Changeset 1016 for trunk

Timestamp:

Oct 5, 2017, 7:47:58 PM (7 years ago)

Author:

sommeria

Message:

bugs repaired for multilevel series

Location:

trunk/src

Files:

• series.m (modified) (6 diffs)
• series/civ_input.m (modified) (2 diffs)

trunk/src/series.m

@@ -1010 +1010 @@
         Time=XmlData.Time;
         TimeName='xml';
-%                         if XmlData.Time(1,:)==XmlData.Time(2,:)% case starting with index 1
-%                     sizDti=size(XmlData.Time,1)-1; % size of the time vector explicitly defined in the xml file
-%                     ind_start=1;
-%                 else 
-%                     sizDti=size(XmlData.Time,1); % case starting with index 0
-%                     ind_start=0;
-%                 end
-%         % complement the input if the whole time series is not defined
-%             if size(i1_series,3)>size(XmlData.Time,1)-ind_start %only the first time interval is defined, extrapolate to the whole series
-%                 Dti_total=XmlData.Time(end)-XmlData.Time(1); % total time interval covered by the time vector
-%                 missing_indices=sizDti+1+ind_start:size(i1_series,3)+1; % remaining set of frame indices for which time needs to be found
-%                 repeat_nbre=1+floor((missing_indices-sizDti-ind_start)/(sizDti-1)); % number of repetitions of Dti
-%                 time_indices=1+mod(missing_indices-sizDti-1,sizDti-1);
-%                 for j=1:size(XmlData.Time,2)
-%                 Time(missing_indices,j)=XmlData.Time(time_indices,j)+repeat_nbre'*Dti_total;
-%                 end
-%                 % update the xml file with NbDti
-%                 t=xmltree(XmlFileName);
-%                 uid_NbDti=find(t,'ImaDoc/Camera/BurstTiming/NbDti')
-%                 if isempty(uid_NbDti)
-%                     uid_BurstTiming=find(t,'ImaDoc/Camera/BurstTiming')
-%                     [t,uid_NbDti]=add(t,uid_BurstTiming,'element','NbDti');
-%                 end
-%                 [t,uid_NbDti]=add(t,uid_NbDti,'chardata',num2str(repeat_nbre(end)-1));
-%                 save(t,XmlFileName)
-%             end
     end
     if isfield(XmlData,'Camera')
-        %         if isfield(XmlData.Camera,'NbSlice')&& ~isempty(XmlData.Camera.NbSlice)
-        %             if iview>1 && ~isempty(NbSlice) && ~strcmp(NbSlice,XmlData.Camera.NbSlice)
-        %                 msgbox_uvmat('WARNING','inconsistent number of slices with the first field series');
-        %             end
-        %             NbSlice=XmlData.Camera.NbSlice; % Nbre of slices from camera
-        %         end
         if isfield(XmlData.Camera,'TimeUnit')&& ~isempty(XmlData.Camera.TimeUnit)
             if iview>1 && ~isempty(TimeUnit) && ~strcmp(TimeUnit,XmlData.Camera.TimeUnit)
@@ -1061 +1029 @@
     end
    
-    if isfield(XmlData,'GeometryCalib')
-        check_calib=1;
-        if isfield(XmlData.GeometryCalib,'SliceCoord')
-            siz=size(XmlData.GeometryCalib.SliceCoord);
-            if ~isempty(NbSlice)&& ~isequal(size(1),NbSlice)
-                msgbox_uvmat('WARNING','inconsistent numbers of Z indices between motor and calibration');
-            else
-                NbSlice=siz(1);
-            end
-        end
-    end
+%     if isfield(XmlData,'GeometryCalib')
+%         check_calib=1;
+%         if isfield(XmlData.GeometryCalib,'SliceCoord')
+%             siz=size(XmlData.GeometryCalib.SliceCoord);
+%             if ~isempty(NbSlice)&& ~isequal(size(1),NbSlice)
+%                 msgbox_uvmat('WARNING','inconsistent numbers of Z indices between motor and calibration');
+%             else
+%                 NbSlice=siz(1);
+%             end
+%         end
+%     end
 end
 if ~isempty(NbSlice)
@@ -1122 +1090 @@
 SeriesData.FileInfo{iview}=FileInfo;
 SeriesData.Time{iview}=Time;
-% if ~isempty(TimeName)
-%     SeriesData.TimeSource=TimeSource;
-% end
+
+SeriesData.TimeName=TimeName;
+
 if check_calib
     SeriesData.GeometryCalib{iview}=XmlData.GeometryCalib;
@@ -3628 +3596 @@
     ref_j=str2num(get(handles.num_first_j,'String'));
 end
-[ModeMenu,ModeValue]=update_mode(SeriesData.i1_series{iview},SeriesData.i2_series{iview},SeriesData.j2_series{iview});
-displ_pair=update_listpair(SeriesData.i1_series{iview},SeriesData.i2_series{iview},SeriesData.j1_series{iview},SeriesData.j2_series{iview},ModeMenu{ModeValue},...
-                                                     SeriesData.Time{iview},TimeUnit,ref_i,ref_j,SeriesData.FileInfo{iview});
+[ModeMenu,ModeValue]=update_mode(SeriesData.i1_series{1},SeriesData.i2_series{1},SeriesData.j2_series{1});
+InputTable=get(handles.InputTable,'Data');
+displ_pair=update_listpair(SeriesData.i1_series{1},SeriesData.i2_series{1},SeriesData.j1_series{1},SeriesData.j2_series{1},ModeMenu{ModeValue},...
+                                                 SeriesData.Time{1},TimeUnit,ref_i,ref_j,SeriesData.TimeName,InputTable,SeriesData.FileInfo{1});
+for iline=1:size(InputTable,1)
+    viewcell{iline}=num2str(iline);
+end
+viewcell=viewcell';
+ModeMenu={'bursts';'series(Dj)'};
+ModeValue=1;                                               
+                   %i1_series,i2_series,j1_series,j2_series,mode,time,TimeUnit,ref_i,ref_j,TimeName,InputTable,FileInfo                              
 % first raw of the GUI
 uicontrol('Style','text','Units','normalized', 'Position', [0.05 0.88 0.5 0.1],'BackgroundColor',BackgroundColor,...
     'String','row to edit #','FontUnits','points','FontSize',12,'FontWeight','bold','ForegroundColor','blue','HorizontalAlignment','right'); % title
 uicontrol('Style','popupmenu','Units','normalized', 'Position', [0.54 0.8 0.3 0.2],'BackgroundColor',[1 1 1],...
-    'Callback',@(hObject,eventdata)ListView_Callback(hObject,eventdata),'String',ListViewMenu,'Value',ListViewValue,'FontUnits','points','FontSize',12,'FontWeight','bold',...
+    'Callback',@(hObject,eventdata)ListView_Callback(hObject,eventdata),'String',viewcell,'Value',1,'FontUnits','points','FontSize',12,'FontWeight','bold',...
     'Tag','ListView','TooltipString','''ListView'':choice of the file series w for pair display');
 % second raw of the GUI
@@ -3686 +3662 @@
 
 %% enable j index visibility after the new choice
-status_j='on'; % default
-if isempty(find(~cellfun(@isempty,SeriesData.j1_series), 1)); % case of empty j indices
-    status_j='off'; % no j index needed
-elseif strcmp(get(handles.PairString,'Visible'),'on')
-    check_burst=cellfun(@isempty,regexp(PairString,'^j')); % =0 for burst case, 1 otherwise
-    if isempty(find(check_burst, 1))% if all pair string begins by j (burst)
-        status_j='off'; % no j index needed for bust case
-    end
-end
-enable_j(handles,status_j) % no j index needed
+
+if strcmp(mode,'series(Dj)')
+   status_j='on'; % default
+else
+       status_j='off'; % no j index needed for bust case
+end
+enable_j(hhseries,status_j) % no j index needed
 
 %% get the reference indices for the time interval Dt
@@ -3711 +3684 @@
 
 %% update the menu ListPair
-Menu=update_listpair(i1_series,i2_series,j1_series,j2_series,mode,SeriesData.Time{iview},TimeUnit,ref_i,ref_j,FileInfo);
+Menu=update_listpair(i1_series,i2_series,j1_series,j2_series,mode,SeriesData.Time{iview},TimeUnit,ref_i,ref_j,SeriesData.FileInfo);
 hlist_pairs=findobj(get(hObject,'parent'),'Tag','ListPair');
 set(hlist_pairs,'Value',1)% set the first choice by default in ListPair

trunk/src/series/civ_input.m

@@ -320 +320 @@
 if ~isfield(Param.IndexRange,'first_j')||isequal(MaxIndex_j,MinIndex_j)% no possibility of j pairs
     set(handles.ListPairMode,'Value',1)
-    set(handles.ListPairMode,'String',{'series(Di)'})
+    PairMenu={'series(Di)'};
 elseif  MaxIndex_i==1 && MaxIndex_j>1% simple series in j
-    set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)'})
+    PairMenu={'pair j1-j2';'series(Dj)'};
     if  MaxIndex_j <= 10
         set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large
     end
 else
-    set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)';'series(Di)'})%multiple choice
+    PairMenu={'pair j1-j2';'series(Dj)';'series(Di)'};%multiple choice
     if strcmp(NomTypeNc,'_1-2_1')
         set(handles.ListPairMode,'Value',3)% advise 'series(Di)'
@@ -334 +334 @@
     end
 end
+set(handles.ListPairMode,'String',PairMenu)
+
+%% set default choice of pair mode
+PairIndex=[];
+if isfield(Param,'ActionInput') && isfield(Param.ActionInput,'PairIndices')
+    PairIndex=find(strcmp(Param.ActionInput.PairIndices.ListPairMode,PairMenu));
+end
+if isempty(PairIndex)
+    if ~isfield(Param.IndexRange,'first_j')||isequal(MaxIndex_j,MinIndex_j)% no possibility of j pairs
+        PairIndex=1;
+    elseif  MaxIndex_i==1 && MaxIndex_j>1% simple series in j
+        if  MaxIndex_j <= 10
+            PairIndex=1;% advice 'pair j1-j2' except in MaxIndex_j is large
+        end
+    else
+        if strcmp(NomTypeNc,'_1-2_1')
+            PairIndex=3;% advise 'series(Di)'
+        elseif  MaxIndex_j <= 10
+            PairIndex=1;% advice 'pair j1-j2' except in MaxIndex_j is large
+        end
+    end
+end
+set(handles.ListPairMode,'Value',PairIndex);  
 
 %% indicate the min and max indices i and j on the GUI