Changeset 1136 for trunk/src/command_launch_python.m

Timestamp:

Apr 24, 2024, 11:35:22 AM (6 months ago)

Author:

augier3pi

Message:

Fix launching fluidimage

File:

• trunk/src/command_launch_python.m (modified) (1 diff)

trunk/src/command_launch_python.m

@@ -1 @@
-%'command_launch_python': creates the command strings for opening a programme in python with a Linux system('GLNX86','GLNXA64','MACI64')
+%'command_launch_python': creates the command string for launching fluidimage
 %------------------------------------------------------------------------
-% function cmd=command_launch_matlab(filelog,ActionPath,ActionName,inputxml)
+% function cmd=command_launch_python(inputxml)
 %
 %OUTPUT
-% cmd=set of system commands (char string) to write 
-                           
+% cmd=set of system commands (char string) to write
 %
 %INPUT:
-% filelog: name (char string)  of the file to collect the output in the Matlab command window
-% ActionPath:  path to the  programme to launch
-% ActionName: name of the programme to launch
-% inputxml: full name, including path, of the xml input parameter file for the programme ActionName
-% option: ='bacground' or 'cluster' depending on the launching option
+% inputxml: path of the xml input parameter file for the program fluidimage
+% option: = 'background' or 'cluster' depending on the launching option
 
-function cmd=command_launch_python(filelog,ActionPath,ActionName,inputxml)
- cmd = ['LD_LIBRARY_PATH=$(echo $LD_LIBRARY_PATH | pyp "l = x.split('':'');...' ...
-     ' l = [s for s in l if ''matlab'' not in s]; print('':''.join(l))") ' ...
-                'python -m ' ActionName ' ' inputxml];
-
-% Matlab case:
- % ThreadOption='';
-% if strcmp(option,'cluster')
-%     ThreadOption='-singleCompThread';
-%     inputxml={inputxml};% single input parameter file
-% end
-% matlab_ver = ver('MATLAB');
-% matlab_version = matlab_ver.Version;
-% cmd=[...
-%     '#!/bin/bash\n'...
-%     'source /etc/profile\n'...
-%     'module purge\n'...
-%     'module load matlab/' matlab_version '\n'...% CHOICE OF THE SAME MATLAB VERSION AS THE CURRENT MATLAB SESSION (not mandatory)
-%     'time_start=$(date +%%s)\n'...
-%     'matlab -nodisplay -nosplash -nojvm ''' ThreadOption ''' -logfile ''' filelog ''' <<END_MATLAB\n'...%launch the new Matlab session  without display
-%     'addpath(''' path_uvmat ''');\n'...
-%     'addpath(''' ActionPath ''');\n'];
-% for iprocess=1:numel(inputxml)
-%     cmd=[cmd '' ActionName  '(''' inputxml{iprocess} ''');\n'];
-% end
-% cmd=[cmd  'exit\n' 'END_MATLAB\n'];
-%     if strcmp(option,'background')
-%     cmd=[cmd ...
-%     'time_end=$(date +%%s)\n'...
-%     'echo "global time = " $(($time_end - $time_start)) >> ''' filelog '''\n'];
-%     end
-% 
-% %% case cluster:
-% % matlab_ver = ver('MATLAB');
-% %                     matlab_version = matlab_ver.Version;
-% %                     cmd=[...
-% %                         '#!/bin/bash\n'...
-% %                         'source /etc/profile\n'...
-% %                         'module purge\n'...
-% %                         'module load matlab/' matlab_version '\n'...% CHOICE OF CURRENT MATLAB VERSION
-% %                         'matlab -nodisplay -nosplash -nojvm -singleCompThread -logfile ''' filelog{iprocess} ''' <<END_MATLAB\n'...% open a new Matlab session without display
-% %                         'addpath(''' path_series ''');\n'...
-% %                         'addpath(''' ActionPath ''');\n'...
-% %                         '' ActionName  '(''' filexml{iprocess} ''');\n'...% launch the Matlab function selected by the GUI 'series'
-% %                         'exit\n'...
-% %                         'END_MATLAB\n'];
-% %                 end
-
-
+function cmd=command_launch_python(inputxml)
+    cmd = ['python -m fluidimage.run_from_xml ' inputxml];
+end