] | 697 | end |
---|
[713] | 698 | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])% paint REFRESH button to yellow to visualise root file input |
---|
[674] | 699 | set(handles.uvmat,'Pointer','watch') % set the mouse pointer to 'watch' |
---|
| 700 | drawnow |
---|
[387] | 701 | |
---|
[674] | 702 | %% detect root name, nomenclature and indices in the input file name: |
---|
| 703 | [FilePath,FileName,FileExt]=fileparts(fileinput); |
---|
| 704 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
---|
| 705 | % the root name and indices may be corrected by including the first index i1 if a corresponding xml file exists |
---|
| 706 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,NomType,FileType,FileInfo,MovieObject,i1,i2,j1,j2]=find_file_series(FilePath,[FileName FileExt]); |
---|
| 707 | |
---|
| 708 | if strcmp(FileType,'txt') |
---|
[688] | 709 | try |
---|
| 710 | edit(fileinput) |
---|
| 711 | catch ME |
---|
| 712 | msgbox_uvmat('ERROR','invalid intput file') |
---|
| 713 | end |
---|
[674] | 714 | return |
---|
| 715 | elseif strcmp(FileType,'xml') |
---|
| 716 | editxml(fileinput) |
---|
| 717 | return |
---|
| 718 | elseif strcmp(FileType,'figure') |
---|
| 719 | open(fileinput) |
---|
| 720 | return |
---|
| 721 | end |
---|
| 722 | |
---|
[387] | 723 | %% open the file or fill the GUI uvmat according to the detected file type |
---|
| 724 | switch FileType |
---|
| 725 | case '' |
---|
| 726 | msgbox_uvmat('ERROR','invalid input file type') |
---|
| 727 | case 'txt' |
---|
| 728 | edit(fileinput) |
---|
| 729 | case 'figure' %display matlab figure |
---|
| 730 | hfig=open(fileinput); |
---|
| 731 | set(hfig,'WindowButtonMotionFcn','mouse_motion')%set mouse action functio |
---|
| 732 | set(hfig,'WindowButtonUpFcn','mouse_up')%set mouse click action function |
---|
| 733 | set(hfig,'WindowButtonUpFcn','mouse_down')%set mouse click action function |
---|
[503] | 734 | case 'xml' % edit xml files |
---|
[507] | 735 | t=xmltree(fileinput); |
---|
[508] | 736 | % the xml file marks a project or project link, open datatree_browser |
---|
[507] | 737 | if strcmp(get(t,1,'name'),'Project')&& exist(regexprep(fileinput,'.xml$',''),'dir') |
---|
[503] | 738 | datatree_browser(fileinput) |
---|
[508] | 739 | else % other xml file, open the xml editor |
---|
[503] | 740 | editxml(fileinput); |
---|
| 741 | end |
---|
[508] | 742 | case 'xls'% Excel file opended by editxml |
---|
[387] | 743 | editxml(fileinput); |
---|
| 744 | otherwise |
---|
| 745 | set(handles_RootPath,'String',RootPath); |
---|
| 746 | rootname=fullfile(RootPath,SubDir,RootFile); |
---|
| 747 | set(handles_SubDir,'String',['/' SubDir]); |
---|
| 748 | set(handles_RootFile,'String',['/' RootFile]); %display the separator |
---|
| 749 | indices=fileinput(length(rootname)+1:end); |
---|
| 750 | indices(end-length(FileExt)+1:end)=[]; %remove extension |
---|
| 751 | set(handles_FileIndex,'String',indices); |
---|
| 752 | set(handles_NomType,'String',NomType); |
---|
| 753 | set(handles_FileExt,'String',FileExt); |
---|
| 754 | if index==1 |
---|
| 755 | % fill file index counters if the first file series is opened |
---|
| 756 | set(handles.i1,'String',num2str(i1)); |
---|
| 757 | set(handles.i2,'String',num2str(i2)); |
---|
| 758 | set(handles.j1,'String',num2stra(j1,NomType)); |
---|
| 759 | set(handles.j2,'String',num2stra(j2,NomType)); |
---|
[515] | 760 | else %read the current field index to synchronise with the first series |
---|
| 761 | i1_s=str2num(get(handles.i1,'String')); |
---|
| 762 | i2_0=str2num(get(handles.i2,'String')); |
---|
| 763 | if ~isempty(i2_0) |
---|
| 764 | i2_s=i2_0; |
---|
| 765 | else |
---|
| 766 | i2_s=i2; |
---|
| 767 | end |
---|
| 768 | j1_0=stra2num(get(handles.j1,'String')); |
---|
| 769 | if ~isempty(j1_0) |
---|
| 770 | j1_s=j1_0; |
---|
| 771 | else |
---|
| 772 | j1_s=j1; |
---|
| 773 | end |
---|
| 774 | j2_0=stra2num(get(handles.j2,'String')); |
---|
| 775 | if ~isempty(j2_0) |
---|
| 776 | j2_s=j2_0; |
---|
| 777 | else |
---|
| 778 | j2_s=j2; |
---|
| 779 | end |
---|
[387] | 780 | end |
---|
| 781 | |
---|
| 782 | % synchronise indices of the second input file if it exists |
---|
| 783 | if get(handles.SubField,'Value')==1% if the subfield button is activated, update the field numbers |
---|
| 784 | Input=read_GUI(handles.InputFile); |
---|
| 785 | if ~isfield(Input,'RootPath_1')||strcmp(Input.RootPath_1,'"') |
---|
| 786 | Input.RootPath_1=Input.RootPath; |
---|
| 787 | end |
---|
| 788 | if ~isfield(Input,'SubDir_1')||strcmp(Input.SubDir_1,'"') |
---|
| 789 | Input.SubDir_1=Input.SubDir; |
---|
| 790 | end |
---|
| 791 | if ~isfield(Input,'RootFile_1')||strcmp(Input.RootFile_1,'"') |
---|
| 792 | Input.RootFile_1=Input.RootFile; |
---|
| 793 | end |
---|
[405] | 794 | if ~isfield(Input,'FileExt_1')||strcmp(Input.FileExt_1,'"') |
---|
| 795 | Input.FileExt_1=Input.FileExt; |
---|
| 796 | end |
---|
| 797 | if ~isfield(Input,'NomType_1')||strcmp(Input.NomType_1,'"') |
---|
| 798 | Input.NomType_1=Input.NomType; |
---|
| 799 | end |
---|
[387] | 800 | %updtate the indices of the second field series to correspond to the newly opened one |
---|
[515] | 801 | FileName_1=fullfile_uvmat(Input.RootPath_1,Input.SubDir_1,Input.RootFile_1,Input.FileExt_1,Input.NomType_1,i1_s,i2_s,j1_s,j2_s); |
---|
[387] | 802 | if exist(FileName_1,'file') |
---|
[515] | 803 | FileIndex_1=fullfile_uvmat('','','','',Input.NomType_1,i1_s,i2_s,j1_s,j2_s); |
---|
| 804 | else |
---|
[387] | 805 | FileIndex_1=fullfile_uvmat('','','','',Input.NomType_1,i1,i2,j1,j2); |
---|
[408] | 806 | msgbox_uvmat('WARNING','unable to synchronise the indices of the two series') |
---|
[387] | 807 | end |
---|
[515] | 808 | set(handles.FileIndex_1,'String',FileIndex_1) |
---|
[387] | 809 | end |
---|
| 810 | |
---|
| 811 | %enable other menus |
---|
[651] | 812 | set(handles.MenuOpenCampaign,'Enable','on') |
---|
[387] | 813 | set(handles.MenuExport,'Enable','on') |
---|
| 814 | set(handles.MenuExportFigure,'Enable','on') |
---|
| 815 | set(handles.MenuExportMovie,'Enable','on') |
---|
| 816 | set(handles.MenuTools,'Enable','on') |
---|
[503] | 817 | |
---|
[713] | 818 | % initiate input file series and inputfilerefresh the current field view: |
---|
[387] | 819 | update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileType,MovieObject,index); |
---|
| 820 | |
---|
| 821 | end |
---|
| 822 | |
---|
[503] | 823 | %% update list of recent files in the menubar and save it for future opening |
---|
| 824 | MenuFile=[{get(handles.MenuFile_1,'Label')};{get(handles.MenuFile_2,'Label')};... |
---|
| 825 | {get(handles.MenuFile_3,'Label')};{get(handles.MenuFile_4,'Label')};{get(handles.MenuFile_5,'Label')}]; |
---|
| 826 | str_find=strcmp(fileinput,MenuFile); |
---|
| 827 | if isempty(find(str_find,1)) |
---|
| 828 | MenuFile=[{fileinput};MenuFile];%insert the current file if not already in the list |
---|
| 829 | end |
---|
| 830 | for ifile=1:min(length(MenuFile),5) |
---|
[576] | 831 | set(handles.(['MenuFile_' num2str(ifile)]),'Label',MenuFile{ifile}); |
---|
[651] | 832 | %set(handles.(['MenuFile_' num2str(ifile) '_1']),'Label',MenuFile{ifile}); |
---|
[503] | 833 | end |
---|
| 834 | dir_perso=prefdir; |
---|
| 835 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 836 | if exist(profil_perso,'file') |
---|
[576] | 837 | save (profil_perso,'MenuFile','RootPath','-append'); %store the file names for future opening of uvmat |
---|
[503] | 838 | else |
---|
[576] | 839 | save (profil_perso,'MenuFile','RootPath','-V6'); %store the file names for future opening of uvmat |
---|
[503] | 840 | end |
---|
| 841 | |
---|
[713] | 842 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% paint back button to red to indicate update is finished |
---|
[674] | 843 | set(handles.uvmat,'Pointer','arrow')% set back the mouse pointer to arrow |
---|
[387] | 844 | |
---|
| 845 | |
---|
| 846 | %------------------------------------------------------------------------ |
---|
| 847 | % --- Update information about a new field series (indices to scan, timing, |
---|
[713] | 848 | % calibration from an xml file, then inputfilerefresh current plots |
---|
[710] | 849 | function errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileType,VideoObject,index) |
---|
[387] | 850 | %------------------------------------------------------------------------ |
---|
[710] | 851 | errormsg=''; %default error msg |
---|
[387] | 852 | %% define the relevant handles depending on the index (1=first file series, 2= second file series) |
---|
| 853 | if ~exist('index','var') |
---|
| 854 | index=1; |
---|
| 855 | end |
---|
| 856 | if index==1 |
---|
[526] | 857 | handles_Fields=handles.FieldName; |
---|
[387] | 858 | elseif index==2 |
---|
[526] | 859 | handles_Fields=handles.FieldName_1; |
---|
[387] | 860 | end |
---|
| 861 | |
---|
[526] | 862 | set(handles.FieldName,'UserData',[])% reinialize data from uvmat opening |
---|
[387] | 863 | UvData=get(handles.uvmat,'UserData');%huvmat=handles of the uvmat interface |
---|
[713] | 864 | UvData.NewSeries=1; %flag for REFRESH: begin a new series |
---|
[511] | 865 | UvData.FileName_1='';% name of the current second field (used to detect a constant field during file scanning) |
---|
[387] | 866 | UvData.FileType{index}=FileType; |
---|
| 867 | UvData.i1_series{index}=i1_series; |
---|
| 868 | UvData.i2_series{index}=i2_series; |
---|
| 869 | UvData.j1_series{index}=j1_series; |
---|
| 870 | UvData.j2_series{index}=j2_series; |
---|
| 871 | set(handles.FixVelType,'Value',0); %desactivate fixed veltype |
---|
| 872 | if index==1 |
---|
| 873 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
| 874 | else |
---|
| 875 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
---|
| 876 | end |
---|
| 877 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
---|
| 878 | FileBase=fullfile(RootPath,RootFile); |
---|
| 879 | if ~exist(FileName,'file') |
---|
[710] | 880 | errormsg=['input file ' FileName ' not found']; |
---|
| 881 | msgbox_uvmat('ERROR',errormsg); |
---|
[387] | 882 | return |
---|
| 883 | end |
---|
| 884 | |
---|
| 885 | %% read timing and total frame number from the current file (movie files) !! may be overrid by xml file |
---|
[674] | 886 | TimeUnit='';%default |
---|
| 887 | TimeName='';%default |
---|
[387] | 888 | XmlData.Time=[];%default |
---|
| 889 | imainfo=[]; |
---|
| 890 | ColorType='falsecolor'; %default |
---|
[397] | 891 | UvData.MovieObject{index}=VideoObject; |
---|
[675] | 892 | if ~isempty(VideoObject)% case of video data |
---|
[397] | 893 | imainfo=get(VideoObject); |
---|
[387] | 894 | TimeUnit='s'; |
---|
[494] | 895 | if isempty(j1_series); %frame index along i |
---|
[674] | 896 | XmlData.Time=zeros(imainfo.NumberOfFrames+1,2); |
---|
| 897 | XmlData.Time(:,2)=(0:1/imainfo.FrameRate:(imainfo.NumberOfFrames)/imainfo.FrameRate)'; |
---|
[494] | 898 | else |
---|
[674] | 899 | XmlData.Time=[0;ones(size(i1_series,3)-1,1)]*(0:1/imainfo.FrameRate:(imainfo.NumberOfFrames)/imainfo.FrameRate); |
---|
[494] | 900 | end |
---|
[675] | 901 | %set(handles.Dt_txt,'String',['Dt=' num2str(1000/imainfo.FrameRate) 'ms']);%display the elementary time interval in millisec |
---|
[674] | 902 | TimeName='video'; |
---|
[397] | 903 | ColorType='truecolor'; |
---|
[387] | 904 | elseif ~isempty(FileExt(2:end))&&(~isempty(imformats(FileExt(2:end))) || isequal(FileExt,'.vol'))%&& isequal(NomType,'*')% multi-frame image |
---|
| 905 | if ~isequal(SubDir,'') |
---|
| 906 | imainfo=imfinfo([fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]); |
---|
| 907 | else |
---|
| 908 | imainfo=imfinfo([FileBase FileIndices FileExt]); |
---|
| 909 | end |
---|
| 910 | ColorType=imainfo.ColorType;%='truecolor' for color images |
---|
| 911 | end |
---|
| 912 | if isfield(imainfo,'Width') && isfield(imainfo,'Height') |
---|
| 913 | if length(imainfo)>1 |
---|
| 914 | set(handles.num_Npx,'String',num2str(imainfo(1).Width));%fills nbre of pixels x box |
---|
| 915 | set(handles.num_Npy,'String',num2str(imainfo(1).Height));%fills nbre of pixels x box |
---|
| 916 | else |
---|
| 917 | set(handles.num_Npx,'String',num2str(imainfo.Width));%fills nbre of pixels x box |
---|
| 918 | set(handles.num_Npy,'String',num2str(imainfo.Height));%fills nbre of pixels x box |
---|
| 919 | end |
---|
| 920 | else |
---|
| 921 | set(handles.num_Npx,'String','');%fills nbre of pixels x box |
---|
| 922 | set(handles.num_Npy,'String','');%fills nbre of pixels x box |
---|
| 923 | end |
---|
| 924 | set(handles.CheckBW,'Value',strcmp(ColorType,'grayscale'))% select handles.CheckBW if grayscale image |
---|
| 925 | |
---|
| 926 | %% read parameters (time, geometric calibration..) from a documentation file (.xml advised) |
---|
[674] | 927 | XmlData.GeometryCalib=[];%default |
---|
[469] | 928 | XmlFileName=find_imadoc(RootPath,SubDir,RootFile,FileExt); |
---|
| 929 | [tild,tild,DocExt]=fileparts(XmlFileName); |
---|
[387] | 930 | warntext='';%default warning message |
---|
| 931 | NbSlice=1;%default |
---|
[611] | 932 | ImaDoc_str=''; |
---|
[469] | 933 | if ~isempty(XmlFileName) |
---|
[387] | 934 | set(handles.view_xml,'Visible','on') |
---|
[611] | 935 | set(handles.view_xml,'BackgroundColor',[1 1 0])% paint to yellow color to indicate reading of the xml file |
---|
[387] | 936 | set(handles.view_xml,'String','view .xml') |
---|
| 937 | drawnow |
---|
[469] | 938 | [XmlDataRead,warntext]=imadoc2struct(XmlFileName); |
---|
[688] | 939 | if ~isempty(warntext) |
---|
| 940 | msgbox_uvmat('WARNING',warntext) |
---|
| 941 | end |
---|
[611] | 942 | if ~isempty(XmlDataRead) |
---|
[688] | 943 | ImaDoc_str=['view ' DocExt]; % DocExt= '.xml' or .civ (obsolete case) |
---|
| 944 | %XmlData=XmlDataRead; |
---|
| 945 | if isfield(XmlDataRead,'TimeUnit')&& ~isempty(XmlDataRead.TimeUnit) |
---|
| 946 | TimeUnit=XmlDataRead.TimeUnit; |
---|
| 947 | end |
---|
| 948 | if isfield(XmlDataRead,'Time')&& ~isempty(XmlDataRead.Time) |
---|
| 949 | XmlData.Time=XmlDataRead.Time; |
---|
| 950 | end |
---|
[683] | 951 | set(handles.view_xml,'BackgroundColor',[1 1 1])% paint back to white |
---|
[456] | 952 | drawnow |
---|
[683] | 953 | if isfield(XmlDataRead, 'GeometryCalib') && ~isempty(XmlDataRead.GeometryCalib) |
---|
| 954 | XmlData.GeometryCalib=XmlDataRead.GeometryCalib; |
---|
[456] | 955 | if isfield(XmlData.GeometryCalib,'VolumeScan') && isequal(XmlData.GeometryCalib.VolumeScan,'y') |
---|
[589] | 956 | set (handles.slices,'String','volume') |
---|
[456] | 957 | end |
---|
[688] | 958 | % check whether the GUI geometry_calib is opened |
---|
[456] | 959 | hgeometry_calib=findobj('tag','geometry_calib'); |
---|
[683] | 960 | if ~isempty(hgeometry_calib) % check whether the display of the GUI geometry_calib is consistent with the current calib param |
---|
[456] | 961 | GUserData=get(hgeometry_calib,'UserData'); |
---|
[469] | 962 | if ~(isfield(GUserData,'XmlInputFile') && strcmp(GUserData.XmlInputFile,XmlFileName)) |
---|
[683] | 963 | answer=msgbox_uvmat('INPUT_Y-N','refresh the display of the GUI geometry_calib with the new input data?'); |
---|
[456] | 964 | if strcmp(answer,'Yes') |
---|
[469] | 965 | geometry_calib(XmlFileName);%diplay the new calibration points and parameters in geometry_calib |
---|
[456] | 966 | end |
---|
[387] | 967 | end |
---|
| 968 | end |
---|
| 969 | end |
---|
[441] | 970 | end |
---|
[387] | 971 | end |
---|
[674] | 972 | if isempty(ImaDoc_str) |
---|
| 973 | set(handles.view_xml,'Visible','off') % no .xml (or .civ) file detected |
---|
[648] | 974 | else |
---|
[674] | 975 | set(handles.view_xml,'String',ImaDoc_str)% indicate that a xml file has been detected |
---|
[494] | 976 | end |
---|
[674] | 977 | |
---|
| 978 | %% Define timing |
---|
| 979 | % time not set by the input file: images or civ data: indicate that time is read from the xml file |
---|
| 980 | if isfield(XmlData,'Time')&& ~isempty(XmlData.Time) && ... |
---|
| 981 | (strcmp(FileType,'image')|| strcmp(FileType,'multimage')||strcmp(FileType,'civdata')||strcmp(FileType,'civx')) |
---|
| 982 | TimeName='xml'; |
---|
[675] | 983 | elseif strcmp(FileType,'civdata') |
---|
| 984 | TimeName='civdata'; |
---|
| 985 | elseif strcmp(FileType,'civx') |
---|
| 986 | TimeName='civx'; |
---|
[674] | 987 | end |
---|
| 988 | if index==1 |
---|
| 989 | set(handles.TimeName,'String',TimeName) |
---|
[611] | 990 | else |
---|
[674] | 991 | set(handles.TimeName_1,'String',TimeName) |
---|
| 992 | set(handles.TimeName_1,'Visible','on') |
---|
[611] | 993 | end |
---|
[387] | 994 | |
---|
[648] | 995 | %% store last index in handles.MaxIndex_i and .MaxIndex_j |
---|
[496] | 996 | nbfield=max(max(max(i2_series))); |
---|
[387] | 997 | if isempty(nbfield) |
---|
[496] | 998 | nbfield=max(max(max(i1_series))); |
---|
[387] | 999 | end |
---|
[496] | 1000 | nbfield_j=max(max(max(j2_series))); |
---|
[387] | 1001 | if isempty(nbfield_j) |
---|
[552] | 1002 | nbfield_j=max(max(max(j1_series))); |
---|
[387] | 1003 | end |
---|
[674] | 1004 | if isfield(XmlData,'Time')&& ~isempty(XmlData.Time) |
---|
[387] | 1005 | %transform .Time to a column vector if it is a line vector the nomenclature uses a single index |
---|
[441] | 1006 | if isequal(size(XmlData.Time,1),1) |
---|
[456] | 1007 | XmlData.Time=(XmlData.Time)'; |
---|
[387] | 1008 | end |
---|
| 1009 | end |
---|
[648] | 1010 | last_i_cell=get(handles.MaxIndex_i,'String'); |
---|
[387] | 1011 | if isempty(nbfield) |
---|
[552] | 1012 | last_i_cell{index}=''; |
---|
[387] | 1013 | else |
---|
[552] | 1014 | last_i_cell{index}=num2str(nbfield); |
---|
[387] | 1015 | end |
---|
[648] | 1016 | set(handles.MaxIndex_i,'String',last_i_cell) |
---|
| 1017 | last_j_cell=get(handles.MaxIndex_j,'String'); |
---|
[387] | 1018 | if isempty(nbfield_j) |
---|
[552] | 1019 | last_j_cell{index}=''; |
---|
[387] | 1020 | else |
---|
[552] | 1021 | last_j_cell{index}=num2str(nbfield_j); |
---|
[387] | 1022 | end |
---|
[648] | 1023 | set(handles.MaxIndex_j,'String',last_j_cell); |
---|
[387] | 1024 | |
---|
| 1025 | %% store geometric calibration in UvData |
---|
| 1026 | if isfield(XmlData,'GeometryCalib') |
---|
| 1027 | GeometryCalib=XmlData.GeometryCalib; |
---|
| 1028 | if isempty(GeometryCalib) |
---|
[689] | 1029 | set(handles.pxcmx,'String','') |
---|
| 1030 | set(handles.pxcmy,'String','') |
---|
| 1031 | set(handles.pxcmx,'Visible','off') |
---|
| 1032 | set(handles.pxcmy,'Visible','off') |
---|
[591] | 1033 | set(handles.TransformName,'Value',1); % no transform by default |
---|
[387] | 1034 | else |
---|
[689] | 1035 | set(handles.pxcmx,'Visible','on') |
---|
| 1036 | set(handles.pxcmy,'Visible','on') |
---|
[387] | 1037 | if (isfield(GeometryCalib,'R')&& ~isequal(GeometryCalib.R(2,1),0) && ~isequal(GeometryCalib.R(1,2),0)) ||... |
---|
| 1038 | (isfield(GeometryCalib,'kappa1')&& ~isequal(GeometryCalib.kappa1,0)) |
---|
[689] | 1039 | set(handles.pxcmx,'String','var') |
---|
| 1040 | set(handles.pxcmy,'String','var') |
---|
[387] | 1041 | elseif isfield(GeometryCalib,'fx_fy') |
---|
| 1042 | pixcmx=GeometryCalib.fx_fy(1);%*GeometryCalib.R(1,1)*GeometryCalib.sx/(GeometryCalib.Tz*GeometryCalib.dpx); |
---|
| 1043 | pixcmy=GeometryCalib.fx_fy(2);%*GeometryCalib.R(2,2)/(GeometryCalib.Tz*GeometryCalib.dpy); |
---|
[689] | 1044 | set(handles.pxcmx,'String',num2str(pixcmx)) |
---|
| 1045 | set(handles.pxcmy,'String',num2str(pixcmy)) |
---|
[387] | 1046 | end |
---|
| 1047 | if ~get(handles.CheckFixLimits,'Value') |
---|
[591] | 1048 | set(handles.TransformName,'Value',3); % phys transform by default if fixedLimits is off |
---|
[387] | 1049 | end |
---|
[508] | 1050 | if isfield(GeometryCalib,'SliceCoord') |
---|
[387] | 1051 | siz=size(GeometryCalib.SliceCoord); |
---|
| 1052 | if siz(1)>1 |
---|
| 1053 | NbSlice=siz(1); |
---|
| 1054 | set(handles.slices,'Visible','on') |
---|
| 1055 | set(handles.slices,'Value',1) |
---|
| 1056 | end |
---|
| 1057 | if isfield(GeometryCalib,'VolumeScan') && isequal(GeometryCalib.VolumeScan,'y') |
---|
[589] | 1058 | set(handles.num_NbSlice,'Visible','off') |
---|
[387] | 1059 | else |
---|
[589] | 1060 | set(handles.num_NbSlice,'Visible','on') |
---|
[497] | 1061 | set(handles.num_NbSlice,'String',num2str(NbSlice)) |
---|
[387] | 1062 | end |
---|
| 1063 | slices_Callback([],[], handles) |
---|
| 1064 | end |
---|
| 1065 | end |
---|
| 1066 | end |
---|
| 1067 | |
---|
| 1068 | %% update the data attached to the uvmat interface |
---|
[675] | 1069 | if ~isempty(TimeUnit) |
---|
| 1070 | if index==2 && isfield(UvData,'TimeUnit') && ~strcmp(UvData.TimeUnit,TimeUnit) |
---|
[688] | 1071 | msgbox_uvmat('WARNING',['time unit for second file series ' TimeUnit ' inconsistent with first series']) |
---|
[675] | 1072 | else |
---|
| 1073 | UvData.TimeUnit=TimeUnit; |
---|
| 1074 | end |
---|
| 1075 | end |
---|
[387] | 1076 | UvData.XmlData{index}=XmlData; |
---|
| 1077 | UvData.NewSeries=1; |
---|
| 1078 | |
---|
| 1079 | %display warning message |
---|
[688] | 1080 | if ~isequal(warntext,'') |
---|
[387] | 1081 | msgbox_uvmat('WARNING',warntext); |
---|
| 1082 | end |
---|
| 1083 | |
---|
[526] | 1084 | %% set default options in menu 'FieldName' |
---|
[517] | 1085 | switch FileType |
---|
| 1086 | case {'civx','civdata'} |
---|
[581] | 1087 | [FieldList,ColorList]=set_field_list('U','V','C'); |
---|
[525] | 1088 | set(handles_Fields,'String',[{'image'};FieldList;{'get_field...'}]);%standard menu for civx data |
---|
| 1089 | set(handles_Fields,'Value',2) % set menu to 'velocity |
---|
[580] | 1090 | if index==1 |
---|
| 1091 | set(handles.FieldName_1,'Value',1); |
---|
| 1092 | set(handles.FieldName_1,'String',[{''};{'image'};FieldList;{'get_field...'}]);%standard menu for civx data reproduced for the second field |
---|
| 1093 | end |
---|
[525] | 1094 | set(handles.ColorScalar,'Value',1) |
---|
| 1095 | set(handles.ColorScalar,'String',ColorList) |
---|
| 1096 | set(handles.Vectors,'Visible','on') |
---|
| 1097 | set(handles.Coord_x,'Value',1); |
---|
[646] | 1098 | set(handles.Coord_x,'String','X'); |
---|
| 1099 | % set(handles.Coord_y,'Value',1); |
---|
| 1100 | set(handles.Coord_y,'Data',{'Y'}); |
---|
[517] | 1101 | case 'netcdf' |
---|
[387] | 1102 | set(handles_Fields,'Value',1) |
---|
| 1103 | set(handles_Fields,'String',{'get_field...'}) |
---|
[713] | 1104 | if index==1 |
---|
| 1105 | FieldName_Callback([],[], handles) |
---|
| 1106 | else |
---|
| 1107 | FieldName_1_Callback([],[], handles) |
---|
| 1108 | end |
---|
[517] | 1109 | otherwise |
---|
| 1110 | set(handles_Fields,'Value',1) % set menu to 'image' |
---|
| 1111 | set(handles_Fields,'String',{'image'}) |
---|
[525] | 1112 | set(handles.Coord_x,'Value',1); |
---|
[646] | 1113 | set(handles.Coord_x,'String','AX'); |
---|
| 1114 | set(handles.Coord_y,'Data',{'AY'}); |
---|
[387] | 1115 | end |
---|
| 1116 | set(handles.uvmat,'UserData',UvData) |
---|
| 1117 | |
---|
[713] | 1118 | %% set index navigation options and inputfilerefresh plots |
---|
[387] | 1119 | scan_option='i';%default |
---|
| 1120 | state_j='off'; %default |
---|
| 1121 | if index==2 |
---|
| 1122 | if get(handles.scan_j,'Value') |
---|
[494] | 1123 | scan_option='j'; %keep the scan option for the second file series |
---|
[387] | 1124 | end |
---|
| 1125 | if strcmp(get(handles.j1,'Visible'),'on') |
---|
| 1126 | state_j='on'; |
---|
| 1127 | end |
---|
| 1128 | end |
---|
[515] | 1129 | [ref_j,ref_i]=find(squeeze(i1_series(1,:,:))); |
---|
[387] | 1130 | if ~isempty(j1_series) |
---|
| 1131 | state_j='on'; |
---|
[494] | 1132 | if index==1 |
---|
[515] | 1133 | if isequal(ref_i,ref_i(1)*ones(size(ref_j)))% if ref_i is always equal to its first value |
---|
[494] | 1134 | scan_option='j'; %scan j indext |
---|
| 1135 | end |
---|
| 1136 | end |
---|
[387] | 1137 | end |
---|
| 1138 | if isequal(scan_option,'i') |
---|
[494] | 1139 | diff_ref_i=diff(ref_i,1); |
---|
| 1140 | if isempty(diff_ref_i) |
---|
| 1141 | diff_ref_i=1; |
---|
| 1142 | end |
---|
| 1143 | if isequal (diff_ref_i,diff_ref_i(1)*ones(size(diff_ref_i))) |
---|
[511] | 1144 | set(handles.num_IndexIncrement,'String',num2str(diff_ref_i(1))) |
---|
[494] | 1145 | end |
---|
[387] | 1146 | set(handles.scan_i,'Value',1) |
---|
| 1147 | scan_i_Callback([],[], handles); |
---|
| 1148 | else |
---|
[494] | 1149 | diff_ref_j=diff(ref_j); |
---|
| 1150 | if isempty(diff_ref_j) |
---|
| 1151 | diff_ref_j=1; |
---|
| 1152 | end |
---|
| 1153 | if isequal (diff_ref_j,diff_ref_j(1)*ones(size(diff_ref_j))) |
---|
[511] | 1154 | set(handles.num_IndexIncrement,'String',num2str(diff_ref_j(1))) |
---|
[494] | 1155 | end |
---|
[387] | 1156 | set(handles.scan_j,'Value',1) |
---|
| 1157 | scan_j_Callback([],[], handles); |
---|
| 1158 | end |
---|
| 1159 | set(handles.scan_j,'Visible',state_j) |
---|
| 1160 | set(handles.j1,'Visible',state_j) |
---|
| 1161 | set(handles.j2,'Visible',state_j) |
---|
[648] | 1162 | set(handles.MaxIndex_j,'Visible',state_j); |
---|
[387] | 1163 | set(handles.j_text,'Visible',state_j); |
---|
| 1164 | if ~isempty(i2_series)||~isempty(j2_series) |
---|
| 1165 | set(handles.CheckFixPair,'Visible','on') |
---|
| 1166 | elseif index==1 |
---|
| 1167 | set(handles.CheckFixPair,'Visible','off') |
---|
| 1168 | end |
---|
| 1169 | |
---|
[508] | 1170 | %% apply the effect of the transform fct and view the field |
---|
[591] | 1171 | transform=get(handles.TransformPath,'UserData'); |
---|
[515] | 1172 | if index==2 && (~isa(transform,'function_handle')||nargin(transform)<3) |
---|
[591] | 1173 | set(handles.TransformName,'value',2); % set transform to sub_field if the current fct doe not accept two input fields |
---|
[515] | 1174 | end |
---|
[714] | 1175 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% set button color to red to indicate that refresh has been updated |
---|
| 1176 | TransformName_Callback([],[],handles)% callback for the selection of transform function, then refresh the current plot |
---|
[387] | 1177 | mask_test=get(handles.CheckMask,'value'); |
---|
| 1178 | if mask_test |
---|
| 1179 | MaskData=get(handles.CheckMask,'UserData'); |
---|
| 1180 | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle) |
---|
| 1181 | delete(MaskData.maskhandle) %delete old mask |
---|
| 1182 | end |
---|
| 1183 | CheckMask_Callback([],[],handles) |
---|
| 1184 | end |
---|
| 1185 | |
---|
| 1186 | %------------------------------------------------------------------------ |
---|
| 1187 | % --- switch file index scanning options scan_i and scan_j in an exclusive way |
---|
[667] | 1188 | %------------------------------------------------------------------------ |
---|
[387] | 1189 | function scan_i_Callback(hObject, eventdata, handles) |
---|
[667] | 1190 | |
---|
[387] | 1191 | if get(handles.scan_i,'Value')==1 |
---|
| 1192 | set(handles.scan_j,'Value',0) |
---|
| 1193 | else |
---|
| 1194 | set(handles.scan_j,'Value',1) |
---|
| 1195 | end |
---|
| 1196 | scan_j_Callback(hObject, eventdata, handles) |
---|
| 1197 | |
---|
| 1198 | %------------------------------------------------------------------------ |
---|
| 1199 | % --- switch file index scanning options scan_i and scan_j in an exclusive way |
---|
[667] | 1200 | %------------------------------------------------------------------------ |
---|
[387] | 1201 | function scan_j_Callback(hObject, eventdata, handles) |
---|
[667] | 1202 | |
---|
[387] | 1203 | if get(handles.scan_j,'Value')==1 |
---|
| 1204 | set(handles.scan_i,'Value',0) |
---|
| 1205 | else |
---|
| 1206 | set(handles.scan_i,'Value',1) |
---|
| 1207 | set(handles.CheckFixPair,'Visible','off') |
---|
| 1208 | end |
---|
| 1209 | |
---|
| 1210 | %------------------------------------------------------------------------ |
---|
| 1211 | function i1_Callback(hObject, eventdata, handles) |
---|
| 1212 | %------------------------------------------------------------------------ |
---|
[515] | 1213 | update_ij(handles,1) |
---|
[387] | 1214 | |
---|
| 1215 | %------------------------------------------------------------------------ |
---|
| 1216 | function i2_Callback(hObject, eventdata, handles) |
---|
| 1217 | %------------------------------------------------------------------------ |
---|
[515] | 1218 | update_ij(handles,2) |
---|
[387] | 1219 | |
---|
| 1220 | %------------------------------------------------------------------------ |
---|
| 1221 | function j1_Callback(hObject, eventdata, handles) |
---|
| 1222 | %------------------------------------------------------------------------ |
---|
[515] | 1223 | update_ij(handles,3) |
---|
[387] | 1224 | |
---|
| 1225 | %------------------------------------------------------------------------ |
---|
| 1226 | function j2_Callback(hObject, eventdata, handles) |
---|
| 1227 | %------------------------------------------------------------------------ |
---|
[515] | 1228 | update_ij(handles,4) |
---|
[387] | 1229 | |
---|
| 1230 | %------------------------------------------------------------------------ |
---|
[515] | 1231 | %--- update the index display after action on edit boxes i1, i2, j1 or j2 |
---|
[675] | 1232 | %------------------------------------------------------------------------ |
---|
[515] | 1233 | function update_ij(handles,index_rank) |
---|
[675] | 1234 | |
---|
[515] | 1235 | NomType=get(handles.NomType,'String'); |
---|
| 1236 | indices=get(handles.FileIndex,'String'); |
---|
| 1237 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(indices);% the indices for the second series taken from FileIndex |
---|
| 1238 | switch index_rank |
---|
| 1239 | case 1 |
---|
| 1240 | indices=fullfile_uvmat('','','','',NomType,stra2num(get(handles.i1,'String')),i2,j1,j2); |
---|
| 1241 | set(handles.i1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
---|
| 1242 | case 2 |
---|
| 1243 | indices=fullfile_uvmat('','','','',NomType,i1,stra2num(get(handles.i2,'String')),j1,j2); |
---|
| 1244 | set(handles.i2,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
---|
| 1245 | case 3 |
---|
| 1246 | indices=fullfile_uvmat('','','','',NomType,i1,i2,stra2num(get(handles.j1,'String')),j2); |
---|
| 1247 | set(handles.j1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
---|
| 1248 | case 4 |
---|
| 1249 | indices=fullfile_uvmat('','','','',NomType,i1,i2,j1,stra2num(get(handles.j2,'String'))); |
---|
| 1250 | set(handles.j2,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
---|
| 1251 | end |
---|
| 1252 | set(handles.FileIndex,'String',indices) |
---|
| 1253 | set(handles.FileIndex,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
---|
| 1254 | % update the second index if relevant |
---|
| 1255 | if strcmp(get(handles.FileIndex_1,'Visible'),'on') |
---|
| 1256 | NomType_1=get(handles.NomType_1,'String'); |
---|
| 1257 | indices_1=get(handles.FileIndex_1,'String'); |
---|
| 1258 | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(indices_1);% the indices for the second series taken from FileIndex_1 |
---|
| 1259 | switch index_rank |
---|
| 1260 | case 1 |
---|
| 1261 | indices_1=fullfile_uvmat('','','','',NomType_1,stra2num(get(handles.i1,'String')),i2_1,j1_1,j2_1); |
---|
| 1262 | case 2 |
---|
| 1263 | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,stra2num(get(handles.i2,'String')),j1_1,j2_1); |
---|
| 1264 | case 3 |
---|
| 1265 | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,i2_1,stra2num(get(handles.j1,'String')),j2_1); |
---|
| 1266 | case 4 |
---|
| 1267 | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,i2_1,j1_1,stra2num(get(handles.j2,'String'))); |
---|
| 1268 | end |
---|
| 1269 | set(handles.FileIndex_1,'String',indices_1) |
---|
| 1270 | set(handles.FileIndex_1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
---|
| 1271 | end |
---|
| 1272 | |
---|
| 1273 | %------------------------------------------------------------------------ |
---|
| 1274 | |
---|
| 1275 | %------------------------------------------------------------------------ |
---|
[387] | 1276 | function slices_Callback(hObject, eventdata, handles) |
---|
| 1277 | %------------------------------------------------------------------------ |
---|
[589] | 1278 | if strcmp(get(handles.slices,'String'),'slices') |
---|
| 1279 | if get(handles.slices,'Value')==1 |
---|
| 1280 | set(handles.num_NbSlice,'Visible','on') |
---|
| 1281 | set(handles.z_text,'Visible','on') |
---|
| 1282 | set(handles.z_index,'Visible','on') |
---|
| 1283 | num_NbSlice_Callback(hObject, eventdata, handles) |
---|
| 1284 | else |
---|
| 1285 | set(handles.num_NbSlice,'Visible','off') |
---|
| 1286 | set(handles.z_text,'Visible','off') |
---|
| 1287 | set(handles.z_index,'Visible','off') |
---|
| 1288 | set(handles.masklevel,'Value',1) |
---|
| 1289 | set(handles.masklevel,'String',{'1'}) |
---|
| 1290 | end |
---|
[387] | 1291 | end |
---|
| 1292 | |
---|
| 1293 | %------------------------------------------------------------------------ |
---|
[497] | 1294 | function num_NbSlice_Callback(hObject, eventdata, handles) |
---|
[387] | 1295 | %------------------------------------------------------------------------ |
---|
[589] | 1296 | mode=get(handles.slices,'String'); |
---|
[497] | 1297 | nb_slice_str=get(handles.num_NbSlice,'String'); |
---|
[589] | 1298 | if strcmp(mode,'volume') |
---|
| 1299 | z=stra2num(get(handles.j1,'String')); |
---|
[387] | 1300 | else |
---|
| 1301 | num=str2double(get(handles.i1,'String')); |
---|
[497] | 1302 | nbslice=str2double(get(handles.num_NbSlice,'String')); |
---|
[589] | 1303 | z=mod(num-1,nbslice)+1; |
---|
[387] | 1304 | end |
---|
| 1305 | set(handles.z_index,'String',num2str(z)) |
---|
| 1306 | for ilist=1:nbslice |
---|
| 1307 | list_index{ilist,1}=num2str(ilist); |
---|
| 1308 | end |
---|
| 1309 | set(handles.masklevel,'String',list_index) |
---|
| 1310 | set(handles.masklevel,'Value',z) |
---|
| 1311 | |
---|
| 1312 | %------------------------------------------------------------------------ |
---|
| 1313 | % --- Executes on button press in view_xml. |
---|
[674] | 1314 | %------------------------------------------------------------------------ |
---|
[387] | 1315 | function view_xml_Callback(hObject, eventdata, handles) |
---|
[674] | 1316 | |
---|
| 1317 | % if TimeName defined, open the xml file corresponding to the first file |
---|
| 1318 | % series, else open the xml file corresponding to the second series |
---|
| 1319 | if isempty(get(handles.TimeName,'String'))% open the xml file corresponding to the secodn file series |
---|
| 1320 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
---|
| 1321 | else |
---|
| 1322 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
| 1323 | end |
---|
[387] | 1324 | option=get(handles.view_xml,'String'); |
---|
[674] | 1325 | if isequal(option,'view .xml') |
---|
[494] | 1326 | FileXml=fullfile(RootPath,[SubDir '.xml']); |
---|
| 1327 | if ~exist(FileXml,'file')% case of civ files , removes the extension for subdir |
---|
| 1328 | FileXml=fullfile(RootPath,[regexprep(SubDir,'\..+$','') '.xml']); |
---|
| 1329 | end |
---|
[387] | 1330 | heditxml=editxml(FileXml); |
---|
| 1331 | end |
---|
| 1332 | |
---|
| 1333 | %------------------------------------------------------------------------ |
---|
| 1334 | % --- Executes on button press in CheckMask. |
---|
| 1335 | function CheckMask_Callback(hObject, eventdata, handles) |
---|
| 1336 | %------------------------------------------------------------------------ |
---|
| 1337 | %case of view mask selection |
---|
| 1338 | if isequal(get(handles.CheckMask,'Value'),1) |
---|
[641] | 1339 | [RootPath,SubDir]=read_file_boxes(handles); |
---|
| 1340 | MaskSubDir=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
---|
| 1341 | MaskPath=fullfile(RootPath,[MaskSubDir '.mask']); |
---|
[387] | 1342 | mdetect=0; |
---|
[641] | 1343 | if exist(MaskPath,'dir') |
---|
| 1344 | ListStruct=dir(MaskPath);%look for a mask file |
---|
| 1345 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
---|
| 1346 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
---|
[667] | 1347 | ListFiles=ListCells(1,:);%list of file and dri names |
---|
| 1348 | ListFiles=ListFiles(~check_dir);%list of file names (excluding dir) |
---|
[641] | 1349 | if ~isempty(ListFiles) |
---|
[675] | 1350 | for ifile=1:numel(ListFiles) |
---|
| 1351 | [tild,tild,MaskExt]=fileparts(ListFiles{1}); |
---|
| 1352 | [tild,tild,MaskFile{ifile},i1_series,i2_series,j1_series,j2_series,MaskNomType,MaskFileType]=find_file_series(MaskPath,ListFiles{ifile},0); |
---|
| 1353 | if strcmp(MaskFileType,'image') && isempty(i2_series) && isempty(j2_series) |
---|
| 1354 | mdetect=1; |
---|
| 1355 | end |
---|
| 1356 | if ~strcmp(MaskFile{ifile},MaskFile{1}) |
---|
| 1357 | mdetect=0;% cancel detection test in case of multiple masks, use the brower for selection |
---|
| 1358 | break |
---|
| 1359 | end |
---|
[387] | 1360 | end |
---|
| 1361 | end |
---|
[675] | 1362 | RootPath=MaskPath; |
---|
[648] | 1363 | end |
---|
| 1364 | if mdetect==0 |
---|
[667] | 1365 | MaskFullName=uigetfile_uvmat('pick a mask image file:',RootPath,'image'); |
---|
[648] | 1366 | if isempty(MaskFullName) |
---|
| 1367 | set(handles.CheckMask,'Value',0) |
---|
[387] | 1368 | end |
---|
[648] | 1369 | [MaskPath,MaskName,MaskExt]=fileparts(MaskFullName); |
---|
[667] | 1370 | [tild,tild,MaskFile,i1_series,i2_series,j1_series,j2_series,MaskNomType]=find_file_series(MaskPath,[MaskName MaskExt],0); |
---|
[648] | 1371 | if ~(isempty(i2_series) && isempty(j2_series)) |
---|
| 1372 | MaskNomType='*'; |
---|
| 1373 | end |
---|
[387] | 1374 | end |
---|
[648] | 1375 | Mask.Path=MaskPath; |
---|
[710] | 1376 | if isempty(MaskFile) |
---|
| 1377 | Mask.File=''; |
---|
| 1378 | else |
---|
| 1379 | Mask.File=MaskFile{1}; |
---|
| 1380 | end |
---|
[648] | 1381 | Mask.Ext=MaskExt; |
---|
| 1382 | Mask.NomType=MaskNomType; |
---|
| 1383 | set(handles.CheckMask,'UserData',Mask); |
---|
| 1384 | errormsg=update_mask(handles); |
---|
[387] | 1385 | else % desactivate mask display |
---|
| 1386 | MaskData=get(handles.CheckMask,'UserData'); |
---|
| 1387 | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle) |
---|
[641] | 1388 | delete(MaskData.maskhandle) |
---|
[387] | 1389 | end |
---|
[641] | 1390 | set(handles.CheckMask,'UserData',[]) |
---|
[387] | 1391 | UvData=get(handles.uvmat,'UserData'); |
---|
| 1392 | if isfield(UvData,'MaskName') |
---|
| 1393 | UvData=rmfield(UvData,'MaskName'); |
---|
| 1394 | set(handles.uvmat,'UserData',UvData) |
---|
| 1395 | end |
---|
| 1396 | set(handles.CheckMask,'BackgroundColor',[0.7 0.7 0.7]) |
---|
| 1397 | end |
---|
| 1398 | |
---|
| 1399 | %------------------------------------------------------------------------ |
---|
[641] | 1400 | function errormsg=update_mask(handles) |
---|
[387] | 1401 | %------------------------------------------------------------------------ |
---|
| 1402 | errormsg=[];%default |
---|
[641] | 1403 | Mask=get(handles.CheckMask,'UserData'); |
---|
| 1404 | MaskIndex=1; |
---|
| 1405 | if strcmp(get(handles.z_index,'Visible'),'on') |
---|
| 1406 | MaskIndex=str2num(get(handles.z_index,'String')); |
---|
[387] | 1407 | end |
---|
[641] | 1408 | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
---|
| 1409 | uistack(Mask.maskhandle,'top'); |
---|
| 1410 | end |
---|
| 1411 | MaskName=fullfile_uvmat(Mask.Path,'',Mask.File,Mask.Ext,Mask.NomType,MaskIndex); |
---|
[387] | 1412 | UvData=get(handles.uvmat,'UserData'); |
---|
[641] | 1413 | |
---|
| 1414 | %% update mask image if the mask is new |
---|
[387] | 1415 | if ~ (isfield(UvData,'MaskName') && isequal(UvData.MaskName,MaskName)) |
---|
| 1416 | UvData.MaskName=MaskName; %update the recorded name on UvData |
---|
| 1417 | set(handles.uvmat,'UserData',UvData); |
---|
| 1418 | if ~exist(MaskName,'file') |
---|
[641] | 1419 | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
---|
| 1420 | delete(Mask.maskhandle) |
---|
[387] | 1421 | end |
---|
| 1422 | else |
---|
| 1423 | %read mask image |
---|
[641] | 1424 | [MaskField,tild,errormsg] = read_field(MaskName,'image'); |
---|
[542] | 1425 | if ~isempty(errormsg) |
---|
| 1426 | return |
---|
| 1427 | end |
---|
[641] | 1428 | npxy=size(MaskField.A); |
---|
[387] | 1429 | if length(npxy)>2 |
---|
| 1430 | errormsg=[MaskName ' is not a grey scale image']; |
---|
| 1431 | return |
---|
[641] | 1432 | elseif ~isa(MaskField.A,'uint8') |
---|
[387] | 1433 | errormsg=[MaskName ' is not a 8 bit grey level image']; |
---|
| 1434 | return |
---|
| 1435 | end |
---|
[641] | 1436 | MaskField.ZIndex=MaskIndex; |
---|
[387] | 1437 | %px to phys or other transform on field |
---|
[591] | 1438 | menu_transform=get(handles.TransformName,'String'); |
---|
| 1439 | choice_value=get(handles.TransformName,'Value'); |
---|
[387] | 1440 | transform_name=menu_transform{choice_value};%name of the transform fct given by the menu 'transform_fct' |
---|
[591] | 1441 | transform=get(handles.TransformPath,'UserData'); |
---|
[387] | 1442 | if ~isequal(transform_name,'') && ~isequal(transform_name,'px') |
---|
| 1443 | if isfield(UvData,'XmlData') && isfield(UvData.XmlData{1},'GeometryCalib')%use geometry calib recorded from the ImaDoc xml file as first priority |
---|
| 1444 | Calib=UvData.XmlData{1}.GeometryCalib; |
---|
[641] | 1445 | MaskField=transform(MaskField,UvData.XmlData{1}); |
---|
[387] | 1446 | end |
---|
| 1447 | end |
---|
[641] | 1448 | flagmask=MaskField.A < 200; |
---|
[387] | 1449 | |
---|
| 1450 | %make brown color image |
---|
| 1451 | imflag(:,:,1)=0.9*flagmask; |
---|
| 1452 | imflag(:,:,2)=0.7*flagmask; |
---|
| 1453 | imflag(:,:,3)=zeros(size(flagmask)); |
---|
| 1454 | |
---|
| 1455 | %update mask image |
---|
| 1456 | hmask=[]; %default |
---|
[641] | 1457 | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
---|
| 1458 | hmask=Mask.maskhandle; |
---|
[387] | 1459 | end |
---|
| 1460 | if ~isempty(hmask) |
---|
| 1461 | set(hmask,'CData',imflag) |
---|
| 1462 | set(hmask,'AlphaData',flagmask*0.6) |
---|
[641] | 1463 | set(hmask,'XData',MaskField.AX); |
---|
| 1464 | set(hmask,'YData',MaskField.AY); |
---|
[387] | 1465 | % uistack(hmask,'top') |
---|
| 1466 | else |
---|
[511] | 1467 | axes(handles.PlotAxes) |
---|
[387] | 1468 | hold on |
---|
[641] | 1469 | Mask.maskhandle=image(MaskField.AX,MaskField.AY,imflag,'Tag','mask','HitTest','off','AlphaData',0.6*ones(size(flagmask))); |
---|
| 1470 | set(handles.CheckMask,'UserData',Mask) |
---|
[387] | 1471 | end |
---|
| 1472 | end |
---|
| 1473 | end |
---|
| 1474 | |
---|
| 1475 | %------------------------------------------------------------------------ |
---|
| 1476 | %------------------------------------------------------------------------ |
---|
[713] | 1477 | % III - MAIN InputFileREFRESH FUNCTIONS : 'FRAME PLOT' |
---|
[387] | 1478 | %------------------------------------------------------------------------ |
---|
| 1479 | |
---|
| 1480 | %------------------------------------------------------------------------ |
---|
| 1481 | % --- Executes on button press in runplus: make one step forward and call |
---|
[713] | 1482 | % --- InputFileREFRESH. The step forward is along the fieldname series 1 or 2 depending on |
---|
[387] | 1483 | % --- the scan_i and scan_j check box (exclusive each other) |
---|
| 1484 | function runplus_Callback(hObject, eventdata, handles) |
---|
| 1485 | %------------------------------------------------------------------------ |
---|
[635] | 1486 | |
---|
[387] | 1487 | set(handles.runplus,'BackgroundColor',[1 1 0])%paint the command button in yellow |
---|
| 1488 | drawnow |
---|
[635] | 1489 | increment=str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
---|
| 1490 | if isnan(increment)% case of free increment: move to next available field index |
---|
| 1491 | increment='+'; |
---|
| 1492 | end |
---|
[387] | 1493 | errormsg=runpm(hObject,eventdata,handles,increment); |
---|
| 1494 | if ~isempty(errormsg) |
---|
| 1495 | msgbox_uvmat('ERROR',errormsg); |
---|
| 1496 | end |
---|
| 1497 | set(handles.runplus,'BackgroundColor',[1 0 0])%paint the command button back to red |
---|
| 1498 | |
---|
| 1499 | %------------------------------------------------------------------------ |
---|
| 1500 | % --- Executes on button press in runmin: make one step backward and call |
---|
[713] | 1501 | % --- InputFileREFRESH. The step backward is along the fieldname series 1 or 2 depending on |
---|
[387] | 1502 | % --- the scan_i and scan_j check box (exclusive each other) |
---|
| 1503 | function runmin_Callback(hObject, eventdata, handles) |
---|
| 1504 | %------------------------------------------------------------------------ |
---|
[635] | 1505 | |
---|
[387] | 1506 | set(handles.runmin,'BackgroundColor',[1 1 0])%paint the command button in yellow |
---|
| 1507 | drawnow |
---|
[635] | 1508 | increment=-str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
---|
| 1509 | if isnan(increment)% case of free increment: move to previous available field index |
---|
| 1510 | increment='-'; |
---|
| 1511 | end |
---|
[387] | 1512 | errormsg=runpm(hObject,eventdata,handles,increment); |
---|
| 1513 | if ~isempty(errormsg) |
---|
| 1514 | msgbox_uvmat('ERROR',errormsg); |
---|
| 1515 | end |
---|
| 1516 | set(handles.runmin,'BackgroundColor',[1 0 0])%paint the command button back to red |
---|
| 1517 | |
---|
| 1518 | %------------------------------------------------------------------------ |
---|
| 1519 | % -- Executes on button press in Movie: make a series of +> steps |
---|
| 1520 | function Movie_Callback(hObject, eventdata, handles) |
---|
| 1521 | %------------------------------------------------------------------------ |
---|
[635] | 1522 | |
---|
[387] | 1523 | set(handles.Movie,'BackgroundColor',[1 1 0])%paint the command button in yellow |
---|
| 1524 | drawnow |
---|
[635] | 1525 | increment=str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
---|
| 1526 | if isnan(increment)% case of free increment: move to next available field index |
---|
| 1527 | increment='+'; |
---|
| 1528 | end |
---|
[387] | 1529 | set(handles.STOP,'Visible','on') |
---|
| 1530 | set(handles.speed,'Visible','on') |
---|
| 1531 | set(handles.speed_txt,'Visible','on') |
---|
| 1532 | set(handles.Movie,'BusyAction','queue') |
---|
| 1533 | UvData=get(handles.uvmat,'UserData'); |
---|
| 1534 | |
---|
[435] | 1535 | while get(handles.Movie,'Value')==1 && get(handles.speed,'Value')~=0 && isequal(get(handles.Movie,'BusyAction'),'queue') % enable STOP command |
---|
[387] | 1536 | errormsg=runpm(hObject,eventdata,handles,increment); |
---|
| 1537 | if ~isempty(errormsg) |
---|
| 1538 | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
| 1539 | return |
---|
| 1540 | end |
---|
| 1541 | pause(1.02-get(handles.speed,'Value'))% wait for next image |
---|
| 1542 | end |
---|
| 1543 | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj), |
---|
| 1544 | UvData.aviobj=close(UvData.aviobj); |
---|
| 1545 | set(handles.uvmat,'UserData',UvData); |
---|
| 1546 | end |
---|
| 1547 | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
| 1548 | |
---|
| 1549 | %------------------------------------------------------------------------ |
---|
| 1550 | % -- Executes on button press in Movie: make a series of <- steps |
---|
| 1551 | function MovieBackward_Callback(hObject, eventdata, handles) |
---|
| 1552 | %------------------------------------------------------------------------ |
---|
| 1553 | set(handles.MovieBackward,'BackgroundColor',[1 1 0])%paint the command button in yellow |
---|
| 1554 | drawnow |
---|
[635] | 1555 | increment=-str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
---|
| 1556 | if isnan(increment)% case of free increment: move to next available field index |
---|
| 1557 | increment='-'; |
---|
| 1558 | end |
---|
[387] | 1559 | set(handles.STOP,'Visible','on') |
---|
| 1560 | set(handles.speed,'Visible','on') |
---|
| 1561 | set(handles.speed_txt,'Visible','on') |
---|
| 1562 | set(handles.MovieBackward,'BusyAction','queue') |
---|
| 1563 | UvData=get(handles.uvmat,'UserData'); |
---|
| 1564 | |
---|
[435] | 1565 | while get(handles.MovieBackward,'Value')==1 && get(handles.speed,'Value')~=0 && isequal(get(handles.MovieBackward,'BusyAction'),'queue') % enable STOP command |
---|
[387] | 1566 | errormsg=runpm(hObject,eventdata,handles,increment); |
---|
| 1567 | if ~isempty(errormsg) |
---|
| 1568 | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
| 1569 | return |
---|
| 1570 | end |
---|
| 1571 | pause(1.02-get(handles.speed,'Value'))% wait for next image |
---|
| 1572 | end |
---|
| 1573 | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj), |
---|
| 1574 | UvData.aviobj=close(UvData.aviobj); |
---|
| 1575 | set(handles.uvmat,'UserData',UvData); |
---|
| 1576 | end |
---|
| 1577 | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
| 1578 | |
---|
| 1579 | %------------------------------------------------------------------------ |
---|
| 1580 | function STOP_Callback(hObject, eventdata, handles) |
---|
| 1581 | %------------------------------------------------------------------------ |
---|
| 1582 | set(handles.movie_pair,'BusyAction','Cancel') |
---|
| 1583 | set(handles.movie_pair,'value',0) |
---|
| 1584 | set(handles.Movie,'BusyAction','Cancel') |
---|
| 1585 | set(handles.MovieBackward,'BusyAction','Cancel') |
---|
| 1586 | set(handles.MenuExportMovie,'BusyAction','Cancel') |
---|
[675] | 1587 | %set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
[387] | 1588 | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
| 1589 | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
---|
| 1590 | |
---|
| 1591 | %------------------------------------------------------------------------ |
---|
| 1592 | % --- function activated by runplus and run minus |
---|
| 1593 | function errormsg=runpm(hObject,eventdata,handles,increment) |
---|
| 1594 | %------------------------------------------------------------------------ |
---|
| 1595 | errormsg='';%default |
---|
| 1596 | %% check for movie pair status |
---|
| 1597 | movie_status=get(handles.movie_pair,'Value'); |
---|
| 1598 | if isequal(movie_status,1) |
---|
| 1599 | STOP_Callback(hObject, eventdata, handles)%interrupt movie pair if active |
---|
| 1600 | end |
---|
| 1601 | |
---|
| 1602 | %% read the current input file name(s) and field indices |
---|
| 1603 | InputFile=read_GUI(handles.InputFile); |
---|
| 1604 | InputFile.RootFile=regexprep(InputFile.RootFile,'^[\\/]|[\\/]$','');%suppress possible / or \ separator at the beginning or the end of the string |
---|
| 1605 | InputFile.SubDir=regexprep(InputFile.SubDir,'^[\\/]|[\\/]$','');%suppress possible / or \ separator at the beginning or the end of the string |
---|
| 1606 | FileExt=InputFile.FileExt; |
---|
[675] | 1607 | NomType=InputFile.NomType; |
---|
| 1608 | % i1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
---|
| 1609 | % i2=[];%default |
---|
| 1610 | % if strcmp(get(handles.i2,'Visible'),'on') |
---|
| 1611 | % i2=str2num(get(handles.i2,'String')); |
---|
| 1612 | % end |
---|
| 1613 | % j1=[]; |
---|
| 1614 | % if strcmp(get(handles.j1,'Visible'),'on') |
---|
| 1615 | % j1=stra2num(get(handles.j1,'String')); |
---|
| 1616 | % end |
---|
| 1617 | % j2=j1; |
---|
| 1618 | % if strcmp(get(handles.j2,'Visible'),'on') |
---|
| 1619 | % j2=stra2num(get(handles.j2,'String')); |
---|
| 1620 | % end |
---|
| 1621 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(InputFile.FileIndex);% check back the indices used |
---|
[683] | 1622 | if isempty(i1) |
---|
| 1623 | i1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
---|
| 1624 | elseif isempty(j1) && strcmp(get(handles.j1,'Visible'),'on') |
---|
| 1625 | j1=str2num(get(handles.j1,'String'));%case of indexed movie |
---|
| 1626 | end |
---|
[387] | 1627 | sub_value= get(handles.SubField,'Value'); |
---|
[683] | 1628 | if sub_value % a second input file has been entered |
---|
| 1629 | [InputFile.RootPath_1,InputFile.SubDir_1,InputFile.RootFile_1,InputFile.FileIndex_1,InputFile.FileExt_1,InputFile.NomType_1]=read_file_boxes_1(handles); |
---|
[515] | 1630 | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(InputFile.FileIndex_1);% the indices for the second series taken from FileIndex_1 |
---|
[683] | 1631 | if isempty(i1_1) |
---|
| 1632 | i1_1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
---|
| 1633 | elseif isempty(j1_1) && strcmp(get(handles.j1,'Visible'),'on') |
---|
| 1634 | j1_1=str2num(get(handles.j1,'String'));%case of indexed movie |
---|
| 1635 | end |
---|
[387] | 1636 | else |
---|
| 1637 | filename_1=[]; |
---|
[683] | 1638 | end |
---|
[387] | 1639 | |
---|
| 1640 | %% increment (or decrement) the field indices and update the input filename(s) |
---|
[635] | 1641 | if ~isnumeric(increment)% undefined increment value |
---|
[387] | 1642 | set(handles.CheckFixPair,'Value',0) |
---|
| 1643 | end |
---|
| 1644 | CheckFixPair=get(handles.CheckFixPair,'Value')||(isempty(i2)&&isempty(j2)); |
---|
[427] | 1645 | |
---|
| 1646 | % the pair i1-i2 or j1-j2 is imposed (check box CheckFixPair selected) |
---|
[635] | 1647 | if CheckFixPair && isnumeric(increment) |
---|
[387] | 1648 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
---|
| 1649 | i1=i1+increment; |
---|
| 1650 | i2=i2+increment; |
---|
| 1651 | if sub_value |
---|
| 1652 | i1_1=i1_1+increment; |
---|
| 1653 | i2_1=i2_1+increment; |
---|
[675] | 1654 | end |
---|
[387] | 1655 | else % case of scanning along index j (burst numbers) |
---|
| 1656 | j1=j1+increment; |
---|
| 1657 | j2=j2+increment; |
---|
| 1658 | if sub_value |
---|
| 1659 | j1_1=j1_1+increment; |
---|
| 1660 | j2_1=j2_1+increment; |
---|
| 1661 | end |
---|
| 1662 | end |
---|
[427] | 1663 | |
---|
[675] | 1664 | % the pair i1-i2 or j1-j2 is free (check box CheckFixPair not selected): the list of existing indices recorded in UvData is used |
---|
[387] | 1665 | else |
---|
| 1666 | UvData=get(handles.uvmat,'UserData'); |
---|
| 1667 | ref_i=i1; |
---|
| 1668 | if ~isempty(i2) |
---|
[427] | 1669 | ref_i=floor((i1+i2)/2);% current reference index i |
---|
[387] | 1670 | end |
---|
| 1671 | ref_j=1; |
---|
| 1672 | if ~isempty(j1) |
---|
| 1673 | ref_j=j1; |
---|
| 1674 | if ~isempty(j2) |
---|
[427] | 1675 | ref_j=floor((j1+j2)/2);% current reference index j |
---|
[387] | 1676 | end |
---|
| 1677 | end |
---|
[635] | 1678 | if isnumeric(increment) |
---|
[387] | 1679 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
---|
[427] | 1680 | ref_i=ref_i+increment;% increment the current reference index i |
---|
[387] | 1681 | else % case of scanning along index j (burst numbers) |
---|
[427] | 1682 | ref_j=ref_j+increment;% increment the current reference index j if scan_j option is used |
---|
[387] | 1683 | end |
---|
[388] | 1684 | else % free increment |
---|
[511] | 1685 | runaction=get(gcbo,'tag'); |
---|
[635] | 1686 | if strcmp(increment,'+')% if runplus or movie is activated |
---|
[387] | 1687 | step=1; |
---|
| 1688 | else |
---|
| 1689 | step=-1; |
---|
| 1690 | end |
---|
| 1691 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
---|
| 1692 | ref_i=ref_i+step; |
---|
[512] | 1693 | while ref_i>=0 && size(UvData.i1_series{1},3)>=ref_i+1 && UvData.i1_series{1}(1,ref_j+1,ref_i+1)==0 |
---|
[387] | 1694 | ref_i=ref_i+step; |
---|
| 1695 | end |
---|
| 1696 | else % case of scanning along index j (burst numbers) |
---|
| 1697 | ref_j=ref_j+step; |
---|
[512] | 1698 | while ref_j>=0 && size(UvData.i1_series{1},2)>=ref_j+1 && UvData.i1_series{1}(1,ref_j+1,ref_i+1)==0 |
---|
[387] | 1699 | ref_j=ref_j+step; |
---|
| 1700 | end |
---|
| 1701 | end |
---|
| 1702 | end |
---|
| 1703 | if ref_i<0 |
---|
| 1704 | errormsg='minimum i index reached'; |
---|
| 1705 | elseif ref_j<0 |
---|
| 1706 | errormsg='minimum j index reached'; |
---|
[512] | 1707 | elseif ref_i+1>size(UvData.i1_series{1},3) |
---|
[511] | 1708 | errormsg='maximum i index reached (reload the input file to update the index bound)'; |
---|
[387] | 1709 | elseif ref_j+1>size(UvData.i1_series{1},2) |
---|
[511] | 1710 | errormsg='maximum j index reached (reload the input file to update the index bound)'; |
---|
[387] | 1711 | end |
---|
[511] | 1712 | if ~isempty(errormsg),return,end |
---|
[512] | 1713 | siz=size(UvData.i1_series{1}); |
---|
[515] | 1714 | ref_indices=ref_i*siz(1)*siz(2)+ref_j*siz(1)+1:ref_i*siz(1)*siz(2)+(ref_j+1)*siz(1); |
---|
[512] | 1715 | i1_subseries=UvData.i1_series{1}(ref_indices); |
---|
| 1716 | ref_indices=ref_indices(i1_subseries>0); |
---|
| 1717 | if isempty(ref_indices)% case of pairs (free index i) |
---|
[515] | 1718 | ref_indices=ref_i*siz(1)*siz(2)+1:(ref_i+1)*siz(1)*siz(2); |
---|
[512] | 1719 | i1_subseries=UvData.i1_series{1}(ref_indices); |
---|
| 1720 | ref_indices=ref_indices(i1_subseries>0); |
---|
[511] | 1721 | end |
---|
[512] | 1722 | if isempty(ref_indices),errormsg='no next frame: set num_IndexIncrement =''*'' to reach the next existing file';return |
---|
[387] | 1723 | end |
---|
[512] | 1724 | i1=UvData.i1_series{1}(ref_indices(end)); |
---|
[387] | 1725 | if ~isempty(UvData.i2_series{1}) |
---|
[512] | 1726 | i2=UvData.i2_series{1}(ref_indices(end)); |
---|
[387] | 1727 | end |
---|
| 1728 | if ~isempty(UvData.j1_series{1}) |
---|
[512] | 1729 | j1=UvData.j1_series{1}(ref_indices(end)); |
---|
[387] | 1730 | end |
---|
| 1731 | if ~isempty(UvData.j2_series{1}) |
---|
[512] | 1732 | j2=UvData.j2_series{1}(ref_indices(end)); |
---|
[515] | 1733 | end |
---|
| 1734 | |
---|
[675] | 1735 | % case of a second file series |
---|
[515] | 1736 | if sub_value |
---|
| 1737 | ref_i_1=i1_1; |
---|
| 1738 | if ~isempty(i2_1) |
---|
| 1739 | ref_i_1=floor((i1_1+i2_1)/2);% current reference index i |
---|
| 1740 | end |
---|
| 1741 | ref_j_1=1; |
---|
| 1742 | if ~isempty(j1_1) |
---|
| 1743 | ref_j_1=j1_1; |
---|
| 1744 | if ~isempty(j2_1) |
---|
| 1745 | ref_j_1=floor((j1_1+j2_1)/2);% current reference index j |
---|
| 1746 | end |
---|
| 1747 | end |
---|
[635] | 1748 | if isnumeric(increment) |
---|
[515] | 1749 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
---|
| 1750 | ref_i_1=ref_i_1+increment;% increment the current reference index i |
---|
| 1751 | else % case of scanning along index j (burst numbers) |
---|
| 1752 | ref_j_1=ref_j_1+increment;% increment the current reference index j if scan_j option is used |
---|
| 1753 | end |
---|
| 1754 | else % free increment, synchronise the ref indices with the first series |
---|
| 1755 | ref_i_1=ref_i; |
---|
[675] | 1756 | ref_j_1=ref_j; |
---|
[515] | 1757 | end |
---|
| 1758 | if numel(UvData.i1_series)==1 |
---|
| 1759 | UvData.i1_series{2}=UvData.i1_series{1}; |
---|
| 1760 | UvData.j1_series{2}=UvData.j1_series{1}; |
---|
| 1761 | UvData.i2_series{2}=UvData.i2_series{1}; |
---|
| 1762 | UvData.j2_series{2}=UvData.j2_series{1}; |
---|
| 1763 | end |
---|
| 1764 | if ref_i_1<0 |
---|
| 1765 | errormsg='minimum i index reached'; |
---|
| 1766 | elseif ref_j_1<0 |
---|
| 1767 | errormsg='minimum j index reached'; |
---|
| 1768 | elseif ref_i_1+1>size(UvData.i1_series{2},3) |
---|
| 1769 | errormsg='maximum i index reached for the second series (reload the input file to update the index bound)'; |
---|
| 1770 | elseif ref_j_1+1>size(UvData.i1_series{2},2) |
---|
| 1771 | errormsg='maximum j index reached for the second series(reload the input file to update the index bound)'; |
---|
| 1772 | end |
---|
| 1773 | if ~isempty(errormsg),return,end |
---|
| 1774 | siz=size(UvData.i1_series{2}); |
---|
| 1775 | ref_indices=ref_i_1*siz(1)*siz(2)+ref_j_1*siz(1)+1:ref_i_1*siz(1)*siz(2)+(ref_j_1+1)*siz(1); |
---|
| 1776 | i1_subseries=UvData.i1_series{2}(ref_indices); |
---|
| 1777 | ref_indices=ref_indices(i1_subseries>0); |
---|
| 1778 | if isempty(ref_indices)% case of pairs (free index i) |
---|
| 1779 | ref_indices=ref_i_1*siz(1)*siz(2)+1:(ref_i_1+1)*siz(1)*siz(2); |
---|
| 1780 | i1_subseries=UvData.i1_series{2}(ref_indices); |
---|
| 1781 | ref_indices=ref_indices(i1_subseries>0); |
---|
| 1782 | end |
---|
| 1783 | i1_1=UvData.i1_series{2}(ref_indices(end)); |
---|
[427] | 1784 | if ~isempty(UvData.i2_series{2}) |
---|
[515] | 1785 | i2_1=UvData.i2_series{2}(ref_indices(end)); |
---|
[427] | 1786 | end |
---|
| 1787 | if ~isempty(UvData.j1_series{2}) |
---|
[515] | 1788 | j1_1=UvData.j1_series{2}(ref_indices(end)); |
---|
[427] | 1789 | end |
---|
| 1790 | if ~isempty(UvData.j2_series{2}) |
---|
[515] | 1791 | j2_1=UvData.j2_series{1}(ref_indices(end)); |
---|
[675] | 1792 | end |
---|
[515] | 1793 | else% the second series (if needed) is the same file as the first |
---|
| 1794 | i1_1=i1; |
---|
| 1795 | i2_1=i2; |
---|
| 1796 | j1_1=j1; |
---|
| 1797 | j2_1=j2; |
---|
[387] | 1798 | end |
---|
| 1799 | end |
---|
| 1800 | filename=fullfile_uvmat(InputFile.RootPath,InputFile.SubDir,InputFile.RootFile,FileExt,NomType,i1,i2,j1,j2); |
---|
[675] | 1801 | |
---|
[713] | 1802 | %% inputfilerefresh plots |
---|
[387] | 1803 | if sub_value |
---|
[428] | 1804 | filename_1=fullfile_uvmat(InputFile.RootPath_1,InputFile.SubDir_1,InputFile.RootFile_1,InputFile.FileExt_1,InputFile.NomType_1,i1_1,i2_1,j1_1,j2_1); |
---|
[675] | 1805 | errormsg=refresh_field(handles,filename,filename_1,i1,i2,j1,j2,i1_1,i2_1,j1_1,j2_1); |
---|
| 1806 | else |
---|
| 1807 | errormsg=refresh_field(handles,filename,filename_1,i1,i2,j1,j2); |
---|
[387] | 1808 | end |
---|
[713] | 1809 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0]) |
---|
[387] | 1810 | |
---|
| 1811 | %% update the index counters if the index move is successfull |
---|
| 1812 | if isempty(errormsg) |
---|
| 1813 | set(handles.i1,'String',num2stra(i1,NomType,1)); |
---|
| 1814 | if isequal(i2,i1) |
---|
| 1815 | set(handles.i2,'String',''); |
---|
| 1816 | else |
---|
| 1817 | set(handles.i2,'String',num2stra(i2,NomType,1)); |
---|
| 1818 | end |
---|
| 1819 | set(handles.j1,'String',num2stra(j1,NomType,2)); |
---|
| 1820 | if isequal(j2,j1) |
---|
| 1821 | set(handles.j2,'String',''); |
---|
| 1822 | else |
---|
| 1823 | set(handles.j2,'String',num2stra(j2,NomType,2)); |
---|
| 1824 | end |
---|
| 1825 | indices=fullfile_uvmat('','','','',NomType,i1,i2,j1,j2); |
---|
| 1826 | set(handles.FileIndex,'String',indices); |
---|
| 1827 | if ~isempty(filename_1) |
---|
[428] | 1828 | indices_1=fullfile_uvmat('','','','',InputFile.NomType_1,i1_1,i2_1,j1_1,j2_1); |
---|
[387] | 1829 | set(handles.FileIndex_1,'String',indices_1); |
---|
| 1830 | end |
---|
| 1831 | if isequal(movie_status,1) |
---|
| 1832 | set(handles.movie_pair,'Value',1) |
---|
| 1833 | movie_pair_Callback(hObject, eventdata, handles); %reactivate moviepair if it was activated |
---|
[675] | 1834 | else |
---|
| 1835 | if isempty(i2), set(handles.i2,'String',''); end % suppress the second index display if not used |
---|
| 1836 | if isempty(j2), set(handles.j2,'String',''); end |
---|
[387] | 1837 | end |
---|
[675] | 1838 | set(handles.i1,'BackgroundColor',[1 1 1]) |
---|
| 1839 | set(handles.i2,'BackgroundColor',[1 1 1]) |
---|
| 1840 | set(handles.j1,'BackgroundColor',[1 1 1]) |
---|
| 1841 | set(handles.j2,'BackgroundColor',[1 1 1]) |
---|
| 1842 | set(handles.FileIndex,'BackgroundColor',[1 1 1]) |
---|
| 1843 | set(handles.FileIndex_1,'BackgroundColor',[1 1 1]) |
---|
[387] | 1844 | end |
---|
| 1845 | |
---|
| 1846 | %------------------------------------------------------------------------ |
---|
| 1847 | % --- Executes on button press in movie_pair: create an alternating movie with two view |
---|
| 1848 | function movie_pair_Callback(hObject, eventdata, handles) |
---|
| 1849 | %------------------------------------------------------------------------ |
---|
[622] | 1850 | |
---|
[387] | 1851 | %% stop movie action if the movie_pair button is off |
---|
| 1852 | if ~get(handles.movie_pair,'value') |
---|
| 1853 | set(handles.movie_pair,'BusyAction','Cancel')%stop movie pair if button is 'off' |
---|
| 1854 | set(handles.i2,'String','') |
---|
| 1855 | set(handles.j2,'String','') |
---|
[675] | 1856 | set(handles.Dt_txt,'String','') |
---|
[387] | 1857 | return |
---|
| 1858 | else |
---|
| 1859 | set(handles.movie_pair,'BusyAction','queue') |
---|
[713] | 1860 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0]) |
---|
[387] | 1861 | end |
---|
| 1862 | |
---|
| 1863 | %% initialisation |
---|
| 1864 | set(handles.movie_pair,'BackgroundColor',[1 1 0])%paint the command button in yellow |
---|
| 1865 | drawnow |
---|
[526] | 1866 | list_fields=get(handles.FieldName,'String');% list menu fields |
---|
| 1867 | index_fields=get(handles.FieldName,'Value');% selected string index |
---|
[387] | 1868 | FieldName=list_fields{index_fields}; % selected field |
---|
| 1869 | UvData=get(handles.uvmat,'UserData'); |
---|
| 1870 | if isequal(FieldName,'image') |
---|
[512] | 1871 | index=1; |
---|
[387] | 1872 | [RootPath,SubDir,RootFile,FileIndices,Ext]=read_file_boxes(handles); |
---|
| 1873 | NomType=get(handles.NomType,'String'); |
---|
| 1874 | else |
---|
[526] | 1875 | list_fields=get(handles.FieldName_1,'String');% list menu fields |
---|
| 1876 | index_fields=get(handles.FieldName_1,'Value');% selected string index |
---|
[387] | 1877 | FieldName=list_fields{index_fields}; % selected field |
---|
| 1878 | if isequal(FieldName,'image') |
---|
[512] | 1879 | index=2; |
---|
[709] | 1880 | [RootPath,SubDir,RootFile,FileIndex_1,Ext,NomType]=read_file_boxes_1(handles);% get info from the second input line |
---|
[387] | 1881 | else |
---|
| 1882 | msgbox_uvmat('ERROR','an image or movie must be first introduced as input') |
---|
| 1883 | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
---|
| 1884 | set(handles.movie_pair,'Value',0) |
---|
| 1885 | return |
---|
| 1886 | end |
---|
| 1887 | end |
---|
| 1888 | num_i1=str2num(get(handles.i1,'String')); |
---|
| 1889 | num_j1=stra2num(get(handles.j1,'String')); |
---|
| 1890 | num_i2=str2num(get(handles.i2,'String')); |
---|
| 1891 | num_j2=stra2num(get(handles.j2,'String')); |
---|
[582] | 1892 | imaname_1=''; |
---|
[387] | 1893 | if isempty(num_j2) |
---|
[582] | 1894 | if isempty(num_i2) |
---|
| 1895 | if strcmp(get(handles.j2,'Visible'),'on') %if the j box is visible |
---|
| 1896 | imaname_1=fullfile_uvmat(RootPath,SubDir,RootFile,Ext,NomType,num_i1,[],num_j1+1); |
---|
| 1897 | end |
---|
| 1898 | if exist(imaname_1,'file') |
---|
[598] | 1899 | num_j2=num_j1+1;% look by default for the next j index as the second file |
---|
| 1900 | set(handles.j2,'String',num2stra(num_j2,NomType)); |
---|
[582] | 1901 | else |
---|
| 1902 | imaname_1=fullfile_uvmat(RootPath,SubDir,RootFile,Ext,NomType,num_i1+1,[],num_j1); |
---|
| 1903 | if exist(imaname_1,'file') |
---|
| 1904 | num_i2=num_i1+1; |
---|
| 1905 | set(handles.i2,'String',num2str(num_i2)); |
---|
| 1906 | else |
---|
| 1907 | msgbox_uvmat('ERROR', 'a second image index i2 or j2 is needed to show the pair as a movie') |
---|
| 1908 | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
---|
| 1909 | set(handles.movie_pair,'Value',0) |
---|
| 1910 | return |
---|
| 1911 | end |
---|
| 1912 | end |
---|
[387] | 1913 | else |
---|
| 1914 | num_j2=num_j1;%repeat the index i1 by default |
---|
| 1915 | end |
---|
| 1916 | end |
---|
| 1917 | if isempty(num_i2) |
---|
| 1918 | num_i2=num_i1;%repeat the index i1 by default |
---|
| 1919 | end |
---|
[709] | 1920 | if isempty(num_j1) |
---|
| 1921 | num_j1=1; |
---|
| 1922 | end |
---|
| 1923 | if isempty(num_j2) |
---|
| 1924 | num_j2=num_j1;%repeat the index i1 by default |
---|
| 1925 | end |
---|
[439] | 1926 | imaname_1=fullfile_uvmat(RootPath,SubDir,RootFile,Ext,NomType,num_i2,[],num_j2); |
---|
[512] | 1927 | if strcmp(NomType,'*') |
---|
| 1928 | num_frame=num_i2; |
---|
| 1929 | else |
---|
| 1930 | num_frame=num_j2; |
---|
| 1931 | end |
---|
[387] | 1932 | if ~exist(imaname_1,'file') |
---|
| 1933 | msgbox_uvmat('ERROR',['second input open (-) ' imaname_1 ' not found']); |
---|
| 1934 | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
---|
| 1935 | set(handles.movie_pair,'Value',0) |
---|
| 1936 | return |
---|
| 1937 | end |
---|
| 1938 | |
---|
[675] | 1939 | %% display time interval for the image pair |
---|
[684] | 1940 | if isfield(UvData,'XmlData')&&isfield(UvData.XmlData{1},'Time')... |
---|
| 1941 | && size(UvData.XmlData{1}.Time,1)>=num_i2+1 && size(UvData.XmlData{1}.Time,2)>=num_j2+1 |
---|
[675] | 1942 | dt=(UvData.XmlData{1}.Time(num_i2+1,num_j2+1)-UvData.XmlData{1}.Time(num_i1+1,num_j1+1)); |
---|
| 1943 | if isfield(UvData,'TimeUnit') |
---|
| 1944 | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' m' UvData.TimeUnit] ) |
---|
| 1945 | else |
---|
| 1946 | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' 10^(-3)'] ) |
---|
| 1947 | end |
---|
| 1948 | else |
---|
| 1949 | set(handles.Dt_txt,'String','') |
---|
| 1950 | end |
---|
| 1951 | |
---|
[512] | 1952 | %% get the first image |
---|
| 1953 | %Field.AName='image'; |
---|
| 1954 | if index==1 |
---|
| 1955 | Field_a=UvData.Field;% movie on the second field |
---|
[387] | 1956 | else |
---|
[512] | 1957 | Field_a=UvData.Field_1;% movie on the first field |
---|
[387] | 1958 | end |
---|
| 1959 | |
---|
[512] | 1960 | %% read the second image |
---|
| 1961 | MovieObject=[]; |
---|
| 1962 | if numel(UvData.MovieObject)>=index |
---|
| 1963 | MovieObject=UvData.MovieObject{index}; |
---|
[387] | 1964 | end |
---|
[549] | 1965 | [Field_b,ParamOut,errormsg] = read_field(imaname_1,UvData.FileType{index},MovieObject,num_frame); |
---|
[387] | 1966 | |
---|
| 1967 | %px to phys or other transform on field |
---|
[591] | 1968 | transform=get(handles.TransformPath,'UserData'); |
---|
[512] | 1969 | if ~isempty(transform) |
---|
| 1970 | if isfield(UvData,'XmlData') && numel(UvData.XmlData)>=index %use geometry calib recorded from the ImaDoc xml file as first priority |
---|
| 1971 | if index==2 |
---|
| 1972 | Field_a=transform(Field_a,UvData.XmlData{index});%the first field has been stored without transform |
---|
| 1973 | end |
---|
[701] | 1974 | if nargin(transform)>=2 |
---|
[512] | 1975 | Field_b=transform(Field_b,UvData.XmlData{index}); |
---|
[701] | 1976 | else |
---|
| 1977 | Field_b=transform(Field_b); |
---|
| 1978 | end |
---|
[387] | 1979 | end |
---|
| 1980 | end |
---|
| 1981 | |
---|
[675] | 1982 | % make movie until movie speed is set to 0 or STOP is activated |
---|
[511] | 1983 | hima=findobj(handles.PlotAxes,'Tag','ima');% %handles.PlotAxes =main plotting window (A GENERALISER) |
---|
[387] | 1984 | set(handles.STOP,'Visible','on') |
---|
| 1985 | set(handles.speed,'Visible','on') |
---|
| 1986 | set(handles.speed_txt,'Visible','on') |
---|
[675] | 1987 | set(handles.i2,'BackgroundColor',[1 1 1])% mark the edit box in white to indicate its use as input |
---|
| 1988 | set(handles.j2,'BackgroundColor',[1 1 1])% mark the edit box in white to indicate its use as input |
---|
| 1989 | set(handles.FileIndex,'BackgroundColor',[1 1 1])% mark the edit box in white to indicate its use as input |
---|
[710] | 1990 | while get(handles.speed,'Value')~=0 && isequal(get(handles.movie_pair,'BusyAction'),'queue') % enable STOP command |
---|
[387] | 1991 | % read and plot the series of images in non erase mode |
---|
| 1992 | set(hima,'CData',Field_b.A); |
---|
| 1993 | pause(1.02-get(handles.speed,'Value'));% wait for next image |
---|
| 1994 | set(hima,'CData',Field_a.A); |
---|
| 1995 | pause(1.02-get(handles.speed,'Value'));% wait for next image |
---|
| 1996 | end |
---|
| 1997 | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
---|
[675] | 1998 | set(handles.movie_pair,'Value',0) |
---|
| 1999 | set(handles.Dt_txt,'String','') |
---|
[387] | 2000 | |
---|
| 2001 | %------------------------------------------------------------------------ |
---|
[713] | 2002 | % --- Executes on button press in InputFileREFRESH. |
---|
| 2003 | function REFRESH_Callback(hObject, eventdata, handles) |
---|
[387] | 2004 | %------------------------------------------------------------------------ |
---|
[713] | 2005 | set(handles.REFRESH,'BackgroundColor',[1 1 0])%paint the command button in yellow |
---|
[387] | 2006 | drawnow |
---|
[515] | 2007 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
[675] | 2008 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(FileIndex);% check back the indices used |
---|
| 2009 | if isempty(i2), set(handles.i2,'String',''); end % suppress the second index display if not used |
---|
| 2010 | if isempty(j2), set(handles.j2,'String',''); end |
---|
[515] | 2011 | filename=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt]; |
---|
| 2012 | filename_1='';%default |
---|
| 2013 | FileIndex_1=''; |
---|
[387] | 2014 | if get(handles.SubField,'Value') |
---|
[515] | 2015 | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
---|
| 2016 | filename_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1]; |
---|
[387] | 2017 | end |
---|
| 2018 | num_i1=stra2num(get(handles.i1,'String')); |
---|
| 2019 | num_i2=stra2num(get(handles.i2,'String')); |
---|
| 2020 | num_j1=stra2num(get(handles.j1,'String')); |
---|
| 2021 | num_j2=stra2num(get(handles.j2,'String')); |
---|
[609] | 2022 | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(FileIndex_1);% get the indices of the second series from the string FileIndex_1 |
---|
| 2023 | if isempty(j1_1)% case of movies, the index is not given by file index |
---|
| 2024 | j1_1=num_j1; |
---|
| 2025 | end |
---|
[387] | 2026 | |
---|
[515] | 2027 | errormsg=refresh_field(handles,filename,filename_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1); |
---|
[387] | 2028 | |
---|
| 2029 | if ~isempty(errormsg) |
---|
| 2030 | msgbox_uvmat('ERROR',errormsg); |
---|
[714] | 2031 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 1])% keep button color magenta, input not succesfull |
---|
[387] | 2032 | else |
---|
| 2033 | set(handles.i1,'BackgroundColor',[1 1 1]) |
---|
| 2034 | set(handles.i2,'BackgroundColor',[1 1 1]) |
---|
| 2035 | set(handles.j1,'BackgroundColor',[1 1 1]) |
---|
| 2036 | set(handles.j2,'BackgroundColor',[1 1 1]) |
---|
| 2037 | set(handles.FileIndex,'BackgroundColor',[1 1 1]) |
---|
[681] | 2038 | set(handles.FileIndex_1,'BackgroundColor',[1 1 1]) |
---|
[714] | 2039 | set(handles.REFRESH,'BackgroundColor',[1 0 0])% set button color to red, update successfull |
---|
[387] | 2040 | end |
---|
| 2041 | |
---|
| 2042 | %------------------------------------------------------------------------ |
---|
[713] | 2043 | % --- read the input files and inputfilerefresh all the plots, including projection. |
---|
[387] | 2044 | % OUTPUT: |
---|
| 2045 | % errormsg: error message char string =[] by default |
---|
| 2046 | % INPUT: |
---|
[675] | 2047 | % FileName: first input file (=[] in the absence of input file) |
---|
| 2048 | % FileName_1: second input file (=[] in the asbsence of second input file) |
---|
[387] | 2049 | % num_i1,num_i2,num_j1,num_j2; frame indices |
---|
[675] | 2050 | % i1_1,i2_1,j1_1,j2_1: frame indices for the second input file (needed if FileName_1 is not empty) |
---|
| 2051 | %------------------------------------------------------------------------ |
---|
[515] | 2052 | function errormsg=refresh_field(handles,FileName,FileName_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1) |
---|
[387] | 2053 | %------------------------------------------------------------------------ |
---|
| 2054 | |
---|
| 2055 | %% initialisation |
---|
[714] | 2056 | pointer=get(handles.uvmat,'Pointer'); |
---|
| 2057 | set(handles.uvmat,'Pointer','watch') |
---|
| 2058 | drawnow |
---|
[387] | 2059 | if ~exist('Field','var') |
---|
| 2060 | Field={}; |
---|
| 2061 | end |
---|
| 2062 | UvData=get(handles.uvmat,'UserData'); |
---|
| 2063 | if ishandle(handles.UVMAT_title) %remove title panel on uvmat |
---|
| 2064 | delete(handles.UVMAT_title) |
---|
| 2065 | end |
---|
| 2066 | |
---|
| 2067 | %% determine the main input file information for action |
---|
[450] | 2068 | if ~exist(FileName,'file') |
---|
| 2069 | errormsg=['input file ' FileName ' does not exist']; |
---|
[387] | 2070 | return |
---|
| 2071 | end |
---|
| 2072 | NomType=get(handles.NomType,'String'); |
---|
[494] | 2073 | NomType_1=''; |
---|
| 2074 | if strcmp(get(handles.NomType_1,'Visible'),'on') |
---|
| 2075 | NomType_1=get(handles.NomType_1,'String'); |
---|
| 2076 | end |
---|
[387] | 2077 | %update the z position index |
---|
[589] | 2078 | mode_slice=get(handles.slices,'String'); |
---|
| 2079 | if strcmp(mode_slice,'volume') |
---|
[387] | 2080 | z_index=num_j1; |
---|
| 2081 | set(handles.z_index,'String',num2str(z_index)) |
---|
| 2082 | else |
---|
[589] | 2083 | nbslice=str2num(get(handles.num_NbSlice,'String')); |
---|
[387] | 2084 | z_index=mod(num_i1-1,nbslice)+1; |
---|
| 2085 | set(handles.z_index,'String',num2str(z_index)) |
---|
| 2086 | end |
---|
[713] | 2087 | % inputfilerefresh menu for save_mask if relevant |
---|
[387] | 2088 | masknumber=get(handles.masklevel,'String'); |
---|
| 2089 | if length(masknumber)>=z_index |
---|
| 2090 | set(handles.masklevel,'Value',z_index) |
---|
| 2091 | end |
---|
| 2092 | |
---|
[515] | 2093 | %% test for need of tps |
---|
| 2094 | check_proj_tps=0; |
---|
| 2095 | if (strcmp(UvData.FileType{1},'civdata')||strcmp(UvData.FileType{1},'civx')) |
---|
[622] | 2096 | for iobj=1:numel(UvData.ProjObject) |
---|
| 2097 | if isfield(UvData.ProjObject{iobj},'ProjMode')&& strcmp(UvData.ProjObject{iobj}.ProjMode,'interp_tps') |
---|
[515] | 2098 | check_proj_tps=1; |
---|
| 2099 | break |
---|
| 2100 | end |
---|
| 2101 | end |
---|
| 2102 | end |
---|
| 2103 | |
---|
[507] | 2104 | %% read the first input field |
---|
[421] | 2105 | ParamIn.ColorVar='';%default variable name for vector color |
---|
[445] | 2106 | frame_index=1;%default |
---|
[507] | 2107 | FieldName='';%default |
---|
| 2108 | VelType='';%default |
---|
| 2109 | switch UvData.FileType{1} |
---|
| 2110 | case {'civx','civdata','netcdf'}; |
---|
[526] | 2111 | list_fields=get(handles.FieldName,'String');% list menu fields |
---|
| 2112 | FieldName= list_fields{get(handles.FieldName,'Value')}; % selected field |
---|
[507] | 2113 | if ~strcmp(FieldName,'get_field...') |
---|
| 2114 | if get(handles.FixVelType,'Value') |
---|
| 2115 | VelTypeList=get(handles.VelType,'String'); |
---|
| 2116 | VelType=VelTypeList{get(handles.VelType,'Value')}; |
---|
[387] | 2117 | end |
---|
[507] | 2118 | end |
---|
[576] | 2119 | % case of input vector field, get the scalar used for vector color |
---|
[517] | 2120 | if ~isempty(regexp(FieldName,'^vec(')) |
---|
[507] | 2121 | list_code=get(handles.ColorCode,'String');% list menu fields |
---|
| 2122 | index_code=get(handles.ColorCode,'Value');% selected string index |
---|
| 2123 | if ~strcmp(list_code{index_code},'black') && ~strcmp(list_code{index_code},'white') |
---|
| 2124 | list_code=get(handles.ColorScalar,'String');% list menu fields |
---|
| 2125 | index_code=get(handles.ColorScalar,'Value');% selected string index |
---|
| 2126 | ParamIn.ColorVar= list_code{index_code}; % selected field |
---|
[387] | 2127 | end |
---|
[507] | 2128 | end |
---|
| 2129 | case {'video','mmreader'} |
---|
| 2130 | ParamIn=UvData.MovieObject{1}; |
---|
[683] | 2131 | if strcmp(NomType,'*') |
---|
| 2132 | frame_index=num_i1;%frame index from a single movies or multimage |
---|
[507] | 2133 | else |
---|
[683] | 2134 | frame_index=num_j1;% frame index from a set of indexed movies |
---|
[507] | 2135 | end |
---|
| 2136 | case 'multimage' |
---|
| 2137 | if ~strcmp(NomType,'*') |
---|
| 2138 | frame_index=num_j1;%frame index for movies or multimage |
---|
| 2139 | else |
---|
| 2140 | frame_index=num_i1; |
---|
| 2141 | end |
---|
| 2142 | case 'vol' %TODO: update |
---|
| 2143 | if isfield(UvData.XmlData,'Npy') && isfield(UvData.XmlData,'Npx') |
---|
| 2144 | ParamIn.Npy=UvData.XmlData.Npy; |
---|
| 2145 | ParamIn.Npx=UvData.XmlData.Npx; |
---|
| 2146 | else |
---|
| 2147 | errormsg='Npx and Npy need to be defined in the xml file for volume images .vol'; |
---|
| 2148 | return |
---|
| 2149 | end |
---|
[387] | 2150 | end |
---|
[507] | 2151 | if isstruct (ParamIn) |
---|
[517] | 2152 | ParamIn.FieldName=FieldName; |
---|
| 2153 | ParamIn.VelType=VelType; |
---|
[648] | 2154 | ParamIn.Coord_x=get(handles.Coord_x,'String'); |
---|
[646] | 2155 | ParamIn.Coord_y=get(handles.Coord_y,'Data'); |
---|
[507] | 2156 | end |
---|
[517] | 2157 | check_tps = 0; |
---|
[515] | 2158 | if strcmp(UvData.FileType{1},'civdata')&&~strcmp(ParamIn.FieldName,'velocity')&&~strcmp(ParamIn.FieldName,'get_field...') |
---|
| 2159 | check_tps=1;%tps needed to get the requested field |
---|
| 2160 | end |
---|
[507] | 2161 | [Field{1},ParamOut,errormsg] = read_field(FileName,UvData.FileType{1},ParamIn,frame_index); |
---|
| 2162 | if ~isempty(errormsg) |
---|
[527] | 2163 | errormsg=['uvmat / refresh_field / read_field( ' FileName ') / ' errormsg]; |
---|
[507] | 2164 | return |
---|
| 2165 | end |
---|
| 2166 | if isfield(ParamOut,'Npx')&& isfield(ParamOut,'Npy') |
---|
| 2167 | set(handles.num_Npx,'String',num2str(ParamOut.Npx));% display image size on the interface |
---|
| 2168 | set(handles.num_Npy,'String',num2str(ParamOut.Npy)); |
---|
| 2169 | end |
---|
| 2170 | Field{1}.ZIndex=z_index; %used for multiplane 3D calibration |
---|
[387] | 2171 | |
---|
[450] | 2172 | %% choose and read a second field FileName_1 if defined |
---|
[387] | 2173 | VelType_1=[];%default |
---|
| 2174 | FieldName_1=[]; |
---|
[496] | 2175 | ParamIn_1=[]; |
---|
[387] | 2176 | ParamOut_1=[]; |
---|
[445] | 2177 | frame_index_1=1; |
---|
[450] | 2178 | if ~isempty(FileName_1) |
---|
| 2179 | if ~exist(FileName_1,'file') |
---|
| 2180 | errormsg=['second file ' FileName_1 ' does not exist']; |
---|
[387] | 2181 | return |
---|
| 2182 | end |
---|
[404] | 2183 | switch UvData.FileType{2} |
---|
[387] | 2184 | case {'civx','civdata','netcdf'}; |
---|
[526] | 2185 | list_fields=get(handles.FieldName_1,'String');% list menu fields |
---|
[520] | 2186 | if ischar(list_fields),list_fields={list_fields};end |
---|
[526] | 2187 | FieldName_1= list_fields{get(handles.FieldName_1,'Value')}; % selected field |
---|
[387] | 2188 | if ~strcmp(FieldName,'get_field...') |
---|
[389] | 2189 | if get(handles.FixVelType,'Value') |
---|
| 2190 | VelTypeList=get(handles.VelType_1,'String'); |
---|
| 2191 | VelType_1=VelTypeList{get(handles.VelType_1,'Value')};% read the velocity type. |
---|
[387] | 2192 | end |
---|
| 2193 | end |
---|
[405] | 2194 | if strcmp(FieldName_1,'velocity')&& strcmp(get(handles.ColorCode,'Visible'),'on') |
---|
| 2195 | list_code=get(handles.ColorCode,'String');% list menu fields |
---|
| 2196 | index_code=get(handles.ColorCode,'Value');% selected string index |
---|
[387] | 2197 | if ~strcmp(list_code{index_code},'black') && ~strcmp(list_code{index_code},'white') |
---|
[405] | 2198 | list_code=get(handles.ColorScalar,'String');% list menu fields |
---|
| 2199 | index_code=get(handles.ColorScalar,'Value');% selected string index |
---|
| 2200 | ParamIn_1.ColorVar= list_code{index_code}; % selected field for vector color display |
---|
[387] | 2201 | end |
---|
| 2202 | end |
---|
[435] | 2203 | case {'video','mmreader'} |
---|
[450] | 2204 | ParamIn_1=UvData.MovieObject{2}; |
---|
[445] | 2205 | if ~strcmp(NomType_1,'*') |
---|
[515] | 2206 | frame_index_1=j1_1;%frame index for movies or multimage |
---|
[445] | 2207 | else |
---|
[515] | 2208 | frame_index_1=i1_1; |
---|
[445] | 2209 | end |
---|
| 2210 | case 'multimage' |
---|
[609] | 2211 | if strcmp(NomType_1,'*')%frame index for movies or multimage |
---|
| 2212 | frame_index_1=i1_1; |
---|
[445] | 2213 | else |
---|
[609] | 2214 | frame_index_1=j1_1; |
---|
[445] | 2215 | end |
---|
[387] | 2216 | case 'vol' %TODO: update |
---|
| 2217 | if isfield(UvData.XmlData,'Npy') && isfield(UvData.XmlData,'Npx') |
---|
[405] | 2218 | ParamIn_1.Npy=UvData.XmlData.Npy; |
---|
| 2219 | ParamIn_1.Npx=UvData.XmlData.Npx; |
---|
[387] | 2220 | else |
---|
| 2221 | errormsg='Npx and Npy need to be defined in the xml file for volume images .vol'; |
---|
| 2222 | return |
---|
| 2223 | end |
---|
| 2224 | end |
---|
[428] | 2225 | if isequal(get(handles.NomType_1,'Visible'),'on') |
---|
[387] | 2226 | NomType_1=get(handles.NomType_1,'String'); |
---|
[428] | 2227 | else |
---|
| 2228 | NomType_1=get(handles.NomType,'String'); |
---|
| 2229 | end |
---|
[387] | 2230 | test_keepdata_1=0;% test for keeping the previous stored data if the input files are unchanged |
---|
[515] | 2231 | if ~isequal(NomType_1,'*')&& isfield(UvData,'FileName_1') |
---|
[580] | 2232 | test_keepdata_1= strcmp(FileName_1,UvData.FileName_1) ; |
---|
[387] | 2233 | end |
---|
| 2234 | if test_keepdata_1 |
---|
[389] | 2235 | Field{2}=UvData.Field_1;% keep the stored field |
---|
[427] | 2236 | ParamOut_1=UvData.ParamOut_1; |
---|
[387] | 2237 | else |
---|
[496] | 2238 | if isempty(ParamIn_1) || isstruct(ParamIn_1) |
---|
[405] | 2239 | ParamIn_1.FieldName=FieldName_1; |
---|
| 2240 | ParamIn_1.VelType=VelType_1; |
---|
[713] | 2241 | ParamIn_1.Coord_x=get(handles.Coord_x,'String'); |
---|
| 2242 | ParamIn_1.Coord_y=get(handles.Coord_y,'Data'); |
---|
[515] | 2243 | end |
---|
[580] | 2244 | [Field{2},ParamOut_1,errormsg] = read_field(FileName_1,UvData.FileType{2},ParamIn_1,frame_index_1); |
---|
[387] | 2245 | if ~isempty(errormsg) |
---|
[450] | 2246 | errormsg=['error in reading ' FieldName_1 ' in ' FileName_1 ': ' errormsg]; |
---|
[387] | 2247 | return |
---|
| 2248 | end |
---|
[515] | 2249 | if isstruct(ParamOut_1)&&~strcmp(ParamOut_1.FieldName,'get_field...')&& (strcmp(UvData.FileType{2},'civdata')||strcmp(UvData.FileType{2},'civx'))... |
---|
| 2250 | &&~strcmp(ParamOut_1.FieldName,'velocity') && ~strcmp(ParamOut_1.FieldName,'get_field...') |
---|
| 2251 | if ~check_proj_tps |
---|
| 2252 | end |
---|
| 2253 | end |
---|
[387] | 2254 | end |
---|
[507] | 2255 | Field{2}.ZIndex=z_index;%used for multi-plane 3D calibration |
---|
[387] | 2256 | end |
---|
| 2257 | |
---|
| 2258 | %% update uvmat interface |
---|
| 2259 | if isfield(ParamOut,'Npx') |
---|
| 2260 | set(handles.num_Npx,'String',num2str(ParamOut.Npx));% display image size on the interface |
---|
| 2261 | set(handles.num_Npy,'String',num2str(ParamOut.Npy)); |
---|
| 2262 | elseif isfield(ParamOut_1,'Npx') |
---|
| 2263 | set(handles.num_Npx,'String',num2str(ParamOut_1.Npx));% display image size on the interface |
---|
| 2264 | set(handles.num_Npy,'String',num2str(ParamOut_1.Npy)); |
---|
| 2265 | end |
---|
| 2266 | |
---|
| 2267 | %% update the display menu for the first velocity type (first menuline) |
---|
| 2268 | test_veltype=0; |
---|
[404] | 2269 | if (strcmp(UvData.FileType{1},'civx')||strcmp(UvData.FileType{1},'civdata'))&& ~strcmp(FieldName,'get_field...') |
---|
[387] | 2270 | test_veltype=1; |
---|
| 2271 | set(handles.VelType,'Visible','on') |
---|
| 2272 | set(handles.VelType_1,'Visible','on') |
---|
| 2273 | set(handles.FixVelType,'Visible','on') |
---|
[404] | 2274 | menu=set_veltype_display(ParamOut.CivStage,UvData.FileType{1}); |
---|
[387] | 2275 | index_menu=strcmp(ParamOut.VelType,menu);%look for VelType in the menu |
---|
| 2276 | index_val=find(index_menu,1); |
---|
| 2277 | if isempty(index_val) |
---|
| 2278 | index_val=1; |
---|
| 2279 | end |
---|
| 2280 | set(handles.VelType,'Value',index_val) |
---|
| 2281 | if ~get(handles.SubField,'value') |
---|
| 2282 | set(handles.VelType,'String',menu) |
---|
| 2283 | set(handles.VelType_1,'Value',1) |
---|
| 2284 | set(handles.VelType_1,'String',[{''};menu]) |
---|
| 2285 | end |
---|
| 2286 | else |
---|
| 2287 | set(handles.VelType,'Visible','off') |
---|
| 2288 | end |
---|
| 2289 | |
---|
| 2290 | %% update the display menu for the second velocity type (second menuline) |
---|
| 2291 | test_veltype_1=0; |
---|
[450] | 2292 | if isempty(FileName_1) |
---|
[580] | 2293 | % set(handles.FieldName_1,'Value',1); %update the field menu |
---|
| 2294 | % if isstruct(ParamOut) |
---|
| 2295 | % set(handles.FieldName_1,'String',[{''};ParamOut.FieldList]); %update the field menu |
---|
| 2296 | % end |
---|
[405] | 2297 | elseif ~test_keepdata_1 |
---|
[713] | 2298 | if (strcmp(UvData.FileType{2},'civx')||strcmp(UvData.FileType{2},'civdata'))&& ~strcmp(FieldName_1,'get_field...') |
---|
| 2299 | % if (~strcmp(UvData.FileType{2},'netcdf')&&~strcmp(UvData.FileType{2},'civdata')&&~strcmp(UvData.FileType{2},'civx'))|| isequal(FieldName_1,'get_field...') |
---|
[387] | 2300 | test_veltype_1=1; |
---|
| 2301 | set(handles.VelType_1,'Visible','on') |
---|
[515] | 2302 | menu=set_veltype_display(ParamOut_1.CivStage,UvData.FileType{2}); |
---|
[494] | 2303 | index_menu=strcmp(ParamOut_1.VelType,menu); |
---|
| 2304 | set(handles.VelType_1,'Value',1+find(index_menu,1)) |
---|
| 2305 | set(handles.VelType_1,'String',[{''};menu]) |
---|
[713] | 2306 | else |
---|
| 2307 | set(handles.VelType_1,'Visible','off') |
---|
[387] | 2308 | end |
---|
[405] | 2309 | % update the second field menu: the same quantity |
---|
[494] | 2310 | if isstruct(ParamOut_1) |
---|
[580] | 2311 | % display the FieldName menu from the input file and pick the selected one: |
---|
| 2312 | FieldList=get(handles.FieldName_1,'String'); |
---|
| 2313 | field_index=strcmp(ParamOut_1.FieldName,FieldList); |
---|
| 2314 | if ~isempty(field_index) |
---|
| 2315 | set(handles.FieldName_1,'Value',find(field_index,1)) |
---|
| 2316 | end |
---|
[494] | 2317 | end |
---|
[387] | 2318 | end |
---|
| 2319 | if test_veltype||test_veltype_1 |
---|
[580] | 2320 | set(handles.FixVelType,'Visible','on') |
---|
[387] | 2321 | else |
---|
[580] | 2322 | set(handles.FixVelType,'Visible','off') |
---|
[387] | 2323 | end |
---|
| 2324 | |
---|
| 2325 | %% introduce w as background image by default for a new series (only for nbdim=2) |
---|
| 2326 | if ~isfield(UvData,'NewSeries') |
---|
| 2327 | UvData.NewSeries=1; |
---|
| 2328 | end |
---|
| 2329 | %put W as background image by default if NbDim=2: |
---|
| 2330 | if UvData.NewSeries && isequal(get(handles.SubField,'Value'),0) && isfield(Field{1},'W') && ~isempty(Field{1}.W) && ~isequal(Field{1}.NbDim,3); |
---|
| 2331 | set(handles.SubField,'Value',1); |
---|
| 2332 | set(handles.RootPath_1,'String','"') |
---|
| 2333 | set(handles.RootFile_1,'String','"') |
---|
| 2334 | set(handles.SubDir_1,'String','"'); |
---|
| 2335 | indices=fullfile_uvmat('','','','',NomType,num_i1,num_i2,num_j1,num_j2); |
---|
| 2336 | set(handles.FileIndex_1,'String',indices) |
---|
| 2337 | set(handles.FileExt_1,'String','"'); |
---|
[526] | 2338 | set(handles.FieldName_1,'Visible','on'); |
---|
| 2339 | set(handles.FieldName_1,'Visible','on'); |
---|
[387] | 2340 | set(handles.RootPath_1,'Visible','on') |
---|
| 2341 | set(handles.RootFile_1,'Visible','on') |
---|
| 2342 | set(handles.SubDir_1,'Visible','on'); |
---|
| 2343 | set(handles.FileIndex_1,'Visible','on'); |
---|
| 2344 | set(handles.FileExt_1,'Visible','on'); |
---|
[526] | 2345 | set(handles.FieldName_1,'Visible','on'); |
---|
[387] | 2346 | Field{1}.AName='w'; |
---|
| 2347 | end |
---|
| 2348 | |
---|
[674] | 2349 | %% display time value of the current file |
---|
[615] | 2350 | abstime=[];%default inputs |
---|
| 2351 | dt=[]; |
---|
[415] | 2352 | TimeUnit=''; |
---|
[674] | 2353 | if isfield(UvData,'TimeUnit') |
---|
| 2354 | TimeUnit=UvData.TimeUnit;%retrieve info from update_rootinfo |
---|
| 2355 | end |
---|
[615] | 2356 | % time from xml file or video movie |
---|
[674] | 2357 | TimeName=get(handles.TimeName,'String');% indicate that time is from xml |
---|
| 2358 | if strcmp(TimeName,'xml')||strcmp(TimeName,'video') |
---|
[415] | 2359 | if isempty(num_i2)||isnan(num_i2) |
---|
| 2360 | num_i2=num_i1; |
---|
| 2361 | end |
---|
| 2362 | if isempty(num_j1)||isnan(num_j1) |
---|
| 2363 | num_j1=1; |
---|
| 2364 | end |
---|
| 2365 | if isempty(num_j2)||isnan(num_j2) |
---|
| 2366 | num_j2=num_j1; |
---|
| 2367 | end |
---|
| 2368 | siz=size(UvData.XmlData{1}.Time); |
---|
[615] | 2369 | if ~isempty(num_i1)&& ~isempty(num_i2) && num_i1>=0 &&siz(1)>=max(num_i1+1,num_i2+1) && siz(2)>=max(num_j1+1,num_j2+1) |
---|
[611] | 2370 | abstime=(UvData.XmlData{1}.Time(num_i1+1,num_j1+1)+UvData.XmlData{1}.Time(num_i2+1,num_j2+1))/2;%overset the time read from files |
---|
| 2371 | dt=(UvData.XmlData{1}.Time(num_i2+1,num_j2+1)-UvData.XmlData{1}.Time(num_i1+1,num_j1+1)); |
---|
[415] | 2372 | Field{1}.Dt=dt; |
---|
| 2373 | if isfield(UvData.XmlData{1},'TimeUnit') |
---|
| 2374 | TimeUnit=UvData.XmlData{1}.TimeUnit; |
---|
| 2375 | end |
---|
| 2376 | end |
---|
| 2377 | end |
---|
[615] | 2378 | |
---|
[674] | 2379 | % get time in the input file, not defined in a xml file or movie |
---|
[615] | 2380 | if isempty(abstime) |
---|
[675] | 2381 | if strcmp(TimeName,'civdata')||strcmp(TimeName,'civx') |
---|
| 2382 | abstime=Field{1}.Time; |
---|
[693] | 2383 | elseif ~isempty(regexp(TimeName,'^att:'))||~isempty(regexp(TimeName,'^var:')) |
---|
[648] | 2384 | abstime=Field{1}.(TimeName(5:end));%the time is an attribute or variale selected by get_file |
---|
[693] | 2385 | elseif ~isempty(regexp(TimeName,'^dim:')) |
---|
| 2386 | abstime=str2num(get(handles.i1,'String')); |
---|
[615] | 2387 | end |
---|
[648] | 2388 | if isfield(Field{1},'Dt') |
---|
| 2389 | dt=Field{1}.Dt;%dt read from the netcdf input file |
---|
| 2390 | if isfield(Field{1},'TimeUnit') |
---|
| 2391 | TimeUnit=Field{1}.TimeUnit; |
---|
| 2392 | end |
---|
| 2393 | elseif numel(Field)==2 && isfield(Field{2},'Dt')%dt obtained from the second field if not defined in the first |
---|
| 2394 | dt=Field{2}.Dt;%dt read from the netcdf input file |
---|
| 2395 | if isfield(Field{2},'TimeUnit') |
---|
| 2396 | TimeUnit=Field{2}.TimeUnit; |
---|
| 2397 | end |
---|
[615] | 2398 | end |
---|
[667] | 2399 | end |
---|
[654] | 2400 | set(handles.TimeValue,'String',num2str(abstime)) |
---|
[674] | 2401 | |
---|
| 2402 | %% display time value of the second current file if relevant |
---|
[648] | 2403 | abstime_1=[]; |
---|
[674] | 2404 | if ~isempty(FileName_1) |
---|
| 2405 | TimeName_1=get(handles.TimeName_1,'String');% indicate whether time is from xml or video |
---|
| 2406 | % time from xml file or video movie as a second file series |
---|
| 2407 | if strcmp(TimeName_1,'xml')||strcmp(TimeName_1,'video') |
---|
| 2408 | if numel(UvData.XmlData)==2 |
---|
| 2409 | if isempty(i2_1) |
---|
| 2410 | i2_1=num_i1; |
---|
| 2411 | end |
---|
| 2412 | if isempty(j1_1) |
---|
| 2413 | j1_1=1; |
---|
| 2414 | end |
---|
| 2415 | if isempty(j2_1) |
---|
| 2416 | j2_1=j1_1; |
---|
| 2417 | end |
---|
| 2418 | siz=size(UvData.XmlData{2}.Time); |
---|
| 2419 | if ~isempty(i1_1) && siz(1)>=max(i1_1+1,i2_1+1) && siz(2)>=max(j1_1+1,j2_1+1) |
---|
| 2420 | abstime_1=(UvData.XmlData{2}.Time(i1_1+1,j1_1+1)+UvData.XmlData{2}.Time(i2_1+1,j2_1+1))/2;%overset the time read from files |
---|
| 2421 | Field{2}.Dt=(UvData.XmlData{2}.Time(i2_1+1,j2_1+1)-UvData.XmlData{2}.Time(i1_1+1,j1_1+1)); |
---|
| 2422 | end |
---|
| 2423 | end |
---|
| 2424 | end |
---|
| 2425 | |
---|
| 2426 | % get time in the input file of the second series, not defined in a xml file or movie |
---|
[675] | 2427 | if isempty(abstime_1) && numel(Field)==2 |
---|
| 2428 | if strcmp(TimeName_1,'civdata')||strcmp(TimeName_1,'civx') |
---|
| 2429 | abstime_1=Field{2}.Time; |
---|
| 2430 | elseif ~isempty(regexp(TimeName_1,'^att:')) ||~isempty(regexp(TimeName_1,'^dim:'))||~isempty(regexp(TimeName_1,'^var:')) |
---|
[648] | 2431 | abstime_1=Field{2}.(TimeName_1(5:end));%the time is an attribute or variale selected by get_file |
---|
[675] | 2432 | end |
---|
[674] | 2433 | end |
---|
| 2434 | set(handles.TimeValue_1,'String',num2str(abstime_1,5)) |
---|
[648] | 2435 | end |
---|
[674] | 2436 | |
---|
[415] | 2437 | if isempty(dt)||isequal(dt,0) |
---|
| 2438 | set(handles.Dt_txt,'String','') |
---|
| 2439 | else |
---|
| 2440 | if isempty(TimeUnit) |
---|
| 2441 | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' 10^(-3)'] ) |
---|
| 2442 | else |
---|
| 2443 | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' m' TimeUnit] ) |
---|
| 2444 | end |
---|
| 2445 | end |
---|
| 2446 | |
---|
[674] | 2447 | %% Time title with unit |
---|
| 2448 | if isempty(abstime)&&isempty(abstime_1) |
---|
| 2449 | Time_title=''; |
---|
| 2450 | else |
---|
| 2451 | Time_title='Time'; |
---|
| 2452 | if ~isempty(TimeUnit) |
---|
| 2453 | Time_title=['Time (' TimeUnit ')']; |
---|
| 2454 | end |
---|
| 2455 | end |
---|
| 2456 | set(handles.Time_title,'String',Time_title) |
---|
| 2457 | |
---|
[526] | 2458 | %% store the current open names, fieldname and vel types in uvmat interface |
---|
[450] | 2459 | UvData.FileName_1=FileName_1; |
---|
[512] | 2460 | UvData.ParamOut_1=ParamOut_1; |
---|
| 2461 | if numel(Field)==2 |
---|
[713] | 2462 | UvData.Field_1=Field{2}; %store the second field for possible use at next RUN |
---|
[512] | 2463 | end |
---|
[387] | 2464 | |
---|
| 2465 | %% apply coordinate transform or other user fct |
---|
[591] | 2466 | transform=get(handles.TransformPath,'UserData'); |
---|
[515] | 2467 | if isempty(transform) |
---|
| 2468 | UvData.Field=Field{1}; |
---|
| 2469 | else |
---|
[507] | 2470 | XmlData=[];%default |
---|
| 2471 | XmlData_1=[];%default |
---|
| 2472 | if isfield(UvData,'XmlData')%use geometry calib recorded from the ImaDoc xml file as first priority |
---|
| 2473 | XmlData=UvData.XmlData{1}; |
---|
| 2474 | if numel(UvData.XmlData)==2 |
---|
| 2475 | XmlData_1=UvData.XmlData{2}; |
---|
| 2476 | end |
---|
[387] | 2477 | end |
---|
[512] | 2478 | switch nargin(transform) |
---|
| 2479 | case 4 |
---|
| 2480 | if length(Field)==2 |
---|
| 2481 | UvData.Field=transform(Field{1},XmlData,Field{2},XmlData_1); |
---|
| 2482 | else |
---|
| 2483 | UvData.Field=transform(Field{1},XmlData); |
---|
| 2484 | end |
---|
| 2485 | case 3 |
---|
| 2486 | if length(Field)==2 |
---|
| 2487 | UvData.Field=transform(Field{1},XmlData,Field{2}); |
---|
| 2488 | else |
---|
| 2489 | UvData.Field=transform(Field{1},XmlData); |
---|
| 2490 | end |
---|
| 2491 | case 2 |
---|
| 2492 | UvData.Field=transform(Field{1},XmlData); |
---|
| 2493 | case 1 |
---|
| 2494 | UvData.Field=transform(Field{1}); |
---|
[387] | 2495 | end |
---|
[507] | 2496 | end |
---|
[508] | 2497 | |
---|
[515] | 2498 | %% calculate tps coefficients if needed |
---|
[581] | 2499 | UvData.Field=tps_coeff_field(UvData.Field,check_proj_tps); |
---|
[387] | 2500 | |
---|
[667] | 2501 | %% get bounds and dimensions of the input field |
---|
| 2502 | UvData.Field=find_field_bounds(UvData.Field); |
---|
| 2503 | |
---|
[654] | 2504 | if UvData.Field.NbDim>1 |
---|
[491] | 2505 | % default projection plane |
---|
[622] | 2506 | if isempty(UvData.ProjObject{1}) |
---|
| 2507 | UvData.ProjObject{1}.Type='plane';%main plotting plane |
---|
| 2508 | UvData.ProjObject{1}.ProjMode='projection';%main plotting plane |
---|
[627] | 2509 | % UvData.ProjObject{1}.Coord=[0 0 0]; |
---|
[622] | 2510 | UvData.ProjObject{1}.DisplayHandle.uvmat=[]; %plane not visible in uvmat |
---|
| 2511 | UvData.ProjObject{1}.DisplayHandle.view_field=[]; %plane not visible in uvmat |
---|
[491] | 2512 | end |
---|
[435] | 2513 | %% 3D case (menuvolume) |
---|
[654] | 2514 | if UvData.Field.NbDim==3% && UvData.NewSeries |
---|
[435] | 2515 | test_set_object=1; |
---|
| 2516 | hset_object=findobj(allchild(0),'tag','set_object');% look for the set_object GUI |
---|
| 2517 | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
---|
| 2518 | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
---|
| 2519 | if ~isempty(hset_object) %if set_object is detected |
---|
| 2520 | delete(hset_object);% delete the GUI set_object if it does not fit |
---|
[387] | 2521 | end |
---|
[435] | 2522 | if test_set_object% reinitiate the GUI set_object |
---|
[622] | 2523 | delete_object(1);% delete the current projection object in the list UvData.ProjObject, delete its graphic representations and update the list displayed in handles.ListObject and 2 |
---|
| 2524 | UvData.ProjObject{1}.NbDim=NbDim;%test for 3D objects |
---|
| 2525 | UvData.ProjObject{1}.RangeZ=UvData.Field.CoordMesh;%main plotting plane |
---|
| 2526 | UvData.ProjObject{1}.Coord(1,3)=(UvData.Field.ZMin+UvData.Field.ZMax)/2;%section at a middle plane chosen |
---|
| 2527 | UvData.ProjObject{1}.Angle=[0 0 0]; |
---|
| 2528 | UvData.ProjObject{1}.HandlesDisplay=plot(0,0,'Tag','proj_object');% A REVOIR |
---|
| 2529 | UvData.ProjObject{1}.Name='1-PLANE'; |
---|
| 2530 | UvData.ProjObject{1}.enable_plot=1; |
---|
| 2531 | set_object(UvData.ProjObject{1},handles,ZBounds); |
---|
[435] | 2532 | set(handles.ListObject,'Value',1); |
---|
| 2533 | set(handles.ListObject,'String',{'1-PLANE'}); |
---|
[650] | 2534 | set(handles.CheckEditObject,'Value',1)% put the plane in edit mode to enable the z cursor |
---|
| 2535 | CheckEditObject_Callback([],[], handles) |
---|
[387] | 2536 | end |
---|
[435] | 2537 | %multilevel case (single menuplane in a 3D space) |
---|
| 2538 | elseif isfield(UvData,'Z') |
---|
| 2539 | if isfield(UvData,'CoordType')&& isequal(UvData.CoordType,'phys') && isfield(UvData,'XmlData') |
---|
| 2540 | XmlData=UvData.XmlData{1}; |
---|
| 2541 | if isfield(XmlData,'PlanePos') |
---|
[622] | 2542 | UvData.ProjObject{1}.Coord=XmlData.PlanePos(UvData.ZIndex,:); |
---|
[435] | 2543 | end |
---|
| 2544 | if isfield(XmlData,'PlaneAngle') |
---|
| 2545 | siz=size(XmlData.PlaneAngle); |
---|
| 2546 | indangle=min(siz(1),UvData.ZIndex);%take first angle if a single angle is defined (translating scanning) |
---|
[622] | 2547 | UvData.ProjObject{1}.PlaneAngle=XmlData.PlaneAngle(indangle,:); |
---|
[435] | 2548 | end |
---|
| 2549 | elseif isfield(UvData,'ZIndex') |
---|
[622] | 2550 | UvData.ProjObject{1}.ZObject=UvData.ZIndex; |
---|
[435] | 2551 | end |
---|
[387] | 2552 | end |
---|
| 2553 | end |
---|
[435] | 2554 | |
---|
[387] | 2555 | testnewseries=UvData.NewSeries; |
---|
| 2556 | UvData.NewSeries=0;% put to 0 the test for a new field series (set by RootPath_callback) |
---|
| 2557 | set(handles.uvmat,'UserData',UvData) |
---|
| 2558 | |
---|
| 2559 | %% reset the min and max of scalar if only the mask is displayed(TODO: check the need) |
---|
[405] | 2560 | % if isfield(UvData,'Mask')&& ~isfield(UvData,'A') |
---|
| 2561 | % set(handles.num_MinA,'String','0') |
---|
| 2562 | % set(handles.num_MaxA,'String','255') |
---|
| 2563 | % end |
---|
[387] | 2564 | |
---|
[434] | 2565 | %% usual 1D (x,y) plots |
---|
[654] | 2566 | if UvData.Field.NbDim<=1 |
---|
[434] | 2567 | set(handles.Objects,'Visible','off') |
---|
[689] | 2568 | % set(handles.ListObject_1_title,'Visible','off') |
---|
| 2569 | % set(handles.ListObject_1,'Visible','off') |
---|
[511] | 2570 | [PlotType,PlotParamOut]=plot_field(UvData.Field,handles.PlotAxes,read_GUI(handles.uvmat)); |
---|
[598] | 2571 | errormsg=fill_GUI(PlotParamOut,handles.uvmat); |
---|
| 2572 | for list={'Scalar','Vectors'} |
---|
| 2573 | if ~isfield(PlotParamOut,list{1}) |
---|
| 2574 | set(handles.(list{1}),'Visible','off') |
---|
| 2575 | end |
---|
| 2576 | end |
---|
[434] | 2577 | |
---|
[526] | 2578 | %% 2D or 3D fieldname are generally projected |
---|
[387] | 2579 | else |
---|
[434] | 2580 | set(handles.Objects,'Visible','on') |
---|
[689] | 2581 | % set(handles.ListObject_1_title,'Visible','on') |
---|
| 2582 | % set(handles.ListObject_1,'Visible','on') |
---|
[434] | 2583 | |
---|
| 2584 | %% Plot the projections on the selected projection objects |
---|
| 2585 | % main projection object (uvmat display) |
---|
| 2586 | list_object=get(handles.ListObject_1,'String'); |
---|
[535] | 2587 | if isequal(list_object,{''})||isequal(list_object,' ')%refresh list of objects if the menu is empty |
---|
[508] | 2588 | set(handles.ListObject,'Value',1) |
---|
| 2589 | set(handles.ListObject,'String',{'plane'}) |
---|
[622] | 2590 | UvData.ProjObject{1}.Type='plane';%main plotting plane |
---|
| 2591 | UvData.ProjObject{1}.ProjMode='projection';%main plotting plane |
---|
| 2592 | UvData.ProjObject{1}.DisplayHandle.uvmat=[]; %plane not visible in uvmat |
---|
| 2593 | UvData.ProjObject{1}.DisplayHandle.view_field=[]; %plane not visible in uvmat |
---|
[434] | 2594 | set(handles.ListObject_1,'Value',1) |
---|
[508] | 2595 | set(handles.ListObject_1,'String',{'plane'}) |
---|
[387] | 2596 | end |
---|
[674] | 2597 | IndexObj=get(handles.ListObject_1,'Value');%selected projection object for main view |
---|
| 2598 | if IndexObj> numel(UvData.ProjObject) |
---|
| 2599 | IndexObj=1;%select the first object if the selected one does not exist |
---|
[434] | 2600 | set(handles.ListObject_1,'Value',1) |
---|
[387] | 2601 | end |
---|
[674] | 2602 | if get(handles.CheckViewField,'Value') |
---|
| 2603 | IndexObj_2=get(handles.ListObject,'Value');%selected projection object for view_field |
---|
| 2604 | if ~isequal(IndexObj_2,IndexObj(1)) |
---|
| 2605 | IndexObj(2)=IndexObj_2; |
---|
| 2606 | end |
---|
[434] | 2607 | end |
---|
| 2608 | plot_handles{1}=handles; |
---|
| 2609 | if isfield(UvData,'plotaxes')%case of movies |
---|
| 2610 | haxes(1)=UvData.plotaxes; |
---|
| 2611 | else |
---|
[511] | 2612 | haxes(1)=handles.PlotAxes; |
---|
[434] | 2613 | end |
---|
| 2614 | PlotParam{1}=read_GUI(handles.uvmat); |
---|
| 2615 | %default settings if vectors not visible |
---|
| 2616 | if ~isfield(PlotParam{1},'Vectors') |
---|
| 2617 | PlotParam{1}.Vectors.MaxVec=1; |
---|
| 2618 | PlotParam{1}.Vectors.MinVec=0; |
---|
| 2619 | PlotParam{1}.Vectors.CheckFixVecColor=1; |
---|
| 2620 | PlotParam{1}.Vectors.ColCode1=0.33; |
---|
| 2621 | PlotParam{1}.Vectors.ColCode2=0.66; |
---|
[517] | 2622 | PlotParam{1}.Vectors.ColorScalar={''}; |
---|
[434] | 2623 | PlotParam{1}.Vectors.ColorCode= {'rgb'}; |
---|
| 2624 | end |
---|
| 2625 | PosColorbar{1}=UvData.OpenParam.PosColorbar;%prescribe the colorbar position on the uvmat interface |
---|
| 2626 | |
---|
| 2627 | %% second projection object (view_field display) |
---|
| 2628 | if length( IndexObj)>=2 |
---|
| 2629 | view_field_handle=findobj(allchild(0),'tag','view_field');%handles of the view_field GUI |
---|
| 2630 | if ~isempty(view_field_handle) |
---|
| 2631 | plot_handles{2}=guidata(view_field_handle); |
---|
[511] | 2632 | haxes(2)=plot_handles{2}.PlotAxes; |
---|
[599] | 2633 | PlotParam{2}=read_GUI(view_field_handle); |
---|
| 2634 | % PlotParam{2}=read_GUI(handles.uvmat);%read plotting parameters on the uvmat interface |
---|
[434] | 2635 | PosColorbar{2}='*'; %TODO: deal with colorbar position on view_field |
---|
[421] | 2636 | end |
---|
[387] | 2637 | end |
---|
[434] | 2638 | |
---|
| 2639 | %% loop on the projection objects: one or two |
---|
| 2640 | |
---|
| 2641 | for imap=1:numel(IndexObj) |
---|
| 2642 | iobj=IndexObj(imap); |
---|
[622] | 2643 | if numel(UvData.ProjObject)<iobj |
---|
[606] | 2644 | break |
---|
| 2645 | end |
---|
[622] | 2646 | [ObjectData,errormsg]=proj_field(UvData.Field,UvData.ProjObject{iobj});% project field on the object |
---|
[434] | 2647 | if ~isempty(errormsg) |
---|
| 2648 | return |
---|
[387] | 2649 | end |
---|
[434] | 2650 | if testnewseries |
---|
| 2651 | PlotParam{imap}.Scalar.CheckBW=[]; %B/W option depends on the input field (image or scalar) |
---|
| 2652 | if isfield(ObjectData,'CoordUnit') |
---|
| 2653 | PlotParam{imap}.Coordinates.CheckFixAspectRatio=1;% set x and y scaling equal if CoordUnit is defined (common unit for x and y) |
---|
| 2654 | PlotParam{imap}.Coordinates.AspectRatio=1; %set aspect ratio to 1 |
---|
[387] | 2655 | end |
---|
[434] | 2656 | end |
---|
| 2657 | %use of mask (TODO: check) |
---|
| 2658 | if isfield(ObjectData,'NbDim') && isequal(ObjectData.NbDim,2) && isfield(ObjectData,'Mask') && isfield(ObjectData,'A') |
---|
| 2659 | flag_mask=double(ObjectData.Mask>200);%=0 for masked regions |
---|
| 2660 | AX=ObjectData.AX;%x coordiantes for the scalar field |
---|
| 2661 | AY=ObjectData.AY;%y coordinates for the scalar field |
---|
| 2662 | MaskX=ObjectData.MaskX;%x coordiantes for the mask |
---|
| 2663 | MaskY=ObjectData.MaskY;%y coordiantes for the mask |
---|
| 2664 | if ~isequal(MaskX,AX)||~isequal(MaskY,AY) |
---|
| 2665 | nxy=size(flag_mask); |
---|
| 2666 | sizpx=(ObjectData.MaskX(end)-ObjectData.MaskX(1))/(nxy(2)-1);%size of a mask pixel |
---|
| 2667 | sizpy=(ObjectData.MaskY(1)-ObjectData.MaskY(end))/(nxy(1)-1); |
---|
| 2668 | x_mask=ObjectData.MaskX(1):sizpx:ObjectData.MaskX(end); % pixel x coordinates for image display |
---|
| 2669 | y_mask=ObjectData.MaskY(1):-sizpy:ObjectData.MaskY(end);% pixel x coordinates for image display |
---|
| 2670 | %project on the positions of the scalar |
---|
| 2671 | npxy=size(ObjectData.A); |
---|
| 2672 | dxy(1)=(ObjectData.AY(end)-ObjectData.AY(1))/(npxy(1)-1);%grid mesh in y |
---|
| 2673 | dxy(2)=(ObjectData.AX(end)-ObjectData.AX(1))/(npxy(2)-1);%grid mesh in x |
---|
| 2674 | xi=ObjectData.AX(1):dxy(2):ObjectData.AX(end); |
---|
| 2675 | yi=ObjectData.AY(1):dxy(1):ObjectData.AY(end); |
---|
| 2676 | [XI,YI]=meshgrid(xi,yi);% creates the matrix of regular coordinates |
---|
| 2677 | flag_mask = interp2(x_mask,y_mask,flag_mask,XI,YI); |
---|
| 2678 | end |
---|
| 2679 | AClass=class(ObjectData.A); |
---|
| 2680 | ObjectData.A=flag_mask.*double(ObjectData.A); |
---|
| 2681 | ObjectData.A=feval(AClass,ObjectData.A); |
---|
[387] | 2682 | end |
---|
[434] | 2683 | if ~isempty(ObjectData) |
---|
[569] | 2684 | %PlotType='none'; %default |
---|
[434] | 2685 | if imap==2 && isempty(view_field_handle) |
---|
| 2686 | view_field(ObjectData) |
---|
| 2687 | else |
---|
[654] | 2688 | % ObjectData.VarAttribute{5}.Role='scalar';TODO CORRECT |
---|
[434] | 2689 | [PlotType,PlotParamOut]=plot_field(ObjectData,haxes(imap),PlotParam{imap},PosColorbar{imap}); |
---|
[595] | 2690 | if imap==1 |
---|
[598] | 2691 | errormsg=fill_GUI(PlotParamOut,handles.uvmat); |
---|
[595] | 2692 | else |
---|
[596] | 2693 | errormsg=fill_GUI(PlotParamOut,view_field_handle); |
---|
[595] | 2694 | end |
---|
[598] | 2695 | for list={'Scalar','Vectors'} |
---|
| 2696 | if ~isfield(PlotParamOut,list{1}) |
---|
| 2697 | set(plot_handles{imap}.(list{1}),'Visible','off') |
---|
| 2698 | end |
---|
| 2699 | end |
---|
[575] | 2700 | if isfield(Field,'CoordMesh')&&~isempty(Field.CoordMesh) |
---|
| 2701 | ObjectData.CoordMesh=Field.CoordMesh; % gives an estimated mesh size (useful for mouse action on the plot) |
---|
[434] | 2702 | end |
---|
[387] | 2703 | end |
---|
| 2704 | end |
---|
| 2705 | end |
---|
[434] | 2706 | |
---|
| 2707 | %% update the mask |
---|
| 2708 | if isequal(get(handles.CheckMask,'Value'),1)%if the mask option is on |
---|
[641] | 2709 | update_mask(handles); |
---|
[434] | 2710 | end |
---|
| 2711 | |
---|
| 2712 | %% prepare the menus of histograms and plot them (histogram of the whole volume in 3D case) |
---|
| 2713 | menu_histo=(UvData.Field.ListVarName)';%list of field variables to be displayed for the menu of histogram display |
---|
| 2714 | ind_skip=[]; |
---|
| 2715 | % nb_histo=1; |
---|
| 2716 | Ustring=''; |
---|
| 2717 | Vstring=''; |
---|
| 2718 | % suppress coordinates from the histogram menu |
---|
| 2719 | for ivar=1:numel(menu_histo)%l loop on field variables: |
---|
| 2720 | if isfield(UvData.Field,'VarAttribute') && numel(UvData.Field.VarAttribute)>=ivar && isfield(UvData.Field.VarAttribute{ivar},'Role') |
---|
| 2721 | Role=UvData.Field.VarAttribute{ivar}.Role; |
---|
| 2722 | switch Role |
---|
| 2723 | case {'coord_x','coord_y','coord_z','dimvar'} |
---|
| 2724 | ind_skip=[ind_skip ivar]; |
---|
| 2725 | case {'vector_x'} |
---|
| 2726 | Ustring=UvData.Field.ListVarName{ivar}; |
---|
| 2727 | ind_skip=[ind_skip ivar]; |
---|
| 2728 | case {'vector_y'} |
---|
| 2729 | Vstring=UvData.Field.ListVarName{ivar}; |
---|
| 2730 | ind_skip=[ind_skip ivar]; |
---|
| 2731 | end |
---|
[387] | 2732 | end |
---|
[434] | 2733 | DimCell=UvData.Field.VarDimName{ivar}; |
---|
| 2734 | DimName=''; |
---|
| 2735 | if ischar(DimCell) |
---|
| 2736 | DimName=DimCell; |
---|
| 2737 | elseif iscell(DimCell)&& numel(DimCell)==1 |
---|
| 2738 | DimName=DimCell{1}; |
---|
| 2739 | end |
---|
| 2740 | if strcmp(DimName,menu_histo{ivar}) |
---|
| 2741 | ind_skip=[ind_skip ivar]; |
---|
| 2742 | end |
---|
[387] | 2743 | end |
---|
[434] | 2744 | menu_histo(ind_skip)=[];% remove skipped items |
---|
| 2745 | if ~isempty(Ustring) |
---|
| 2746 | menu_histo=[{[Ustring ',' Vstring]};menu_histo];% add U, V at the beginning if they exist |
---|
[387] | 2747 | end |
---|
[434] | 2748 | |
---|
| 2749 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 2750 | % display menus and plot histograms |
---|
| 2751 | test_v=0; |
---|
| 2752 | if ~isempty(menu_histo) |
---|
| 2753 | set(handles.histo1_menu,'Value',1) |
---|
| 2754 | set(handles.histo1_menu,'String',menu_histo) |
---|
| 2755 | histo1_menu_Callback(handles.histo1_menu, [], handles)% plot first histogram |
---|
[387] | 2756 | end |
---|
| 2757 | end |
---|
[644] | 2758 | ResizeFcn(handles.uvmat,[],handles) |
---|
[714] | 2759 | set(handles.uvmat,'Pointer',pointer) |
---|
[387] | 2760 | |
---|
[424] | 2761 | %------------------------------------------------------------------------ |
---|
| 2762 | function histo1_menu_Callback(hObject, eventdata, handles) |
---|
| 2763 | %-------------------------------------------- |
---|
| 2764 | histo_menu=get(handles.histo1_menu,'String'); |
---|
| 2765 | histo_value=get(handles.histo1_menu,'Value'); |
---|
| 2766 | FieldName=histo_menu{histo_value}; |
---|
[530] | 2767 | |
---|
[424] | 2768 | UvData=get(handles.uvmat,'UserData'); |
---|
| 2769 | Field=UvData.Field; |
---|
| 2770 | r=regexp(FieldName,'(?<var1>.*)(?<sep>,)(?<var2>.*)','names'); |
---|
| 2771 | FieldName_2=''; |
---|
| 2772 | if ~isempty(r) |
---|
| 2773 | FieldName=r.var1; |
---|
| 2774 | FieldName_2=r.var2; |
---|
| 2775 | end |
---|
| 2776 | if ~isfield(UvData.Field,FieldName) |
---|
| 2777 | msgbox_uvmat('ERROR',['no field ' FieldName ' for histogram']) |
---|
| 2778 | return |
---|
| 2779 | end |
---|
| 2780 | FieldHisto=Field.(FieldName); |
---|
| 2781 | if isfield(Field,'FF') && ~isempty(Field.FF) && isequal(size(Field.FF),size(FieldHisto)) |
---|
| 2782 | indsel=find(Field.FF==0);%find values marked as false |
---|
| 2783 | if ~isempty(indsel) |
---|
| 2784 | FieldHisto=FieldHisto(indsel); |
---|
| 2785 | if ~isempty(FieldName_2) |
---|
| 2786 | FieldHisto(:,:,2)=Field.(FieldName_2)(indsel); |
---|
| 2787 | end |
---|
[387] | 2788 | end |
---|
[682] | 2789 | elseif ~isempty(FieldName_2) |
---|
| 2790 | FieldHisto(:,:,2)=Field.(FieldName_2); |
---|
[387] | 2791 | end |
---|
[424] | 2792 | if isempty(Field) |
---|
| 2793 | msgbox_uvmat('ERROR',['empty field ' FieldName]) |
---|
| 2794 | else |
---|
| 2795 | nxy=size(FieldHisto); |
---|
| 2796 | Amin=double(min(min(min(FieldHisto))));%min of field value |
---|
| 2797 | Amax=double(max(max(max(FieldHisto))));%max of field value |
---|
| 2798 | if isequal(Amin,Amax) |
---|
[511] | 2799 | cla(handles.HistoAxes) |
---|
[424] | 2800 | else |
---|
| 2801 | Histo.ListVarName={FieldName,'histo'}; |
---|
| 2802 | if isfield(Field,'NbDim') && isequal(Field.NbDim,3) |
---|
| 2803 | Histo.VarDimName={FieldName,FieldName}; %dimensions for the histogram |
---|
| 2804 | else |
---|
| 2805 | if numel(nxy)==2 |
---|
| 2806 | Histo.VarDimName={FieldName,FieldName}; %dimensions for the histogram |
---|
| 2807 | else |
---|
| 2808 | Histo.VarDimName={FieldName,{FieldName,'component'}}; %dimensions for the histogram |
---|
| 2809 | end |
---|
| 2810 | end |
---|
| 2811 | %unit |
---|
| 2812 | units=[]; %default |
---|
| 2813 | for ivar=1:numel(Field.ListVarName) |
---|
| 2814 | if strcmp(Field.ListVarName{ivar},FieldName) |
---|
| 2815 | if isfield(Field,'VarAttribute') && numel(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'units') |
---|
| 2816 | units=Field.VarAttribute{ivar}.units; |
---|
| 2817 | break |
---|
| 2818 | end |
---|
| 2819 | end |
---|
| 2820 | end |
---|
| 2821 | if ~isempty(units) |
---|
| 2822 | Histo.VarAttribute{1}.units=units; |
---|
| 2823 | end |
---|
| 2824 | eval(['Histo.' FieldName '=linspace(Amin,Amax,50);'])%absissa values for histo |
---|
| 2825 | if isfield(Field,'NbDim') && isequal(Field.NbDim,3) |
---|
| 2826 | C=reshape(double(FieldHisto),1,[]);% reshape in a vector |
---|
| 2827 | Histo.histo(:,1)=hist(C, Histo.(FieldName)); %calculate histogram |
---|
| 2828 | else |
---|
| 2829 | for col=1:size(FieldHisto,3) |
---|
| 2830 | B=FieldHisto(:,:,col); |
---|
| 2831 | C=reshape(double(B),1,nxy(1)*nxy(2));% reshape in a vector |
---|
| 2832 | Histo.histo(:,col)=hist(C, Histo.(FieldName)); %calculate histogram |
---|
| 2833 | end |
---|
| 2834 | end |
---|
[511] | 2835 | plot_field(Histo,handles.HistoAxes); |
---|
[426] | 2836 | hlegend=legend; |
---|
| 2837 | if isempty(FieldName_2) |
---|
| 2838 | set(hlegend,'String',FieldName) |
---|
| 2839 | else |
---|
| 2840 | set(hlegend,'String',{FieldName;FieldName_2}) |
---|
| 2841 | end |
---|
[424] | 2842 | end |
---|
[387] | 2843 | end |
---|
| 2844 | |
---|
[622] | 2845 | %------------------------------------------------------------------------ |
---|
[387] | 2846 | % --- translate coordinate to matrix index |
---|
[622] | 2847 | %------------------------------------------------------------------------ |
---|
[387] | 2848 | function [indx,indy]=pos2ind(x0,rangx0,nxy) |
---|
| 2849 | indx=1+round((nxy(2)-1)*(x0-rangx0(1))/(rangx0(2)-rangx0(1)));% index x of pixel |
---|
| 2850 | indy=1+round((nxy(1)-1)*(y12-rangy0(1))/(rangy0(2)-rangy0(1)));% index y of pixel |
---|
| 2851 | |
---|
[622] | 2852 | %------------------------------------------------------------------------ |
---|
[428] | 2853 | % --- Executes on button press in 'CheckZoom'. |
---|
[622] | 2854 | %------------------------------------------------------------------------ |
---|
[428] | 2855 | function CheckZoom_Callback(hObject, eventdata, handles) |
---|
| 2856 | |
---|
[699] | 2857 | if get(handles.CheckZoom,'Value') |
---|
| 2858 | set(handles.CheckFixLimits,'Value',1)% propose by default fixed limits for the plotting axes |
---|
| 2859 | set(handles.CheckZoomFig,'Value',0)%desactivate zoom fig |
---|
| 2860 | end |
---|
[428] | 2861 | |
---|
[699] | 2862 | |
---|
[622] | 2863 | %------------------------------------------------------------------------ |
---|
| 2864 | % --- Executes on button press in CheckZoomFig. |
---|
| 2865 | %------------------------------------------------------------------------ |
---|
| 2866 | function CheckZoomFig_Callback(hObject, eventdata, handles) |
---|
| 2867 | |
---|
| 2868 | if get(handles.CheckZoomFig,'Value') |
---|
| 2869 | set(handles.CheckZoom,'value',0) |
---|
| 2870 | end |
---|
| 2871 | |
---|
| 2872 | %------------------------------------------------------------------------ |
---|
[387] | 2873 | % --- Executes on button press in 'CheckFixLimits'. |
---|
[622] | 2874 | %------------------------------------------------------------------------ |
---|
[387] | 2875 | function CheckFixLimits_Callback(hObject, eventdata, handles) |
---|
[622] | 2876 | |
---|
| 2877 | if ~get(handles.CheckFixLimits,'Value') |
---|
[675] | 2878 | update_plot(handles) |
---|
| 2879 | set(handles.CheckZoom,'Value',0) |
---|
[387] | 2880 | end |
---|
| 2881 | |
---|
[622] | 2882 | %------------------------------------------------------------------------ |
---|
[428] | 2883 | % --- Executes on button press in CheckFixAspectRatio. |
---|
| 2884 | function CheckFixAspectRatio_Callback(hObject, eventdata, handles) |
---|
[622] | 2885 | %------------------------------------------------------------------------ |
---|
| 2886 | |
---|
[690] | 2887 | % if get(handles.CheckFixAspectRatio,'Value') |
---|
[387] | 2888 | update_plot(handles); |
---|
[690] | 2889 | % else |
---|
| 2890 | % update_plot(handles); |
---|
| 2891 | % end |
---|
[387] | 2892 | |
---|
[622] | 2893 | %------------------------------------------------------------------------ |
---|
[428] | 2894 | function num_AspectRatio_Callback(hObject, eventdata, handles) |
---|
[622] | 2895 | %------------------------------------------------------------------------ |
---|
[428] | 2896 | set(handles.CheckFixAspectRatio,'Value',1)% select the fixed aspect ratio button |
---|
| 2897 | update_plot(handles); |
---|
[387] | 2898 | |
---|
[622] | 2899 | %------------------------------------------------------------------------ |
---|
[387] | 2900 | %----Executes on button press in 'record': records the current flags of manual correction. |
---|
[622] | 2901 | %------------------------------------------------------------------------ |
---|
[387] | 2902 | function record_Callback(hObject, eventdata, handles) |
---|
[622] | 2903 | |
---|
[387] | 2904 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
[450] | 2905 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
---|
| 2906 | [erread,message]=fileattrib(FileName); |
---|
[387] | 2907 | if ~isempty(message) && ~isequal(message.UserWrite,1) |
---|
[450] | 2908 | msgbox_uvmat('ERROR',['no writting access to ' FileName]) |
---|
[387] | 2909 | return |
---|
| 2910 | end |
---|
[627] | 2911 | MenuVelType=get(handles.VelType,'String'); |
---|
| 2912 | test_civ2=strcmp(MenuVelType{get(handles.VelType,'Value')},'civ2'); |
---|
| 2913 | test_civ1=strcmp(MenuVelType{get(handles.VelType,'Value')},'civ1'); |
---|
[387] | 2914 | if ~test_civ2 && ~test_civ1 |
---|
| 2915 | msgbox_uvmat('ERROR','manual correction only possible for CIV1 or CIV2 velocity fields') |
---|
| 2916 | end |
---|
| 2917 | if test_civ2 |
---|
[627] | 2918 | nbname='nb_vec_2'; |
---|
| 2919 | flagname='Civ2_FF'; |
---|
| 2920 | CivStage=5; |
---|
[387] | 2921 | end |
---|
| 2922 | if test_civ1 |
---|
[627] | 2923 | nbname='nb_vec_1'; |
---|
| 2924 | flagname='Civ1_FF'; |
---|
| 2925 | CivStage=2; |
---|
[387] | 2926 | end |
---|
| 2927 | %write fix flags in the netcdf file |
---|
| 2928 | UvData=get(handles.uvmat,'UserData'); |
---|
| 2929 | hhh=which('netcdf.open');% look for built-in matlab netcdf library |
---|
[627] | 2930 | if ~isequal(hhh,'')% case of builtin Matlab netcdf library |
---|
[450] | 2931 | nc=netcdf.open(FileName,'NC_WRITE'); |
---|
[387] | 2932 | netcdf.reDef(nc); |
---|
[627] | 2933 | netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'),'CivStage',CivStage); |
---|
[387] | 2934 | dimid = netcdf.inqDimID(nc,nbname); |
---|
| 2935 | try |
---|
| 2936 | varid = netcdf.inqVarID(nc,flagname);% look for already existing fixflag variable |
---|
| 2937 | catch |
---|
| 2938 | varid=netcdf.defVar(nc,flagname,'double',dimid);%create fixflag variable if it does not exist |
---|
| 2939 | end |
---|
| 2940 | netcdf.endDef(nc); |
---|
[511] | 2941 | netcdf.putVar(nc,varid,UvData.PlotAxes.FF); |
---|
[387] | 2942 | netcdf.close(nc); |
---|
| 2943 | else %old netcdf library |
---|
[450] | 2944 | netcdf_toolbox(FileName,AxeData,attrname,nbname,flagname) |
---|
[387] | 2945 | end |
---|
| 2946 | |
---|
| 2947 | %------------------------------------------------------------------- |
---|
| 2948 | %----Correct the netcdf file, using toolbox (old versions of Matlab). |
---|
| 2949 | %------------------------------------------------------------------- |
---|
[450] | 2950 | function netcdf_toolbox(FileName,AxeData,attrname,nbname,flagname) |
---|
| 2951 | nc=netcdf(FileName,'write'); %open netcdf file |
---|
[387] | 2952 | result=redef(nc); |
---|
| 2953 | eval(['nc.' attrname '=1;']); |
---|
| 2954 | theDim=nc(nbname) ;% get the number of velocity vectors |
---|
| 2955 | nb_vectors=size(theDim); |
---|
| 2956 | var_FixFlag=ncvar(flagname,nc);% var_FixFlag will be written as the netcdf variable vec_FixFlag |
---|
| 2957 | var_FixFlag(1:nb_vectors)=AxeData.FF;% |
---|
| 2958 | fin=close(nc); |
---|
| 2959 | |
---|
[674] | 2960 | %----------------------------------------------------------------------- |
---|
[387] | 2961 | % --- Executes on button press in SubField |
---|
[674] | 2962 | %----------------------------------------------------------------------- |
---|
[387] | 2963 | function SubField_Callback(hObject, eventdata, handles) |
---|
[674] | 2964 | |
---|
| 2965 | if get(handles.SubField,'Value')==0% if the subfield button is desactivated |
---|
| 2966 | desable_subfield(handles) |
---|
[591] | 2967 | transform_fct_list=get(handles.TransformName,'String'); |
---|
| 2968 | transform_fct=transform_fct_list(get(handles.TransformName,'Value')); |
---|
[515] | 2969 | if strcmp(transform_fct,'sub_field') |
---|
[591] | 2970 | set(handles.TransformName,'Value',1)%suppress the sub_field transform |
---|
[651] | 2971 | TransformName_Callback(hObject, eventdata, handles); |
---|
[515] | 2972 | else |
---|
[713] | 2973 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[515] | 2974 | end |
---|
[387] | 2975 | else |
---|
[651] | 2976 | fileinput_1=uigetfile_uvmat('select a second input file:',get(handles.RootPath,'String')); |
---|
| 2977 | if isempty(fileinput_1) |
---|
| 2978 | set(handles.SubField,'Value',0) |
---|
[674] | 2979 | else |
---|
[651] | 2980 | % refresh the current displayed field |
---|
| 2981 | display_file_name(handles,fileinput_1,2) |
---|
| 2982 | |
---|
| 2983 | %update list of recent files in the menubar |
---|
| 2984 | MenuFile_1=fileinput_1; |
---|
| 2985 | MenuFile_2=get(handles.MenuFile_1,'Label'); |
---|
| 2986 | MenuFile_3=get(handles.MenuFile_2,'Label'); |
---|
| 2987 | MenuFile_4=get(handles.MenuFile_3,'Label'); |
---|
| 2988 | MenuFile_5=get(handles.MenuFile_4,'Label'); |
---|
| 2989 | set(handles.MenuFile_1,'Label',MenuFile_1) |
---|
| 2990 | set(handles.MenuFile_2,'Label',MenuFile_2) |
---|
| 2991 | set(handles.MenuFile_3,'Label',MenuFile_3) |
---|
| 2992 | set(handles.MenuFile_4,'Label',MenuFile_4) |
---|
| 2993 | set(handles.MenuFile_5,'Label',MenuFile_5) |
---|
| 2994 | end |
---|
[387] | 2995 | end |
---|
| 2996 | |
---|
[674] | 2997 | %----------------------------------------------------------------------- |
---|
| 2998 | % --- desactivate display used for a second file series |
---|
| 2999 | %----------------------------------------------------------------------- |
---|
| 3000 | function desable_subfield(handles) |
---|
| 3001 | |
---|
| 3002 | set(handles.RootPath_1,'String','') |
---|
| 3003 | set(handles.RootFile_1,'String','') |
---|
| 3004 | set(handles.SubDir_1,'String',''); |
---|
| 3005 | set(handles.FileIndex_1,'String',''); |
---|
| 3006 | set(handles.FileExt_1,'String',''); |
---|
| 3007 | set(handles.RootPath_1,'Visible','off') |
---|
| 3008 | set(handles.RootFile_1,'Visible','off') |
---|
| 3009 | set(handles.SubDir_1,'Visible','off'); |
---|
| 3010 | set(handles.NomType_1,'Visible','off'); |
---|
| 3011 | set(handles.FileIndex_1,'Visible','off'); |
---|
| 3012 | set(handles.FileExt_1,'Visible','off'); |
---|
| 3013 | set(handles.TimeName_1,'String',''); |
---|
| 3014 | set(handles.TimeName_1,'Visible','off'); |
---|
| 3015 | set(handles.TimeValue_1,'String',''); |
---|
| 3016 | set(handles.TimeValue_1,'Visible','off'); |
---|
| 3017 | set(handles.FieldName_1,'Value',1);%set to blank state |
---|
| 3018 | set(handles.VelType_1,'Value',1);%set to blank state |
---|
| 3019 | set(handles.num_Opacity,'String','')% desactivate opacity setting |
---|
| 3020 | FieldList=get(handles.FieldName,'String'); |
---|
| 3021 | if numel(FieldList)>1 % if a choice of fields exists |
---|
| 3022 | set(handles.FieldName_1,'Value',1)% set second field choice to blank |
---|
| 3023 | set(handles.FieldName_1,'String',[{''};FieldList])% reproduce the menu FieldName plus a blank option |
---|
| 3024 | else |
---|
| 3025 | set(handles.FieldName_1,'String',{''})% set second field choice to blank |
---|
| 3026 | end |
---|
| 3027 | if ~strcmp(get(handles.VelType,'Visible'),'on') |
---|
| 3028 | set(handles.VelType_1,'Visible','off') |
---|
| 3029 | end |
---|
| 3030 | UvData=get(handles.uvmat,'UserData'); |
---|
| 3031 | if isfield(UvData,'XmlData_1') |
---|
| 3032 | UvData=rmfield(UvData,'XmlData_1'); |
---|
| 3033 | end |
---|
| 3034 | set(handles.uvmat,'UserData',UvData); |
---|
| 3035 | |
---|
[387] | 3036 | %------------------------------------------------------------------------ |
---|
| 3037 | % --- read the data displayed for the input rootfile windows (new): TODO use read_GUI |
---|
[674] | 3038 | %------------------------------------------------------------------------ |
---|
| 3039 | function [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles) |
---|
[387] | 3040 | |
---|
| 3041 | InputFile=read_GUI(handles.InputFile); |
---|
| 3042 | RootPath=InputFile.RootPath; |
---|
| 3043 | SubDir=regexprep(InputFile.SubDir,'/|\',''); |
---|
| 3044 | RootFile=regexprep(InputFile.RootFile,'/|\',''); |
---|
| 3045 | FileIndices=InputFile.FileIndex; |
---|
| 3046 | FileExt=InputFile.FileExt; |
---|
| 3047 | |
---|
| 3048 | |
---|
| 3049 | %------------------------------------------------------------------------ |
---|
| 3050 | % ---- read the data displayed for the second input rootfile windows |
---|
[674] | 3051 | %------------------------------------------------------------------------ |
---|
[387] | 3052 | function [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1,NomType_1]=read_file_boxes_1(handles) |
---|
[674] | 3053 | |
---|
[387] | 3054 | RootPath_1=get(handles.RootPath_1,'String'); % read the data from the file1_input window |
---|
| 3055 | if isequal(get(handles.RootPath_1,'Visible'),'off') || isequal(RootPath_1,'"') |
---|
| 3056 | RootPath_1=get(handles.RootPath,'String'); |
---|
| 3057 | end; |
---|
| 3058 | SubDir_1=get(handles.SubDir_1,'String'); |
---|
| 3059 | if isequal(get(handles.SubDir_1,'Visible'),'off')|| isequal(SubDir_1,'"') |
---|
| 3060 | SubDir_1=get(handles.SubDir,'String'); |
---|
| 3061 | end |
---|
| 3062 | SubDir_1=regexprep(SubDir_1,'\<[\\/]|[\\/]\>','');%suppress possible / or \ separator at the beginning or the end of the string |
---|
| 3063 | RootFile_1=get(handles.RootFile_1,'String'); |
---|
| 3064 | if isequal(get(handles.RootFile_1,'Visible'),'off') || isequal(RootFile_1,'"') |
---|
| 3065 | RootFile_1=get(handles.RootFile,'String'); |
---|
| 3066 | end |
---|
| 3067 | RootFile_1=regexprep(RootFile_1,'\<[\\/]|[\\/]\>','');%suppress possible / or \ separator at the beginning or the end of the string |
---|
| 3068 | FileIndex_1=get(handles.FileIndex_1,'String'); |
---|
| 3069 | if isequal(get(handles.FileIndex_1,'Visible'),'off')|| isequal(FileIndex_1,'"') |
---|
| 3070 | FileIndex_1=get(handles.FileIndex,'String'); |
---|
| 3071 | end |
---|
| 3072 | FileExt_1=get(handles.FileExt_1,'String'); |
---|
| 3073 | if isequal(get(handles.FileExt_1,'Visible'),'off') || isequal(FileExt_1,'"') |
---|
| 3074 | FileExt_1=get(handles.FileExt,'String');%read FileExt by default |
---|
| 3075 | end |
---|
| 3076 | NomType_1=get(handles.NomType_1,'String'); |
---|
| 3077 | if isequal(get(handles.NomType_1,'Visible'),'off') || isequal(NomType_1,'"') |
---|
| 3078 | NomType_1=get(handles.NomType,'String');%read FileExt by default |
---|
| 3079 | end |
---|
| 3080 | %------------------------------------------------------------------------ |
---|
[526] | 3081 | % --- Executes on menu selection FieldName |
---|
| 3082 | function FieldName_Callback(hObject, eventdata, handles) |
---|
[387] | 3083 | %------------------------------------------------------------------------ |
---|
[648] | 3084 | |
---|
| 3085 | %% read data from uvmat |
---|
[581] | 3086 | UvData=get(handles.uvmat,'UserData'); |
---|
[526] | 3087 | list_fields=get(handles.FieldName,'String');% list menu fields |
---|
| 3088 | index_fields=get(handles.FieldName,'Value');% selected string index |
---|
[387] | 3089 | field= list_fields{index_fields(1)}; % selected string |
---|
| 3090 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
| 3091 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
---|
| 3092 | [tild,tild,tild,i1,i2,j1,j2,tild,NomType]=fileparts_uvmat(['xxx' get(handles.FileIndex,'String') FileExt]); |
---|
[648] | 3093 | |
---|
[674] | 3094 | switch field |
---|
[648] | 3095 | |
---|
| 3096 | case 'get_field...' |
---|
[674] | 3097 | %% fill the coordinates and variables from selections in get_field |
---|
[648] | 3098 | ParamIn=[]; |
---|
| 3099 | % in case of civ data, we use the civ choice as default input for the GUI get_field |
---|
| 3100 | if strcmp(get(handles.VelType,'Visible'),'on') |
---|
| 3101 | ParamIn.SwitchVarIndexTime='attribute'; |
---|
| 3102 | ListVelType=get(handles.VelType,'String'); |
---|
| 3103 | VelType=ListVelType{get(handles.VelType,'Value')}; |
---|
| 3104 | switch VelType |
---|
| 3105 | case 'civ1' |
---|
[674] | 3106 | ParamIn.TimeAttrName='Civ1_Time'; |
---|
[648] | 3107 | ParamIn.vector_x='Civ1_U'; |
---|
| 3108 | ParamIn.vector_y='Civ1_V'; |
---|
| 3109 | ParamIn.vec_color='Civ1_C'; |
---|
| 3110 | case 'filter1' |
---|
[674] | 3111 | ParamIn.TimeAttrName='Civ1_Time'; |
---|
[648] | 3112 | ParamIn.vector_x='Civ1_U_smooth'; |
---|
| 3113 | ParamIn.vector_y='Civ1_V_smooth'; |
---|
| 3114 | case 'civ2' |
---|
[674] | 3115 | ParamIn.TimeAttrName='Civ2_Time'; |
---|
[648] | 3116 | ParamIn.vector_x='Civ2_U'; |
---|
| 3117 | ParamIn.vector_y='Civ2_V'; |
---|
| 3118 | case 'filter2' |
---|
[674] | 3119 | ParamIn.TimeAttrName='Civ2_Time'; |
---|
[648] | 3120 | ParamIn.vector_x='Civ2_U_smooth'; |
---|
| 3121 | ParamIn.vector_y='Civ2_V_smooth'; |
---|
| 3122 | ParamIn.vec_color='Civ2_C'; |
---|
| 3123 | end |
---|
| 3124 | end |
---|
| 3125 | |
---|
| 3126 | % VelType menu desactivated |
---|
| 3127 | set(handles.FixVelType,'visible','off') |
---|
| 3128 | set(handles.VelType,'Visible','off') |
---|
| 3129 | |
---|
| 3130 | %read selection from get_field |
---|
| 3131 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
---|
| 3132 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
---|
| 3133 | GetFieldData=get_field(FileName,ParamIn);% inport field names from the GUI get_field |
---|
| 3134 | FieldList={}; |
---|
| 3135 | VecColorList={}; |
---|
| 3136 | switch GetFieldData.FieldOption |
---|
| 3137 | case 'vectors' |
---|
| 3138 | UName=GetFieldData.PanelVectors.vector_x; |
---|
| 3139 | VName=GetFieldData.PanelVectors.vector_y; |
---|
| 3140 | YName={GetFieldData.Coordinates.Coord_y}; |
---|
| 3141 | CName=GetFieldData.PanelVectors.vec_color; |
---|
[675] | 3142 | FieldList={['vec(' UName ',' VName ')'];... |
---|
| 3143 | ['norm(' UName ',' VName ')'];... |
---|
| 3144 | UName;VName}; |
---|
| 3145 | VecColorList={['norm(' UName ',' VName ')'];... |
---|
| 3146 | UName;VName}; |
---|
| 3147 | if ~isempty(CName) |
---|
| 3148 | VecColorList=[{CName};VecColorList]; |
---|
| 3149 | end |
---|
[648] | 3150 | case 'scalar' |
---|
| 3151 | AName=GetFieldData.PanelScalar.scalar; |
---|
| 3152 | YName={GetFieldData.Coordinates.Coord_y}; |
---|
| 3153 | FieldList={AName}; |
---|
| 3154 | case '1D plot' |
---|
| 3155 | YName=GetFieldData.PanelOrdinate.ordinate; |
---|
[674] | 3156 | case 'civdata...'%reinitiate input, return to automatic civ data reading |
---|
| 3157 | display_file_name(handles,FileName,1) |
---|
[648] | 3158 | end |
---|
[654] | 3159 | if ~strcmp(GetFieldData.FieldOption,'civdata...') |
---|
| 3160 | XName=GetFieldData.Coordinates.Coord_x; |
---|
[674] | 3161 | TimeNameStr=GetFieldData.Time.SwitchVarIndexTime; |
---|
[693] | 3162 | switch TimeNameStr |
---|
| 3163 | case 'file index' |
---|
| 3164 | set(handles.TimeName,'String',''); |
---|
| 3165 | case 'attribute' |
---|
| 3166 | set(handles.TimeName,'String',['att:' GetFieldData.Time.TimeName]); |
---|
| 3167 | case 'variable' |
---|
| 3168 | set(handles.TimeName,'String',['var:' GetFieldData.Time.TimeName]) |
---|
| 3169 | set(handles.NomType,'String','*') |
---|
| 3170 | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
---|
| 3171 | set(handles.FileIndex,'String','') |
---|
| 3172 | ParamIn.TimeVarName=GetFieldData.Time.TimeName; |
---|
| 3173 | case 'matrix_index' |
---|
| 3174 | set(handles.TimeName,'String',['dim:' GetFieldData.Time.TimeName]); |
---|
| 3175 | set(handles.NomType,'String','*') |
---|
| 3176 | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
---|
| 3177 | set(handles.FileIndex,'String','') |
---|
| 3178 | ParamIn.TimeDimName=GetFieldData.Time.TimeName; |
---|
[674] | 3179 | end |
---|
| 3180 | set(handles.Coord_x,'String',XName) |
---|
| 3181 | if ischar(YName) |
---|
| 3182 | YName={YName}; |
---|
| 3183 | end |
---|
| 3184 | set(handles.Coord_y,'Data',YName) |
---|
| 3185 | set(handles.FieldName,'Value',1) |
---|
| 3186 | set(handles.FieldName,'String',[FieldList; {'get_field...'}]); |
---|
| 3187 | set(handles.ColorScalar,'Value',1) |
---|
| 3188 | set(handles.ColorScalar,'String',VecColorList); |
---|
| 3189 | UvData.FileType{1}='netcdf'; |
---|
| 3190 | set(handles.uvmat,'UserData',UvData) |
---|
[713] | 3191 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[648] | 3192 | end |
---|
[674] | 3193 | |
---|
[648] | 3194 | case 'image' |
---|
[674] | 3195 | %% look for image corresponding to civ data |
---|
[648] | 3196 | if isfield(UvData.Field,'Civ2_ImageA')%get the corresponding input image in the netcdf file |
---|
| 3197 | imagename=UvData.Field.Civ2_ImageA; |
---|
| 3198 | elseif isfield(UvData.Field,'Civ1_ImageA')% |
---|
| 3199 | imagename=UvData.Field.Civ1_ImageA; |
---|
| 3200 | else |
---|
| 3201 | SubDirBase=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
---|
| 3202 | imagename=fullfile_uvmat(RootPath,SubDirBase,RootFile,'.png',NomType,i1,[],j1,[]); |
---|
| 3203 | end |
---|
| 3204 | if ~exist(imagename,'file') |
---|
| 3205 | imagename=uigetfile_uvmat('Pick an image file',imagename,'image'); |
---|
| 3206 | if isempty(imagename) |
---|
| 3207 | return |
---|
| 3208 | end |
---|
| 3209 | end |
---|
[387] | 3210 | % display the selected field and related information |
---|
[648] | 3211 | display_file_name(handles,imagename)%display the image |
---|
[674] | 3212 | otherwise |
---|
[713] | 3213 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[387] | 3214 | end |
---|
| 3215 | |
---|
[622] | 3216 | %---------------------------------------------------------------- |
---|
[526] | 3217 | % --- Executes on menu selection FieldName |
---|
| 3218 | function FieldName_1_Callback(hObject, eventdata, handles) |
---|
[387] | 3219 | %------------------------------------------------- |
---|
[648] | 3220 | |
---|
| 3221 | %%%%%% TODO: modify like FieldName_Callback |
---|
[387] | 3222 | %% read input data |
---|
| 3223 | check_new=~get(handles.SubField,'Value'); %check_new=1 if a second field was not previously entered |
---|
| 3224 | UvData=get(handles.uvmat,'UserData'); |
---|
| 3225 | if check_new && isfield(UvData,'XmlData') |
---|
| 3226 | UvData.XmlData{2}=UvData.XmlData{1}; |
---|
| 3227 | end |
---|
[389] | 3228 | if isfield(UvData,'Field_1') |
---|
| 3229 | UvData=rmfield(UvData,'Field_1');% remove the stored second field (a new one needs to be read) |
---|
| 3230 | end |
---|
[450] | 3231 | UvData.FileName_1='';% desactivate the use of a constant second file |
---|
[526] | 3232 | list_fields=get(handles.FieldName,'String');% list menu fields |
---|
| 3233 | field= list_fields{get(handles.FieldName,'Value')}; % selected string |
---|
| 3234 | list_fields=get(handles.FieldName_1,'String');% list menu fields |
---|
| 3235 | field_1= list_fields{get(handles.FieldName_1,'Value')}; % selected string for the second field |
---|
[405] | 3236 | if isempty(field_1)%||(numel(UvData.FileType)>=2 && strcmp(UvData.FileType{2},'image')) |
---|
[387] | 3237 | set(handles.SubField,'Value',0) |
---|
| 3238 | SubField_Callback(hObject, eventdata, handles) |
---|
[428] | 3239 | return |
---|
[405] | 3240 | else |
---|
| 3241 | set(handles.SubField,'Value',1)%state that a second field is now entered |
---|
[387] | 3242 | end |
---|
| 3243 | |
---|
| 3244 | %% read the rootfile input display |
---|
[405] | 3245 | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
---|
[450] | 3246 | FileName_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1]; |
---|
[387] | 3247 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(get(handles.FileIndex,'String')); |
---|
| 3248 | switch field_1 |
---|
| 3249 | case 'get_field...' |
---|
[713] | 3250 | %% fill the coordinates and variables from selections in get_field |
---|
| 3251 | ParamIn=[]; |
---|
| 3252 | % in case of civ data, we use the civ choice as default input for the GUI get_field |
---|
| 3253 | if strcmp(get(handles.VelType_1,'Visible'),'on') |
---|
| 3254 | ParamIn.SwitchVarIndexTime='attribute'; |
---|
| 3255 | ListVelType=get(handles.VelType_1,'String'); |
---|
| 3256 | VelType=ListVelType{get(handles.VelType_1,'Value')}; |
---|
| 3257 | switch VelType |
---|
| 3258 | case 'civ1' |
---|
| 3259 | ParamIn.TimeAttrName='Civ1_Time'; |
---|
| 3260 | ParamIn.vector_x='Civ1_U'; |
---|
| 3261 | ParamIn.vector_y='Civ1_V'; |
---|
| 3262 | ParamIn.vec_color='Civ1_C'; |
---|
| 3263 | case 'filter1' |
---|
| 3264 | ParamIn.TimeAttrName='Civ1_Time'; |
---|
| 3265 | ParamIn.vector_x='Civ1_U_smooth'; |
---|
| 3266 | ParamIn.vector_y='Civ1_V_smooth'; |
---|
| 3267 | case 'civ2' |
---|
| 3268 | ParamIn.TimeAttrName='Civ2_Time'; |
---|
| 3269 | ParamIn.vector_x='Civ2_U'; |
---|
| 3270 | ParamIn.vector_y='Civ2_V'; |
---|
| 3271 | case 'filter2' |
---|
| 3272 | ParamIn.TimeAttrName='Civ2_Time'; |
---|
| 3273 | ParamIn.vector_x='Civ2_U_smooth'; |
---|
| 3274 | ParamIn.vector_y='Civ2_V_smooth'; |
---|
| 3275 | ParamIn.vec_color='Civ2_C'; |
---|
| 3276 | end |
---|
[387] | 3277 | end |
---|
[713] | 3278 | |
---|
| 3279 | % VelType menu desactivated |
---|
| 3280 | set(handles.FixVelType,'visible','off') |
---|
| 3281 | set(handles.VelType,'Visible','off') |
---|
| 3282 | |
---|
| 3283 | %read selection from get_field |
---|
| 3284 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
---|
| 3285 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
---|
| 3286 | GetFieldData=get_field(FileName,ParamIn);% inport field names from the GUI get_field |
---|
| 3287 | FieldList={}; |
---|
| 3288 | VecColorList={}; |
---|
| 3289 | switch GetFieldData.FieldOption |
---|
| 3290 | case 'vectors' |
---|
| 3291 | UName=GetFieldData.PanelVectors.vector_x; |
---|
| 3292 | VName=GetFieldData.PanelVectors.vector_y; |
---|
| 3293 | YName={GetFieldData.Coordinates.Coord_y}; |
---|
| 3294 | CName=GetFieldData.PanelVectors.vec_color; |
---|
| 3295 | FieldList={['vec(' UName ',' VName ')'];... |
---|
| 3296 | ['norm(' UName ',' VName ')'];... |
---|
| 3297 | UName;VName}; |
---|
| 3298 | VecColorList={['norm(' UName ',' VName ')'];... |
---|
| 3299 | UName;VName}; |
---|
| 3300 | if ~isempty(CName) |
---|
| 3301 | VecColorList=[{CName};VecColorList]; |
---|
| 3302 | end |
---|
| 3303 | case 'scalar' |
---|
| 3304 | AName=GetFieldData.PanelScalar.scalar; |
---|
| 3305 | YName={GetFieldData.Coordinates.Coord_y}; |
---|
| 3306 | FieldList={AName}; |
---|
| 3307 | case '1D plot' |
---|
| 3308 | YName=GetFieldData.PanelOrdinate.ordinate; |
---|
| 3309 | case 'civdata...'%reinitiate input, return to automatic civ data reading |
---|
| 3310 | display_file_name(handles,FileName,1) |
---|
[428] | 3311 | end |
---|
[713] | 3312 | if ~strcmp(GetFieldData.FieldOption,'civdata...') |
---|
| 3313 | XName=GetFieldData.Coordinates.Coord_x; |
---|
| 3314 | TimeNameStr=GetFieldData.Time.SwitchVarIndexTime; |
---|
| 3315 | switch TimeNameStr |
---|
| 3316 | case 'file index' |
---|
| 3317 | set(handles.TimeName_1,'String',''); |
---|
| 3318 | case 'attribute' |
---|
| 3319 | set(handles.TimeName_1,'String',['att:' GetFieldData.Time.TimeName]); |
---|
| 3320 | case 'variable' |
---|
| 3321 | set(handles.TimeName_1,'String',['var:' GetFieldData.Time.TimeName]) |
---|
| 3322 | set(handles.NomType_1,'String','*') |
---|
| 3323 | set(handles.RootFile_1,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
---|
| 3324 | set(handles.FileIndex_1,'String','') |
---|
| 3325 | ParamIn.TimeVarName=GetFieldData.Time.TimeName; |
---|
| 3326 | case 'matrix_index' |
---|
| 3327 | set(handles.TimeName_1,'String',['dim:' GetFieldData.Time.TimeName]); |
---|
| 3328 | set(handles.NomType_1,'String','*') |
---|
| 3329 | set(handles.RootFile_1,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
---|
| 3330 | set(handles.FileIndex_1,'String','') |
---|
| 3331 | ParamIn.TimeDimName_1=GetFieldData.Time.TimeName; |
---|
| 3332 | end |
---|
| 3333 | set(handles.Coord_x,'String',XName) |
---|
| 3334 | if ischar(YName) |
---|
| 3335 | YName={YName}; |
---|
| 3336 | end |
---|
| 3337 | set(handles.Coord_y,'Data',YName) |
---|
| 3338 | set(handles.FieldName_1,'Value',1) |
---|
| 3339 | set(handles.FieldName_1,'String',[FieldList; {'get_field...'}]); |
---|
| 3340 | set(handles.ColorScalar,'Value',1) |
---|
| 3341 | set(handles.ColorScalar,'String',VecColorList); |
---|
| 3342 | UvData.FileType{2}='netcdf'; |
---|
| 3343 | set(handles.uvmat,'UserData',UvData) |
---|
| 3344 | REFRESH_Callback(hObject, eventdata, handles) |
---|
| 3345 | end |
---|
| 3346 | |
---|
| 3347 | % set_veltype_display(0) % no veltype display |
---|
| 3348 | % hget_field=findobj(allchild(0),'name','get_field_1'); |
---|
| 3349 | % if ~isempty(hget_field) |
---|
| 3350 | % delete(hget_field) |
---|
| 3351 | % end |
---|
| 3352 | % hget_field=get_field(FileName_1); |
---|
| 3353 | % set(hget_field,'name','get_field_1') |
---|
| 3354 | % hhget_field=guidata(hget_field); |
---|
| 3355 | % set(hhget_field.list_fig,'Value',1) |
---|
| 3356 | % set(hhget_field.list_fig,'String',{'uvmat'}) |
---|
| 3357 | % if check_new |
---|
| 3358 | % UvData.FileType{2}=UvData.FileType{1}; |
---|
| 3359 | % set(handles.FileIndex_1,'String',get(handles.FileIndex,'String')) |
---|
| 3360 | % set(handles.uvmat,'UserData',UvData) |
---|
| 3361 | % end |
---|
[387] | 3362 | case 'image' |
---|
[674] | 3363 | %% look for image corresponding to civ data |
---|
| 3364 | imagename=''; |
---|
[494] | 3365 | if isfield(UvData.Field,'Civ2_ImageA')%get the corresponding input image in the netcdf file |
---|
| 3366 | imagename=UvData.Field.Civ2_ImageA; |
---|
| 3367 | elseif isfield(UvData.Field,'Civ1_ImageA')% |
---|
| 3368 | imagename=UvData.Field.Civ1_ImageA; |
---|
| 3369 | else |
---|
[674] | 3370 | SubDirBase=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
---|
| 3371 | imagename=fullfile_uvmat(RootPath,SubDirBase,RootFile,'.png',NomType,i1,[],j1,[]); |
---|
[494] | 3372 | end |
---|
[674] | 3373 | if ~exist(imagename,'file') |
---|
| 3374 | imagename=uigetfile_uvmat('Pick an image file',imagename,'image'); |
---|
| 3375 | |
---|
[387] | 3376 | end |
---|
[674] | 3377 | if isempty(imagename) |
---|
[405] | 3378 | set(handles.SubField,'Value',0) |
---|
[674] | 3379 | return |
---|
| 3380 | else |
---|
| 3381 | display_file_name(handles,imagename,2)%display the image as second field |
---|
[405] | 3382 | end |
---|
[387] | 3383 | otherwise |
---|
[580] | 3384 | check_refresh=1; |
---|
| 3385 | if check_new% if a second field was not previously entered, we just read another field in the first input file |
---|
[387] | 3386 | set(handles.FileIndex_1,'String',get(handles.FileIndex,'String')) |
---|
| 3387 | set(handles.FileExt_1,'String',get(handles.FileExt,'String')) |
---|
[580] | 3388 | |
---|
| 3389 | UvData.FileType{2}=UvData.FileType{1}; |
---|
| 3390 | UvData.XmlData{2}= UvData.XmlData{1}; |
---|
[591] | 3391 | transform=get(handles.TransformPath,'UserData'); |
---|
[580] | 3392 | if (~isa(transform,'function_handle')||nargin(transform)<3) |
---|
| 3393 | set(handles.uvmat,'UserData',UvData) |
---|
[591] | 3394 | set(handles.TransformName,'value',2); % set transform fct to 'sub_field' if the current fct does not accept two input fields |
---|
[674] | 3395 | TransformName_Callback(hObject, eventdata, handles)% activate transform_fct_Callback and refresh current plot |
---|
[580] | 3396 | check_refresh=0; |
---|
| 3397 | end |
---|
[387] | 3398 | end |
---|
| 3399 | if ~isequal(field,'image') |
---|
[546] | 3400 | set(handles.TitleNpxy,'Visible','off')% visible npx,pxcm... buttons |
---|
[387] | 3401 | set(handles.num_Npx,'Visible','off') |
---|
| 3402 | set(handles.num_Npy,'Visible','off') |
---|
| 3403 | end |
---|
| 3404 | set(handles.uvmat,'UserData',UvData) |
---|
[580] | 3405 | |
---|
| 3406 | if check_refresh && ~(isfield(UvData,'NewSeries')&&isequal(UvData.NewSeries,1)) |
---|
[713] | 3407 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[387] | 3408 | end |
---|
| 3409 | end |
---|
| 3410 | |
---|
| 3411 | %------------------------------------------------------------------------ |
---|
| 3412 | % --- set the visibility of relevant velocity type menus: |
---|
| 3413 | function menu=set_veltype_display(Civ,FileType) |
---|
| 3414 | %------------------------------------------------------------------------ |
---|
| 3415 | if ~exist('FileType','var') |
---|
| 3416 | FileType='civx'; |
---|
| 3417 | end |
---|
| 3418 | switch FileType |
---|
| 3419 | case 'civx' |
---|
[389] | 3420 | menu={'civ1';'interp1';'filter1';'civ2';'interp2';'filter2'}; |
---|
| 3421 | if isequal(Civ,0) |
---|
| 3422 | imax=0; |
---|
| 3423 | elseif isequal(Civ,1) || isequal(Civ,2) |
---|
| 3424 | imax=1; |
---|
| 3425 | elseif isequal(Civ,3) |
---|
| 3426 | imax=3; |
---|
| 3427 | elseif isequal(Civ,4) || isequal(Civ,5) |
---|
| 3428 | imax=4; |
---|
| 3429 | elseif isequal(Civ,6) %patch2 |
---|
| 3430 | imax=6; |
---|
| 3431 | end |
---|
[387] | 3432 | case 'civdata' |
---|
[389] | 3433 | menu={'civ1';'filter1';'civ2';'filter2'}; |
---|
| 3434 | if isequal(Civ,0) |
---|
| 3435 | imax=0; |
---|
| 3436 | elseif isequal(Civ,1) || isequal(Civ,2) |
---|
| 3437 | imax=1; |
---|
| 3438 | elseif isequal(Civ,3) |
---|
| 3439 | imax=2; |
---|
| 3440 | elseif isequal(Civ,4) || isequal(Civ,5) |
---|
| 3441 | imax=3; |
---|
| 3442 | elseif isequal(Civ,6) %patch2 |
---|
| 3443 | imax=4; |
---|
| 3444 | end |
---|
[387] | 3445 | end |
---|
| 3446 | menu=menu(1:imax); |
---|
| 3447 | |
---|
| 3448 | %------------------------------------------------------------------------ |
---|
[402] | 3449 | % --- Executes on button press in FixVelType. |
---|
| 3450 | function FixVelType_Callback(hObject, eventdata, handles) |
---|
| 3451 | %------------------------------------------------------------------------ |
---|
[713] | 3452 | % inputfilerefresh the current plot if the fixed veltype is unselected |
---|
[405] | 3453 | if ~get(handles.FixVelType,'Value') |
---|
[713] | 3454 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[402] | 3455 | end |
---|
| 3456 | |
---|
| 3457 | %------------------------------------------------------------------------ |
---|
[387] | 3458 | % --- Executes on button press in VelType. |
---|
| 3459 | function VelType_Callback(hObject, eventdata, handles) |
---|
| 3460 | %------------------------------------------------------------------------ |
---|
| 3461 | set(handles.FixVelType,'Value',1) |
---|
[713] | 3462 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[387] | 3463 | |
---|
| 3464 | %------------------------------------------------------------------------ |
---|
[515] | 3465 | % --- Executes on choice selection in VelType_1. |
---|
[387] | 3466 | function VelType_1_Callback(hObject, eventdata, handles) |
---|
| 3467 | %------------------------------------------------------------------------ |
---|
| 3468 | set(handles.FixVelType,'Value',1)% the velocity type is now imposed by the GUI (not automatic) |
---|
[389] | 3469 | UvData=get(handles.uvmat,'UserData'); |
---|
[713] | 3470 | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])%paint REFRESH button in yellow to indicate its activation |
---|
[387] | 3471 | drawnow |
---|
[515] | 3472 | InputFile=read_GUI(handles.InputFile);% read the input file parameters |
---|
| 3473 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
| 3474 | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
---|
| 3475 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt];% name of the first input file |
---|
[405] | 3476 | |
---|
[515] | 3477 | check_refresh=0; |
---|
[389] | 3478 | if isempty(InputFile.VelType_1) |
---|
[515] | 3479 | FileName_1='';% we plot the first input field without the second field |
---|
[387] | 3480 | set(handles.SubField,'Value',0) |
---|
[580] | 3481 | SubField_Callback(hObject, eventdata, handles)% activate SubField_Callback and refresh current plot, removing the second field |
---|
[387] | 3482 | elseif get(handles.SubField,'Value')% if subfield is already 'on' |
---|
[515] | 3483 | FileName_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1];% name of the second input file |
---|
[580] | 3484 | check_refresh=1;%will refresh the current plot |
---|
[515] | 3485 | else% we introduce the same file (with a different field) for the second series |
---|
| 3486 | FileName_1=FileName;% we compare two fields in the same file |
---|
[389] | 3487 | UvData.FileType{2}=UvData.FileType{1}; |
---|
[515] | 3488 | UvData.XmlData{2}= UvData.XmlData{1}; |
---|
[387] | 3489 | set(handles.SubField,'Value',1) |
---|
[591] | 3490 | transform=get(handles.TransformPath,'UserData'); |
---|
[515] | 3491 | if (~isa(transform,'function_handle')||nargin(transform)<3) |
---|
[580] | 3492 | set(handles.uvmat,'UserData',UvData) |
---|
[591] | 3493 | set(handles.TransformName,'value',2); % set transform fct to 'sub_field' if the current fct does not accept two input fields |
---|
[669] | 3494 | TransformName_Callback(hObject, eventdata, handles)% activate transform_fct_Callback and refresh current plot |
---|
[515] | 3495 | else |
---|
| 3496 | check_refresh=1; |
---|
| 3497 | end |
---|
[387] | 3498 | end |
---|
| 3499 | |
---|
[713] | 3500 | % inputfilerefresh the current plot if it has not been done previously |
---|
[515] | 3501 | if check_refresh |
---|
| 3502 | UvData.FileName_1='';% desactivate the use of a constant second file |
---|
| 3503 | set(handles.uvmat,'UserData',UvData) |
---|
| 3504 | num_i1=stra2num(get(handles.i1,'String')); |
---|
| 3505 | num_i2=stra2num(get(handles.i2,'String')); |
---|
| 3506 | num_j1=stra2num(get(handles.j1,'String')); |
---|
| 3507 | num_j2=stra2num(get(handles.j2,'String')); |
---|
| 3508 | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(['xx' FileIndex_1]); |
---|
| 3509 | errormsg=refresh_field(handles,FileName,FileName_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1); |
---|
| 3510 | if ~isempty(errormsg) |
---|
| 3511 | msgbox_uvmat('ERROR',errormsg); |
---|
| 3512 | else |
---|
| 3513 | set(handles.i1,'BackgroundColor',[1 1 1]) |
---|
| 3514 | set(handles.i2,'BackgroundColor',[1 1 1]) |
---|
| 3515 | set(handles.j1,'BackgroundColor',[1 1 1]) |
---|
| 3516 | set(handles.j2,'BackgroundColor',[1 1 1]) |
---|
| 3517 | set(handles.FileIndex,'BackgroundColor',[1 1 1]) |
---|
| 3518 | set(handles.FileIndex_1,'BackgroundColor',[1 1 1]) |
---|
| 3519 | end |
---|
[713] | 3520 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0]) |
---|
[387] | 3521 | end |
---|
| 3522 | |
---|
[580] | 3523 | |
---|
[622] | 3524 | %------------------------------------------------------------------------ |
---|
[387] | 3525 | % --- reset civ buttons |
---|
| 3526 | function reset_vel_type(handles_civ0,handle1) |
---|
[622] | 3527 | %------------------------------------------------------------------------ |
---|
[387] | 3528 | for ibutton=1:length(handles_civ0) |
---|
| 3529 | set(handles_civ0(ibutton),'BackgroundColor',[0.831 0.816 0.784]) |
---|
| 3530 | set(handles_civ0(ibutton),'Value',0) |
---|
| 3531 | end |
---|
| 3532 | if exist('handle1','var')%handles of selected button |
---|
| 3533 | set(handle1,'BackgroundColor',[1 1 0]) |
---|
| 3534 | end |
---|
| 3535 | |
---|
[580] | 3536 | %----------------------------------------------------------------------- |
---|
[387] | 3537 | % --- Executes on button press in MENUVOLUME. |
---|
| 3538 | function VOLUME_Callback(hObject, eventdata, handles) |
---|
[580] | 3539 | %----------------------------------------------------------------------- |
---|
[387] | 3540 | %errordlg('command VOL not implemented yet') |
---|
| 3541 | if ishandle(handles.UVMAT_title) |
---|
| 3542 | delete(handles.UVMAT_title) |
---|
| 3543 | end |
---|
| 3544 | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
---|
| 3545 | if isequal(get(handles.VOLUME,'Value'),1) |
---|
| 3546 | set(handles.CheckZoom,'Value',0) |
---|
[623] | 3547 | % set(handles.CheckZoom,'BackgroundColor',[0.7 0.7 0.7]) |
---|
[387] | 3548 | set(handles.edit_vect,'Value',0) |
---|
| 3549 | edit_vect_Callback(hObject, eventdata, handles) |
---|
[650] | 3550 | set(handles.CheckEditObject,'Value',0) |
---|
| 3551 | % set(handles.CheckEditObject,'BackgroundColor',[0.7 0.7 0.7]) |
---|
[387] | 3552 | % set(handles.cal,'Value',0) |
---|
| 3553 | % set(handles.cal,'BackgroundColor',[0 1 0]) |
---|
| 3554 | set(handles.edit_vect,'Value',0) |
---|
| 3555 | edit_vect_Callback(hObject, eventdata, handles) |
---|
| 3556 | %initiate set_object GUI |
---|
| 3557 | data.Name='VOLUME'; |
---|
| 3558 | if isfield(UvData,'CoordType') |
---|
| 3559 | data.CoordType=UvData.CoordType; |
---|
| 3560 | end |
---|
[575] | 3561 | if isfield(UvData.Field,'CoordMesh')&~isempty(UvData.Field.CoordMesh) |
---|
[404] | 3562 | data.RangeX=[UvData.Field.XMin UvData.Field.XMax]; |
---|
| 3563 | data.RangeY=[UvData.Field.YMin UvData.Field.YMax]; |
---|
[575] | 3564 | data.DX=UvData.Field.CoordMesh; |
---|
| 3565 | data.DY=UvData.Field.CoordMesh; |
---|
[387] | 3566 | elseif isfield(UvData.Field,'AX')&isfield(UvData.Field,'AY')& isfield(UvData.Field,'A')%only image |
---|
| 3567 | np=size(UvData.Field.A); |
---|
| 3568 | meshx=(UvData.Field.AX(end)-UvData.Field.AX(1))/np(2); |
---|
| 3569 | meshy=abs(UvData.Field.AY(end)-UvData.Field.AY(1))/np(1); |
---|
| 3570 | data.RangeY=max(meshx,meshy); |
---|
| 3571 | data.RangeX=max(meshx,meshy); |
---|
| 3572 | data.DX=max(meshx,meshy); |
---|
| 3573 | end |
---|
| 3574 | data.ParentButton=handles.VOLUME; |
---|
| 3575 | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters |
---|
| 3576 | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface with action on haxes, |
---|
| 3577 | % associate the set_object interface handle to the plotting axes |
---|
[609] | 3578 | %set(hset_object,'Position',get(handles.uvmat,'Position')+UvData.OpenParam.PosSetObject) |
---|
[387] | 3579 | UvData.MouseAction='create_object'; |
---|
| 3580 | else |
---|
| 3581 | set(handles.VOLUME,'BackgroundColor',[0 1 0]) |
---|
| 3582 | end |
---|
| 3583 | set(handles.uvmat,'UserData',UvData) |
---|
| 3584 | |
---|
| 3585 | %------------------------------------------------------- |
---|
| 3586 | function edit_vect_Callback(hObject, eventdata, handles) |
---|
| 3587 | %------------------------------------------------------- |
---|
| 3588 | % |
---|
| 3589 | if isequal(get(handles.edit_vect,'Value'),1) |
---|
[581] | 3590 | VelTypeMenu=get(handles.VelType,'String'); |
---|
| 3591 | VelType=VelTypeMenu{get(handles.VelType,'Value')}; |
---|
| 3592 | if ~strcmp(VelType,'civ2') && ~strcmp(VelType,'civ1') |
---|
[387] | 3593 | msgbox_uvmat('ERROR','manual correction only possible for CIV1 or CIV2 velocity fields') |
---|
| 3594 | end |
---|
| 3595 | set(handles.record,'Visible','on') |
---|
| 3596 | set(handles.edit_vect,'BackgroundColor',[1 1 0]) |
---|
[650] | 3597 | set(handles.CheckEditObject,'Value',0) |
---|
[387] | 3598 | set(handles.CheckZoom,'Value',0) |
---|
| 3599 | set(gcf,'Pointer','arrow') |
---|
| 3600 | else |
---|
| 3601 | set(handles.record,'Visible','off') |
---|
| 3602 | set(handles.edit_vect,'BackgroundColor',[0.7 0.7 0.7]) |
---|
| 3603 | end |
---|
| 3604 | |
---|
| 3605 | %---------------------------------------------- |
---|
| 3606 | function save_mask_Callback(hObject, eventdata, handles) |
---|
| 3607 | %----------------------------------------------------------------------- |
---|
| 3608 | UvData=get(handles.uvmat,'UserData'); |
---|
| 3609 | |
---|
| 3610 | flag=1; |
---|
| 3611 | npx=size(UvData.Field.A,2); |
---|
| 3612 | npy=size(UvData.Field.A,1); |
---|
| 3613 | xi=0.5:npx-0.5; |
---|
| 3614 | yi=0.5:npy-0.5; |
---|
| 3615 | [Xi,Yi]=meshgrid(xi,yi); |
---|
[622] | 3616 | if isfield(UvData,'ProjObject') |
---|
| 3617 | for iobj=1:length(UvData.ProjObject) |
---|
| 3618 | ObjectData=UvData.ProjObject{iobj}; |
---|
[387] | 3619 | if isfield(ObjectData,'ProjMode') &&(isequal(ObjectData.ProjMode,'mask_inside')||isequal(ObjectData.ProjMode,'mask_outside')); |
---|
| 3620 | flagobj=1; |
---|
| 3621 | testphys=0; %coordinates in pixels by default |
---|
| 3622 | if isfield(ObjectData,'CoordType') && isequal(ObjectData.CoordType,'phys') |
---|
| 3623 | if isfield(UvData,'XmlData')&& isfield(UvData.XmlData{1},'GeometryCalib') |
---|
| 3624 | Calib=UvData.XmlData{1}.GeometryCalib; |
---|
| 3625 | testphys=1; |
---|
| 3626 | end |
---|
| 3627 | end |
---|
| 3628 | if isfield(ObjectData,'Coord')& isfield(ObjectData,'Style') |
---|
| 3629 | if isequal(ObjectData.Type,'polygon') |
---|
| 3630 | X=ObjectData.Coord(:,1); |
---|
| 3631 | Y=ObjectData.Coord(:,2); |
---|
| 3632 | if testphys |
---|
| 3633 | [X,Y]=px_XYZ(Calib,X,Y,0);% to generalise with 3D cases |
---|
| 3634 | end |
---|
| 3635 | flagobj=~inpolygon(Xi,Yi,X',Y');%=0 inside the polygon, 1 outside |
---|
| 3636 | elseif isequal(ObjectData.Type,'ellipse') |
---|
| 3637 | if testphys |
---|
| 3638 | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys |
---|
| 3639 | end |
---|
| 3640 | RangeX=max(ObjectData.RangeX); |
---|
| 3641 | RangeY=max(ObjectData.RangeY); |
---|
| 3642 | X2Max=RangeX*RangeX; |
---|
| 3643 | Y2Max=RangeY*RangeY; |
---|
| 3644 | distX=(Xi-ObjectData.Coord(1,1)); |
---|
| 3645 | distY=(Yi-ObjectData.Coord(1,2)); |
---|
| 3646 | flagobj=(distX.*distX/X2Max+distY.*distY/Y2Max)>1; |
---|
| 3647 | elseif isequal(ObjectData.Type,'rectangle') |
---|
| 3648 | if testphys |
---|
| 3649 | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys |
---|
| 3650 | end |
---|
| 3651 | distX=abs(Xi-ObjectData.Coord(1,1)); |
---|
| 3652 | distY=abs(Yi-ObjectData.Coord(1,2)); |
---|
| 3653 | flagobj=distX>max(ObjectData.RangeX) | distY>max(ObjectData.RangeY); |
---|
| 3654 | end |
---|
| 3655 | if isequal(ObjectData.ProjMode,'mask_outside') |
---|
| 3656 | flagobj=~flagobj; |
---|
| 3657 | end |
---|
| 3658 | flag=flag & flagobj; |
---|
| 3659 | end |
---|
| 3660 | end |
---|
| 3661 | end |
---|
| 3662 | end |
---|
| 3663 | % flag=~flag; |
---|
| 3664 | %mask name |
---|
| 3665 | RootPath=get(handles.RootPath,'String'); |
---|
| 3666 | RootFile=get(handles.RootFile,'String'); |
---|
| 3667 | RootFile=regexprep(RootFile,'\<[\\/]|[\\/]\>','');%suppress possible / or \ separator at the beginning or the end of the string |
---|
| 3668 | filebase=fullfile(RootPath,RootFile); |
---|
| 3669 | list=get(handles.masklevel,'String'); |
---|
| 3670 | masknumber=num2str(length(list)); |
---|
| 3671 | maskindex=get(handles.masklevel,'Value'); |
---|
| 3672 | mask_name=fullfile_uvmat(RootPath,SubDir,[RootFile '_' masknumber 'mask'],'.png','_1',maskindex); |
---|
| 3673 | %mask_name=name_generator([filebase '_' masknumber 'mask'],maskindex,1,'.png','_i'); |
---|
| 3674 | imflag=uint8(255*(0.392+0.608*flag));% =100 for flag=0 (vectors not computed when 20<imflag<200) |
---|
| 3675 | imflag=flipdim(imflag,1); |
---|
| 3676 | % imflag=uint8(255*flag);% =0 for flag=0 (vectors=0 when 20<imflag<200) |
---|
| 3677 | msgbox_uvmat('CONFIRMATION',[mask_name ' saved']) |
---|
| 3678 | imwrite(imflag,mask_name,'BitDepth',8); |
---|
| 3679 | |
---|
| 3680 | %display the mask |
---|
| 3681 | figure; |
---|
| 3682 | vec=linspace(0,1,256);%define a linear greyscale colormap |
---|
| 3683 | map=[vec' vec' vec']; |
---|
| 3684 | colormap(map) |
---|
| 3685 | |
---|
| 3686 | image(imflag); |
---|
| 3687 | |
---|
[622] | 3688 | %------------------------------------------------------------------------ |
---|
| 3689 | %------------------------------------------------------------------------ |
---|
[387] | 3690 | % - FUNCTIONS FOR SETTING PLOTTING PARAMETERS |
---|
| 3691 | |
---|
[622] | 3692 | %------------------------------------------------------------------------ |
---|
| 3693 | %------------------------------------------------------------------------ |
---|
[591] | 3694 | % --- Executes on selection change in TransformName. |
---|
[508] | 3695 | |
---|
[591] | 3696 | function TransformName_Callback(hObject, eventdata, handles) |
---|
[622] | 3697 | %------------------------------------------------------------------------ |
---|
[714] | 3698 | set(handles.TransformName,'backgroundColor',[1 1 0])% indicate activation of the menu |
---|
| 3699 | drawnow |
---|
[387] | 3700 | UvData=get(handles.uvmat,'UserData'); |
---|
[671] | 3701 | menu=get(handles.TransformName,'String');%refresh |
---|
[591] | 3702 | ichoice=get(handles.TransformName,'Value');%item number in the menu |
---|
[507] | 3703 | transform_name=menu{ichoice};% choice of the transform fct |
---|
[591] | 3704 | list_path=get(handles.TransformName,'UserData'); |
---|
[507] | 3705 | |
---|
[689] | 3706 | %% handles uicontrol visibility |
---|
| 3707 | if isempty(transform_name) |
---|
| 3708 | set(handles.TransformPath,'Visible','off') |
---|
| 3709 | else |
---|
| 3710 | set(handles.TransformPath,'Visible','on') |
---|
| 3711 | end |
---|
| 3712 | |
---|
| 3713 | |
---|
[507] | 3714 | %% add a new item to the menu if the option 'more...' has been selected |
---|
[591] | 3715 | prev_path=fullfile(get(handles.TransformPath,'String')); |
---|
[508] | 3716 | if ~exist(prev_path,'dir') |
---|
| 3717 | prev_path=fullfile(fileparts(which('uvmat')),'transform_field'); |
---|
| 3718 | end |
---|
[507] | 3719 | if strcmp(transform_name,'more...'); |
---|
[671] | 3720 | transform_fct_chosen=uigetfile_uvmat('Pick the transform function',prev_path,'.m'); |
---|
| 3721 | if ~isempty(transform_fct_chosen) |
---|
| 3722 | [PathName,transform_name]=fileparts(transform_fct_chosen); |
---|
[648] | 3723 | ichoice=find(strcmp(transform_name,menu),1);%look for the selected fct in the existing menu |
---|
| 3724 | if isempty(ichoice)% if the item is not found, add it to the menu (before 'more...' and select it) |
---|
| 3725 | menu=[menu(1:end-1);{transform_name};{'more...'}]; |
---|
| 3726 | ichoice=numel(menu)-1; |
---|
[507] | 3727 | end |
---|
[648] | 3728 | list_path{ichoice}=PathName;%update the list fo fct paths |
---|
| 3729 | set(handles.TransformName,'String',menu) |
---|
| 3730 | set(handles.TransformName,'Value',ichoice) |
---|
| 3731 | |
---|
| 3732 | % save the new menu in the personal file 'uvmat_perso.mat' |
---|
| 3733 | dir_perso=prefdir;%personal Matalb directory |
---|
| 3734 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 3735 | if exist(profil_perso,'file') |
---|
| 3736 | nb_builtin=UvData.OpenParam.NbBuiltin;% number of 'builtin' (basic) transform fcts in uvmat |
---|
| 3737 | if nb_builtin<numel(list_path) |
---|
| 3738 | for ilist=nb_builtin+1:numel(list_path) |
---|
| 3739 | transform_fct{ilist-nb_builtin}=[fullfile(list_path{ilist},menu{ilist}) '.m']; |
---|
| 3740 | end |
---|
| 3741 | save (profil_perso,'transform_fct','-append'); %store the root name for future opening of uvmat |
---|
| 3742 | end |
---|
[523] | 3743 | end |
---|
[507] | 3744 | end |
---|
[387] | 3745 | end |
---|
| 3746 | |
---|
[507] | 3747 | %% create the function handle of the selected fct |
---|
| 3748 | if isempty(list_path{ichoice})% case of no selected fct |
---|
| 3749 | transform_handle=[]; |
---|
[387] | 3750 | else |
---|
[507] | 3751 | if ~exist(list_path{ichoice},'dir') |
---|
| 3752 | msgbox_uvmat('ERROR','invalid fct path: select the transform fct again with the option more...') |
---|
| 3753 | return |
---|
| 3754 | end |
---|
| 3755 | current_dir=pwd;%current working dir |
---|
| 3756 | cd(list_path{ichoice}) |
---|
| 3757 | transform_handle=str2func(transform_name); |
---|
| 3758 | cd(current_dir) |
---|
[387] | 3759 | end |
---|
[591] | 3760 | set(handles.TransformPath,'String',list_path{ichoice}) |
---|
| 3761 | set(handles.TransformPath,'UserData',transform_handle) |
---|
| 3762 | set(handles.TransformName,'UserData',list_path) |
---|
[387] | 3763 | |
---|
[591] | 3764 | %% update the ToolTip string of the menu TransformName with the first line of the selected fct file |
---|
[507] | 3765 | if isempty(list_path{ichoice})% case of no selected fct |
---|
[591] | 3766 | set(handles.TransformName,'ToolTipString','transform_fct:choose a transform function') |
---|
[507] | 3767 | else |
---|
| 3768 | try |
---|
| 3769 | [fid,errormsg] =fopen([fullfile(list_path{ichoice},transform_name) '.m']); |
---|
| 3770 | InputText=textscan(fid,'%s',1,'delimiter','\n'); |
---|
[714] | 3771 | fclose(fid); |
---|
[591] | 3772 | set(handles.TransformName,'ToolTipString',['transform_fct: ' InputText{1}{1}])% put the first line of the selected function as tooltip help |
---|
[507] | 3773 | end |
---|
| 3774 | end |
---|
| 3775 | |
---|
| 3776 | %% adapt the GUI to the input/output conditions of the selected transform fct |
---|
[508] | 3777 | DataOut=[]; |
---|
| 3778 | CoordUnit=''; |
---|
| 3779 | CoordUnitPrev=''; |
---|
| 3780 | if isfield(UvData,'Field')&&isfield(UvData.Field,'CoordUnit') |
---|
| 3781 | CoordUnitPrev=UvData.Field.CoordUnit; |
---|
| 3782 | end |
---|
| 3783 | if ~isempty(list_path{ichoice}) |
---|
| 3784 | if nargin(transform_handle)>1 && isfield(UvData,'XmlData')&&~isempty(UvData.XmlData) |
---|
| 3785 | XmlData=UvData.XmlData{1}; |
---|
| 3786 | DataOut=feval(transform_handle,'*',XmlData); |
---|
[641] | 3787 | if isfield(DataOut,'CoordUnit')% set the requested coord unit (info used to possibly delete the current projection objects) |
---|
[508] | 3788 | CoordUnit=DataOut.CoordUnit; |
---|
[507] | 3789 | end |
---|
[641] | 3790 | if isfield(DataOut,'InputFieldType')% to be used to impose a type of input file (eg. for image transform) |
---|
[508] | 3791 | UvData.InputFieldType=DataOut.InputFieldType; |
---|
| 3792 | end |
---|
[641] | 3793 | if isfield(DataOut,'XmlData')% used to add transform parameters at selection of the transform fct |
---|
| 3794 | ListFields=fieldnames(DataOut.XmlData); |
---|
| 3795 | for ilist=1:numel(ListFields) |
---|
| 3796 | UvData.XmlData{1}.(ListFields{ilist})=DataOut.XmlData.(ListFields{ilist}); |
---|
| 3797 | end |
---|
| 3798 | end |
---|
[508] | 3799 | else |
---|
| 3800 | DataOut=feval(transform_handle,'*'); |
---|
[507] | 3801 | end |
---|
| 3802 | end |
---|
| 3803 | |
---|
[387] | 3804 | |
---|
[508] | 3805 | %% delete drawn objects if the output CooordUnit is different from the previous one |
---|
| 3806 | if ~strcmp(CoordUnit,CoordUnitPrev) |
---|
[541] | 3807 | set(handles.CheckFixLimits,'Value',0) |
---|
[627] | 3808 | % set(handles.CheckFixLimits,'BackgroundColor',[0.7 0.7 0.7]) |
---|
[508] | 3809 | hother=findobj('Tag','proj_object');%find all the proj objects |
---|
| 3810 | for iobj=1:length(hother) |
---|
| 3811 | delete_object(hother(iobj)) |
---|
| 3812 | end |
---|
| 3813 | hother=findobj('Tag','DeformPoint');%find all the proj objects |
---|
| 3814 | for iobj=1:length(hother) |
---|
| 3815 | delete_object(hother(iobj)) |
---|
| 3816 | end |
---|
| 3817 | hh=findobj('Tag','calib_points'); |
---|
| 3818 | if ~isempty(hh) |
---|
| 3819 | delete(hh) |
---|
| 3820 | end |
---|
| 3821 | hhh=findobj('Tag','calib_marker'); |
---|
| 3822 | if ~isempty(hhh) |
---|
| 3823 | delete(hhh) |
---|
| 3824 | end |
---|
| 3825 | set(handles.ListObject,'Value',1) |
---|
| 3826 | set(handles.ListObject,'String',{''}) |
---|
| 3827 | set(handles.ListObject_1,'Value',1) |
---|
| 3828 | set(handles.ListObject_1,'String',{''}) |
---|
[650] | 3829 | set(handles.CheckViewObject,'value',0) |
---|
| 3830 | CheckViewObject_Callback(hObject, eventdata, handles) |
---|
| 3831 | set(handles.CheckViewField,'value',0) |
---|
| 3832 | CheckViewField_Callback(hObject, eventdata, handles) |
---|
| 3833 | set(handles.CheckEditObject,'Value',0) |
---|
| 3834 | CheckEditObject_Callback(hObject, eventdata, handles) |
---|
[622] | 3835 | UvData.ProjObject={[]}; |
---|
[387] | 3836 | end |
---|
[508] | 3837 | set(handles.uvmat,'UserData',UvData) |
---|
[714] | 3838 | set(handles.TransformName,'backgroundColor',[1 1 1])% indicate desactivation of the menu |
---|
| 3839 | drawnow |
---|
[387] | 3840 | |
---|
[713] | 3841 | %% inputfilerefresh the current plot |
---|
[515] | 3842 | if isempty(list_path{ichoice}) || nargin(transform_handle)<3 |
---|
| 3843 | set(handles.SubField,'Value',0) |
---|
| 3844 | SubField_Callback(hObject, eventdata, handles) |
---|
| 3845 | else |
---|
[713] | 3846 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[515] | 3847 | end |
---|
[387] | 3848 | |
---|
| 3849 | %------------------------------------------------ |
---|
| 3850 | %CALLBACKS FOR PLOTTING PARAMETERS |
---|
| 3851 | %------------------------------------------------- |
---|
[405] | 3852 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 3853 | % Plot coordinates |
---|
| 3854 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
[387] | 3855 | %------------------------------------------------------------------------ |
---|
| 3856 | function num_MinX_Callback(hObject, eventdata, handles) |
---|
| 3857 | %------------------------------------------------------------------------ |
---|
| 3858 | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
---|
[627] | 3859 | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
---|
[387] | 3860 | update_plot(handles); |
---|
| 3861 | |
---|
| 3862 | %------------------------------------------------------------------------ |
---|
| 3863 | function num_MaxX_Callback(hObject, eventdata, handles) |
---|
| 3864 | %------------------------------------------------------------------------ |
---|
| 3865 | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
---|
[627] | 3866 | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
---|
[387] | 3867 | update_plot(handles); |
---|
| 3868 | |
---|
| 3869 | %------------------------------------------------------------------------ |
---|
| 3870 | function num_MinY_Callback(hObject, eventdata, handles) |
---|
| 3871 | %------------------------------------------ |
---|
| 3872 | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
---|
[627] | 3873 | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
---|
[387] | 3874 | update_plot(handles); |
---|
| 3875 | |
---|
| 3876 | %------------------------------------------------------------------------ |
---|
| 3877 | function num_MaxY_Callback(hObject, eventdata, handles) |
---|
| 3878 | %------------------------------------------------------------------------ |
---|
| 3879 | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
---|
[627] | 3880 | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
---|
[387] | 3881 | update_plot(handles); |
---|
| 3882 | |
---|
[405] | 3883 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 3884 | % Scalar or image representation |
---|
| 3885 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
[387] | 3886 | %------------------------------------------------------------------------ |
---|
| 3887 | function num_MinA_Callback(hObject, eventdata, handles) |
---|
| 3888 | %------------------------------------------ |
---|
| 3889 | set(handles.CheckFixScalar,'Value',1) %suppress auto mode |
---|
[627] | 3890 | % set(handles.CheckFixScalar,'BackgroundColor',[1 1 0]) |
---|
[387] | 3891 | MinA=str2double(get(handles.num_MinA,'String')); |
---|
| 3892 | MaxA=str2double(get(handles.num_MaxA,'String')); |
---|
| 3893 | if MinA>MaxA% switch minA and maxA in case of error |
---|
| 3894 | MinA_old=MinA; |
---|
| 3895 | MinA=MaxA; |
---|
| 3896 | MaxA=MinA_old; |
---|
| 3897 | set(handles.num_MinA,'String',num2str(MinA,5)); |
---|
| 3898 | set(handles.num_MaxA,'String',num2str(MaxA,5)); |
---|
| 3899 | end |
---|
| 3900 | update_plot(handles); |
---|
| 3901 | |
---|
| 3902 | %------------------------------------------------------------------------ |
---|
| 3903 | function num_MaxA_Callback(hObject, eventdata, handles) |
---|
| 3904 | %------------------------------------------------------------------------ |
---|
| 3905 | set(handles.CheckFixScalar,'Value',1) %suppress auto mode |
---|
[627] | 3906 | % set(handles.CheckFixScalar,'BackgroundColor',[1 1 0]) |
---|
[387] | 3907 | MinA=str2double(get(handles.num_MinA,'String')); |
---|
| 3908 | MaxA=str2double(get(handles.num_MaxA,'String')); |
---|
| 3909 | if MinA>MaxA% switch minA and maxA in case of error |
---|
| 3910 | MinA_old=MinA; |
---|
| 3911 | MinA=MaxA; |
---|
| 3912 | MaxA=MinA_old; |
---|
| 3913 | set(handles.num_MinA,'String',num2str(MinA,5)); |
---|
| 3914 | set(handles.num_MaxA,'String',num2str(MaxA,5)); |
---|
| 3915 | end |
---|
| 3916 | update_plot(handles); |
---|
| 3917 | |
---|
| 3918 | %------------------------------------------------------------------------ |
---|
| 3919 | function CheckFixScalar_Callback(hObject, eventdata, handles) |
---|
| 3920 | %------------------------------------------------------------------------ |
---|
| 3921 | test=get(handles.CheckFixScalar,'Value'); |
---|
| 3922 | if test |
---|
[627] | 3923 | % set(handles.CheckFixScalar,'BackgroundColor',[1 1 0]) |
---|
[387] | 3924 | else |
---|
[627] | 3925 | % set(handles.CheckFixScalar,'BackgroundColor',[0.7 0.7 0.7]) |
---|
[387] | 3926 | update_plot(handles); |
---|
| 3927 | end |
---|
| 3928 | |
---|
| 3929 | %------------------------------------------------------------------- |
---|
| 3930 | function CheckBW_Callback(hObject, eventdata, handles) |
---|
| 3931 | %------------------------------------------------------------------- |
---|
| 3932 | update_plot(handles); |
---|
| 3933 | |
---|
| 3934 | %------------------------------------------------------------------- |
---|
[428] | 3935 | function num_Opacity_Callback(hObject, eventdata, handles) |
---|
| 3936 | update_plot(handles); |
---|
| 3937 | %------------------------------------------------------------------- |
---|
| 3938 | |
---|
| 3939 | %------------------------------------------------------------------- |
---|
[387] | 3940 | function ListContour_Callback(hObject, eventdata, handles) |
---|
| 3941 | %------------------------------------------------------------------- |
---|
| 3942 | val=get(handles.ListContour,'Value'); |
---|
[688] | 3943 | if val==2% option 'contours' |
---|
[387] | 3944 | set(handles.interval_txt,'Visible','on') |
---|
| 3945 | set(handles.num_IncrA,'Visible','on') |
---|
[688] | 3946 | set(handles.num_IncrA,'String','')% refresh contour interval |
---|
| 3947 | % set(handles.opacity_txt,'Visible','off') |
---|
| 3948 | % set(handles.num_Opacity,'Visible','off') |
---|
| 3949 | else % option 'image' |
---|
[387] | 3950 | set(handles.interval_txt,'Visible','off') |
---|
| 3951 | set(handles.num_IncrA,'Visible','off') |
---|
[688] | 3952 | % set(handles.opacity_txt,'Visible','on') |
---|
| 3953 | % set(handles.num_Opacity,'Visible','on') |
---|
[387] | 3954 | end |
---|
| 3955 | update_plot(handles); |
---|
| 3956 | |
---|
| 3957 | %------------------------------------------------------------------- |
---|
| 3958 | function num_IncrA_Callback(hObject, eventdata, handles) |
---|
| 3959 | %------------------------------------------------------------------- |
---|
| 3960 | update_plot(handles); |
---|
| 3961 | |
---|
[405] | 3962 | |
---|
| 3963 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 3964 | % Vector representation |
---|
| 3965 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
[387] | 3966 | %------------------------------------------------------------------- |
---|
| 3967 | function CheckHideWarning_Callback(hObject, eventdata, handles) |
---|
| 3968 | %------------------------------------------------------------------- |
---|
| 3969 | update_plot(handles); |
---|
| 3970 | |
---|
| 3971 | %------------------------------------------------------------------- |
---|
| 3972 | function CheckHideFalse_Callback(hObject, eventdata, handles) |
---|
| 3973 | %------------------------------------------------------------------- |
---|
| 3974 | update_plot(handles); |
---|
| 3975 | |
---|
| 3976 | %------------------------------------------------------------------- |
---|
| 3977 | function num_VecScale_Callback(hObject, eventdata, handles) |
---|
| 3978 | %------------------------------------------------------------------- |
---|
| 3979 | set(handles.CheckFixVectors,'Value',1); |
---|
| 3980 | set(handles.CheckFixVectors,'BackgroundColor',[1 1 0]) |
---|
| 3981 | update_plot(handles); |
---|
| 3982 | |
---|
| 3983 | %------------------------------------------------------------------- |
---|
| 3984 | function CheckFixVectors_Callback(hObject, eventdata, handles) |
---|
| 3985 | %------------------------------------------------------------------- |
---|
[688] | 3986 | if ~get(handles.CheckFixVectors,'Value') |
---|
[387] | 3987 | update_plot(handles); |
---|
| 3988 | end |
---|
| 3989 | |
---|
| 3990 | %------------------------------------------------------------------------ |
---|
| 3991 | % --- Executes on selection change in CheckDecimate4 (nb_vec/4). |
---|
[622] | 3992 | %------------------------------------------------------------------------ |
---|
[387] | 3993 | function CheckDecimate4_Callback(hObject, eventdata, handles) |
---|
[622] | 3994 | |
---|
[581] | 3995 | if isequal(get(handles.CheckDecimate4,'Value'),1) |
---|
| 3996 | set(handles.CheckDecimate16,'Value',0) |
---|
| 3997 | end |
---|
[387] | 3998 | update_plot(handles); |
---|
| 3999 | |
---|
| 4000 | %------------------------------------------------------------------------ |
---|
[581] | 4001 | % --- Executes on selection change in CheckDecimate16 (nb_vec/16). |
---|
[622] | 4002 | %------------------------------------------------------------------------ |
---|
[581] | 4003 | function CheckDecimate16_Callback(hObject, eventdata, handles) |
---|
[622] | 4004 | |
---|
[581] | 4005 | if isequal(get(handles.CheckDecimate16,'Value'),1) |
---|
| 4006 | set(handles.CheckDecimate4,'Value',0) |
---|
| 4007 | end |
---|
| 4008 | update_plot(handles); |
---|
| 4009 | |
---|
| 4010 | %------------------------------------------------------------------------ |
---|
[405] | 4011 | % --- Executes on selection change in ColorCode menu |
---|
| 4012 | function ColorCode_Callback(hObject, eventdata, handles) |
---|
[387] | 4013 | %------------------------------------------------------------------------ |
---|
[405] | 4014 | % edit the choice for color code |
---|
| 4015 | update_color_code_boxes(handles); |
---|
| 4016 | update_plot(handles); |
---|
| 4017 | |
---|
| 4018 | %------------------------------------------------------------------------ |
---|
| 4019 | function update_color_code_boxes(handles) |
---|
| 4020 | %------------------------------------------------------------------------ |
---|
| 4021 | list_code=get(handles.ColorCode,'String');% list menu fields |
---|
| 4022 | colcode= list_code{get(handles.ColorCode,'Value')}; % selected field |
---|
| 4023 | enable_slider='off';%default |
---|
| 4024 | enable_bounds='off';%default |
---|
| 4025 | enable_scalar='off';%default |
---|
| 4026 | switch colcode |
---|
| 4027 | case {'rgb','bgr'} |
---|
| 4028 | enable_slider='on'; |
---|
| 4029 | enable_bounds='on'; |
---|
| 4030 | enable_scalar='on'; |
---|
| 4031 | case '64 colors' |
---|
| 4032 | enable_bounds='on'; |
---|
| 4033 | enable_scalar='on'; |
---|
| 4034 | end |
---|
| 4035 | set(handles.Slider1,'Visible',enable_slider) |
---|
| 4036 | set(handles.Slider2,'Visible', enable_slider) |
---|
| 4037 | set(handles.num_ColCode1,'Visible',enable_slider) |
---|
| 4038 | set(handles.num_ColCode2,'Visible',enable_slider) |
---|
| 4039 | set(handles.TitleColCode1,'Visible',enable_slider) |
---|
| 4040 | set(handles.TitleColCode2,'Visible',enable_slider) |
---|
| 4041 | set(handles.CheckFixVecColor,'Visible',enable_bounds) |
---|
| 4042 | set(handles.num_MinVec,'Visible',enable_bounds) |
---|
| 4043 | set(handles.num_MaxVec,'Visible',enable_bounds) |
---|
| 4044 | set(handles.ColorScalar,'Visible',enable_scalar) |
---|
[387] | 4045 | set_vec_col_bar(handles) |
---|
[405] | 4046 | |
---|
| 4047 | %------------------------------------------------------------------ |
---|
| 4048 | % --- Executes on selection change in ColorScalar: choice of the color code. |
---|
| 4049 | function ColorScalar_Callback(hObject, eventdata, handles) |
---|
| 4050 | %------------------------------------------------------------------ |
---|
| 4051 | % edit the choice for color code |
---|
| 4052 | list_scalar=get(handles.ColorScalar,'String');% list menu fields |
---|
| 4053 | col_scalar= list_scalar{get(handles.ColorScalar,'Value')}; % selected field |
---|
| 4054 | if isequal(col_scalar,'ima_cor') |
---|
| 4055 | set(handles.CheckFixVecColor,'Value',1)%fixed scale by default |
---|
| 4056 | ColorCode='rgb'; |
---|
| 4057 | set(handles.num_MinVec,'String','0') |
---|
| 4058 | set(handles.num_MaxVec,'String','1') |
---|
| 4059 | set(handles.num_ColCode1,'String','0.333') |
---|
| 4060 | set(handles.num_ColCode2,'String','0.666') |
---|
| 4061 | else |
---|
| 4062 | set(handles.CheckFixVecColor,'Value',0)%auto scale between min,max by default |
---|
| 4063 | ColorCode='64 colors'; |
---|
| 4064 | end |
---|
| 4065 | ColorCodeList=get(handles.ColorCode,'String'); |
---|
| 4066 | ichoice=find(strcmp(ColorCode,ColorCodeList),1); |
---|
| 4067 | set(handles.ColorCode,'Value',ichoice)% set color code in the menu |
---|
| 4068 | |
---|
| 4069 | update_color_code_boxes(handles); |
---|
| 4070 | %replot the current graph |
---|
[713] | 4071 | REFRESH_Callback(hObject, eventdata, handles) |
---|
[405] | 4072 | |
---|
| 4073 | %---------------------------------------------------------------- |
---|
| 4074 | % -- Executes on slider movement to set the color code |
---|
| 4075 | % |
---|
| 4076 | function Slider1_Callback(hObject, eventdata, handles) |
---|
| 4077 | %------------------------------------------------------------------ |
---|
| 4078 | slider1=get(handles.Slider1,'Value'); |
---|
| 4079 | min_val=str2num(get(handles.num_MinVec,'String')); |
---|
| 4080 | max_val=str2num(get(handles.num_MaxVec,'String')); |
---|
| 4081 | col=min_val+(max_val-min_val)*slider1; |
---|
| 4082 | set(handles.num_ColCode1,'String',num2str(col)) |
---|
| 4083 | if(get(handles.Slider2,'Value') < col)%move also the second slider at the same value if needed |
---|
| 4084 | set(handles.Slider2,'Value',col) |
---|
| 4085 | set(handles.num_ColCode2,'String',num2str(col)) |
---|
| 4086 | end |
---|
| 4087 | set_vec_col_bar(handles) |
---|
[387] | 4088 | update_plot(handles); |
---|
| 4089 | |
---|
[405] | 4090 | %---------------------------------------------------------------- |
---|
| 4091 | % Executes on slider movement to set the color code |
---|
| 4092 | %---------------------------------------------------------------- |
---|
| 4093 | function Slider2_Callback(hObject, eventdata, handles) |
---|
| 4094 | slider2=get(handles.Slider2,'Value'); |
---|
| 4095 | min_val=str2num(get(handles.num_MinVec,'String')); |
---|
| 4096 | max_val=str2num(get(handles.num_MaxVec,'String')); |
---|
| 4097 | col=min_val+(max_val-min_val)*slider2; |
---|
| 4098 | set(handles.num_ColCode2,'String',num2str(col)) |
---|
| 4099 | if(get(handles.Slider1,'Value') > col)%move also the first slider at the same value if needed |
---|
| 4100 | set(handles.Slider1,'Value',col) |
---|
| 4101 | set(handles.num_ColCode1,'String',num2str(col)) |
---|
| 4102 | end |
---|
| 4103 | set_vec_col_bar(handles) |
---|
| 4104 | update_plot(handles); |
---|
| 4105 | |
---|
| 4106 | %---------------------------------------------------------------- |
---|
| 4107 | % --- Execute on return carriage on the edit box corresponding to slider 1 |
---|
| 4108 | %---------------------------------------------------------------- |
---|
| 4109 | function num_ColCode1_Callback(hObject, eventdata, handles) |
---|
| 4110 | set_vec_col_bar(handles) |
---|
| 4111 | update_plot(handles); |
---|
| 4112 | |
---|
| 4113 | %---------------------------------------------------------------- |
---|
| 4114 | % --- Execute on return carriage on the edit box corresponding to slider 2 |
---|
| 4115 | %---------------------------------------------------------------- |
---|
| 4116 | function num_ColCode2_Callback(hObject, eventdata, handles) |
---|
| 4117 | set_vec_col_bar(handles) |
---|
| 4118 | update_plot(handles); |
---|
[387] | 4119 | %------------------------------------------------------------------------ |
---|
[405] | 4120 | %------------------------------------------------------- |
---|
[387] | 4121 | % --- Executes on button press in CheckFixVecColor. |
---|
[405] | 4122 | %------------------------------------------------------- |
---|
| 4123 | function VecColBar_Callback(hObject, eventdata, handles) |
---|
| 4124 | set_vec_col_bar(handles) |
---|
| 4125 | |
---|
| 4126 | %------------------------------------------------------------------------ |
---|
| 4127 | % --- Executes on button press in CheckFixVecColor. |
---|
[387] | 4128 | function CheckFixVecColor_Callback(hObject, eventdata, handles) |
---|
| 4129 | %------------------------------------------------------------------------ |
---|
[405] | 4130 | if ~get(handles.CheckFixVecColor,'Value') |
---|
[387] | 4131 | update_plot(handles); |
---|
| 4132 | end |
---|
| 4133 | |
---|
| 4134 | %------------------------------------------------------------------------ |
---|
| 4135 | % --- Executes on selection change in num_MaxVec. |
---|
| 4136 | function num_MinVec_Callback(hObject, eventdata, handles) |
---|
| 4137 | %------------------------------------------------------------------------ |
---|
[654] | 4138 | num_MaxVec_Callback(hObject, eventdata, handles) |
---|
[387] | 4139 | |
---|
| 4140 | %------------------------------------------------------------------------ |
---|
| 4141 | % --- Executes on selection change in num_MaxVec. |
---|
| 4142 | function num_MaxVec_Callback(hObject, eventdata, handles) |
---|
| 4143 | %------------------------------------------------------------------------ |
---|
| 4144 | set(handles.CheckFixVecColor,'Value',1) |
---|
| 4145 | CheckFixVecColor_Callback(hObject, eventdata, handles) |
---|
| 4146 | min_val=str2num(get(handles.num_MinVec,'String')); |
---|
| 4147 | max_val=str2num(get(handles.num_MaxVec,'String')); |
---|
| 4148 | slider1=get(handles.Slider1,'Value'); |
---|
| 4149 | slider2=get(handles.Slider2,'Value'); |
---|
| 4150 | colcode1=min_val+(max_val-min_val)*slider1; |
---|
| 4151 | colcode2=min_val+(max_val-min_val)*slider2; |
---|
| 4152 | set(handles.num_ColCode1,'String',num2str(colcode1)) |
---|
| 4153 | set(handles.num_ColCode2,'String',num2str(colcode2)) |
---|
| 4154 | update_plot(handles); |
---|
| 4155 | |
---|
| 4156 | %------------------------------------------------------------------------ |
---|
[405] | 4157 | % --- update the display of color code for vectors (on vecColBar) |
---|
[387] | 4158 | function set_vec_col_bar(handles) |
---|
| 4159 | %------------------------------------------------------------------------ |
---|
| 4160 | %get the image of the color display button 'VecColBar' in pixels |
---|
| 4161 | set(handles.VecColBar,'Unit','pixel'); |
---|
| 4162 | pos_vert=get(handles.VecColBar,'Position'); |
---|
| 4163 | set(handles.VecColBar,'Unit','Normalized'); |
---|
| 4164 | width=ceil(pos_vert(3)); |
---|
| 4165 | height=ceil(pos_vert(4)); |
---|
| 4166 | |
---|
| 4167 | %get slider indications |
---|
[405] | 4168 | list=get(handles.ColorCode,'String'); |
---|
| 4169 | ichoice=get(handles.ColorCode,'Value'); |
---|
| 4170 | colcode.ColorCode=list{ichoice}; |
---|
[387] | 4171 | colcode.MinVec=str2num(get(handles.num_MinVec,'String')); |
---|
| 4172 | colcode.MaxVec=str2num(get(handles.num_MaxVec,'String')); |
---|
[405] | 4173 | test3color=strcmp(colcode.ColorCode,'rgb') || strcmp(colcode.ColorCode,'bgr'); |
---|
[387] | 4174 | if test3color |
---|
| 4175 | colcode.ColCode1=str2num(get(handles.num_ColCode1,'String')); |
---|
| 4176 | colcode.ColCode2=str2num(get(handles.num_ColCode2,'String')); |
---|
| 4177 | end |
---|
| 4178 | vec_C=colcode.MinVec+(colcode.MaxVec-colcode.MinVec)*(0.5:width-0.5)/width;%sample of vec_C values from min to max |
---|
| 4179 | [colorlist,col_vec]=set_col_vec(colcode,vec_C); |
---|
| 4180 | oneheight=ones(1,height); |
---|
| 4181 | A1=colorlist(col_vec,1)*oneheight; |
---|
| 4182 | A2=colorlist(col_vec,2)*oneheight; |
---|
| 4183 | A3=colorlist(col_vec,3)*oneheight; |
---|
| 4184 | A(:,:,1)=A1'; |
---|
| 4185 | A(:,:,2)=A2'; |
---|
| 4186 | A(:,:,3)=A3'; |
---|
| 4187 | set(handles.VecColBar,'Cdata',A) |
---|
| 4188 | |
---|
| 4189 | %------------------------------------------------------------------- |
---|
| 4190 | function update_plot(handles) |
---|
| 4191 | %------------------------------------------------------------------- |
---|
[713] | 4192 | set(handles.REFRESH,'BackgroundColor',[1 1 0]);% display plot activity by yellow color |
---|
[688] | 4193 | drawnow |
---|
[387] | 4194 | UvData=get(handles.uvmat,'UserData'); |
---|
[511] | 4195 | AxeData=UvData.PlotAxes;% retrieve the current plotted data |
---|
[387] | 4196 | PlotParam=read_GUI(handles.uvmat); |
---|
[511] | 4197 | [tild,PlotParamOut]= plot_field(AxeData,handles.PlotAxes,PlotParam); |
---|
[595] | 4198 | errormsg=fill_GUI(PlotParamOut,handles.uvmat); |
---|
[688] | 4199 | if ~isempty(errormsg) |
---|
| 4200 | msgbox_uvmat('ERROR',errormsg) |
---|
| 4201 | return |
---|
[681] | 4202 | end |
---|
[713] | 4203 | set(handles.REFRESH,'BackgroundColor',[1 0 0]); |
---|
[387] | 4204 | |
---|
[402] | 4205 | %------------------------------------------------------------------------ |
---|
| 4206 | %------------------------------------------------------------------------ |
---|
| 4207 | % SELECTION AND EDITION OF PROJECTION OBJECTS |
---|
| 4208 | %------------------------------------------------------------------------ |
---|
| 4209 | %------------------------------------------------------------------------ |
---|
[387] | 4210 | |
---|
[410] | 4211 | % --- Executes on selection change in ListObject_1. |
---|
| 4212 | function ListObject_1_Callback(hObject, eventdata, handles) |
---|
[432] | 4213 | list_str=get(handles.ListObject,'String'); |
---|
[410] | 4214 | UvData=get(handles.uvmat,'UserData'); |
---|
[622] | 4215 | ObjectData=UvData.ProjObject{get(handles.ListObject_1,'Value')}; |
---|
[410] | 4216 | |
---|
| 4217 | %% update the projection plot on uvmat |
---|
[432] | 4218 | ProjData= proj_field(UvData.Field,ObjectData);%project the current input field on object ObjectData |
---|
[511] | 4219 | plot_field(ProjData,handles.PlotAxes,read_GUI(handles.uvmat));% plot the projected field; |
---|
[432] | 4220 | %replot all the objects within the new projected field |
---|
| 4221 | for IndexObj=1:numel(list_str) |
---|
[622] | 4222 | hobject=UvData.ProjObject{IndexObj}.DisplayHandle.uvmat; |
---|
[432] | 4223 | if isempty(hobject) || ~ishandle(hobject) |
---|
[515] | 4224 | hobject=handles.PlotAxes; |
---|
[432] | 4225 | end |
---|
| 4226 | if isequal(IndexObj,get(handles.ListObject,'Value')) |
---|
| 4227 | objectcolor='m'; %paint in magenta the currently selected object in ListObject |
---|
| 4228 | else |
---|
| 4229 | objectcolor='b'; |
---|
| 4230 | end |
---|
[622] | 4231 | UvData.ProjObject{IndexObj}.DisplayHandle.uvmat=plot_object(UvData.ProjObject{IndexObj},ObjectData,hobject,objectcolor);%draw the object in uvmat |
---|
[432] | 4232 | end |
---|
| 4233 | set(handles.uvmat,'UserData',UvData) |
---|
[410] | 4234 | |
---|
| 4235 | %% display the object parameters if the GUI set_object is already opened |
---|
[650] | 4236 | if ~get(handles.CheckViewObject,'Value') |
---|
[410] | 4237 | ZBounds=0; % default |
---|
| 4238 | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
---|
| 4239 | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
---|
| 4240 | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
---|
| 4241 | end |
---|
[425] | 4242 | ObjectData.Name=list_str{get(handles.ListObject_1,'Value')}; |
---|
[410] | 4243 | set_object(ObjectData,[],ZBounds); |
---|
[650] | 4244 | set(handles.CheckViewObject,'Value',1)% show that the selected object in ListObject_1 is currently visualised |
---|
[410] | 4245 | end |
---|
[432] | 4246 | |
---|
[410] | 4247 | % desactivate the edit object mode |
---|
[650] | 4248 | set(handles.CheckEditObject,'Value',0) |
---|
| 4249 | % set(handles.CheckEditObject,'BackgroundColor',[0.7,0.7,0.7]) |
---|
[410] | 4250 | |
---|
[387] | 4251 | %------------------------------------------------------------------------ |
---|
| 4252 | % --- Executes on selection change in ListObject. |
---|
| 4253 | function ListObject_Callback(hObject, eventdata, handles) |
---|
| 4254 | %------------------------------------------------------------------------ |
---|
| 4255 | list_str=get(handles.ListObject,'String'); |
---|
| 4256 | IndexObj=get(handles.ListObject,'Value');%present object selection |
---|
[402] | 4257 | UvData=get(handles.uvmat,'UserData'); |
---|
[622] | 4258 | ObjectData=UvData.ProjObject{IndexObj}; |
---|
[402] | 4259 | ZBounds=0; % default |
---|
| 4260 | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
---|
| 4261 | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
---|
| 4262 | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
---|
| 4263 | end |
---|
[625] | 4264 | |
---|
| 4265 | %% show object features if view_object isselected |
---|
[650] | 4266 | if get(handles.CheckViewObject,'value') |
---|
[402] | 4267 | set_object(ObjectData,[],ZBounds); |
---|
| 4268 | end |
---|
[429] | 4269 | |
---|
[625] | 4270 | %% The object is displayed in set_object if this GUI is already opened |
---|
| 4271 | % |
---|
| 4272 | % hset_object=findobj(allchild(0),'tag','set_object'); |
---|
| 4273 | % if ~isempty(hset_object) |
---|
| 4274 | % |
---|
| 4275 | % ObjectData.Name=list_str{IndexObj}; |
---|
| 4276 | % set_object(ObjectData,[],ZBounds); |
---|
[650] | 4277 | % set(handles.CheckViewField,'Value',1)% show that the selected object in ListObject is currently visualised |
---|
[625] | 4278 | % end |
---|
| 4279 | |
---|
| 4280 | %% desactivate the edit object mode for security |
---|
[650] | 4281 | set(handles.CheckEditObject,'Value',0) |
---|
[625] | 4282 | |
---|
[650] | 4283 | % set(handles.CheckEditObject,'BackgroundColor',[0.7,0.7,0.7]) |
---|
[402] | 4284 | |
---|
[429] | 4285 | %% update the plot on view_field if view_field is already openened |
---|
| 4286 | hview_field=findobj(allchild(0),'tag','view_field'); |
---|
| 4287 | if isempty(hview_field) |
---|
[511] | 4288 | hhview_field.PlotAxes=[]; |
---|
[429] | 4289 | else |
---|
| 4290 | Data=get(hview_field,'UserData'); |
---|
| 4291 | hhview_field=guidata(hview_field); |
---|
| 4292 | ProjData= proj_field(UvData.Field,ObjectData);%project the current interface field on ObjectData |
---|
[595] | 4293 | [PlotType,PlotParam]=plot_field(ProjData,hhview_field.PlotAxes,read_GUI(hview_field));%read plotting parameters on the uvmat interface |
---|
| 4294 | |
---|
| 4295 | %write_plot_param(hhview_field,PlotParam); %update the display of plotting parameters for the current object |
---|
[429] | 4296 | haxes=findobj(hview_field,'tag','axes3'); |
---|
| 4297 | pos=get(hview_field,'Position'); |
---|
| 4298 | if strcmp(get(haxes,'Visible'),'off')%sempty(PlotParam.Coordinates)% case of no plot display (pure text table) |
---|
| 4299 | h_TableDisplay=findobj(hview_field,'tag','TableDisplay'); |
---|
| 4300 | pos_table=get(h_TableDisplay,'Position'); |
---|
| 4301 | set(hview_field,'Position',[pos(1)+pos(3)-pos_table(3) pos(2)+pos(4)-pos_table(4) pos_table(3) pos_table(4)]) |
---|
| 4302 | drawnow% needed to change position before the next command |
---|
| 4303 | set(hview_field,'UserData',Data);% restore the previously stored GUI position after GUI resizing |
---|
| 4304 | else |
---|
[644] | 4305 | % set(hview_field,'Position',Data.GUISize)% return to the previously stored GUI position and size |
---|
[387] | 4306 | end |
---|
| 4307 | end |
---|
| 4308 | |
---|
[402] | 4309 | %% update the color of the graphic object representation: the selected object in magenta, others in blue |
---|
[622] | 4310 | update_object_color(handles.PlotAxes,hhview_field.PlotAxes,UvData.ProjObject{IndexObj}.DisplayHandle.uvmat) |
---|
[387] | 4311 | |
---|
| 4312 | %------------------------------------------------------------------------ |
---|
[402] | 4313 | %--- update the color representation of objects (indicating the selected ones) |
---|
| 4314 | function update_object_color(axes_uvmat,axes_view_field,DisplayHandle) |
---|
[387] | 4315 | %------------------------------------------------------------------------ |
---|
[402] | 4316 | if isempty(axes_view_field)% case with no view_field plot |
---|
| 4317 | hother=[findobj(axes_uvmat,'Tag','proj_object');findobj(axes_uvmat,'Tag','DeformPoint')];%find all the proj object and deform point representations |
---|
[387] | 4318 | else |
---|
[402] | 4319 | hother=[findobj(axes_uvmat,'Tag','proj_object') ;findobj(axes_view_field,'Tag','proj_object');... %find all the proj object representations |
---|
| 4320 | findobj(axes_uvmat,'Tag','DeformPoint'); findobj(axes_view_field,'Tag','DeformPoint')];%find all the deform point representations |
---|
[387] | 4321 | end |
---|
| 4322 | for iobj=1:length(hother) |
---|
| 4323 | if isequal(get(hother(iobj),'Type'),'rectangle')||isequal(get(hother(iobj),'Type'),'patch') |
---|
| 4324 | set(hother(iobj),'EdgeColor','b') |
---|
| 4325 | if isequal(get(hother(iobj),'FaceColor'),'m') |
---|
| 4326 | set(hother(iobj),'FaceColor','b') |
---|
| 4327 | end |
---|
| 4328 | elseif isequal(get(hother(iobj),'Type'),'image') |
---|
| 4329 | Acolor=get(hother(iobj),'CData'); |
---|
| 4330 | Acolor(:,:,1)=zeros(size(Acolor,1),size(Acolor,2)); |
---|
| 4331 | set(hother(iobj),'CData',Acolor); |
---|
| 4332 | else |
---|
| 4333 | set(hother(iobj),'Color','b') |
---|
| 4334 | end |
---|
| 4335 | set(hother(iobj),'Selected','off') |
---|
| 4336 | end |
---|
[432] | 4337 | if ishandle(DisplayHandle) |
---|
[402] | 4338 | linetype=get(DisplayHandle,'Type'); |
---|
| 4339 | if isequal(linetype,'line') |
---|
| 4340 | set(DisplayHandle,'Color','m'); %set the selected object to magenta color |
---|
| 4341 | elseif isequal(linetype,'rectangle') |
---|
| 4342 | set(DisplayHandle,'EdgeColor','m'); %set the selected object to magenta color |
---|
| 4343 | elseif isequal(linetype,'patch') |
---|
| 4344 | set(DisplayHandle,'FaceColor','m'); %set the selected object to magenta color |
---|
| 4345 | end |
---|
| 4346 | SubObjectData=get(DisplayHandle,'UserData'); |
---|
| 4347 | if isfield(SubObjectData,'SubObject') & ishandle(SubObjectData.SubObject) |
---|
| 4348 | for iobj=1:length(SubObjectData.SubObject) |
---|
| 4349 | hsub=SubObjectData.SubObject(iobj); |
---|
| 4350 | if isequal(get(hsub,'Type'),'rectangle') |
---|
| 4351 | set(hsub,'EdgeColor','m'); %set the selected object to magenta color |
---|
| 4352 | elseif isequal(get(hsub,'Type'),'image') |
---|
| 4353 | Acolor=get(hsub,'CData'); |
---|
| 4354 | Acolor(:,:,1)=Acolor(:,:,3); |
---|
| 4355 | set(hsub,'CData',Acolor); |
---|
| 4356 | else |
---|
| 4357 | set(hsub,'Color','m') |
---|
| 4358 | end |
---|
[387] | 4359 | end |
---|
| 4360 | end |
---|
[402] | 4361 | if isfield(SubObjectData,'DeformPoint') & ishandle(SubObjectData.DeformPoint) |
---|
| 4362 | set(SubObjectData.DeformPoint,'Color','m') |
---|
| 4363 | end |
---|
[387] | 4364 | end |
---|
[402] | 4365 | |
---|
[427] | 4366 | %------------------------------------------------------------------- |
---|
[650] | 4367 | % --- Executes on selection change in CheckEditObject. |
---|
| 4368 | function CheckEditObject_Callback(hObject, eventdata, handles) |
---|
[427] | 4369 | %------------------------------------------------------------------- |
---|
| 4370 | hset_object=findobj(allchild(0),'Tag','set_object'); |
---|
[650] | 4371 | if get(handles.CheckEditObject,'Value') |
---|
[427] | 4372 | %suppress the other options |
---|
[701] | 4373 | set(handles.MenuObject,'checked','off') |
---|
[427] | 4374 | set(handles.CheckZoom,'Value',0) |
---|
| 4375 | CheckZoom_Callback(hObject, eventdata, handles) |
---|
| 4376 | hgeometry_calib=findobj(allchild(0),'tag','geometry_calib'); |
---|
| 4377 | if ishandle(hgeometry_calib) |
---|
| 4378 | hhgeometry_calib=guidata(hgeometry_calib); |
---|
[660] | 4379 | set(hhgeometry_calib.CheckEnableMouse,'Value',0)% desactivate mouse action in geometry_calib |
---|
[682] | 4380 | set(hhgeometry_calib.CheckEnableMouse,'BackgroundColor',[0.7 0.7 0.7]) |
---|
[427] | 4381 | end |
---|
[650] | 4382 | set(handles.CheckViewObject,'value',1) |
---|
| 4383 | CheckViewObject_Callback(hObject, eventdata, handles) |
---|
[625] | 4384 | else % desactivate object edit mode |
---|
[427] | 4385 | if ~isempty(hset_object)% open the |
---|
[625] | 4386 | set(get(hset_object,'children'),'Enable','off') |
---|
| 4387 | hSAVE=findobj(hset_object,'Tag','SAVE'); |
---|
| 4388 | set(hSAVE,'Enable','on') |
---|
[427] | 4389 | end |
---|
| 4390 | end |
---|
| 4391 | |
---|
| 4392 | |
---|
[402] | 4393 | %------------------------------------------------------------------------ |
---|
[650] | 4394 | % --- Executes on button press in CheckViewObject. |
---|
| 4395 | function CheckViewObject_Callback(hObject, eventdata, handles) |
---|
[410] | 4396 | %------------------------------------------------------------------------ |
---|
[650] | 4397 | check_view=get(handles.CheckViewObject,'Value'); |
---|
[410] | 4398 | |
---|
| 4399 | if check_view %activate set_object |
---|
[424] | 4400 | IndexObj=get(handles.ListObject,'Value'); |
---|
| 4401 | list_object=get(handles.ListObject,'String'); |
---|
[410] | 4402 | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
---|
[622] | 4403 | UvData.ProjObject{IndexObj}.Name=list_object{IndexObj}; |
---|
| 4404 | if numel(UvData.ProjObject)<IndexObj;% error in UvData |
---|
[410] | 4405 | msgbox_uvmat('ERROR','invalid object list') |
---|
| 4406 | return |
---|
| 4407 | end |
---|
| 4408 | ZBounds=0; % default |
---|
| 4409 | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
---|
| 4410 | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
---|
| 4411 | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
---|
| 4412 | end |
---|
[622] | 4413 | data=UvData.ProjObject{IndexObj}; |
---|
[410] | 4414 | if ~isfield(data,'Type')% default plane |
---|
| 4415 | data.Type='plane'; |
---|
| 4416 | end |
---|
| 4417 | hset_object=set_object(data,[],ZBounds); |
---|
| 4418 | hhset_object=guidata(hset_object); |
---|
[650] | 4419 | if get(handles.CheckEditObject,'Value')% edit mode |
---|
[625] | 4420 | set(get(hset_object,'children'),'Enable','on') |
---|
[410] | 4421 | else |
---|
[625] | 4422 | set(get(hset_object,'children'),'Enable','off')% deactivate the GUI except SAVE |
---|
[427] | 4423 | set(hhset_object.SAVE,'Enable','on') |
---|
[410] | 4424 | end |
---|
| 4425 | else |
---|
| 4426 | hset_object=findobj(allchild(0),'tag','set_object'); |
---|
| 4427 | if ~isempty(hset_object) |
---|
| 4428 | delete(hset_object)% delete existing version of set_object |
---|
| 4429 | end |
---|
| 4430 | end |
---|
| 4431 | |
---|
[424] | 4432 | |
---|
[410] | 4433 | %------------------------------------------------------------------------ |
---|
[650] | 4434 | % --- Executes on button press in CheckViewField. |
---|
| 4435 | function CheckViewField_Callback(hObject, eventdata, handles) |
---|
[402] | 4436 | %------------------------------------------------------------------------ |
---|
[650] | 4437 | check_view=get(handles.CheckViewField,'Value'); |
---|
[387] | 4438 | |
---|
[410] | 4439 | if check_view |
---|
| 4440 | IndexObj=get(handles.ListObject,'Value'); |
---|
| 4441 | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
---|
[622] | 4442 | if numel(UvData.ProjObject)<IndexObj(end);% error in UvData |
---|
[410] | 4443 | msgbox_uvmat('ERROR','invalid object list') |
---|
| 4444 | return |
---|
| 4445 | end |
---|
| 4446 | ZBounds=0; % default |
---|
| 4447 | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
---|
| 4448 | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
---|
| 4449 | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
---|
| 4450 | end |
---|
| 4451 | set(handles.ListObject,'Value',IndexObj);%restore ListObject selection after set_object deletion |
---|
[622] | 4452 | if ~isfield(UvData.ProjObject{IndexObj(1)},'Type')% default plane |
---|
| 4453 | UvData.ProjObject{IndexObj(1)}.Type='plane'; |
---|
[410] | 4454 | end |
---|
| 4455 | list_object=get(handles.ListObject,'String'); |
---|
[622] | 4456 | UvData.ProjObject{IndexObj(end)}.Name=list_object{IndexObj(end)}; |
---|
[410] | 4457 | |
---|
[429] | 4458 | %% show the projection of the selected object on view_field |
---|
[622] | 4459 | ProjData= proj_field(UvData.Field,UvData.ProjObject{IndexObj});%project the current field on ObjectData |
---|
[402] | 4460 | hview_field=findobj(allchild(0),'tag','view_field'); |
---|
| 4461 | if isempty(hview_field) |
---|
| 4462 | hview_field=view_field; |
---|
| 4463 | end |
---|
[429] | 4464 | hhview_field=guidata(hview_field); |
---|
[511] | 4465 | [PlotType,PlotParam]=plot_field(ProjData,hhview_field.PlotAxes,read_GUI(hview_field));%read plotting parameters on the GUI view_field); |
---|
[595] | 4466 | errormsg=fill_GUI(PlotParam,hview_field); |
---|
[609] | 4467 | for list={'Scalar','Vectors'} |
---|
| 4468 | if ~isfield(PlotParam,list{1}) |
---|
| 4469 | set(hhview_field.(list{1}),'Visible','off') |
---|
| 4470 | end |
---|
| 4471 | end |
---|
[595] | 4472 | %write_plot_param(hhview_field,PlotParam); %update the display of plotting parameters for the current object |
---|
[429] | 4473 | haxes=findobj(hview_field,'tag','axes3'); |
---|
| 4474 | pos=get(hview_field,'Position'); |
---|
| 4475 | if strcmp(get(haxes,'Visible'),'off')%sempty(PlotParam.Coordinates)% case of no plot display (pure text table) |
---|
| 4476 | h_TableDisplay=findobj(hview_field,'tag','TableDisplay'); |
---|
| 4477 | pos_table=get(h_TableDisplay,'Position'); |
---|
| 4478 | set(hview_field,'Position',[pos(1)+pos(3)-pos_table(3) pos(2)+pos(4)-pos_table(4) pos_table(3) pos_table(4)]) |
---|
| 4479 | else |
---|
| 4480 | Data=get(hview_field,'UserData'); |
---|
[644] | 4481 | % set(hview_field,'Position',Data.GUISize)% restore the size of view_field for plots |
---|
[429] | 4482 | end |
---|
[410] | 4483 | else |
---|
[424] | 4484 | hview_field=findobj(allchild(0),'tag','view_field'); |
---|
| 4485 | if ~isempty(hview_field) |
---|
| 4486 | delete(hview_field)% delete existing version of set_object |
---|
[410] | 4487 | end |
---|
[402] | 4488 | end |
---|
| 4489 | |
---|
[424] | 4490 | |
---|
[402] | 4491 | %------------------------------------------------------------------------ |
---|
[650] | 4492 | % --- Executes on button press in DeleteObject. |
---|
[622] | 4493 | %------------------------------------------------------------------------ |
---|
[650] | 4494 | function DeleteObject_Callback(hObject, eventdata, handles) |
---|
[622] | 4495 | |
---|
[499] | 4496 | IndexObj=get(handles.ListObject,'Value');%projection object selected for view_field |
---|
| 4497 | IndexObj_1=get(handles.ListObject_1,'Value');%projection object selected for uvmat plot |
---|
| 4498 | if IndexObj>1 && ~isequal(IndexObj,IndexObj_1) % do not delete the object used for the uvmat plot |
---|
[410] | 4499 | delete_object(IndexObj) |
---|
[402] | 4500 | end |
---|
| 4501 | |
---|
[650] | 4502 | %'DeleteObject': delete a projection object, defined by its index in the Uvmat list or by its graphic handle |
---|
[402] | 4503 | %------------------------------------------------------------------------ |
---|
[650] | 4504 | % function DeleteObject(hObject) |
---|
[622] | 4505 | % |
---|
| 4506 | % INPUT: |
---|
| 4507 | % hObject: object index (if integer) or handle of the graphic object. If |
---|
| 4508 | % hObject is a subobject, the parent object is detected and deleted. |
---|
| 4509 | |
---|
| 4510 | function delete_object(IndexObj) |
---|
| 4511 | |
---|
| 4512 | huvmat=findobj('tag','uvmat');%handles of the uvmat interface |
---|
| 4513 | UvData=get(huvmat,'UserData'); |
---|
| 4514 | hlist_object=findobj(huvmat,'Tag','ListObject');%handles of the object list in the uvmat interface |
---|
| 4515 | list_str=get(hlist_object,'String');%objet list |
---|
[648] | 4516 | if ~isempty(UvData) && isfield(UvData, 'ProjObject') && length(UvData.ProjObject)>=IndexObj |
---|
| 4517 | if isfield(UvData.ProjObject{IndexObj},'DisplayHandle') && isfield(UvData.ProjObject{IndexObj}.DisplayHandle,'uvmat') |
---|
[681] | 4518 | hdisplay=UvData.ProjObject{IndexObj}.DisplayHandle.uvmat;%handle of the object graphic representation in uvmat |
---|
[648] | 4519 | for iview=1:length(hdisplay) |
---|
| 4520 | if ishandle(hdisplay(iview)) && ~isequal(hdisplay(iview),0) |
---|
| 4521 | ObjectData=get(hdisplay(iview),'UserData'); |
---|
[701] | 4522 | if isfield(ObjectData,'SubObject') && ~isempty(ObjectData.SubObject) |
---|
| 4523 | delete(ObjectData.SubObject(ishandle(ObjectData.SubObject)));% delete the graphic 'sub-objects (e.g. projection bounds) |
---|
[648] | 4524 | end |
---|
[701] | 4525 | if isfield(ObjectData,'DeformPoint')&& ~isempty(ObjectData.DeformPoint) |
---|
| 4526 | delete(ObjectData.DeformPoint(ishandle(ObjectData.DeformPoint)));% delete the graphic deformation points |
---|
| 4527 | delete(hdisplay(iview))% delete the main graphic representation of the object |
---|
| 4528 | end |
---|
[648] | 4529 | end |
---|
| 4530 | ishandle(hdisplay(iview)) |
---|
| 4531 | end |
---|
| 4532 | for iobj=IndexObj+1:length(UvData.ProjObject) |
---|
| 4533 | hdisplay=UvData.ProjObject{iobj}.DisplayHandle.uvmat; |
---|
[622] | 4534 | for iview=1:length(hdisplay) |
---|
| 4535 | if ishandle(hdisplay(iview)) && ~isequal(hdisplay(iview),0) |
---|
[648] | 4536 | PlotData=get(hdisplay(iview),'UserData'); |
---|
| 4537 | PlotData.IndexObj=iobj-1; |
---|
| 4538 | set(hdisplay(iview),'UserData',PlotData); |
---|
[622] | 4539 | end |
---|
| 4540 | end |
---|
| 4541 | end |
---|
| 4542 | end |
---|
[648] | 4543 | UvData.ProjObject(IndexObj)=[]; |
---|
| 4544 | if ~isempty(list_str) |
---|
| 4545 | list_str(IndexObj)=[]; |
---|
| 4546 | end |
---|
| 4547 | end |
---|
[622] | 4548 | set(huvmat,'UserData',UvData); |
---|
| 4549 | set(hlist_object,'String',list_str) |
---|
| 4550 | set(hlist_object,'Value',length(list_str)) |
---|
| 4551 | hlist_object_1=findobj(huvmat,'Tag','ListObject_1');%handles of the first object list in the uvmat interface |
---|
| 4552 | old_index=get(hlist_object_1,'Value'); |
---|
| 4553 | set(hlist_object_1,'String',list_str) |
---|
| 4554 | if IndexObj<=old_index |
---|
| 4555 | set(hlist_object_1,'Value',old_index-1) |
---|
| 4556 | end |
---|
| 4557 | |
---|
[402] | 4558 | %------------------------------------------------------------------------ |
---|
[622] | 4559 | %------------------------------------------------------------------------ |
---|
[402] | 4560 | % II - TOOLS FROM THE UPPER MENU BAR |
---|
| 4561 | %------------------------------------------------------------------------ |
---|
| 4562 | %------------------------------------------------------------------------ |
---|
| 4563 | |
---|
| 4564 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 4565 | % Export Menu Callbacks |
---|
| 4566 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 4567 | %------------------------------------------------------------------------ |
---|
[387] | 4568 | % --- Executes on button press in Menu/Export/field in workspace. |
---|
| 4569 | function MenuExportField_Callback(hObject, eventdata, handles) |
---|
[402] | 4570 | %------------------------------------------------------------------------ |
---|
[387] | 4571 | global Data_uvmat |
---|
| 4572 | Data_uvmat=get(handles.uvmat,'UserData'); |
---|
| 4573 | evalin('base','global Data_uvmat')%make CurData global in the workspace |
---|
| 4574 | display('current field :') |
---|
| 4575 | evalin('base','Data_uvmat') %display CurData in the workspace |
---|
| 4576 | commandwindow; %brings the Matlab command window to the front |
---|
| 4577 | |
---|
[402] | 4578 | %------------------------------------------------------------------------ |
---|
[387] | 4579 | % --- Executes on button press in Menu/Export/extract figure. |
---|
[402] | 4580 | function MenuExportFigure_Callback(hObject, eventdata, handles) |
---|
| 4581 | %------------------------------------------------------------------------ |
---|
[387] | 4582 | hfig=figure; |
---|
[511] | 4583 | copyobj(handles.PlotAxes,hfig); |
---|
[713] | 4584 | h=findobj(handles.PlotAxes,'tag','ima'); %look for image in the plot |
---|
| 4585 | if ~isempty(h) |
---|
[717] | 4586 | map=colormap(handles.PlotAxes); |
---|
| 4587 | colormap(map);%transmit the current colormap to the zoom fig |
---|
| 4588 | colorbar |
---|
[713] | 4589 | end |
---|
[387] | 4590 | |
---|
[508] | 4591 | % -------------------------------------------------------------------- |
---|
| 4592 | function MenuExportAxis_Callback(hObject, eventdata, handles) |
---|
[581] | 4593 | ListFig=findobj(allchild(0),'Type','figure'); |
---|
| 4594 | nb_option=0; |
---|
| 4595 | menu={}; |
---|
| 4596 | for ilist=1:numel(ListFig) |
---|
| 4597 | FigName=get(ListFig(ilist),'name'); |
---|
| 4598 | if isempty(FigName) |
---|
| 4599 | FigName=['figure ' num2str(ListFig(ilist))]; |
---|
| 4600 | end |
---|
| 4601 | if ~strcmp(FigName,'uvmat') |
---|
| 4602 | ListAxes=findobj(ListFig(ilist),'Type','axes'); |
---|
| 4603 | ListTags=get(ListAxes,'Tag'); |
---|
| 4604 | if ~isempty(ListTags) && ~isempty(find(~strcmp('Colorbar',ListTags), 1)) |
---|
| 4605 | ListAxes=ListAxes(~strcmp('Colorbar',ListTags)); |
---|
| 4606 | if numel(ListAxes)==1 |
---|
| 4607 | nb_option=nb_option+1; |
---|
| 4608 | menu{nb_option}=FigName ; |
---|
| 4609 | AxesHandle(nb_option)=ListAxes; |
---|
| 4610 | else |
---|
| 4611 | nb_axis=0; |
---|
| 4612 | for iaxes=1:numel(ListAxes) |
---|
| 4613 | nb_axis=nb_axis+1; |
---|
| 4614 | nb_option=nb_option+1; |
---|
| 4615 | menu{nb_option}=[FigName '_' num2str(nb_axis)]; |
---|
| 4616 | AxesHandle(nb_option)=ListAxes(nb_axis); |
---|
| 4617 | end |
---|
| 4618 | end |
---|
| 4619 | end |
---|
| 4620 | end |
---|
[508] | 4621 | end |
---|
[581] | 4622 | if isempty(menu) |
---|
| 4623 | answer=msgbox_uvmat('INPUT_Y-N','no existing plotting axes available, create new figure?'); |
---|
| 4624 | if strcmp(answer,'Yes') |
---|
| 4625 | hfig=figure; |
---|
| 4626 | copyobj(handles.PlotAxes,hfig); |
---|
| 4627 | else |
---|
| 4628 | return |
---|
| 4629 | end |
---|
| 4630 | map=colormap(handles.PlotAxes); |
---|
| 4631 | colormap(map);%transmit the current colormap to the zoom fig |
---|
| 4632 | colorbar |
---|
| 4633 | else |
---|
| 4634 | answer=msgbox_uvmat('INPUT_MENU','select a figure/axis on which the current uvmat plot will be exported',menu); |
---|
| 4635 | if isempty(answer) |
---|
| 4636 | return |
---|
| 4637 | else |
---|
| 4638 | axes(AxesHandle(answer)) |
---|
| 4639 | hold on |
---|
| 4640 | hchild=get(handles.PlotAxes,'children'); |
---|
| 4641 | copyobj(hchild,gca); |
---|
| 4642 | end |
---|
| 4643 | end |
---|
[387] | 4644 | |
---|
[581] | 4645 | |
---|
[387] | 4646 | %------------------------------------------------------------------------ |
---|
| 4647 | % -------------------------------------------------------------------- |
---|
| 4648 | function MenuExportMovie_Callback(hObject, eventdata, handles) |
---|
| 4649 | % -------------------------------------------------------------------- |
---|
| 4650 | set(handles.MenuExportMovie,'BusyAction','queue')% activate the button |
---|
[713] | 4651 | huvmat=get(handles.InputFileREFRESH,'parent'); |
---|
[387] | 4652 | UvData=get(huvmat,'UserData'); |
---|
| 4653 | %[xx,xx,FileBase]=read_file_boxes(handles); |
---|
[515] | 4654 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
[387] | 4655 | FileBase=fullfile(RootPath,RootFile); |
---|
| 4656 | %read the current input file name |
---|
| 4657 | prompt = {'movie file name';'frames per second';'frame resolution (*[512x384] pixels)';'axis position relative to the frame';'total frame number (starting from the current uvmat display)'}; |
---|
| 4658 | dlg_title = 'select properties of the output avi movie'; |
---|
| 4659 | num_lines= 1; |
---|
| 4660 | def = {[FileBase '_out.avi'];'10';'1';'[0.03 0.05 0.95 0.92]';'10'}; |
---|
| 4661 | answer = inputdlg(prompt,dlg_title,num_lines,def,'on'); |
---|
| 4662 | aviname=answer{1}; |
---|
| 4663 | fps=str2double(answer{2}); |
---|
| 4664 | % check for existing file with output name aviname |
---|
| 4665 | if exist(aviname,'file') |
---|
| 4666 | backup=aviname; |
---|
| 4667 | testexist=2; |
---|
| 4668 | while testexist==2 |
---|
| 4669 | backup=[backup '~']; |
---|
| 4670 | testexist=exist(backup,'file'); |
---|
| 4671 | end |
---|
| 4672 | [success,message]=copyfile(aviname,backup);%make backup of the existing file |
---|
| 4673 | if isequal(success,1) |
---|
| 4674 | delete(aviname)%delete existing file |
---|
| 4675 | else |
---|
| 4676 | msgbox_uvmat('ERROR',message) |
---|
| 4677 | return |
---|
| 4678 | end |
---|
| 4679 | end |
---|
| 4680 | %create avi open |
---|
| 4681 | aviobj=avifile(aviname,'Compression','None','fps',fps); |
---|
| 4682 | |
---|
| 4683 | %display first view for tests |
---|
| 4684 | newfig=figure; |
---|
[511] | 4685 | newaxes=copyobj(handles.PlotAxes,newfig);%new plotting axes in the new figure |
---|
[387] | 4686 | set(newaxes,'Tag','movieaxes') |
---|
| 4687 | nbpix=[512 384]*str2double(answer{3}); |
---|
| 4688 | set(gcf,'Position',[1 1 nbpix])% resolution XVGA |
---|
| 4689 | set(newaxes,'Position',eval(answer{4})); |
---|
[511] | 4690 | map=colormap(handles.PlotAxes); |
---|
[387] | 4691 | colormap(map);%transmit the current colormap to the zoom fig |
---|
| 4692 | msgbox_uvmat('INPUT_Y-N',{['adjust figure ' num2str(newfig) ' with its matlab edit menu '] ;... |
---|
| 4693 | ['then press OK to get the avi movie as a copy of figure ' num2str(newfig) ' display']}); |
---|
| 4694 | UvData.plotaxes=newaxes;% the axis in the new figure becomes the current main plotting axes |
---|
| 4695 | set(huvmat,'UserData',UvData); |
---|
[511] | 4696 | increment=str2num(get(handles.num_IndexIncrement,'String')); %get the field increment d |
---|
[387] | 4697 | set(handles.STOP,'Visible','on') |
---|
| 4698 | set(handles.speed,'Visible','on') |
---|
| 4699 | set(handles.speed_txt,'Visible','on') |
---|
| 4700 | set(handles.Movie,'BusyAction','queue') |
---|
| 4701 | |
---|
| 4702 | %imin=str2double(get(handles.i1,'String')); |
---|
| 4703 | imax=str2double(answer{5}); |
---|
| 4704 | % if isfield(UvData,'Time') |
---|
| 4705 | htitle=get(newaxes,'Title'); |
---|
| 4706 | xlim=get(newaxes,'XLim'); |
---|
| 4707 | ylim=get(newaxes,'YLim'); |
---|
| 4708 | set(htitle,'Position',[xlim(2)+0.07*(xlim(2)-xlim(1)) ylim(2)-0.05*(ylim(2)-ylim(1)) 0]) |
---|
[648] | 4709 | time_str=get(handles.TimeValue,'String'); |
---|
[387] | 4710 | set(htitle,'String',['t=' time_str]) |
---|
| 4711 | set(handles.speed,'Value',1) |
---|
| 4712 | for i=1:imax |
---|
| 4713 | if get(handles.speed,'Value')~=0 && isequal(get(handles.MenuExportMovie,'BusyAction'),'queue') % enable STOP command |
---|
| 4714 | runpm(hObject,eventdata,handles,increment)% run plus |
---|
| 4715 | drawnow |
---|
[648] | 4716 | time_str=get(handles.TimeValue,'String'); |
---|
[387] | 4717 | if ishandle(htitle) |
---|
| 4718 | set(htitle,'String',['t=' time_str]) |
---|
| 4719 | end |
---|
| 4720 | mov=getframe(newfig); |
---|
| 4721 | aviobj=addframe(aviobj,mov); |
---|
| 4722 | end |
---|
| 4723 | end |
---|
| 4724 | aviobj=close(aviobj); |
---|
| 4725 | UvData=rmfield(UvData,'plotaxes'); |
---|
| 4726 | set(huvmat,'UserData',UvData); |
---|
| 4727 | msgbox_uvmat('CONFIRMATION',{['movie ' aviname ' created '];['with ' num2str(imax) ' frames']}) |
---|
| 4728 | |
---|
[402] | 4729 | |
---|
| 4730 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 4731 | % Projection Objects Menu Callbacks |
---|
| 4732 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 4733 | |
---|
| 4734 | % ----------------------------------------------------------------------- |
---|
| 4735 | function Menupoints_Callback(hObject, eventdata, handles) |
---|
[387] | 4736 | %------------------------------------------------------------------------ |
---|
[402] | 4737 | data.Type='points'; |
---|
| 4738 | data.ProjMode='projection';%default |
---|
[410] | 4739 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4740 | create_object(data,handles) |
---|
| 4741 | |
---|
| 4742 | % ----------------------------------------------------------------------- |
---|
[650] | 4743 | % --- Callback of the Menu command line |
---|
| 4744 | %------------------------------------------------------------------------ |
---|
[402] | 4745 | function Menuline_Callback(hObject, eventdata, handles) |
---|
| 4746 | %------------------------------------------------------------------------ |
---|
| 4747 | data.Type='line'; |
---|
| 4748 | data.ProjMode='projection';%default |
---|
[410] | 4749 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4750 | create_object(data,handles) |
---|
| 4751 | |
---|
[650] | 4752 | % ----------------------------------------------------------------------- |
---|
| 4753 | % --- Callback of the Menu command line_x |
---|
[402] | 4754 | %------------------------------------------------------------------------ |
---|
[650] | 4755 | function Menuline_x_Callback(hObject, eventdata, handles) |
---|
[674] | 4756 | |
---|
[650] | 4757 | data.Type='line_x'; |
---|
| 4758 | data.ProjMode='projection';%default |
---|
| 4759 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
| 4760 | create_object(data,handles) |
---|
| 4761 | |
---|
| 4762 | % ----------------------------------------------------------------------- |
---|
| 4763 | % --- Callback of the Menu command line_y |
---|
| 4764 | % ----------------------------------------------------------------------- |
---|
| 4765 | function Menuline_y_Callback(hObject, eventdata, handles) |
---|
[674] | 4766 | |
---|
[650] | 4767 | data.Type='line_y'; |
---|
| 4768 | data.ProjMode='projection';%default |
---|
| 4769 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
| 4770 | create_object(data,handles) |
---|
| 4771 | |
---|
| 4772 | %------------------------------------------------------------------------ |
---|
[402] | 4773 | function Menupolyline_Callback(hObject, eventdata, handles) |
---|
| 4774 | %------------------------------------------------------------------------ |
---|
| 4775 | data.Type='polyline'; |
---|
| 4776 | data.ProjMode='projection';%default |
---|
[410] | 4777 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4778 | create_object(data,handles) |
---|
| 4779 | |
---|
| 4780 | %------------------------------------------------------------------------ |
---|
| 4781 | function Menupolygon_Callback(hObject, eventdata, handles) |
---|
| 4782 | %------------------------------------------------------------------------ |
---|
| 4783 | data.Type='polygon'; |
---|
| 4784 | data.ProjMode='inside';%default |
---|
[410] | 4785 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4786 | create_object(data,handles) |
---|
| 4787 | |
---|
| 4788 | %------------------------------------------------------------------------ |
---|
| 4789 | function Menurectangle_Callback(hObject, eventdata, handles) |
---|
| 4790 | %------------------------------------------------------------------------ |
---|
| 4791 | data.Type='rectangle'; |
---|
| 4792 | data.ProjMode='inside';%default |
---|
[410] | 4793 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4794 | create_object(data,handles) |
---|
| 4795 | |
---|
| 4796 | %------------------------------------------------------------------------ |
---|
| 4797 | function Menuellipse_Callback(hObject, eventdata, handles) |
---|
| 4798 | %------------------------------------------------------------------------ |
---|
| 4799 | data.Type='ellipse'; |
---|
| 4800 | data.ProjMode='inside';%default |
---|
[410] | 4801 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4802 | create_object(data,handles) |
---|
| 4803 | |
---|
| 4804 | %------------------------------------------------------------------------ |
---|
| 4805 | function MenuMaskObject_Callback(hObject, eventdata, handles) |
---|
| 4806 | %------------------------------------------------------------------------ |
---|
| 4807 | data.Type='polygon'; |
---|
| 4808 | data.TypeMenu={'polygon'}; |
---|
| 4809 | data.ProjMode='mask_inside';%default |
---|
| 4810 | data.ProjModeMenu={'mask_inside';'mask_outside'}; |
---|
| 4811 | create_object(data,handles) |
---|
| 4812 | |
---|
| 4813 | %------------------------------------------------------------------------ |
---|
| 4814 | function Menuplane_Callback(hObject, eventdata, handles) |
---|
| 4815 | %------------------------------------------------------------------------ |
---|
| 4816 | data.Type='plane'; |
---|
| 4817 | data.ProjMode='projection';%default |
---|
[410] | 4818 | data.ProjModeMenu={};% do not restrict ProjMode menus |
---|
[402] | 4819 | create_object(data,handles) |
---|
| 4820 | |
---|
| 4821 | %------------------------------------------------------------------------ |
---|
| 4822 | function Menuvolume_Callback(hObject, eventdata, handles) |
---|
| 4823 | %------------------------------------------------------------------------ |
---|
| 4824 | data.Type='volume'; |
---|
[581] | 4825 | data.ProjMode='interp_lin';%default |
---|
[410] | 4826 | data.ProjModeMenu={}; |
---|
[402] | 4827 | % set(handles.create,'Visible','on') |
---|
| 4828 | % set(handles.create,'Value',1) |
---|
[410] | 4829 | % VOLUME_Callback(hObject,eventdata,handles)data.ProjModeMenu={}; |
---|
[402] | 4830 | create_object(data,handles) |
---|
| 4831 | |
---|
| 4832 | %------------------------------------------------------------------------ |
---|
| 4833 | % --- generic function used for the creation of a projection object |
---|
| 4834 | function create_object(data,handles) |
---|
| 4835 | %------------------------------------------------------------------------ |
---|
[622] | 4836 | %% desactivate concurrent tools |
---|
| 4837 | hgeometry_calib=findobj(allchild(0),'tag','geometry_calib');% search the GUI geometric calibration |
---|
[402] | 4838 | if ishandle(hgeometry_calib) |
---|
| 4839 | hhgeometry_calib=guidata(hgeometry_calib); |
---|
[660] | 4840 | set(hhgeometry_calib.CheckEnableMouse,'Value',0)% desactivate mouse action in geometry_calib |
---|
[682] | 4841 | set(hhgeometry_calib.CheckEnableMouse,'BackgroundColor',[0.7 0.7 0.7]) |
---|
[402] | 4842 | end |
---|
[650] | 4843 | set(handles.CheckEditObject,'Value',0) %desactivate the object edit mode |
---|
| 4844 | CheckEditObject_Callback([],[],handles) |
---|
| 4845 | set(handles.CheckViewObject,'Value',0) % desactivate view_object (new object created) |
---|
[622] | 4846 | set(handles.CheckZoomFig,'Value',0) %desactivate zoom sub fig |
---|
| 4847 | set(handles.CheckZoom,'Value',0) %desactivate the zoom action |
---|
[701] | 4848 | set(handles.MenuObject,'checked','on')% indicate object creation for mouse pointer display |
---|
[622] | 4849 | if ishandle(handles.UVMAT_title) |
---|
| 4850 | delete(handles.UVMAT_title) %delete the initial display of uvmat if no field has been entered yet |
---|
| 4851 | end |
---|
| 4852 | |
---|
[648] | 4853 | %% initiate the new projection object |
---|
[410] | 4854 | UvData=get(handles.uvmat,'UserData'); |
---|
| 4855 | data.Name=data.Type;% default name=type |
---|
[402] | 4856 | data.Coord=[0 0]; %default |
---|
[674] | 4857 | check_plot=0; |
---|
[402] | 4858 | if isfield(UvData,'Field') |
---|
| 4859 | Field=UvData.Field; |
---|
[674] | 4860 | if isfield(Field,'NbDim')&& isequal(Field.NbDim,3) |
---|
| 4861 | data.Coord=[0 0 0]; %default |
---|
| 4862 | end |
---|
| 4863 | if isfield(Field,'CoordUnit') |
---|
| 4864 | data.CoordUnit=Field.CoordUnit; |
---|
| 4865 | end |
---|
[575] | 4866 | if isfield(UvData.Field,'CoordMesh')&&~isempty(UvData.Field.CoordMesh) |
---|
[404] | 4867 | data.RangeX=[UvData.Field.XMin UvData.Field.XMax]; |
---|
[650] | 4868 | switch data.Type |
---|
| 4869 | case {'line','polyline','points'} |
---|
| 4870 | data.RangeY=UvData.Field.CoordMesh; |
---|
| 4871 | case 'line_x' |
---|
[674] | 4872 | check_plot=1; %plot the line directly when set_object is opened |
---|
| 4873 | data.Type='line'; |
---|
| 4874 | data.RangeX=UvData.Field.XMin ; |
---|
[650] | 4875 | data.RangeY=UvData.Field.CoordMesh; |
---|
[674] | 4876 | data.Coord=[UvData.Field.XMin (UvData.Field.YMin +UvData.Field.YMax)/2;... |
---|
| 4877 | UvData.Field.XMax (UvData.Field.YMin +UvData.Field.YMax)/2];% put line at the middle of the y axis |
---|
[650] | 4878 | case 'line_y' |
---|
[674] | 4879 | check_plot=1; %plot the line directly when set_object is opened |
---|
| 4880 | data.Type='line'; |
---|
| 4881 | data.RangeX=UvData.Field.YMin ; |
---|
[650] | 4882 | data.RangeY=UvData.Field.CoordMesh; |
---|
[674] | 4883 | data.Coord=[(UvData.Field.XMin+UvData.Field.XMax)/2 UvData.Field.YMin;... |
---|
| 4884 | (UvData.Field.XMin +UvData.Field.XMax)/2 UvData.Field.YMax];% put line at the middle of the y axis |
---|
[650] | 4885 | case {'rectangle','ellipse'} |
---|
| 4886 | data.RangeY=[UvData.Field.YMin UvData.Field.YMax]; |
---|
| 4887 | data.RangeX=UvData.Field.CoordMesh; |
---|
| 4888 | data.RangeY=UvData.Field.CoordMesh; |
---|
| 4889 | otherwise |
---|
| 4890 | data.RangeY=[UvData.Field.YMin UvData.Field.YMax]; |
---|
[406] | 4891 | end |
---|
[575] | 4892 | data.DX=UvData.Field.CoordMesh; |
---|
| 4893 | data.DY=UvData.Field.CoordMesh; |
---|
[402] | 4894 | end |
---|
| 4895 | end |
---|
[674] | 4896 | |
---|
[622] | 4897 | hset_object=set_object(data,handles);% call the GUI set_object |
---|
[421] | 4898 | hchild=get(hset_object,'children'); |
---|
| 4899 | set(hchild,'enable','on') |
---|
[650] | 4900 | set(handles.DeleteObject,'Visible','on')% make the object delete button visible |
---|
[674] | 4901 | if check_plot |
---|
| 4902 | hhset_object=guidata(hset_object); |
---|
[680] | 4903 | set_object('REFRESH_Callback',1,[],hhset_object);% call the GUI set_object |
---|
[674] | 4904 | end |
---|
[689] | 4905 | set(handles.CheckViewField,'Visible','on') |
---|
| 4906 | set(handles.DeleteObject,'Visible','on') |
---|
| 4907 | set(handles.ListObject_1,'Visible','on') |
---|
| 4908 | set(handles.ListObject_1_title,'Visible','on') |
---|
[622] | 4909 | |
---|
[402] | 4910 | %------------------------------------------------------------------------ |
---|
| 4911 | function MenuBrowseObject_Callback(hObject, eventdata, handles) |
---|
| 4912 | %------------------------------------------------------------------------ |
---|
[680] | 4913 | %get the object file |
---|
[667] | 4914 | fileinput=uigetfile_uvmat('pick an xml object file:',get(handles.RootPath,'String'),'.xml'); |
---|
| 4915 | if ~isempty(fileinput) |
---|
| 4916 | %read the file |
---|
| 4917 | [data,heading]=xml2struct(fileinput); |
---|
| 4918 | if ~strcmp(heading,'ProjObject') |
---|
| 4919 | msgbox_uvmat('WARNING','The xml file does not have the heading ProjObject for projection objects') |
---|
| 4920 | end |
---|
| 4921 | ListObject=get(handles.ListObject,'String'); |
---|
[680] | 4922 | ListObject=[ListObject;{data.Name}]; |
---|
| 4923 | IndexObj=length(ListObject); |
---|
[667] | 4924 | UvData=get(handles.uvmat,'UserData'); |
---|
| 4925 | UvData.ProjObject{IndexObj}=[]; %create a new empty object |
---|
| 4926 | UvData.ProjObject{IndexObj}.DisplayHandle.uvmat=[]; %no plot handle before plot_field operation |
---|
| 4927 | UvData.ProjObject{IndexObj}.DisplayHandle.view_field=[]; %no plot handle before plot_field operation |
---|
| 4928 | set(handles.uvmat,'UserData',UvData) |
---|
| 4929 | set(handles.CheckViewObject,'Value',1) |
---|
| 4930 | set(handles.CheckViewField,'Value',1) |
---|
| 4931 | hset_object=set_object(data);% call the set_object interface |
---|
| 4932 | hhset_object=guidata(hset_object); |
---|
[680] | 4933 | set_object('REFRESH_Callback',hObject,eventdata,hhset_object);% plot projection |
---|
[667] | 4934 | set(handles.CheckEditObject,'Value',0); %suppress the object edit mode |
---|
| 4935 | CheckEditObject_Callback([],[],handles) |
---|
| 4936 | set(handles.DeleteObject,'Visible','on') |
---|
[477] | 4937 | end |
---|
[445] | 4938 | |
---|
[402] | 4939 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 4940 | % MenuTools Callbacks |
---|
| 4941 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 4942 | %------------------------------------------------------------------------ |
---|
[387] | 4943 | function MenuCalib_Callback(hObject, eventdata, handles) |
---|
| 4944 | %------------------------------------------------------------------------ |
---|
| 4945 | |
---|
| 4946 | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
---|
| 4947 | |
---|
| 4948 | %suppress competing options |
---|
| 4949 | set(handles.CheckZoom,'Value',0) |
---|
| 4950 | set(handles.CheckZoom,'BackgroundColor',[0.7 0.7 0.7]) |
---|
| 4951 | set(handles.ListObject,'Value',1) |
---|
| 4952 | % initiate display of GUI geometry_calib |
---|
| 4953 | data=[]; %default |
---|
| 4954 | if isfield(UvData,'CoordType') |
---|
| 4955 | data.CoordType=UvData.CoordType; |
---|
| 4956 | end |
---|
[515] | 4957 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
| 4958 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt]; |
---|
[710] | 4959 | set(handles.view_xml,'BackgroundColor',[1 1 0])%indicate the reading of the current xml file by geometry_calib |
---|
[657] | 4960 | geometry_calib(FileName);% call the geometry_calib interface |
---|
[710] | 4961 | set(handles.view_xml,'BackgroundColor',[1 1 1])%indicate the end of reading of the current xml file by geometry_calib |
---|
[387] | 4962 | set(handles.MenuCalib,'checked','on')% indicate that MenuCalib is activated, test used by mouse action |
---|
| 4963 | |
---|
[566] | 4964 | |
---|
| 4965 | %----------------------------------------------------------------------- |
---|
| 4966 | function MenuLIFCalib_Callback(hObject, eventdata, handles) |
---|
[387] | 4967 | %------------------------------------------------------------------------ |
---|
[567] | 4968 | %% read UvData properties stored on the uvmat interface |
---|
| 4969 | UvData=get(handles.uvmat,'UserData'); |
---|
| 4970 | if isfield(UvData,'XmlData')&& isfield(UvData.XmlData{1},'GeometryCalib') |
---|
| 4971 | XmlData=UvData.XmlData{1}; |
---|
| 4972 | else |
---|
| 4973 | msgbox_uvmat('ERROR','geometric calibration needed: use Tools/geometric calibration in the menu bar'); |
---|
| 4974 | return |
---|
| 4975 | end |
---|
| 4976 | |
---|
| 4977 | %% read lines currently drawn |
---|
[622] | 4978 | ListObj=UvData.ProjObject; |
---|
[566] | 4979 | select=zeros(1,numel(ListObj)); |
---|
| 4980 | for iobj=1:numel(ListObj); |
---|
[567] | 4981 | if isfield(ListObj{iobj},'Type') && strcmp(ListObj{iobj}.Type,'line') |
---|
[566] | 4982 | select(iobj)=1; |
---|
| 4983 | end |
---|
| 4984 | end |
---|
| 4985 | val=find(select); |
---|
| 4986 | if numel(val)<2 |
---|
| 4987 | msgbox_uvmat('ERROR','light rays must be defined by at least two lines created by Projection object/line in the menu bar'); |
---|
| 4988 | return |
---|
| 4989 | else |
---|
[567] | 4990 | set(handles.ListObject,'Value',val);% show the selected lines on the list |
---|
[622] | 4991 | ObjectData=UvData.ProjObject(val); |
---|
[566] | 4992 | for iobj=1:length(ObjectData) |
---|
[567] | 4993 | xA(iobj)=ObjectData{iobj}.Coord(1,1); |
---|
| 4994 | yA(iobj)=ObjectData{iobj}.Coord(1,2); |
---|
| 4995 | xB(iobj)=ObjectData{iobj}.Coord(2,1); |
---|
| 4996 | yB(iobj)=ObjectData{iobj}.Coord(2,2); |
---|
[566] | 4997 | end |
---|
| 4998 | end |
---|
| 4999 | |
---|
[567] | 5000 | %% find the origin as intersection of the two first lines (see http://www.ahristov.com/tutorial/geometry-games/intersection-lines.html ) |
---|
| 5001 | x1=xA(1);x2=xB(1); |
---|
| 5002 | x3=xA(2);x4=xB(2); |
---|
| 5003 | y1=yA(1);y2=yB(1); |
---|
| 5004 | y3=yA(2);y4=yB(2); |
---|
| 5005 | D = (x1-x2)*(y3-y4) -(y1-y2)*(x3-x4); |
---|
| 5006 | if D==0 |
---|
| 5007 | msgbox_uvmat('ERROR','the two lines are parallel'); |
---|
| 5008 | return |
---|
| 5009 | end |
---|
| 5010 | x0=((x3-x4)*(x1*y2-y1*x2)-(x1-x2)*(x3*y4-y3*x4))/D; |
---|
| 5011 | y0=((y3-y4)*(x1*y2-y1*x2)-(y1-y2)*(x3*y4-y3*x4))/D; |
---|
| 5012 | XmlData.Illumination.Origin=[x0 y0]; |
---|
| 5013 | XmlData.PolarCentre=[x0 y0]; |
---|
[566] | 5014 | |
---|
[567] | 5015 | %% display the current image in polar coordinates with origin at the illumination source |
---|
| 5016 | currentdir=pwd; |
---|
| 5017 | uvmatpath=fileparts(which('uvmat')); |
---|
| 5018 | cd(fullfile(uvmatpath,'transform_field')); |
---|
| 5019 | phys_polar=str2func('phys_polar'); |
---|
| 5020 | cd(currentdir) |
---|
| 5021 | DataOut=phys_polar(UvData.Field,XmlData); |
---|
| 5022 | view_field(DataOut); |
---|
[566] | 5023 | |
---|
[567] | 5024 | %% use the third line for reference luminosity |
---|
| 5025 | if numel(val)==3 |
---|
| 5026 | x_ref=linspace(ObjectData{3}.Coord(1,1),ObjectData{3}.Coord(2,1),10); |
---|
| 5027 | y_ref=linspace(ObjectData{3}.Coord(1,2),ObjectData{3}.Coord(2,2),10); |
---|
| 5028 | x_ref=x_ref-x0; |
---|
| 5029 | y_ref=y_ref-y0; |
---|
| 5030 | [theta_ref,r_ref] = cart2pol(x_ref,y_ref);%theta_ref and r_ref are the polar coordinates of the points on the line |
---|
| 5031 | theta_ref=theta_ref*180/pi; |
---|
| 5032 | figure |
---|
| 5033 | plot(theta_ref,r_ref) |
---|
| 5034 | azimuth_ima=linspace(DataOut.AY(1),DataOut.AY(2),size(DataOut.A,1));%profile of x index on the transformed image |
---|
| 5035 | dist_source = interp1(theta_ref,r_ref,azimuth_ima); |
---|
| 5036 | dist_source_pixel=round(size(DataOut.A,2)*(dist_source-DataOut.AX(1))/(DataOut.AX(2)-DataOut.AX(1))); |
---|
| 5037 | line_nan= isnan(dist_source_pixel); |
---|
| 5038 | dist_source_pixel(line_nan)=1; |
---|
| 5039 | width=20; %number of pixels used for reference |
---|
| 5040 | DataOut.A=double(DataOut.A); |
---|
| 5041 | Anorm=zeros(size(DataOut.A)); |
---|
| 5042 | Aval=mean(mean(DataOut.A)); |
---|
| 5043 | for iline=1:size(DataOut.A,1) |
---|
| 5044 | lum(iline)=mean(DataOut.A(iline,dist_source_pixel(iline):dist_source_pixel(iline)+width)); |
---|
| 5045 | Anorm(iline,:)=uint16(Aval*DataOut.A(iline,:)/lum(iline)); |
---|
| 5046 | end |
---|
| 5047 | lum(line_nan)=NaN; |
---|
| 5048 | figure |
---|
| 5049 | plot(1:size(DataOut.A,1),lum) |
---|
| 5050 | end |
---|
| 5051 | ImaName=regexprep([get(handles.RootFile,'String') get(handles.FileIndex,'String')],'//',''); |
---|
| 5052 | NewImageName=fullfile(get(handles.RootPath,'String'),'polar',[ImaName get(handles.FileExt,'String')]); |
---|
| 5053 | imwrite(Anorm,NewImageName,'BitDepth',16) |
---|
| 5054 | |
---|
| 5055 | %% record the origin in the xml file |
---|
| 5056 | XmlFileName=find_imadoc(get(handles.RootPath,'String'),get(handles.SubDir,'String'),get(handles.RootFile,'String'),get(handles.FileExt,'String')); |
---|
| 5057 | answer=msgbox_uvmat('INPUT_Y-N','save the illumination origin in the current xml file?'); |
---|
| 5058 | if strcmp(answer,'Yes') |
---|
| 5059 | t=xmltree(XmlFileName); %read the file |
---|
| 5060 | title=get(t,1,'name'); |
---|
| 5061 | if ~strcmp(title,'ImaDoc') |
---|
| 5062 | msgbox_uvmat('ERROR','wrong xml file'); |
---|
| 5063 | return |
---|
| 5064 | end |
---|
| 5065 | % backup the output file if it already exist, and read it |
---|
| 5066 | backupfile=XmlFileName; |
---|
| 5067 | testexist=2; |
---|
| 5068 | while testexist==2 |
---|
| 5069 | backupfile=[backupfile '~']; |
---|
| 5070 | testexist=exist(backupfile,'file'); |
---|
| 5071 | end |
---|
| 5072 | [success,message]=copyfile(XmlFileName,backupfile);%make backup |
---|
| 5073 | if success~=1 |
---|
| 5074 | errormsg=['errror in xml file backup: ' message]; |
---|
| 5075 | return |
---|
| 5076 | end |
---|
| 5077 | uid_illumination=find(t,'ImaDoc/Illumination'); |
---|
| 5078 | if isempty(uid_illumination) %if GeometryCalib does not already exists, create it |
---|
| 5079 | [t,uid_illumination]=add(t,1,'element','Illumination'); |
---|
| 5080 | end |
---|
| 5081 | uid_origin=find(t,'ImaDoc/Illumination/Origin'); |
---|
| 5082 | if ~isempty(uid_origin) %if GeometryCalib does not already exists, create it |
---|
| 5083 | t=delete(t,uid_origin); |
---|
| 5084 | end |
---|
| 5085 | % save the illumination origin |
---|
| 5086 | t=struct2xml(XmlData.Illumination,t,uid_illumination); |
---|
| 5087 | save(t,XmlFileName); |
---|
| 5088 | end |
---|
| 5089 | |
---|
| 5090 | |
---|
| 5091 | |
---|
[566] | 5092 | %------------------------------------------------------------------------ |
---|
[387] | 5093 | function MenuMask_Callback(hObject, eventdata, handles) |
---|
| 5094 | %------------------------------------------------------------------------ |
---|
| 5095 | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
---|
[622] | 5096 | ListObj=UvData.ProjObject; |
---|
[387] | 5097 | select=zeros(1,numel(ListObj)); |
---|
| 5098 | for iobj=1:numel(ListObj); |
---|
| 5099 | if strcmp(ListObj{iobj}.ProjMode,'mask_inside')||strcmp(ListObj{iobj}.ProjMode,'mask_outside') |
---|
| 5100 | select(iobj)=1; |
---|
| 5101 | end |
---|
| 5102 | end |
---|
| 5103 | val=find(select); |
---|
| 5104 | if isempty(val) |
---|
| 5105 | msgbox_uvmat('ERROR','polygons must be first created by Projection object/mask polygon in the menu bar'); |
---|
| 5106 | return |
---|
| 5107 | else |
---|
| 5108 | set(handles.ListObject,'Value',val); |
---|
| 5109 | flag=1; |
---|
[627] | 5110 | if ~isfield(UvData.Field,'A') |
---|
| 5111 | msgbox_uvmat('ERROR','an image needs to be opened to set the mask size'); |
---|
| 5112 | return |
---|
| 5113 | end |
---|
[387] | 5114 | npx=size(UvData.Field.A,2); |
---|
| 5115 | npy=size(UvData.Field.A,1); |
---|
| 5116 | xi=0.5:npx-0.5; |
---|
| 5117 | yi=0.5:npy-0.5; |
---|
| 5118 | [Xi,Yi]=meshgrid(xi,yi); |
---|
[622] | 5119 | for iobj=1:length(UvData.ProjObject) |
---|
| 5120 | ObjectData=UvData.ProjObject{iobj}; |
---|
[387] | 5121 | if isfield(ObjectData,'ProjMode') &&(isequal(ObjectData.ProjMode,'mask_inside')||isequal(ObjectData.ProjMode,'mask_outside')); |
---|
| 5122 | flagobj=1; |
---|
| 5123 | testphys=0; %coordinates in pixels by default |
---|
| 5124 | if isfield(ObjectData,'CoordUnit') && ~isequal(ObjectData.CoordUnit,'pixel') |
---|
| 5125 | if isfield(UvData,'XmlData')&& isfield(UvData.XmlData{1},'GeometryCalib') |
---|
| 5126 | Calib=UvData.XmlData{1}.GeometryCalib; |
---|
| 5127 | testphys=1; |
---|
| 5128 | end |
---|
| 5129 | end |
---|
| 5130 | if isfield(ObjectData,'Coord')&& isfield(ObjectData,'Type') |
---|
| 5131 | if isequal(ObjectData.Type,'polygon') |
---|
| 5132 | X=ObjectData.Coord(:,1); |
---|
| 5133 | Y=ObjectData.Coord(:,2); |
---|
| 5134 | if testphys |
---|
[542] | 5135 | pos=[X Y zeros(size(X))]; |
---|
| 5136 | if isfield(Calib,'SliceCoord') && length(Calib.SliceCoord)>=3 |
---|
| 5137 | if isfield(Calib,'SliceAngle')&&~isequal(Calib.SliceAngle,[0 0 0]) |
---|
| 5138 | om=norm(Calib.SliceAngle);%norm of rotation angle in radians |
---|
| 5139 | OmAxis=Calib.SliceAngle/om; %unit vector marking the rotation axis |
---|
| 5140 | cos_om=cos(pi*om/180); |
---|
| 5141 | sin_om=sin(pi*om/180); |
---|
| 5142 | pos=cos_om*pos+sin_om*cross(OmAxis,pos)+(1-cos_om)*(OmAxis*pos')*OmAxis; |
---|
| 5143 | end |
---|
| 5144 | pos(:,1)=pos(:,1)+Calib.SliceCoord(1); |
---|
| 5145 | pos(:,2)=pos(:,2)+Calib.SliceCoord(2); |
---|
| 5146 | pos(:,3)=pos(:,3)+Calib.SliceCoord(3); |
---|
| 5147 | end |
---|
| 5148 | [X,Y]=px_XYZ(Calib,pos(:,1),pos(:,2),pos(:,3)); |
---|
[387] | 5149 | end |
---|
| 5150 | flagobj=~inpolygon(Xi,Yi,X',Y');%=0 inside the polygon, 1 outside |
---|
| 5151 | elseif isequal(ObjectData.Type,'ellipse') |
---|
| 5152 | if testphys |
---|
| 5153 | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys |
---|
| 5154 | end |
---|
| 5155 | RangeX=max(ObjectData.RangeX); |
---|
| 5156 | RangeY=max(ObjectData.RangeY); |
---|
| 5157 | X2Max=RangeX*RangeX; |
---|
| 5158 | Y2Max=RangeY*RangeY; |
---|
| 5159 | distX=(Xi-ObjectData.Coord(1,1)); |
---|
| 5160 | distY=(Yi-ObjectData.Coord(1,2)); |
---|
| 5161 | flagobj=(distX.*distX/X2Max+distY.*distY/Y2Max)>1; |
---|
| 5162 | elseif isequal(ObjectData.Type,'rectangle') |
---|
| 5163 | if testphys |
---|
| 5164 | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys |
---|
| 5165 | end |
---|
| 5166 | distX=abs(Xi-ObjectData.Coord(1,1)); |
---|
| 5167 | distY=abs(Yi-ObjectData.Coord(1,2)); |
---|
| 5168 | flagobj=distX>max(ObjectData.RangeX) | distY>max(ObjectData.RangeY); |
---|
| 5169 | end |
---|
| 5170 | if isequal(ObjectData.ProjMode,'mask_outside') |
---|
| 5171 | flagobj=~flagobj; |
---|
| 5172 | end |
---|
| 5173 | flag=flag & flagobj; |
---|
| 5174 | end |
---|
| 5175 | end |
---|
| 5176 | end |
---|
| 5177 | %mask name |
---|
| 5178 | RootPath=get(handles.RootPath,'String'); |
---|
[444] | 5179 | SubDir=get(handles.SubDir,'String'); |
---|
[387] | 5180 | RootFile=get(handles.RootFile,'String'); |
---|
| 5181 | if ~isempty(RootFile)&&(isequal(RootFile(1),'/')|| isequal(RootFile(1),'\')) |
---|
| 5182 | RootFile(1)=[]; |
---|
| 5183 | end |
---|
| 5184 | list=get(handles.masklevel,'String'); |
---|
| 5185 | masknumber=num2str(length(list)); |
---|
| 5186 | maskindex=get(handles.masklevel,'Value'); |
---|
[444] | 5187 | mask_name=fullfile_uvmat(RootPath,[SubDir '.mask'],'mask','.png','_1',maskindex); |
---|
[387] | 5188 | imflag=uint8(255*(0.392+0.608*flag));% =100 for flag=0 (vectors not computed when 20<imflag<200) |
---|
| 5189 | imflag=flipdim(imflag,1); |
---|
| 5190 | |
---|
| 5191 | %display the mask |
---|
| 5192 | hfigmask=figure; |
---|
| 5193 | set(hfigmask,'Name','mask image') |
---|
| 5194 | vec=linspace(0,1,256);%define a linear greyscale colormap |
---|
| 5195 | map=[vec' vec' vec']; |
---|
| 5196 | colormap(map) |
---|
| 5197 | image(imflag); |
---|
| 5198 | answer=msgbox_uvmat('INPUT_TXT','mask file name:', mask_name); |
---|
| 5199 | if ~strcmp(answer,'Cancel') |
---|
| 5200 | mask_dir=fileparts(answer); |
---|
| 5201 | if ~exist(mask_dir,'dir') |
---|
[444] | 5202 | [xx,msg1]=mkdir(mask_dir); |
---|
| 5203 | if ~strcmp(msg1,'') |
---|
| 5204 | errormsg=['cannot create ' mask_dir ': ' msg1];%error message for directory creation |
---|
| 5205 | return |
---|
| 5206 | end |
---|
[387] | 5207 | end |
---|
| 5208 | imwrite(imflag,answer,'BitDepth',8); |
---|
| 5209 | end |
---|
| 5210 | set(handles.ListObject,'Value',1) |
---|
| 5211 | end |
---|
| 5212 | |
---|
| 5213 | %------------------------------------------------------------------------ |
---|
| 5214 | %-- open the GUI set_grid.fig to create grid |
---|
| 5215 | function MenuGrid_Callback(hObject, eventdata, handles) |
---|
| 5216 | %------------------------------------------------------------------------ |
---|
| 5217 | %suppress the other options if grid is chosen |
---|
| 5218 | set(handles.edit_vect,'Value',0) |
---|
| 5219 | edit_vect_Callback(hObject, eventdata, handles) |
---|
| 5220 | set(handles.ListObject,'Value',1) |
---|
| 5221 | |
---|
| 5222 | %prepare display of the set_grid GUI |
---|
[515] | 5223 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
| 5224 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt]; |
---|
[576] | 5225 | UvData=get(handles.uvmat,'UserData'); |
---|
[591] | 5226 | % CoordList=get(handles.TransformName,'String'); |
---|
| 5227 | % val=get(handles.TransformName,'Value'); |
---|
[576] | 5228 | set_grid(FileName,UvData.Field);% call the set_object interface |
---|
[387] | 5229 | |
---|
[402] | 5230 | |
---|
[387] | 5231 | %------------------------------------------------------------------------ |
---|
[402] | 5232 | function MenuRuler_Callback(hObject, eventdata, handles) |
---|
| 5233 | %------------------------------------------------------------------------ |
---|
| 5234 | set(handles.CheckZoom,'Value',0) |
---|
| 5235 | CheckZoom_Callback(handles.uvmat, [], handles) |
---|
| 5236 | set(handles.MenuRuler,'checked','on') |
---|
| 5237 | UvData=get(handles.uvmat,'UserData'); |
---|
| 5238 | UvData.MouseAction='ruler'; |
---|
| 5239 | set(handles.uvmat,'UserData',UvData); |
---|
| 5240 | |
---|
| 5241 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 5242 | % MenuRun Callbacks |
---|
| 5243 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 5244 | |
---|
| 5245 | %------------------------------------------------------------------------ |
---|
[387] | 5246 | % open the GUI 'series' |
---|
| 5247 | function MenuSeries_Callback(hObject, eventdata, handles) |
---|
| 5248 | %------------------------------------------------------------------------ |
---|
[651] | 5249 | Param=read_param(handles); |
---|
| 5250 | series(Param); %run the series interface |
---|
| 5251 | |
---|
| 5252 | % -------------------------------------------------------------------- |
---|
| 5253 | function MenuPIV_Callback(hObject, eventdata, handles) |
---|
| 5254 | Param=read_param(handles); |
---|
[654] | 5255 | % Param.ActionName='civ_series'; |
---|
| 5256 | hseries=series(Param); |
---|
| 5257 | hhseries=guidata(hseries); |
---|
| 5258 | ActionMenu=get(hhseries.ActionName,'String'); |
---|
| 5259 | index_action=find(strcmp('civ_series',ActionMenu)); |
---|
| 5260 | set(hhseries.ActionName,'Value',index_action); |
---|
| 5261 | series('ActionName_Callback',hObject,eventdata,hhseries); %file input with xml reading in uvmat, show the image in phys coordinates |
---|
[651] | 5262 | |
---|
[654] | 5263 | |
---|
[651] | 5264 | %------------------------------------------------------------------------ |
---|
| 5265 | % -- open the GUI civ.fig for PIV |
---|
| 5266 | function MenuCIVx_Callback(hObject, eventdata, handles) |
---|
| 5267 | %------------------------------------------------------------------------ |
---|
| 5268 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
| 5269 | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt]; |
---|
| 5270 | civ(FileName);% interface de civ(not in the uvmat file) |
---|
| 5271 | |
---|
| 5272 | function Param=read_param(handles) |
---|
| 5273 | |
---|
[515] | 5274 | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
---|
[526] | 5275 | Param.FileName=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt];%first input file name |
---|
[387] | 5276 | if isequal(get(handles.SubField,'Value'),1) |
---|
[515] | 5277 | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
---|
| 5278 | FileName_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1]; |
---|
[526] | 5279 | if ~isequal(FileName_1,Param.FileName) |
---|
| 5280 | Param.FileName_1=FileName_1;%second input file name if relevant |
---|
[387] | 5281 | end |
---|
| 5282 | end |
---|
[526] | 5283 | Param.NomType=get(handles.NomType,'String'); |
---|
| 5284 | Param.NomType_1=get(handles.NomType_1,'String'); |
---|
| 5285 | Param.CheckFixPair=get(handles.CheckFixPair,'Value'); |
---|
| 5286 | UvData=get(handles.uvmat,'UserData'); |
---|
[387] | 5287 | if isfield(UvData,'XmlData')&& isfield(UvData.XmlData{1},'Time') |
---|
[526] | 5288 | Param.Time=UvData.XmlData{1}.Time; |
---|
[387] | 5289 | end |
---|
| 5290 | if isequal(get(handles.scan_i,'Value'),1) |
---|
[526] | 5291 | Param.incr_i=str2num(get(handles.num_IndexIncrement,'String')); |
---|
[387] | 5292 | elseif isequal(get(handles.scan_j,'Value'),1) |
---|
[526] | 5293 | Param.incr_j=str2num(get(handles.num_IndexIncrement,'String')); |
---|
[387] | 5294 | end |
---|
[526] | 5295 | |
---|
| 5296 | %% transfer fields and coordinate names |
---|
| 5297 | Param.list_fields=get(handles.FieldName,'String');% list menu fields |
---|
| 5298 | FieldName=Param.list_fields{get(handles.FieldName,'Value')}; |
---|
| 5299 | ind_image=find(strcmp('image',Param.list_fields)); |
---|
| 5300 | if ~isempty(ind_image) && numel(Param.list_fields)>1 |
---|
| 5301 | Param.list_fields(ind_image)=[]; %suppress 'image' option |
---|
[387] | 5302 | end |
---|
[526] | 5303 | Param.index_fields=find(strcmp(FieldName,Param.list_fields));% selected string index |
---|
| 5304 | Param.list_fields_1=get(handles.FieldName_1,'String');% list menu fields |
---|
| 5305 | if ischar(Param.list_fields_1),Param.list_fields_1={Param.list_fields_1};end |
---|
| 5306 | FieldName_1=Param.list_fields_1{get(handles.FieldName_1,'Value')}; |
---|
| 5307 | ind_image=find(strcmp('image',Param.list_fields_1)); |
---|
| 5308 | if ~isempty(ind_image) && numel(Param.list_fields_1)>1 |
---|
| 5309 | Param.list_fields_1(ind_image)=[]; %suppress 'image' option |
---|
[387] | 5310 | end |
---|
[526] | 5311 | Param.index_fields_1=find(strcmp(FieldName_1,Param.list_fields_1));% selected string index |
---|
[591] | 5312 | TransformList=get(handles.TransformName,'String'); |
---|
| 5313 | Param.TransformName=TransformList{get(handles.TransformName,'Value')}; |
---|
[526] | 5314 | Param.Coord_x_str=get(handles.Coord_x,'String'); |
---|
| 5315 | Param.Coord_x_val=get(handles.Coord_x,'Value'); |
---|
[646] | 5316 | Param.Coord_y_str=get(handles.Coord_y,'Data'); |
---|
[387] | 5317 | |
---|
[402] | 5318 | % -------------------------------------------------------------------- |
---|
| 5319 | function MenuHelp_Callback(hObject, eventdata, handles) |
---|
| 5320 | % -------------------------------------------------------------------- |
---|
[646] | 5321 | web('http://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/wiki/UvmatHelp') |
---|
[497] | 5322 | |
---|
[646] | 5323 | % path_to_uvmat=which ('uvmat');% check the path of uvmat |
---|
| 5324 | % pathelp=fileparts(path_to_uvmat); |
---|
| 5325 | % helpfile=fullfile(pathelp,'uvmat_doc','uvmat_doc.html'); |
---|
| 5326 | % if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the sub-directory /uvmat_doc of the UVMAT package') |
---|
| 5327 | % else |
---|
| 5328 | % addpath (fullfile(pathelp,'uvmat_doc')) |
---|
| 5329 | % web(helpfile); |
---|
| 5330 | % end |
---|
| 5331 | |
---|
[517] | 5332 | % --- Executes on selection change in Coord_y. |
---|
| 5333 | function Coord_y_Callback(hObject, eventdata, handles) |
---|
| 5334 | |
---|
| 5335 | % --- Executes on selection change in Coord_x. |
---|
| 5336 | function Coord_x_Callback(hObject, eventdata, handles) |
---|
[546] | 5337 | |
---|
| 5338 | |
---|
| 5339 | % --- Executes on button press in CheckColorBar. |
---|
| 5340 | function CheckColorBar_Callback(hObject, eventdata, handles) |
---|
[591] | 5341 | |
---|
| 5342 | |
---|
| 5343 | |
---|
| 5344 | function TransformPath_Callback(hObject, eventdata, handles) |
---|
| 5345 | % hObject handle to TransformPath (see GCBO) |
---|
| 5346 | % eventdata reserved - to be defined in a future version of MATLAB |
---|
| 5347 | % handles structure with handles and user data (see GUIDATA) |
---|
| 5348 | |
---|
| 5349 | % Hints: get(hObject,'String') returns contents of TransformPath as text |
---|
| 5350 | % str2double(get(hObject,'String')) returns contents of TransformPath as a double |
---|
[598] | 5351 | |
---|
| 5352 | |
---|
| 5353 | %TODO: use to modify fill_GUI |
---|
| 5354 | %'write_plot_param': update the plotting parameters on the uvmat or view_field interface after a plotting operation |
---|
| 5355 | function write_plot_param(handles,PlotParam) |
---|
| 5356 | %% coordinates |
---|
| 5357 | if isempty(PlotParam.Coordinates) |
---|
| 5358 | set(handles.Coordinates,'Visible','off') |
---|
| 5359 | set(handles.PlotAxes,'Visible','off') |
---|
| 5360 | set(handles.text_display,'Visible','off') |
---|
| 5361 | set(handles.TableDisplay,'Visible','on') |
---|
| 5362 | else |
---|
| 5363 | set(handles.Coordinates,'Visible','on') |
---|
| 5364 | set(handles.PlotAxes,'Visible','on') |
---|
| 5365 | set(handles.text_display,'Visible','on') |
---|
| 5366 | if isfield(handles,'TableDisplay') |
---|
| 5367 | set(handles.TableDisplay,'Visible','off') |
---|
| 5368 | end |
---|
| 5369 | Coordinates=PlotParam.Coordinates; |
---|
| 5370 | if isfield(Coordinates,'CheckFixAspectRatio') |
---|
| 5371 | if Coordinates.CheckFixAspectRatio |
---|
| 5372 | set(handles.CheckFixAspectRatio,'Value',1) |
---|
| 5373 | else |
---|
| 5374 | set(handles.CheckFixAspectRatio,'Value',0) |
---|
| 5375 | |
---|
| 5376 | end |
---|
| 5377 | end |
---|
| 5378 | if isfield(Coordinates,'AspectRatio') |
---|
| 5379 | set(handles.num_AspectRatio,'String',num2str(Coordinates.AspectRatio)) |
---|
| 5380 | end |
---|
| 5381 | if isfield(Coordinates,'MinX') |
---|
| 5382 | set(handles.num_MinX,'String',num2str(Coordinates.MinX,4)); |
---|
| 5383 | set(handles.num_MaxX,'String',num2str(Coordinates.MaxX,4)); |
---|
| 5384 | set(handles.num_MinY,'String',num2str(Coordinates.MinY,4)); |
---|
| 5385 | set(handles.num_MaxY,'String',num2str(Coordinates.MaxY,4)); |
---|
| 5386 | else |
---|
| 5387 | set(handles.num_MinX,'String',''); |
---|
| 5388 | set(handles.num_MaxX,'String',''); |
---|
| 5389 | set(handles.num_MinY,'String',''); |
---|
| 5390 | set(handles.num_MaxY,'String',''); |
---|
| 5391 | end |
---|
| 5392 | end |
---|
| 5393 | |
---|
| 5394 | %% scalar or image parameters |
---|
| 5395 | if isfield(PlotParam,'Scalar') |
---|
| 5396 | set(handles.Scalar,'Visible','on') |
---|
| 5397 | if isfield(PlotParam.Scalar,'MaxA') |
---|
| 5398 | set(handles.num_MaxA,'String',num2str(PlotParam.Scalar.MaxA,3)); |
---|
| 5399 | end |
---|
| 5400 | if isfield(PlotParam.Scalar,'MinA') |
---|
| 5401 | set(handles.num_MinA,'String',num2str(PlotParam.Scalar.MinA,3)); |
---|
| 5402 | end |
---|
| 5403 | if isfield(PlotParam.Scalar,'IncrA') |
---|
| 5404 | set(handles.num_IncrA,'String',num2str(PlotParam.Scalar.IncrA,3)) |
---|
| 5405 | end |
---|
| 5406 | set(handles.CheckBW,'Value',PlotParam.Scalar.CheckBW) |
---|
| 5407 | if isfield(PlotParam.Scalar,'Opacity')&&isfield(handles,'num_Opacity') |
---|
| 5408 | set(handles.num_Opacity,'String',num2str(PlotParam.Scalar.Opacity)) |
---|
| 5409 | end |
---|
| 5410 | else |
---|
| 5411 | set(handles.Scalar,'Visible','off') |
---|
| 5412 | end |
---|
| 5413 | |
---|
| 5414 | %% parameter for vector field |
---|
| 5415 | if isfield(PlotParam,'Vectors') |
---|
| 5416 | set(handles.Vectors,'Visible','on') |
---|
| 5417 | if isfield(PlotParam.Vectors,'VecScale') |
---|
| 5418 | set(handles.num_VecScale,'String',num2str(PlotParam.Vectors.VecScale,3)) |
---|
| 5419 | end |
---|
| 5420 | if isfield(PlotParam.Vectors,'MinC')&& isfield(PlotParam.Vectors,'MaxC') |
---|
| 5421 | MinC=PlotParam.Vectors.MinC; |
---|
| 5422 | MaxC=PlotParam.Vectors.MaxC; |
---|
| 5423 | set(handles.num_MinVec,'String', num2str(MinC,3)); |
---|
| 5424 | set(handles.num_MaxVec,'String',num2str(MaxC,3)); |
---|
| 5425 | list=get(handles.ColorCode,'String'); |
---|
| 5426 | ichoice=get(handles.ColorCode,'Value'); |
---|
| 5427 | color_option=list{ichoice}; |
---|
| 5428 | test3color=strcmp(color_option,'rgb')||strcmp(color_option,'bgr'); |
---|
| 5429 | if test3color% need to update color thresholds |
---|
| 5430 | set(handles.num_ColCode1,'Visible','on') |
---|
| 5431 | set(handles.num_ColCode2,'Visible','on') |
---|
| 5432 | set(handles.Slider1,'Visible','on') |
---|
| 5433 | set(handles.Slider2,'Visible','on') |
---|
| 5434 | set(handles.num_ColCode1,'String',num2str(PlotParam.Vectors.ColCode1,3)) |
---|
| 5435 | set(handles.num_ColCode2,'String',num2str(PlotParam.Vectors.ColCode2,3)) |
---|
| 5436 | set(handles.Slider1,'Value',(PlotParam.Vectors.ColCode1-MinC)/(MaxC-MinC)) |
---|
| 5437 | set(handles.Slider2,'Value',(PlotParam.Vectors.ColCode2-MinC)/(MaxC-MinC)) |
---|
| 5438 | else |
---|
| 5439 | set(handles.num_ColCode1,'Visible','off') |
---|
| 5440 | set(handles.num_ColCode2,'Visible','off') |
---|
| 5441 | set(handles.Slider1,'Visible','off') |
---|
| 5442 | set(handles.Slider2,'Visible','off') |
---|
| 5443 | end |
---|
| 5444 | end |
---|
| 5445 | else |
---|
| 5446 | set(handles.Vectors,'Visible','off') |
---|
| 5447 | if isfield(handles,'edit_vect') |
---|
| 5448 | set(handles.edit_vect,'Visible','off') |
---|
| 5449 | set(handles.record,'Visible','off') |
---|
| 5450 | end |
---|
| 5451 | end |
---|
[690] | 5452 | |
---|
| 5453 | |
---|
| 5454 | % --- Executes on button press in CheckTable. |
---|
| 5455 | function CheckTable_Callback(hObject, eventdata, handles) |
---|
| 5456 | if get(handles.CheckTable,'Value') |
---|
| 5457 | set(handles.TableDisplay,'Visible','on') |
---|
| 5458 | else |
---|
| 5459 | set(handles.TableDisplay,'Visible','off') |
---|
| 5460 | end |
---|