Index: /trunk/src/browse_data.m =================================================================== --- /trunk/src/browse_data.m (revision 569) +++ /trunk/src/browse_data.m (revision 570) @@ -92,5 +92,6 @@ set(handles.CreateMirror,'String','create_mirror') end - SourceDir_Callback([],[], handles) + scan_campaign(handles,Campaign) +% SourceDir_Callback([],[], handles) set(handles.edit_xml,'Visible','off') set(handles.HELP,'Visible','off') @@ -177,13 +178,13 @@ %------------------------------------------------------------------------ -function SourceDir_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -set(handles.SourceDir,'BackgroundColor',[1 1 0]) +function scan_campaign(handles,Campaign) +%------------------------------------------------------------------------ +%set(handles.SourceDir,'BackgroundColor',[1 1 0]) drawnow -SourceDir=get(handles.SourceDir,'String'); -MirrorDir=get(handles.MirrorDir,'String'); +%SourceDir=get(handles.SourceDir,'String'); +%MirrorDir=get(handles.MirrorDir,'String'); ExpName={''}; -if exist(SourceDir,'dir') - hdir=dir(SourceDir); %list files and dirs +if exist(Campaign,'dir') + hdir=dir(Campaign); %list files and dirs idir=0; for ilist=1:length(hdir) @@ -193,21 +194,14 @@ idir=idir+1; ExpName{idir}=hdir(ilist).name; - mirror=fullfile(MirrorDir,ExpName{idir}); - if ~exist(mirror,'dir') - mkdir(mirror) - end end - % look for the list of 'devices' - else - %warning for isolated files end end set(handles.ListExperiments,'String',[{'*'};ExpName']) set(handles.ListExperiments,'Value',1) - ListExperiments_Callback(hObject, eventdata, handles) -else - msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) -end -set(handles.SourceDir,'BackgroundColor',[1 1 1]) + ListExperiments_Callback([],[], handles) +else + msgbox_uvmat('ERROR',['The input ' Campaign ' is not a directory']) +end +%set(handles.SourceDir,'BackgroundColor',[1 1 1]) @@ -233,15 +227,17 @@ idir=0; for ilist=1:length(hdir) - if ~isequal(hdir(ilist).name(1),'.') - source=fullfile(SourcePath,ListExperiments{iexp},hdir(ilist).name); - mirror=fullfile(MirrorPath,ListExperiments{iexp},hdir(ilist).name); - if ~exist(mirror) - system(['ln -s ' source ' ' mirror]) + if ~isequal(hdir(ilist).name(1),'.') + source=fullfile(SourcePath,ListExperiments{iexp},hdir(ilist).name); + if ~isempty(MirrorPath) + mirror=fullfile(MirrorPath,ListExperiments{iexp},hdir(ilist).name); + if ~exist(mirror) + system(['ln -s ' source ' ' mirror]) + end + end + check_list=strcmp(hdir(ilist).name,ListDevices); + if isempty(find(check_list)) + ListDevices=[ListDevices;hdir(ilist).name]; + end end - check_list=strcmp(hdir(ilist).name,ListDevices); - if isempty(find(check_list)) - ListDevices=[ListDevices;hdir(ilist).name]; - end - end end end Index: /trunk/src/check_files.m =================================================================== --- /trunk/src/check_files.m (revision 569) +++ /trunk/src/check_files.m (revision 570) @@ -32,4 +32,6 @@ svn_info.status=[]; list_fct={... + 'browse_data';...% function for scanning directories in a project/campaign + 'browse_data.fig';...% GUI corresponding to dataview 'calc_field_interp';...% defines fields (velocity, vort, div...) from civx data and calculate them 'calc_field_tps';...% defines fields (velocity, vort, div...) and calculate them @@ -45,6 +47,4 @@ 'create_grid';...% called by the GUI geometry_calib to create a physical grid 'create_grid.fig';...% GUI corresponding to create_grid.m - 'datatree_browser';...% function for scanning directories in a project - 'datatree_browser.fig';...% GUI corresponding to dataview 'delete_object';...%delete a projection object, defined by its index in the Uvmat list or by its graphic handle 'displ_uvmat';... Index: unk/src/update_project.m =================================================================== --- /trunk/src/update_project.m (revision 569) +++ (revision ) @@ -1,829 +1,0 @@ -%'update_project': function for scanning directories in a campaign -%------------------------------------------------------------------------ -% function varargout = series(varargin) -% associated with the GUI update_project.fig - -%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA -% Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. -%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA -% This file is part of the toolbox UVMAT. -% -% UVMAT is free software; you can redistribute it and/or modify -% it under the terms of the GNU General Public License as published by -% the Free Software Foundation; either version 2 of the License, or -% (at your option) any later version. -% -% UVMAT is distributed in the hope that it will be useful, -% but WITHOUT ANY WARRANTY; without even the implied warranty of -% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -% GNU General Public License (file UVMAT/COPYING.txt) for more details. -%AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA - -function varargout = update_project(varargin) - -% Last Modified by GUIDE v2.5 15-Feb-2013 19:22:23 - -% Begin initialization code - DO NOT EDIT -gui_Singleton = 1; -gui_State = struct('gui_Name', mfilename, ... - 'gui_Singleton', gui_Singleton, ... - 'gui_OpeningFcn', @update_project_OpeningFcn, ... - 'gui_OutputFcn', @update_project_OutputFcn, ... - 'gui_LayoutFcn', [] , ... - 'gui_Callback', []); -if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback','once')) - gui_State.gui_Callback = str2func(varargin{1}); -end - -if nargout - [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); -else - gui_mainfcn(gui_State, varargin{:}); -end -% End initialization code - DO NOT EDIT - -%------------------------------------------------------------------------ -% --- Executes just before update_project is made visible. -function update_project_OpeningFcn(hObject, eventdata, handles, RootXml, SubCampaignTst,GeometryCalib) -%------------------------------------------------------------------------ -% Choose default command line output for update_project -handles.output = 'Cancel'; - -% Update handles structure -guidata(hObject, handles); -testCancel=1; -testinputstring=0; -icontype='quest';%default question icon (text input asked) - -% Determine the position of the dialog - centered on the screen -FigPos=get(0,'DefaultFigurePosition'); -OldUnits = get(hObject, 'Units'); -set(hObject, 'Units', 'pixels'); -OldPos = get(hObject,'Position'); -FigWidth = OldPos(3); -FigHeight = OldPos(4); -ScreenUnits=get(0,'Units'); -set(0,'Units','pixels'); -ScreenSize=get(0,'ScreenSize'); -set(0,'Units',ScreenUnits); - -FigPos(1)=1/2*(ScreenSize(3)-FigWidth); -FigPos(2)=2/3*(ScreenSize(4)-FigHeight); -FigPos(3:4)=[FigWidth FigHeight]; -set(hObject, 'Position', FigPos); -set(hObject, 'Units', OldUnits); - -% % Show a question icon from dialogicons.mat - variables questIconData and questIconMap -% load dialogicons.mat -% eval(['IconData=' icontype 'IconData;']) -% eval(['IconCMap=' icontype 'IconMap;']) -% questIconMap(256,:) = get(handles.figure1, 'Color'); -% Img=image(IconData, 'Parent', handles.axes1); -% set(handles.figure1, 'Colormap', IconCMap); -% set(handles.axes1, ... -% 'Visible', 'off', ... -% 'YDir' , 'reverse' , ... -% 'XLim' , get(Img,'XData'), ... -% 'YLim' , get(Img,'YData') ... -% ); -if exist('GeometryCalib','var') - DataviewData.GeometryCalib=GeometryCalib; - set(hObject,'UserData',DataviewData) -end -if exist('SubCampaignTst','var') && isequal(SubCampaignTst,'y') - set(handles.SubCampaignTest,'Value',1); -end -if exist('RootXml','var') - RootDir=fileparts(RootXml); - [s,Heading]=xml2struct(RootXml);%read the xml file - if isfield(s,'SourceDir') - set(handles.SourceDir,'String',s.SourceDir);%display the source dir if a mirror has been opened - set(handles.MirrorDir,'String',RootDir);%display the opened mirror dir - set(handles.CreateMirror,'String','update_mirror') - else %a source dir has been opened - set(handles.SourceDir,'String',RootDir); - set(handles.CreateMirror,'String','create_mirror') - end - SourceDir_Callback([],[], handles) - % set(handles.clean_civ_cmx,'Visible','off') - set(handles.edit_xml,'Visible','off') - set(handles.HELP,'Visible','off') - set(handles.OK,'Visible','on') - set(handles.Cancel,'Visible','on') - set(handles.figure,'WindowStyle','modal')% Make% Make the GUI modal - set(hObject,'Visible','on') - drawnow -% RootDirectory_Callback(hObject, eventdata, handles) - % UIWAIT makes translate_points wait for user response (see UIRESUME) - uiwait(handles.figure); -end - -%------------------------------------------------------------------------ -% --- Outputs from this function are returned to the command line. -function varargout = update_project_OutputFcn(hObject, eventdata, handles) -%------------------------------------------------------------------------ -% Get default command line output from handles structure -varargout{1} = handles.output; -%delete(handles.figure) - -%------------------------------------------------------------------------ -% --- Executes on button press in CreateMirror. -function CreateMirror_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -CurrentDir=fileparts(get(handles.SourceDir,'String')); -if ~exist(CurrentDir,'dir') - CurrentDir=''; -end -SourceDir=uigetdir(CurrentDir,'pick up the source project directory'); %file browser -if isequal(SourceDir,0) - return -else -set(handles.SourceDir,'String',SourceDir) -end -drawnow -[SourcePath,ProjectName]=fileparts(SourceDir); -MirrorRoot=uigetdir(CurrentDir,'path to the mirror directory'); %file browser -if isempty(MirrorRoot) - return -else -MirrorDir=fullfile(MirrorRoot,[ProjectName '.mirror']); -end -if ~exist(MirrorDir,'dir') - mkdir(MirrorDir) -end -MirrorDoc.SourceDir=SourceDir; -t=struct2xml(MirrorDoc); -set(t,1,'name','DataTree'); -save(t,fullfile(MirrorDir,[ProjectName '.xml'])) -set(handles.MirrorDir,'String',MirrorDir) - -update_mirror(SourceDir,MirrorDir) -%SourceDir_Callback(hObject, eventdata, handles) - -% RootDirectory_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -% --- Executes on button press in open_SubCampaign. -function UpdateMirror_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -MirrorDir=get(handles.MirrorDir,'String'); -menu={'*.xml', ' (*.xml)'; - '*.xml', '.xml files '; ... - '*.*', 'All Files (*.*)'}; -[MirrorXml, PathName] = uigetfile( menu, 'Pick a xml file',MirrorDir); -set(handles.MirrorDir,'String',fullfile(PathName,regexprep(Mirrorxml,'.xml$','.mirror'))) -MirrorDir_Callback(hObject, eventdata, handles) - - -%------------------------------------------------------------------------ -function MirrorDir_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -MirrorDir=get(handles.MirrorDir,'String'); -[tild,MirrorName]=fileparts(MirrorDir); -s=xml2struct(fullfile(MirrorDir,[MirrorName '.xml'])); -set(handles.SourceDir,'String',s.SourceDir) -SourceDir_Callback([],[], handles) -%update_mirror(s.SourceDir, MirrorDir) - - -%------------------------------------------------------------------------ -function update_mirror(SourceDir,MirrorDir) -%------------------------------------------------------------------------ -SourceDir_Callback([],[], handles) - -%------------------------------------------------------------------------ -function SourceDir_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -set(handles.SourceDir,'BackgroundColor',[1 1 0]) -drawnow -SourceDir=get(handles.SourceDir,'String'); -MirrorDir=get(handles.MirrorDir,'String'); -ExpName={''}; -if exist(SourceDir,'dir') - hdir=dir(SourceDir); %list files and dirs - idir=0; - for ilist=1:length(hdir) - if hdir(ilist).isdir - dirname=hdir(ilist).name; - if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') - idir=idir+1; - ExpName{idir}=hdir(ilist).name; - mirror=fullfile(MirrorDir,ExpName{idir}); - if ~exist(mirror,'dir') - mkdir(mirror) - end - end - % look for the list of 'devices' - else - %warning for isolated files - end - end - set(handles.ListExperiments,'String',[{'*'};ExpName']) - set(handles.ListExperiments,'Value',1) - ListExperiments_Callback(hObject, eventdata, handles) -else - msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) -end -set(handles.SourceDir,'BackgroundColor',[1 1 1]) - - -%------------------------------------------------------------------------ -% --- Executes on selection change in ListExperiments. - function ListExperiments_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -SourcePath=get(handles.SourceDir,'String'); -MirrorPath=get(handles.MirrorDir,'String'); -ListExperiments=get(handles.ListExperiments,'String'); -ListDevices={}; -list_val=get(handles.ListExperiments,'Value'); -if isequal(list_val(1),1) - ListExperiments=ListExperiments(2:end); %choose all experiments - testList=1; - set(handles.ListExperiments,'Value',1) -else - ListExperiments=ListExperiments(list_val);%choose selected experiments - testList=0; -end -for iexp=1:numel(ListExperiments) - hdir=dir(fullfile(SourcePath,ListExperiments{iexp})); %list files and dirs - idir=0; - for ilist=1:length(hdir) - if ~isequal(hdir(ilist).name(1),'.') - source=fullfile(SourcePath,ListExperiments{iexp},hdir(ilist).name); - mirror=fullfile(MirrorPath,ListExperiments{iexp},hdir(ilist).name); - if ~exist(mirror) - system(['ln -s ' source ' ' mirror]) - end - check_list=strcmp(hdir(ilist).name,ListDevices); - if isempty(find(check_list)) - ListDevices=[ListDevices;hdir(ilist).name]; - end - end - end -end -set(handles.ListDevices,'String',ListDevices) -% if hdir(ilist).isdir -% dirname=hdir(ilist).name; -% if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') -% idir=idir+1; -% ExpName{idir}=hdir(ilist).name; -% mirror=fullfile(MirrorDir,ExpName{idir}); -% if ~exist(mirror,'dir') -% mkdir(mirror) -% end -% end -% % look for the list of 'devices' -% else -% %warning for isolated files -% end -% end -% set(handles.ListExperiments,'String',[{'*'};ExpName']) -% set(handles.ListExperiments,'Value',1) -% ListExperiments_Callback(hObject, eventdata, handles) - - -% set(handles.ListDevices,'Value',1) -% set(handles.ListRecords,'Value',1) -% set(handles.ListXml,'Value',1) -% [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,{},{}); -% set(handles.ListRecords,'String',[{'*'};ListRecords']) -% set(handles.ListDevices,'String',[{'*'};ListDevices']) -% set(handles.ListXml,'String',[{'*'};ListXml']) -% if testList -% DataviewData=get(handles.figure,'UserData'); -% DataviewData.List=List; -% set(handles.figure,'UserData',DataviewData) -% end -% set(handles.CampaignDoc,'Visible','on') -% set(handles.edit_xml,'Visible','on') - -%------------------------------------------------------------------------ -% --- Executes on button press in update_headings. -function ListDevices_Callback(hObject, eventdata, handles) -CurrentPath=get(handles.SourceDir,'String'); -ListExperiments=get(handles.ListExperiments,'String'); -list_val=get(handles.ListExperiments,'Value'); -if isequal(list_val,1) - ListExperiments=ListExperiments(2:end); -else - ListExperiments=ListExperiments(list_val); -end -set(handles.ListRecords,'Value',1) -set(handles.ListXml,'Value',1) -ListDevices=get(handles.ListDevices,'String'); -list_val=get(handles.ListDevices,'Value'); -if isequal(list_val,1) - ListDevices=ListDevices(2:end); -else - ListDevices=ListDevices(list_val); -end -[ListDevices,ListRecords,ListXml]=ListDir(CurrentPath,ListExperiments,ListDevices,{}); -set(handles.ListRecords,'String',[{'*'};ListRecords']) -set(handles.ListXml,'String',[{'*'};ListXml']) - - -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - - - -%------------------------------------------------------------------------ -% --- Executes on selection change in ListRecords. -function ListRecords_Callback(hObject, eventdata, handles) -Value=get(handles.ListRecords,'Value'); -if isequal(Value(1),1) - set(handles.ListRecords,'Value',1); -end - -%------------------------------------------------------------------------ -% --- Executes on button press in CampaignDoc. -function CampaignDoc_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file') -if ~isequal(answer{1},'OK') - return -end -set(handles.ListExperiments,'Value',1) -ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories -DataviewData=get(handles.figure,'UserData'); -List=DataviewData.List; -Currentpath=get(handles.SourceDir,'String'); -[Currentpath,Campaign,DirExt]=fileparts(Currentpath); -Campaign=[Campaign DirExt]; -t=xmltree; -t=set(t,1,'name','CampaignDoc'); -t = attributes(t,'add',1,'source','directory'); -SubCampaignTest=get(handles.SubCampaignTest,'Value'); -root_uid=1; -if SubCampaignTest - %TO DO open an exoiting xml doc - [t,root_uid]=add(t,1,'element','SubCampaign'); - t =attributes(t,'add',root_uid,'DirName',Campaign); -end -for iexp=1:length(List.Experiment) - set(handles.ListExperiments,'Value',iexp+1) - drawnow - test_mod=0; - [t,uid_exp]=add(t,root_uid,'element','Experiment'); - t = attributes(t,'add',uid_exp,'i',num2str(iexp)); - ExpName=List.Experiment{iexp}.name; - t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name); - - if isfield(List.Experiment{iexp},'Device') - for idevice=1:length(List.Experiment{iexp}.Device) - [t,uid_device]=add(t,uid_exp,'element','Device'); - DeviceName=List.Experiment{iexp}.Device{idevice}.name; - t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name); - if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') - for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) - FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; - [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest); - if test - [List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated'] - end - if isequal(Title,'ImaDoc') - [t,uid_xml]=add(t,uid_device,'element','ImaDoc'); - t = attributes(t,'add',uid_xml,'source','file'); - [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}); - end - end - elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') - for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) - RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; - [t,uid_record]=add(t,uid_device,'element','Record'); - t = attributes(t,'add',uid_record,'DirName',RecordName); - if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') - for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) - FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; - [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest); - if test - [FileName ' , Heading updated'] - end - [t,uid_xml]=add(t,uid_record,'element','ImaDoc'); - t = attributes(t,'add',uid_xml,'source','file'); - [t]=add(t,uid_xml,'chardata',FileName); - end - end - end - end - end - end -end -set(handles.ListExperiments,'Value',1) -outputdir=get(handles.SourceDir,'String'); -[path,dirname]=fileparts(outputdir); -outputfile=fullfile(outputdir,[dirname '.xml']); -%campaigndoc(t); -save(t,outputfile) - -%------------------------------------------------------------------------ -% --- Executes on button press in CampaignDoc. -function edit_xml_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -CurrentPath=get(handles.SourceDir,'String'); -%[CurrentPath,Name,Ext]=fileparts(CurrentDir); -ListExperiments=get(handles.ListExperiments,'String'); -Value=get(handles.ListExperiments,'Value'); -if ~isequal(Value,1) - ListExperiments=ListExperiments(Value); -end -ListDevices=get(handles.ListDevices,'String'); -Value=get(handles.ListDevices,'Value'); -if ~isequal(Value,1) - ListDevices=ListDevices(Value); -end -ListRecords=get(handles.ListRecords,'String'); -Value=get(handles.ListRecords,'Value'); -if ~isequal(Value,1) - ListRecords=ListRecords(Value); -end -[ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); -ListXml=get(handles.ListXml,'String'); -Value=get(handles.ListXml,'Value'); -set(handles.ListXml,'Value',Value(1)); -if isequal(Value(1),1) - msgbox_uvmat('ERROR','an xml file needs to be selected') - return -else - XmlName=ListXml{Value(1)}; -end -for iexp=1:length(List.Experiment) - ExpName=List.Experiment{iexp}.name; - if isfield(List.Experiment{iexp},'Device') - for idevice=1:length(List.Experiment{iexp}.Device) - DeviceName=List.Experiment{iexp}.Device{idevice}.name; - if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') - for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) - FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} - if isequal(FileName,XmlName) - editxml(fullfile(CurrentPath,ExpName,DeviceName,FileName)); - return - end - end - elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') - for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) - RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; - if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') - for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) - FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; - if isequal(FileName,XmlName) - editxml(fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName)); - return - end - end - end - end - end - end - end -end - - - -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% CurrentPath/Campaign: root directory -function [Title,test_mod]=check_heading(Currentpath,Campaign,Experiment,Device,Record,xmlname,testSubCampaign) - - %Shema for Heading: -% Campaign -% (SubCampaign) -% Experiment -% Device -% (Record) -% ImageName -% DateExp -% old: %Project: suppressed ( changed to Campaign) - %Exp: suppressed (changed to experiment) - %ImaNames: changed to ImageName -if exist('Record','var') && ~isempty(Record) - xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,Record,xmlname); - testrecord=1; -else - xmlfullname=fullfile(Currentpath,Campaign,Experiment,Device,xmlname); - testrecord=0; -end -if ~exist('testSubCampaign','var') - testSubCampaign=0; -end -if testSubCampaign - SubCampaign=Campaign; - [Currentpath,Campaign,DirExt]=fileparts(Currentpath); - Campaign=[Campaign DirExt]; -end -test_mod=0; %test for the modification of the xml file -t_device=xmltree(xmlfullname); -Title=get(t_device,1,'name'); -uid_child=children(t_device,1); -Heading_old=[]; -uidheading=0; -for ilist=1:length(uid_child) - name=get(t_device,uid_child(ilist),'name'); - if isequal(name,'Heading') - uidheading=uid_child(ilist); - end -end -if uidheading - subt=branch(t_device,uidheading); - Heading_old=convert(subt); -else - return % do not edit xml files without element 'Heading' -end -if ~(isfield(Heading_old,'Campaign')&& isequal(Heading_old.Campaign,Campaign)) - test_mod=1; -end -Heading.Campaign=Campaign; -if testSubCampaign - if ~(isfield(Heading_old,'SubCampaign')&& isequal(Heading_old.SubCampaign,SubCampaign)) - test_mod=1; - end - Heading.SubCampaign=SubCampaign; -end -if ~(isfield(Heading_old,'Experiment')&& isequal(Heading_old.Experiment,Experiment)) - test_mod=1; -end -Heading.Experiment=Experiment; -if ~(isfield(Heading_old,'Device')&& isequal(Heading_old.Device,Device)) - test_mod=1; -end -Heading.Device=Device; -if testrecord - if ~(isfield(Heading_old,'Record')&& isequal(Heading_old.Record,Record)) - test_mod=1; - end - Heading.Record=Record; -end -if isfield(Heading_old,'ImaNames') - test_mod=1; - if ~isempty(Heading_old.ImaNames) - Heading.ImageName=Heading_old.ImaNames; - end -end -if isfield(Heading_old,'ImageName')&& ~isempty(Heading_old.ImageName) - Heading.ImageName=Heading_old.ImageName; -end -if isfield(Heading_old,'DateExp')&& ~isempty(Heading_old.DateExp) - Heading.DateExp=Heading_old.DateExp; -end -if test_mod && uidheading - uid_child=children(t_device,uidheading); - t_device=delete(t_device,uid_child); - t_device=struct2xml(Heading,t_device,uidheading); - backupfile=xmlfullname; - testexist=2; - while testexist==2 - backupfile=[backupfile '~']; - testexist=exist(backupfile,'file'); - end - [success,message]=copyfile(xmlfullname,backupfile);%make backup - if isequal(success,1) - delete(xmlfullname) - else - return - end - save(t_device,xmlfullname) -end - -%------------------------------------------------------------------------ -% --- Executes on button press in HELP. -function HELP_Callback(hObject, eventdata, handles) -path_to_uvmat=which ('uvmat')% check the path of uvmat -pathelp=fileparts(path_to_uvmat); -helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); -if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') -else -web([helpfile '#dataview']) -end - - - -% --- Executes on selection change in ListXml. -function ListXml_Callback(hObject, eventdata, handles) -Value=get(handles.ListXml,'Value'); -if isequal(Value(1),1) - set(handles.ListXml,'Value',1); -end - - -% --- Executes on button press in clean_civ_cmx. -function clean_civ_cmx_Callback(hObject, eventdata, handles) -message='this function will delete all files with extensions .log, .bat, .cmx,.cmx2,.errors in the input directory(ies)'; -answer=msgbox_uvmat('INPUT_Y-N',message); -if ~isequal(answer,'Yes') - return -end -set(handles.ListExperiments,'Value',1) -ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories -DataviewData=get(handles.figure,'UserData') -List=DataviewData.List; -Currentpath=get(handles.SourceDir,'String'); -[Currentpath,Campaign,DirExt]=fileparts(Currentpath); -Campaign=[Campaign DirExt]; -SubCampaignTest=get(handles.SubCampaignTest,'Value'); -nbdelete_tot=0; -for iexp=1:length(List.Experiment) - set(handles.ListExperiments,'Value',iexp+1) - drawnow - test_mod=0; - ExpName=List.Experiment{iexp}.name; - nbdelete=0; - if isfield(List.Experiment{iexp},'Device') - for idevice=1:length(List.Experiment{iexp}.Device) - DeviceName=List.Experiment{iexp}.Device{idevice}.name; - if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') - currentdir=fullfile(Currentpath,Campaign,ExpName,DeviceName); - hdir=dir(currentdir); %list files and dirs - idir=0; - for ilist=1:length(hdir) - if hdir(ilist).isdir - dirname=hdir(ilist).name; - if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0') - CivDir=fullfile(currentdir,dirname) - hCivDir=dir(CivDir); - for ilist=1:length(hCivDir) - FileName=hCivDir(ilist).name; - [dd,ff,Ext]=fileparts(FileName); - if isequal(Ext,'.log')||isequal(Ext,'.bat')||isequal(Ext,'.cmx')||isequal(Ext,'.cmx2')|| isequal(Ext,'.errors') - delete(fullfile(CivDir,FileName)) - nbdelete=nbdelete+1; - end - end - end - end - end - elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') - for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) - RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; - if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') - 'look at subdirectories' - end - end - end - end - end - display([num2str(nbdelete) ' files deleted']) - nbdelete_tot=nbdelete_tot+nbdelete; -end -msgbox_uvmat('CONFIRMATION',['END: ' num2str(nbdelete_tot) ' files deleted by clean_civ_cmx']) -set(handles.ListExperiments,'Value',1) - - -% --- Executes on button press in OK. -function OK_Callback(hObject, eventdata, handles) -%------------------------------------------------------------------------ -CurrentPath=get(handles.SourceDir,'String'); -ListExperiments=get(handles.ListExperiments,'String'); -IndicesExp=get(handles.ListExperiments,'Value'); -if ~isequal(IndicesExp,1) - ListExperiments=ListExperiments(IndicesExp); -end -ListDevices=get(handles.ListDevices,'String'); -Value=get(handles.ListDevices,'Value'); -if isequal(Value,1) - msgbox_uvmat('ERROR','manually select in the GUI dataview the device being calibrated') - return -else - ListDevices=ListDevices(Value); -end -ListRecords=get(handles.ListRecords,'String'); -Value=get(handles.ListRecords,'Value'); -if ~isequal(Value,1) - ListRecords=ListRecords(Value); -end -[ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); -ListXml=get(handles.ListXml,'String'); -Value=get(handles.ListXml,'Value'); -if isequal(Value,1) - msgbox_uvmat('ERROR','you need to select in the GUI dataview the xml files to edit') - return -else - ListXml=ListXml(Value); -end - -%update all the selected xml files -DataviewData=get(handles.figure,'UserData'); -% answer=msgbox_uvmat('INPUT_Y-N',[num2str(length(Value)) ' xml files for device ' ListDevices{1} ' will be refreshed with ' ... -% DataviewData.GeometryCalib.CalibrationType ' calibration data']) -% if ~isequal(answer,'Yes') -% return -% end -%List.Experiment{1}.Device{1} -%List.Experiment{2}.Device{1} -for iexp=1:length(List.Experiment) - ExpName=List.Experiment{iexp}.name; - set(handles.ListExperiments,'Value',IndicesExp(iexp)); - if isfield(List.Experiment{iexp},'Device') - for idevice=1:length(List.Experiment{iexp}.Device) - DeviceName=List.Experiment{iexp}.Device{idevice}.name; - if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') - for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) - FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; - for ilistxml=1:length(ListXml) - if isequal(FileName,ListXml{ilistxml}) - set(handles.ListXml,'Value',Value(ilistxml)) - drawnow - xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,FileName); - update_imadoc(DataviewData.GeometryCalib,xmlfullname) - display([xmlfullname ' updated']) - break - end - end - end - elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') - for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) - RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; - if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') - for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) - FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; - for ilistxml=1:length(ListXml) - if isequal(FileName,ListXml{ilistxml}) - set(handles.ListXml,'Value',Value(ilistxml)) - drawnow - xmlfullname=fullfile(CurrentPath,ExpName,DeviceName,RecordName,FileName); - update_imadoc(DataviewData.GeometryCalib,xmlfullname) - display([xmlfullname ' updated']) - break - end - end - end - end - end - end - end - end -end -set(handles.ListXml,'Value',Value) -% -% -% -% -% -% -% -% CurrentPath=get(handles.SourceDir,'String');%= get(hObject,'String'); -% ListExperiments=get(handles.ListExperiments,'String'); -% Value=get(handles.ListExperiments,'Value'); -% if ~isequal(Value,1) -% ListExperiments=ListExperiments(Value); -% end -% ListDevices=get(handles.ListDevices,'String'); -% Value=get(handles.ListDevices,'Value'); -% if isequal(Value,1) -% msgbox_uvmat('ERROR','manually select in the GUI update_project the device being calibrated') -% return -% else -% ListDevices=ListDevices(Value); -% end -% ListRecords=get(handles.ListRecords,'String'); -% Value=get(handles.ListRecords,'Value'); -% if ~isequal(Value,1) -% ListRecords=ListRecords(Value); -% end -% [ListDevices,ListRecords,ListXml,List]=ListDir(CurrentPath,ListExperiments,ListDevices,ListRecords); -% ListXml=get(handles.ListXml,'String'); -% Value=get(handles.ListXml,'Value'); -% if isequal(Value,1) -% msgbox_uvmat('ERROR','you need to select in the GUI update_project the xml files to edit') -% return -% else -% ListXml=ListXml(Value); -% end -% handles.output.CurrentPath=CurrentPath; -% handles.output.ListExperiments=ListExperiments; -% handles.output.ListDevices=ListDevices; -% handles.output.ListRecords=ListRecords; -% handles.output.ListXml=ListXml; -% handles.output.List=List; -handles.output ='OK, Calibration replicated'; -guidata(hObject, handles);% Update handles structure -uiresume(handles.figure); - -% --- Executes on button press in Cancel. -function Cancel_Callback(hObject, eventdata, handles) -handles.output = get(hObject,'String'); -guidata(hObject, handles); % Update handles structure -% Use UIRESUME instead of delete because the OutputFcn needs -uiresume(handles.figure); - -% --- Executes when user attempts to close figure. -function figure_CloseRequestFcn(hObject, eventdata, handles) -if isequal(get(handles.figure, 'waitstatus'), 'waiting') - % The GUI is still in UIWAIT, us UIRESUME - uiresume(handles.figure); -else - % The GUI is no longer waiting, just close it - delete(handles.figure); -end - -% --- Executes on key press over figure1 with no controls selected. -function figure_KeyPressFcn(hObject, eventdata, handles) -% Check for "enter" or "escape" -if isequal(get(hObject,'CurrentKey'),'escape') - % User said no by hitting escape - handles.output = 'Cancel'; - - % Update handles structure - guidata(hObject, handles); - - uiresume(handles.figure); -end -if isequal(get(hObject,'CurrentKey'),'return') - uiresume(handles.figure); -end