Changeset 1190

Timestamp:

Dec 18, 2025, 6:47:16 PM (2 months ago)

Author:

sommeria

Message:

file relabeling corrected for sub_background

File:

• trunk/src/series/sub_background.m (modified) (4 diffs)

trunk/src/series/sub_background.m

@@ -246 +246 @@
 
 %% File relabeling documented by the xml file
-CheckRelabel=isfield(Param,'FileSeries' );
+CheckRelabel=isfield(Param.IndexRange,'Relabel' )&& Param.IndexRange.Relabel;%=true for index relabeling (PCO);
 
 %% Input file info
 if CheckRelabel
-    [RootFileOut,frame_index]=index2filename(Param.FileSeries,Param.IndexRange.first_i,j_indices(1),NbField_j);
+    XmlFileName=find_imadoc(RootPath,SubDir);
+    if ~isempty(XmlFileName)
+        XmlData=imadoc2struct(XmlFileName);%read the time from XmlFileName
+    end
+   % RootFileOut=index2filename(XmlData.FileSeries,1,1,MaxIndex_j);
+    [RootFileOut,frame_index]=index2filename(XmlData.FileSeries,Param.IndexRange.first_i,j_indices(1),NbField_j);
     FirstFileName=fullfile(RootPath,SubDir,RootFileOut);
 else
@@ -315 +320 @@
         %filename=filecell{1,ifile};
         if CheckRelabel
-            [filename,FrameIndex]=index2filename(Param.FileSeries,i_indices(ifile),j_indices(ifile),NbField_j);
+            [filename,FrameIndex]=index2filename(XmlData.FileSeries,i_indices(ifile),j_indices(ifile),NbField_j);
              filename=fullfile(RootPath,SubDir,filename);
         else
@@ -340 +345 @@
         %write result file
         if ~isequal(Param.ActionInput.SaturationValue,0)
-            C=levels(Acor,Param.ActionInput.SaturationValue);
+            he=levels(Acor,Param.ActionInput.SaturationValue);
             imwrite(C,newname,'BitDepth',16); % save the new image
         else
@@ -370 +375 @@
                 ifile=indselect(j_slice,ifield+iburst+step*halfnbaver);
                 if CheckRelabel
-                    [filename,FrameIndex]=index2filename(Param.FileSeries,i_indices(ifile),j_indices(ifile),NbField_j);
+                    [filename,FrameIndex]=index2filename(XmlData.FileSeries,i_indices(ifile),j_indices(ifile),NbField_j);
                     filename=fullfile(RootPath,SubDir,filename);
                 else