Changeset 1089 for trunk


Ignore:
Timestamp:
Jan 19, 2021, 9:57:06 AM (17 months ago)
Author:
sommeria
Message:

cleaning of civ files, ima2vol updated

Location:
trunk/src
Files:
2 added
2 deleted
4 edited

Legend:

Unmodified
Added
Removed
  • trunk/src/check_files.m

    r1071 r1089  
    4141    'cell2tab';... %transform a Matlab cell in a character array suitable for display in a table
    4242    'check_files';...
    43     'civ';...   %function associated with the interface 'civ.fig' for PIV and spline interpolation (to be replaced by civ_series)
    44     'civ.fig';...
    45     'civ_3D';... % function associated with the interface 'civ_3D.fig' for PIV in volume (TODO: combine with civ.m)
    46     'civ_3D.fig';...
    4743    'compile';...% compile a Matlab function, create a binary in a subdirectory /bin
    4844    'copyfields';...% copy fields between two matlab structures
  • trunk/src/get_file_info.m

    r1088 r1089  
    77%      .FileType: type of file, needed as input of read_field.m
    88%               ='figure': Matlab figure
     9%               ='mat': Matlab data file
    910%               ='xml': xml file
    1011%               ='xls': Excel file
     
    191192end
    192193
    193 if ismember (FileInfo.FileType,{'image','image_DaVis','multimage','mmreader','cine_phantom','video','netcdf','civdata'})
     194if ismember (FileInfo.FileType,{'mat','image','image_DaVis','multimage','mmreader','cine_phantom','video','netcdf','civdata'})
    194195        FileInfo.FileIndexing='on'; % allow to detect file index for scanning series
    195196else
  • trunk/src/series/civ_series.m

    r1071 r1089  
    5454    addpath(fullfile(path_series,'series'))
    5555    Data=civ_input(Param);% introduce the civ parameters using the GUI civ_input
     56    %Data=civ_input_App(Param);% introduce the civ parameters using the GUI civ_input
    5657    if isempty(Data)
    5758        Data=Param;% if  civ_input has been cancelled, keep previous parameters
  • trunk/src/series/ima2vol.m

    r1071 r1089  
    137137        end
    138138        VolData.A(jfile,:,:)=Data.A;%concacene along y
    139         VolData.Coord_z(jfile)=Data.PlaneCoord(3);
     139        VolData.Coord_z(jfile)=XmlData{1}.GeometryCalib.SliceCoord(jfile,3);
    140140    end
    141141%         npx=size(Data.A,2);
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