Changeset 557

Timestamp:

Oct 19, 2012, 5:26:57 PM (12 years ago)

Author:

sommeria

Message:

functions updated to fit with new conventions

Location:

trunk/src/transform_field

Files:

• im_levels.m (modified) (1 diff)
• phys.m (modified) (1 diff)
• remove_background.m (modified) (2 diffs)
• remove_particles.m (modified) (1 diff)

trunk/src/transform_field/im_levels.m

@@ -1 @@
-function DataOut=im_levels(DataIn,Calib)
+function DataOut=im_levels(DataIn)
+%% set GUI config: no action defined
+DataOut=[];  %default  output field
+if strcmp(DataIn,'*')
+    return
+end
 %-----------------------------------------------
 %parameters

trunk/src/transform_field/phys.m

@@ -25 +25 @@
 %            'D_i' if '.Role='vector_x,...',
 %              'scalar', else (thenno change except scale factor)
-%% set GUI config
+%% set GUI config if DataIn='*'
 DataOut=[];
 DataOut_1=[]; %default second  output field
 if strcmp(DataIn,'*')
     if isfield(XmlData,'GeometryCalib')&& isfield(XmlData.GeometryCalib,'CoordUnit')
-        DataOut.CoordUnit=XmlData.GeometryCalib.CoordUnit;
+        DataOut.CoordUnit=XmlData.GeometryCalib.CoordUnit;% states that the output is in unit defined by GeometryCalib, then erased all projection objects with different units
     end
     return

trunk/src/transform_field/remove_background.m

@@ -1 @@
-function DataOut=remove_particles(DataIn,Calib)
+function DataOut=remove_background(DataIn)
 %-----------------------------------------------
+%% set GUI config: no action defined
+DataOut=[];  %default  output field
+if strcmp(DataIn,'*')
+    return
+end
+
 %parameters
 threshold=200
@@ -9 +15 @@
 
 %BACKGROUND LEVEL
-Atype=class(DataIn.A)
+Atype=class(DataIn.A);
 A=double(DataIn.A);
 Backg=zeros(size(A));

trunk/src/transform_field/remove_particles.m

@@ -1 @@
-function DataOut=remove_particles(DataIn,Calib)
+function DataOut=remove_particles(DataIn)
 %-----------------------------------------------
+%% set GUI config: no action defined
+DataOut=[];  %default  output field
+if strcmp(DataIn,'*')
+    return
+end
+
 %parameters
-threshold=200
+threshold=200;
 nblock_x=30;%size of image subblocks for analysis
 nblock_y=30;