| 652 | | %% display the selected field and related information |
| 653 | | if isempty(fileinput) |
| 654 | | errormsg='aborted'; |
| 655 | | else |
| 656 | | display_file_name(handles,fileinput,1) |
| 657 | | end |
| 658 | | end |
| 659 | | else |
| 660 | | % initiate the input file series and refresh the current field view: |
| 661 | | errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,1); |
| 662 | | end |
| 663 | | |
| 664 | | %% refresh the second series if relevant |
| 665 | | if ~isempty(errormsg) && get(handles.SubField,'Value') |
| 666 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| 667 | | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
| 668 | | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,tild,FileInfo,MovieObject]=find_file_series(fullfile(RootPath,SubDir),[RootFile FileIndices FileExt]); |
| 669 | | if isempty(i1_series) |
| 670 | | fileinput=uigetfile_uvmat('pick an input file for the second line',fullfile(RootPath,SubDir)); |
| 671 | | hh=dir(fileinput); |
| 672 | | if numel(hh)>1 |
| 673 | | msgbox_uvmat('ERROR','invalid input, probably a broken link'); |
| 674 | | else |
| 675 | | %% display the selected field and related information |
| 676 | | if isempty(fileinput) |
| 677 | | errormsg='aborted'; |
| 678 | | else |
| 679 | | display_file_name(handles,fileinput,2) |
| 680 | | end |
| 681 | | end |
| 682 | | else |
| 683 | | % initiate the input file series and inputfilerefresh the current field view: |
| 684 | | errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,2); |
| 685 | | end |
| 686 | | end |
| 687 | | if ~isempty(errormsg) |
| 688 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 1])% put back button color to magenta, input not succesfull |
| 689 | | end |
| 690 | | set(handles.uvmat,'Pointer','arrow')% set back the mouse pointer to arrow |
| 691 | | |
| 692 | | %------------------------------------------------------------------------ |
| 693 | | % --- Fills the edit boxes RootPath, RootFile,NomType...from an input file name 'fileinput' |
| 694 | | function errormsg=display_file_name(handles,fileinput,index) |
| 695 | | %------------------------------------------------------------------------ |
| 696 | | %% look for the input file existence |
| 697 | | errormsg='';%default |
| 698 | | if ~exist(fileinput,'file') |
| 699 | | errormsg=['input file ' fileinput ' does not exist']; |
| 700 | | msgbox_uvmat('ERROR',errormsg) |
| 701 | | return |
| 702 | | end |
| 703 | | |
| 704 | | %% define the relevant handles for the first field series (index=1) or the second file series (index=2) |
| 705 | | if ~exist('index','var') |
| 706 | | index=1; |
| 707 | | end |
| 708 | | if index==1 |
| 709 | | handles_RootPath=handles.RootPath; |
| 710 | | handles_SubDir=handles.SubDir; |
| 711 | | handles_RootFile=handles.RootFile; |
| 712 | | handles_FileIndex=handles.FileIndex; |
| 713 | | handles_NomType=handles.NomType; |
| 714 | | handles_FileExt=handles.FileExt; |
| 715 | | elseif index==2 |
| 716 | | handles_RootPath=handles.RootPath_1; |
| 717 | | handles_SubDir=handles.SubDir_1; |
| 718 | | handles_RootFile=handles.RootFile_1; |
| 719 | | handles_FileIndex=handles.FileIndex_1; |
| 720 | | handles_NomType=handles.NomType_1; |
| 721 | | handles_FileExt=handles.FileExt_1; |
| 722 | | set(handles.RootPath_1,'Visible','on') |
| 723 | | set(handles.RootFile_1,'Visible','on') |
| 724 | | set(handles.SubDir_1,'Visible','on'); |
| 725 | | set(handles.FileIndex_1,'Visible','on'); |
| 726 | | set(handles.FileExt_1,'Visible','on'); |
| 727 | | set(handles.NomType_1,'Visible','on'); |
| 728 | | set(handles.TimeName_1,'Visible','on') |
| 729 | | set(handles.TimeValue_1,'Visible','on') |
| 730 | | end |
| 731 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])% paint REFRESH button to yellow to visualise root file input |
| 732 | | set(handles.uvmat,'Pointer','watch') % set the mouse pointer to 'watch' |
| 733 | | drawnow |
| 734 | | |
| 735 | | %% detect root name, nomenclature and indices in the input file name: |
| 736 | | [FilePath,FileName,FileExt]=fileparts(fileinput); |
| 737 | | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
| 738 | | % the root name and indices may be corrected by including the first index i1 if a corresponding xml file exists |
| 739 | | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,NomType,FileInfo,MovieObject,i1,i2,j1,j2]=find_file_series(FilePath,[FileName FileExt]); |
| 740 | | FileType=FileInfo.FileType; |
| 741 | | if strcmp(FileType,'txt') |
| 742 | | try |
| 743 | | edit(fileinput) |
| 744 | | catch ME |
| 745 | | msgbox_uvmat('ERROR','invalid intput file') |
| 746 | | end |
| 747 | | return |
| 748 | | elseif strcmp(FileType,'xml') |
| 749 | | editxml(fileinput) |
| 750 | | return |
| 751 | | elseif strcmp(FileType,'figure') |
| 752 | | open(fileinput) |
| 753 | | return |
| 754 | | end |
| 755 | | |
| 756 | | %% open the file or fill the GUI uvmat according to the detected file type |
| 757 | | switch FileType |
| 758 | | case '' |
| 759 | | msgbox_uvmat('ERROR','invalid input file type') |
| 760 | | case 'txt' |
| 761 | | edit(fileinput) |
| 762 | | case 'figure' %display matlab figure |
| 763 | | hfig=open(fileinput); |
| 764 | | set(hfig,'WindowButtonMotionFcn','mouse_motion')%set mouse action functio |
| 765 | | set(hfig,'WindowButtonUpFcn','mouse_up')%set mouse click action function |
| 766 | | set(hfig,'WindowButtonUpFcn','mouse_down')%set mouse click action function |
| 767 | | case 'xml' % edit xml files |
| 768 | | t=xmltree(fileinput); |
| 769 | | % the xml file marks a project or project link, open datatree_browser |
| 770 | | if strcmp(get(t,1,'name'),'Project')&& exist(regexprep(fileinput,'.xml$',''),'dir') |
| 771 | | datatree_browser(fileinput) |
| 772 | | else % other xml file, open the xml editor |
| 773 | | editxml(fileinput); |
| 774 | | end |
| 775 | | case 'xls'% Excel file opended by editxml |
| 776 | | editxml(fileinput); |
| 777 | | otherwise |
| 778 | | set(handles_RootPath,'String',RootPath); |
| 779 | | rootname=fullfile(RootPath,SubDir,RootFile); |
| 780 | | set(handles_SubDir,'String',['/' SubDir]); |
| 781 | | set(handles_RootFile,'String',['/' RootFile]); %display the separator |
| 782 | | indices=fileinput(length(rootname)+1:end); |
| 783 | | indices(end-length(FileExt)+1:end)=[]; %remove extension |
| 784 | | set(handles_FileIndex,'String',indices); |
| 785 | | set(handles_NomType,'String',NomType); |
| 786 | | set(handles_FileExt,'String',FileExt); |
| 787 | | if index==1 |
| 788 | | % fill file index counters if the first file series is opened |
| 789 | | set(handles.i1,'String',num2str(i1)); |
| 790 | | set(handles.i2,'String',num2str(i2)); |
| 791 | | set(handles.j1,'String',num2stra(j1,NomType)); |
| 792 | | set(handles.j2,'String',num2stra(j2,NomType)); |
| 793 | | else %read the current field index to synchronise with the first series |
| 794 | | i1_s=str2num(get(handles.i1,'String')); |
| 795 | | i2_0=str2num(get(handles.i2,'String')); |
| 796 | | if ~isempty(i2_0) |
| 797 | | i2_s=i2_0; |
| 798 | | else |
| 799 | | i2_s=i2; |
| 800 | | end |
| 801 | | j1_0=stra2num(get(handles.j1,'String')); |
| 802 | | if ~isempty(j1_0) |
| 803 | | j1_s=j1_0; |
| 804 | | else |
| 805 | | j1_s=j1; |
| 806 | | end |
| 807 | | j2_0=stra2num(get(handles.j2,'String')); |
| 808 | | if ~isempty(j2_0) |
| 809 | | j2_s=j2_0; |
| 810 | | else |
| 811 | | j2_s=j2; |
| 812 | | end |
| 813 | | end |
| 814 | | |
| 815 | | % synchronise indices of the second input file if it exists |
| 816 | | if get(handles.SubField,'Value')==1% if the subfield button is activated, update the field numbers |
| 817 | | Input=read_GUI(handles.InputFile); |
| 818 | | if ~isfield(Input,'RootPath_1')||strcmp(Input.RootPath_1,'"') |
| 819 | | Input.RootPath_1=Input.RootPath; |
| 820 | | end |
| 821 | | if ~isfield(Input,'SubDir_1')||strcmp(Input.SubDir_1,'"') |
| 822 | | Input.SubDir_1=Input.SubDir; |
| 823 | | end |
| 824 | | if ~isfield(Input,'RootFile_1')||strcmp(Input.RootFile_1,'"') |
| 825 | | Input.RootFile_1=Input.RootFile; |
| 826 | | end |
| 827 | | if ~isfield(Input,'FileExt_1')||strcmp(Input.FileExt_1,'"') |
| 828 | | Input.FileExt_1=Input.FileExt; |
| 829 | | end |
| 830 | | if ~isfield(Input,'NomType_1')||strcmp(Input.NomType_1,'"') |
| 831 | | Input.NomType_1=Input.NomType; |
| 832 | | end |
| 833 | | %updtate the indices of the second field series to correspond to the newly opened one |
| 834 | | FileName_1=fullfile_uvmat(Input.RootPath_1,Input.SubDir_1,Input.RootFile_1,Input.FileExt_1,Input.NomType_1,i1_s,i2_s,j1_s,j2_s); |
| 835 | | if exist(FileName_1,'file') |
| 836 | | FileIndex_1=fullfile_uvmat('','','','',Input.NomType_1,i1_s,i2_s,j1_s,j2_s); |
| 837 | | else |
| 838 | | FileIndex_1=fullfile_uvmat('','','','',Input.NomType_1,i1,i2,j1,j2); |
| 839 | | msgbox_uvmat('WARNING','unable to synchronise the indices of the two series') |
| 840 | | end |
| 841 | | set(handles.FileIndex_1,'String',FileIndex_1) |
| 842 | | end |
| 843 | | |
| 844 | | %enable other menus |
| 845 | | set(handles.MenuOpenCampaign,'Enable','on') |
| 846 | | set(handles.MenuExport,'Enable','on') |
| 847 | | set(handles.MenuExportFigure,'Enable','on') |
| 848 | | set(handles.MenuExportMovie,'Enable','on') |
| 849 | | set(handles.MenuTools,'Enable','on') |
| 850 | | |
| 851 | | % initiate input file series and inputfilerefresh the current field view: |
| 852 | | update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,index); |
| 853 | | |
| 854 | | end |
| 855 | | |
| 856 | | %% update list of recent files in the menubar and save it for future opening |
| 857 | | MenuFile=[{get(handles.MenuFile_1,'Label')};{get(handles.MenuFile_2,'Label')};... |
| 858 | | {get(handles.MenuFile_3,'Label')};{get(handles.MenuFile_4,'Label')};{get(handles.MenuFile_5,'Label')}]; |
| 859 | | str_find=strcmp(fileinput,MenuFile); |
| 860 | | if isempty(find(str_find,1)) |
| 861 | | MenuFile=[{fileinput};MenuFile];%insert the current file if not already in the list |
| 862 | | end |
| 863 | | for ifile=1:min(length(MenuFile),5) |
| 864 | | set(handles.(['MenuFile_' num2str(ifile)]),'Label',MenuFile{ifile}); |
| 865 | | %set(handles.(['MenuFile_' num2str(ifile) '_1']),'Label',MenuFile{ifile}); |
| 866 | | end |
| 867 | | dir_perso=prefdir; |
| 868 | | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
| 869 | | if exist(profil_perso,'file') |
| 870 | | save (profil_perso,'MenuFile','RootPath','-append'); %store the file names for future opening of uvmat |
| 871 | | else |
| 872 | | save (profil_perso,'MenuFile','RootPath','-V6'); %store the file names for future opening of uvmat |
| 873 | | end |
| 874 | | |
| 875 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% paint back button to red to indicate update is finished |
| 876 | | set(handles.uvmat,'Pointer','arrow')% set back the mouse pointer to arrow |
| 877 | | |
| 878 | | |
| 879 | | %------------------------------------------------------------------------ |
| 880 | | % --- Update information about a new field series (indices to scan, timing, |
| 881 | | % calibration from an xml file, then inputfilerefresh current plots |
| 882 | | function errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,VideoObject,index) |
| 883 | | %------------------------------------------------------------------------ |
| 884 | | errormsg=''; %default error msg |
| 885 | | %% define the relevant handles depending on the index (1=first file series, 2= second file series) |
| 886 | | if ~exist('index','var') |
| 887 | | index=1; |
| 888 | | end |
| 889 | | if index==1 |
| 890 | | handles_Fields=handles.FieldName; |
| 891 | | elseif index==2 |
| 892 | | handles_Fields=handles.FieldName_1; |
| 893 | | end |
| 894 | | |
| 895 | | set(handles.FieldName,'UserData',[])% reinialize data from uvmat opening |
| 896 | | UvData=get(handles.uvmat,'UserData');%huvmat=handles of the uvmat interface |
| 897 | | UvData.NewSeries=1; %flag for REFRESH: begin a new series |
| 898 | | UvData.FileName_1='';% name of the current second field (used to detect a constant field during file scanning) |
| 899 | | UvData.FileType{index}=FileInfo.FileType; |
| 900 | | UvData.FileInfo{index}=FileInfo; |
| 901 | | UvData.i1_series{index}=i1_series; |
| 902 | | UvData.i2_series{index}=i2_series; |
| 903 | | UvData.j1_series{index}=j1_series; |
| 904 | | UvData.j2_series{index}=j2_series; |
| 905 | | set(handles.FixVelType,'Value',0); %desactivate fixed veltype |
| 906 | | if index==1 |
| 907 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| 908 | | else |
| 909 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| 910 | | end |
| 911 | | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
| 912 | | FileBase=fullfile(RootPath,RootFile); |
| 913 | | if ~exist(FileName,'file') |
| 914 | | errormsg=['input file ' FileName ' not found']; |
| 915 | | msgbox_uvmat('ERROR',errormsg); |
| 916 | | return |
| 917 | | end |
| 918 | | |
| 919 | | %% read timing and total frame number from the current file (movie files) !! may be overrid by xml file |
| 920 | | TimeUnit='';%default |
| 921 | | TimeName='';%default |
| 922 | | XmlData.Time=[];%default |
| 923 | | imainfo=[]; |
| 924 | | ColorType='falsecolor'; %default |
| 925 | | UvData.MovieObject{index}=VideoObject; |
| 926 | | if ~isempty(VideoObject)% case of video data |
| 927 | | imainfo=get(VideoObject); |
| 928 | | TimeUnit='s'; |
| 929 | | if isempty(j1_series); %frame index along i |
| 930 | | XmlData.Time=zeros(imainfo.NumberOfFrames+1,2); |
| 931 | | XmlData.Time(:,2)=(0:1/imainfo.FrameRate:(imainfo.NumberOfFrames)/imainfo.FrameRate)'; |
| 932 | | else |
| 933 | | XmlData.Time=[0;ones(size(i1_series,3)-1,1)]*(0:1/imainfo.FrameRate:(imainfo.NumberOfFrames)/imainfo.FrameRate); |
| 934 | | end |
| 935 | | %set(handles.Dt_txt,'String',['Dt=' num2str(1000/imainfo.FrameRate) 'ms']);%display the elementary time interval in millisec |
| 936 | | TimeName='video'; |
| 937 | | ColorType='truecolor'; |
| 938 | | elseif ~isempty(FileExt(2:end))&&(~isempty(imformats(FileExt(2:end))) || isequal(FileExt,'.vol'))%&& isequal(NomType,'*')% multi-frame image |
| 939 | | if ~isequal(SubDir,'') |
| 940 | | imainfo=imfinfo([fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]); |
| 941 | | else |
| 942 | | imainfo=imfinfo([FileBase FileIndices FileExt]); |
| 943 | | end |
| 944 | | ColorType=imainfo.ColorType;%='truecolor' for color images |
| 945 | | end |
| 946 | | if isfield(imainfo,'Width') && isfield(imainfo,'Height') |
| 947 | | if length(imainfo)>1 |
| 948 | | set(handles.num_Npx,'String',num2str(imainfo(1).Width));%fills nbre of pixels x box |
| 949 | | set(handles.num_Npy,'String',num2str(imainfo(1).Height));%fills nbre of pixels x box |
| 950 | | else |
| 951 | | set(handles.num_Npx,'String',num2str(imainfo.Width));%fills nbre of pixels x box |
| 952 | | set(handles.num_Npy,'String',num2str(imainfo.Height));%fills nbre of pixels x box |
| 953 | | end |
| 954 | | else |
| 955 | | set(handles.num_Npx,'String','');%fills nbre of pixels x box |
| 956 | | set(handles.num_Npy,'String','');%fills nbre of pixels x box |
| 957 | | end |
| 958 | | set(handles.CheckBW,'Value',strcmp(ColorType,'grayscale'))% select handles.CheckBW if grayscale image |
| 959 | | |
| 960 | | %% read parameters (time, geometric calibration..) from a documentation file (.xml advised) |
| 961 | | XmlData.GeometryCalib=[];%default |
| 962 | | XmlFileName=find_imadoc(RootPath,SubDir,RootFile,FileExt); |
| 963 | | [tild,tild,DocExt]=fileparts(XmlFileName); |
| 964 | | warntext='';%default warning message |
| 965 | | NbSlice=1;%default |
| 966 | | ImaDoc_str=''; |
| 967 | | if ~isempty(XmlFileName) |
| 968 | | set(handles.view_xml,'Visible','on') |
| 969 | | set(handles.view_xml,'BackgroundColor',[1 1 0])% paint to yellow color to indicate reading of the xml file |
| 970 | | set(handles.view_xml,'String','view .xml') |
| 971 | | drawnow |
| 972 | | [XmlDataRead,warntext]=imadoc2struct(XmlFileName); |
| 973 | | if ~isempty(warntext) |
| 974 | | msgbox_uvmat('WARNING',warntext) |
| 975 | | end |
| 976 | | if ~isempty(XmlDataRead) |
| 977 | | ImaDoc_str=['view ' DocExt]; % DocExt= '.xml' or .civ (obsolete case) |
| 978 | | %XmlData=XmlDataRead; |
| 979 | | if isfield(XmlDataRead,'TimeUnit')&& ~isempty(XmlDataRead.TimeUnit) |
| 980 | | TimeUnit=XmlDataRead.TimeUnit; |
| 981 | | end |
| 982 | | if isfield(XmlDataRead,'Time')&& ~isempty(XmlDataRead.Time) |
| 983 | | XmlData.Time=XmlDataRead.Time; |
| 984 | | end |
| 985 | | set(handles.view_xml,'BackgroundColor',[1 1 1])% paint back to white |
| 986 | | drawnow |
| 987 | | if isfield(XmlDataRead, 'GeometryCalib') && ~isempty(XmlDataRead.GeometryCalib) |
| 988 | | XmlData.GeometryCalib=XmlDataRead.GeometryCalib; |
| 989 | | if isfield(XmlData.GeometryCalib,'CheckVolumeScan') && isequal(XmlData.GeometryCalib.CheckVolumeScan,1) |
| 990 | | set (handles.slices,'String','volume') |
| 991 | | end |
| 992 | | % check whether the GUI geometry_calib is opened |
| 993 | | hgeometry_calib=findobj('tag','geometry_calib'); |
| 994 | | if ~isempty(hgeometry_calib) % check whether the display of the GUI geometry_calib is consistent with the current calib param |
| 995 | | GUserData=get(hgeometry_calib,'UserData'); |
| 996 | | if ~(isfield(GUserData,'XmlInputFile') && strcmp(GUserData.XmlInputFile,XmlFileName)) |
| 997 | | answer=msgbox_uvmat('INPUT_Y-N','refresh the display of the GUI geometry_calib with the new input data?'); |
| 998 | | if strcmp(answer,'Yes') |
| 999 | | geometry_calib(XmlFileName);%diplay the new calibration points and parameters in geometry_calib |
| 1000 | | end |
| 1001 | | end |
| 1002 | | end |
| 1003 | | end |
| 1004 | | end |
| 1005 | | end |
| 1006 | | if isempty(ImaDoc_str) |
| 1007 | | set(handles.view_xml,'Visible','off') % no .xml (or .civ) file detected |
| 1008 | | else |
| 1009 | | set(handles.view_xml,'String',ImaDoc_str)% indicate that a xml file has been detected |
| 1010 | | end |
| 1011 | | |
| 1012 | | %% Define timing |
| 1013 | | % time not set by the input file: images or civ data: indicate that time is read from the xml file |
| 1014 | | FileType=FileInfo.FileType; |
| 1015 | | if isfield(XmlData,'Time')&& ~isempty(XmlData.Time) && ... |
| 1016 | | (strcmp(FileType,'image')|| strcmp(FileType,'multimage'))%||strcmp(FileType,'civdata')||strcmp(FileType,'civx')) |
| 1017 | | TimeName='xml'; |
| 1018 | | elseif strcmp(FileType,'civdata') |
| 1019 | | TimeName='civdata'; |
| 1020 | | elseif strcmp(FileType,'civx') |
| 1021 | | TimeName='civx'; |
| 1022 | | end |
| 1023 | | if index==1 |
| 1024 | | set(handles.TimeName,'String',TimeName) |
| 1025 | | else |
| 1026 | | set(handles.TimeName_1,'String',TimeName) |
| 1027 | | set(handles.TimeName_1,'Visible','on') |
| 1028 | | end |
| 1029 | | |
| 1030 | | %% store last index in handles.MaxIndex_i and .MaxIndex_j |
| 1031 | | nbfield=max(max(max(i2_series))); |
| 1032 | | if isempty(nbfield) |
| 1033 | | nbfield=max(max(max(i1_series))); |
| 1034 | | end |
| 1035 | | nbfield_j=max(max(max(j2_series))); |
| 1036 | | if isempty(nbfield_j) |
| 1037 | | nbfield_j=max(max(max(j1_series))); |
| 1038 | | end |
| 1039 | | if isfield(XmlData,'Time')&& ~isempty(XmlData.Time) |
| 1040 | | %transform .Time to a column vector if it is a line vector the nomenclature uses a single index |
| 1041 | | if isequal(size(XmlData.Time,1),1) |
| 1042 | | XmlData.Time=(XmlData.Time)'; |
| 1043 | | end |
| 1044 | | end |
| 1045 | | last_i_cell=get(handles.MaxIndex_i,'String'); |
| 1046 | | if isempty(nbfield) |
| 1047 | | last_i_cell{index}=''; |
| 1048 | | else |
| 1049 | | last_i_cell{index}=num2str(nbfield); |
| 1050 | | end |
| 1051 | | set(handles.MaxIndex_i,'String',last_i_cell) |
| 1052 | | last_j_cell=get(handles.MaxIndex_j,'String'); |
| 1053 | | if isempty(nbfield_j) |
| 1054 | | last_j_cell{index}=''; |
| 1055 | | else |
| 1056 | | last_j_cell{index}=num2str(nbfield_j); |
| 1057 | | end |
| 1058 | | set(handles.MaxIndex_j,'String',last_j_cell); |
| 1059 | | |
| 1060 | | %% store geometric calibration in UvData |
| 1061 | | if isfield(XmlData,'GeometryCalib') |
| 1062 | | GeometryCalib=XmlData.GeometryCalib; |
| 1063 | | if isempty(GeometryCalib) |
| 1064 | | set(handles.pxcmx,'String','') |
| 1065 | | set(handles.pxcmy,'String','') |
| 1066 | | set(handles.pxcmx,'Visible','off') |
| 1067 | | set(handles.pxcmy,'Visible','off') |
| 1068 | | set(handles.TransformName,'Value',1); % no transform by default |
| 1069 | | else |
| 1070 | | set(handles.pxcmx,'Visible','on') |
| 1071 | | set(handles.pxcmy,'Visible','on') |
| 1072 | | if (isfield(GeometryCalib,'R')&& ~isequal(GeometryCalib.R(2,1),0) && ~isequal(GeometryCalib.R(1,2),0)) ||... |
| 1073 | | (isfield(GeometryCalib,'kappa1')&& ~isequal(GeometryCalib.kappa1,0)) |
| 1074 | | set(handles.pxcmx,'String','var') |
| 1075 | | set(handles.pxcmy,'String','var') |
| 1076 | | elseif isfield(GeometryCalib,'fx_fy') |
| 1077 | | pixcmx=GeometryCalib.fx_fy(1);%*GeometryCalib.R(1,1)*GeometryCalib.sx/(GeometryCalib.Tz*GeometryCalib.dpx); |
| 1078 | | pixcmy=GeometryCalib.fx_fy(2);%*GeometryCalib.R(2,2)/(GeometryCalib.Tz*GeometryCalib.dpy); |
| 1079 | | set(handles.pxcmx,'String',num2str(pixcmx)) |
| 1080 | | set(handles.pxcmy,'String',num2str(pixcmy)) |
| 1081 | | end |
| 1082 | | if ~get(handles.CheckFixLimits,'Value') |
| 1083 | | set(handles.TransformName,'Value',3); % phys transform by default if fixedLimits is off |
| 1084 | | end |
| 1085 | | if isfield(GeometryCalib,'SliceCoord') |
| 1086 | | siz=size(GeometryCalib.SliceCoord); |
| 1087 | | if siz(1)>1 |
| 1088 | | NbSlice=siz(1); |
| 1089 | | set(handles.slices,'Visible','on') |
| 1090 | | set(handles.slices,'Value',1) |
| 1091 | | end |
| 1092 | | if isfield(GeometryCalib,'CheckVolumeScan') && isequal(GeometryCalib.CheckVolumeScan,1) |
| 1093 | | set(handles.num_NbSlice,'Visible','off') |
| 1094 | | else |
| 1095 | | set(handles.num_NbSlice,'Visible','on') |
| 1096 | | set(handles.num_NbSlice,'String',num2str(NbSlice)) |
| 1097 | | end |
| 1098 | | slices_Callback([],[], handles) |
| 1099 | | end |
| 1100 | | end |
| 1101 | | end |
| 1102 | | |
| 1103 | | %% update the data attached to the uvmat interface |
| 1104 | | if ~isempty(TimeUnit) |
| 1105 | | if index==2 && isfield(UvData,'TimeUnit') && ~strcmp(UvData.TimeUnit,TimeUnit) |
| 1106 | | msgbox_uvmat('WARNING',['time unit for second file series ' TimeUnit ' inconsistent with first series']) |
| 1107 | | else |
| 1108 | | UvData.TimeUnit=TimeUnit; |
| 1109 | | end |
| 1110 | | end |
| 1111 | | UvData.XmlData{index}=XmlData; |
| 1112 | | UvData.NewSeries=1; |
| 1113 | | |
| 1114 | | %display warning message |
| 1115 | | if ~isequal(warntext,'') |
| 1116 | | msgbox_uvmat('WARNING',warntext); |
| 1117 | | end |
| 1118 | | |
| 1119 | | %% set default options in menu 'FieldName' |
| 1120 | | switch FileType |
| 1121 | | case {'civx','civdata'} |
| 1122 | | [FieldList,ColorList]=set_field_list('U','V','C'); |
| 1123 | | set(handles_Fields,'String',[{'image'};FieldList;{'get_field...'}]);%standard menu for civx data |
| 1124 | | set(handles_Fields,'Value',2) % set menu to 'velocity |
| 1125 | | if index==1 |
| 1126 | | set(handles.FieldName_1,'Value',1); |
| 1127 | | set(handles.FieldName_1,'String',[{''};{'image'};FieldList;{'get_field...'}]);%standard menu for civx data reproduced for the second field |
| 1128 | | end |
| 1129 | | set(handles.ColorScalar,'Value',1) |
| 1130 | | set(handles.ColorScalar,'String',ColorList) |
| 1131 | | set(handles.Vectors,'Visible','on') |
| 1132 | | %set(handles.Coord_x,'Value',1); |
| 1133 | | set(handles.Coord_x,'String','X'); |
| 1134 | | set(handles.Coord_y,'String','Y'); |
| 1135 | | case 'netcdf' |
| 1136 | | set(handles_Fields,'Value',1) |
| 1137 | | set(handles_Fields,'String',{'get_field...'}) |
| 1138 | | if index==1 |
| 1139 | | FieldName_Callback([],[], handles) |
| 1140 | | else |
| 1141 | | FieldName_1_Callback([],[], handles) |
| 1142 | | end |
| 1143 | | otherwise |
| 1144 | | set(handles_Fields,'Value',1) % set menu to 'image' |
| 1145 | | set(handles_Fields,'String',{'image'}) |
| 1146 | | %set(handles.Coord_x,'Value',1); |
| 1147 | | set(handles.Coord_x,'String','Coord_x'); |
| 1148 | | set(handles.Coord_y,'String','Coord_y'); |
| 1149 | | end |
| 1150 | | set(handles.uvmat,'UserData',UvData) |
| 1151 | | |
| 1152 | | %% set index navigation options |
| 1153 | | scan_option='i';%default |
| 1154 | | state_j='off'; %default |
| 1155 | | if index==2 |
| 1156 | | if get(handles.scan_j,'Value') |
| 1157 | | scan_option='j'; %keep the scan option for the second file series |
| 1158 | | end |
| 1159 | | if strcmp(get(handles.j1,'Visible'),'on') |
| 1160 | | state_j='on'; |
| 1161 | | end |
| 1162 | | end |
| 1163 | | [ref_j,ref_i]=find(squeeze(i1_series(1,:,:))); |
| 1164 | | if ~isempty(j1_series) |
| 1165 | | state_j='on'; |
| 1166 | | if index==1 |
| 1167 | | if isequal(ref_i,ref_i(1)*ones(size(ref_j)))% if ref_i is always equal to its first value |
| 1168 | | scan_option='j'; %scan j indext |
| 1169 | | end |
| 1170 | | end |
| 1171 | | end |
| 1172 | | if isequal(scan_option,'i') |
| 1173 | | diff_ref_i=diff(ref_i,1); |
| 1174 | | if isempty(diff_ref_i) |
| 1175 | | diff_ref_i=1; |
| 1176 | | end |
| 1177 | | if isequal (diff_ref_i,diff_ref_i(1)*ones(size(diff_ref_i))) |
| 1178 | | set(handles.num_IndexIncrement,'String',num2str(diff_ref_i(1))) |
| 1179 | | end |
| 1180 | | set(handles.scan_i,'Value',1) |
| 1181 | | scan_i_Callback([],[], handles); |
| 1182 | | else |
| 1183 | | diff_ref_j=diff(ref_j); |
| 1184 | | if isempty(diff_ref_j) |
| 1185 | | diff_ref_j=1; |
| 1186 | | end |
| 1187 | | if isequal (diff_ref_j,diff_ref_j(1)*ones(size(diff_ref_j))) |
| 1188 | | set(handles.num_IndexIncrement,'String',num2str(diff_ref_j(1))) |
| 1189 | | end |
| 1190 | | set(handles.scan_j,'Value',1) |
| 1191 | | scan_j_Callback([],[], handles); |
| 1192 | | end |
| 1193 | | set(handles.scan_j,'Visible',state_j) |
| 1194 | | set(handles.j1,'Visible',state_j) |
| 1195 | | set(handles.j2,'Visible',state_j) |
| 1196 | | set(handles.MaxIndex_j,'Visible',state_j); |
| 1197 | | set(handles.j_text,'Visible',state_j); |
| 1198 | | if ~isempty(i2_series)||~isempty(j2_series) |
| 1199 | | set(handles.CheckFixPair,'Visible','on') |
| 1200 | | elseif index==1 |
| 1201 | | set(handles.CheckFixPair,'Visible','off') |
| 1202 | | end |
| 1203 | | |
| 1204 | | %% apply the effect of the transform fct and view the field |
| 1205 | | transform=get(handles.TransformPath,'UserData'); |
| 1206 | | if index==2 && (~isa(transform,'function_handle')||nargin(transform)<3) |
| 1207 | | set(handles.TransformName,'value',2); % set transform to sub_field if the current fct doe not accept two input fields |
| 1208 | | end |
| 1209 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% set button color to red to indicate that refresh has been updated |
| 1210 | | TransformName_Callback([],[],handles)% callback for the selection of transform function, then refresh the current plot |
| 1211 | | mask_test=get(handles.CheckMask,'value'); |
| 1212 | | if mask_test |
| 1213 | | MaskData=get(handles.CheckMask,'UserData'); |
| 1214 | | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle) |
| 1215 | | delete(MaskData.maskhandle) %delete old mask |
| 1216 | | end |
| 1217 | | CheckMask_Callback([],[],handles) |
| 1218 | | end |
| 1219 | | |
| 1220 | | %------------------------------------------------------------------------ |
| 1221 | | % --- switch file index scanning options scan_i and scan_j in an exclusive way |
| 1222 | | %------------------------------------------------------------------------ |
| 1223 | | function scan_i_Callback(hObject, eventdata, handles) |
| 1224 | | |
| 1225 | | if get(handles.scan_i,'Value')==1 |
| 1226 | | set(handles.scan_j,'Value',0) |
| 1227 | | else |
| 1228 | | set(handles.scan_j,'Value',1) |
| 1229 | | end |
| 1230 | | scan_j_Callback(hObject, eventdata, handles) |
| 1231 | | |
| 1232 | | %------------------------------------------------------------------------ |
| 1233 | | % --- switch file index scanning options scan_i and scan_j in an exclusive way |
| 1234 | | %------------------------------------------------------------------------ |
| 1235 | | function scan_j_Callback(hObject, eventdata, handles) |
| 1236 | | |
| 1237 | | if get(handles.scan_j,'Value')==1 |
| 1238 | | set(handles.scan_i,'Value',0) |
| 1239 | | else |
| 1240 | | set(handles.scan_i,'Value',1) |
| 1241 | | set(handles.CheckFixPair,'Visible','off') |
| 1242 | | end |
| 1243 | | |
| 1244 | | %------------------------------------------------------------------------ |
| 1245 | | function i1_Callback(hObject, eventdata, handles) |
| 1246 | | %------------------------------------------------------------------------ |
| 1247 | | update_ij(handles,1) |
| 1248 | | |
| 1249 | | %------------------------------------------------------------------------ |
| 1250 | | function i2_Callback(hObject, eventdata, handles) |
| 1251 | | %------------------------------------------------------------------------ |
| 1252 | | update_ij(handles,2) |
| 1253 | | |
| 1254 | | %------------------------------------------------------------------------ |
| 1255 | | function j1_Callback(hObject, eventdata, handles) |
| 1256 | | %------------------------------------------------------------------------ |
| 1257 | | update_ij(handles,3) |
| 1258 | | |
| 1259 | | %------------------------------------------------------------------------ |
| 1260 | | function j2_Callback(hObject, eventdata, handles) |
| 1261 | | %------------------------------------------------------------------------ |
| 1262 | | update_ij(handles,4) |
| 1263 | | |
| 1264 | | %------------------------------------------------------------------------ |
| 1265 | | %--- update the index display after action on edit boxes i1, i2, j1 or j2 |
| 1266 | | %------------------------------------------------------------------------ |
| 1267 | | function update_ij(handles,index_rank) |
| 1268 | | |
| 1269 | | NomType=get(handles.NomType,'String'); |
| 1270 | | indices=get(handles.FileIndex,'String'); |
| 1271 | | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(indices);% the indices for the second series taken from FileIndex |
| 1272 | | switch index_rank |
| 1273 | | case 1 |
| 1274 | | indices=fullfile_uvmat('','','','',NomType,stra2num(get(handles.i1,'String')),i2,j1,j2); |
| 1275 | | % set(handles.i1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| 1276 | | case 2 |
| 1277 | | indices=fullfile_uvmat('','','','',NomType,i1,stra2num(get(handles.i2,'String')),j1,j2); |
| 1278 | | % set(handles.i2,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| 1279 | | case 3 |
| 1280 | | indices=fullfile_uvmat('','','','',NomType,i1,i2,stra2num(get(handles.j1,'String')),j2); |
| 1281 | | % set(handles.j1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| 1282 | | case 4 |
| 1283 | | indices=fullfile_uvmat('','','','',NomType,i1,i2,j1,stra2num(get(handles.j2,'String'))); |
| 1284 | | % set(handles.j2,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| 1285 | | end |
| 1286 | | set(handles.FileIndex,'String',indices) |
| 1287 | | %set(handles.FileIndex,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| 1288 | | % update the second index if relevant |
| 1289 | | if strcmp(get(handles.FileIndex_1,'Visible'),'on') |
| 1290 | | NomType_1=get(handles.NomType_1,'String'); |
| 1291 | | indices_1=get(handles.FileIndex_1,'String'); |
| 1292 | | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(indices_1);% the indices for the second series taken from FileIndex_1 |
| 1293 | | switch index_rank |
| 1294 | | case 1 |
| 1295 | | indices_1=fullfile_uvmat('','','','',NomType_1,stra2num(get(handles.i1,'String')),i2_1,j1_1,j2_1); |
| 1296 | | case 2 |
| 1297 | | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,stra2num(get(handles.i2,'String')),j1_1,j2_1); |
| 1298 | | case 3 |
| 1299 | | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,i2_1,stra2num(get(handles.j1,'String')),j2_1); |
| 1300 | | case 4 |
| 1301 | | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,i2_1,j1_1,stra2num(get(handles.j2,'String'))); |
| 1302 | | end |
| 1303 | | set(handles.FileIndex_1,'String',indices_1) |
| 1304 | | set(handles.FileIndex_1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| 1305 | | end |
| 1306 | | |
| 1307 | | %------------------------------------------------------------------------ |
| 1308 | | |
| 1309 | | %------------------------------------------------------------------------ |
| 1310 | | function slices_Callback(hObject, eventdata, handles) |
| 1311 | | %------------------------------------------------------------------------ |
| 1312 | | if strcmp(get(handles.slices,'String'),'slices') |
| 1313 | | if get(handles.slices,'Value')==1 |
| 1314 | | set(handles.num_NbSlice,'Visible','on') |
| 1315 | | set(handles.z_text,'Visible','on') |
| 1316 | | set(handles.z_index,'Visible','on') |
| 1317 | | num_NbSlice_Callback(hObject, eventdata, handles) |
| 1318 | | else |
| 1319 | | set(handles.num_NbSlice,'Visible','off') |
| 1320 | | set(handles.z_text,'Visible','off') |
| 1321 | | set(handles.z_index,'Visible','off') |
| 1322 | | set(handles.masklevel,'Value',1) |
| 1323 | | set(handles.masklevel,'String',{'1'}) |
| 1324 | | end |
| 1325 | | end |
| 1326 | | |
| 1327 | | %------------------------------------------------------------------------ |
| 1328 | | function num_NbSlice_Callback(hObject, eventdata, handles) |
| 1329 | | %------------------------------------------------------------------------ |
| 1330 | | mode=get(handles.slices,'String'); |
| 1331 | | nb_slice_str=get(handles.num_NbSlice,'String'); |
| 1332 | | if strcmp(mode,'volume') |
| 1333 | | z=stra2num(get(handles.j1,'String')); |
| 1334 | | else |
| 1335 | | num=str2double(get(handles.i1,'String')); |
| 1336 | | nbslice=str2double(get(handles.num_NbSlice,'String')); |
| 1337 | | z=mod(num-1,nbslice)+1; |
| 1338 | | end |
| 1339 | | set(handles.z_index,'String',num2str(z)) |
| 1340 | | for ilist=1:nbslice |
| 1341 | | list_index{ilist,1}=num2str(ilist); |
| 1342 | | end |
| 1343 | | set(handles.masklevel,'String',list_index) |
| 1344 | | set(handles.masklevel,'Value',z) |
| 1345 | | |
| 1346 | | %------------------------------------------------------------------------ |
| 1347 | | % --- Executes on button press in view_xml. |
| 1348 | | %------------------------------------------------------------------------ |
| 1349 | | function view_xml_Callback(hObject, eventdata, handles) |
| 1350 | | |
| 1351 | | % if TimeName defined, open the xml file corresponding to the first file |
| 1352 | | % series, else open the xml file corresponding to the second series |
| 1353 | | if isempty(get(handles.TimeName,'String'))% open the xml file corresponding to the secodn file series |
| 1354 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| 1355 | | else |
| 1356 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| 1357 | | end |
| 1358 | | option=get(handles.view_xml,'String'); |
| 1359 | | if isequal(option,'view .xml') |
| 1360 | | FileXml=fullfile(RootPath,[SubDir '.xml']); |
| 1361 | | if ~exist(FileXml,'file')% case of civ files , removes the extension for subdir |
| 1362 | | FileXml=fullfile(RootPath,[regexprep(SubDir,'\..+$','') '.xml']); |
| 1363 | | end |
| 1364 | | heditxml=editxml(FileXml); |
| 1365 | | end |
| 1366 | | |
| 1367 | | %------------------------------------------------------------------------ |
| 1368 | | % --- Executes on button press in CheckMask. |
| 1369 | | function CheckMask_Callback(hObject, eventdata, handles) |
| 1370 | | %------------------------------------------------------------------------ |
| 1371 | | %case of view mask selection |
| 1372 | | if isequal(get(handles.CheckMask,'Value'),1) |
| 1373 | | [RootPath,SubDir]=read_file_boxes(handles); |
| 1374 | | MaskSubDir=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
| 1375 | | MaskPath=fullfile(RootPath,[MaskSubDir '.mask']); |
| 1376 | | mdetect=0; |
| 1377 | | if exist(MaskPath,'dir') |
| 1378 | | ListStruct=dir(MaskPath);%look for a mask file |
| 1379 | | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
| 1380 | | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
| 1381 | | ListFiles=ListCells(1,:);%list of file and dri names |
| 1382 | | ListFiles=ListFiles(~check_dir);%list of file names (excluding dir) |
| 1383 | | if ~isempty(ListFiles) |
| 1384 | | for ifile=1:numel(ListFiles) |
| 1385 | | [tild,tild,MaskExt]=fileparts(ListFiles{1}); |
| 1386 | | [tild,tild,MaskFile{ifile},i1_series,i2_series,j1_series,j2_series,MaskNomType,MaskFileInfo]=find_file_series(MaskPath,ListFiles{ifile},0); |
| 1387 | | MaskFileType=MaskFileInfo.FileType; |
| 1388 | | if strcmp(MaskFileType,'image') && isempty(i2_series) && isempty(j2_series) |
| 1389 | | mdetect=1; |
| 1390 | | end |
| 1391 | | if ~strcmp(MaskFile{ifile},MaskFile{1}) |
| 1392 | | mdetect=0;% cancel detection test in case of multiple masks, use the brower for selection |
| 1393 | | break |
| 1394 | | end |
| 1395 | | end |
| 1396 | | end |
| 1397 | | RootPath=MaskPath; |
| 1398 | | end |
| 1399 | | if mdetect==0 |
| 1400 | | MaskFullName=uigetfile_uvmat('pick a mask image file:',RootPath,'image'); |
| 1401 | | if isempty(MaskFullName) |
| 1402 | | set(handles.CheckMask,'Value',0) |
| 1403 | | end |
| 1404 | | [MaskPath,MaskName,MaskExt]=fileparts(MaskFullName); |
| 1405 | | [tild,tild,MaskFile,i1_series,i2_series,j1_series,j2_series,MaskNomType]=find_file_series(MaskPath,[MaskName MaskExt],0); |
| 1406 | | if ~(isempty(i2_series) && isempty(j2_series)) |
| 1407 | | MaskNomType='*'; |
| 1408 | | end |
| 1409 | | end |
| 1410 | | Mask.Path=MaskPath; |
| 1411 | | if isempty(MaskFile) |
| 1412 | | Mask.File=''; |
| 1413 | | elseif ischar(MaskFile) |
| 1414 | | Mask.File=MaskFile; |
| 1415 | | else |
| 1416 | | Mask.File=MaskFile{1}; |
| 1417 | | end |
| 1418 | | Mask.Ext=MaskExt; |
| 1419 | | Mask.NomType=MaskNomType; |
| 1420 | | set(handles.CheckMask,'UserData',Mask); |
| 1421 | | errormsg=update_mask(handles); |
| 1422 | | else % desactivate mask display |
| 1423 | | MaskData=get(handles.CheckMask,'UserData'); |
| 1424 | | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle) |
| 1425 | | delete(MaskData.maskhandle) |
| 1426 | | end |
| 1427 | | set(handles.CheckMask,'UserData',[]) |
| 1428 | | UvData=get(handles.uvmat,'UserData'); |
| 1429 | | if isfield(UvData,'MaskName') |
| 1430 | | UvData=rmfield(UvData,'MaskName'); |
| 1431 | | set(handles.uvmat,'UserData',UvData) |
| 1432 | | end |
| 1433 | | set(handles.CheckMask,'BackgroundColor',[0.7 0.7 0.7]) |
| 1434 | | end |
| 1435 | | |
| 1436 | | %------------------------------------------------------------------------ |
| 1437 | | function errormsg=update_mask(handles) |
| 1438 | | %------------------------------------------------------------------------ |
| 1439 | | errormsg=[];%default |
| 1440 | | Mask=get(handles.CheckMask,'UserData'); |
| 1441 | | MaskIndex=1; |
| 1442 | | if strcmp(get(handles.z_index,'Visible'),'on') |
| 1443 | | MaskIndex=str2num(get(handles.z_index,'String')); |
| 1444 | | end |
| 1445 | | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
| 1446 | | uistack(Mask.maskhandle,'top'); |
| 1447 | | end |
| 1448 | | MaskName=fullfile_uvmat(Mask.Path,'',Mask.File,Mask.Ext,Mask.NomType,MaskIndex); |
| 1449 | | UvData=get(handles.uvmat,'UserData'); |
| 1450 | | |
| 1451 | | %% update mask image if the mask is new |
| 1452 | | if ~ (isfield(UvData,'MaskName') && isequal(UvData.MaskName,MaskName)) |
| 1453 | | UvData.MaskName=MaskName; %update the recorded name on UvData |
| 1454 | | set(handles.uvmat,'UserData',UvData); |
| 1455 | | if ~exist(MaskName,'file') |
| 1456 | | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
| 1457 | | delete(Mask.maskhandle) |
| 1458 | | end |
| 1459 | | else |
| 1460 | | %read mask image |
| 1461 | | [MaskField,tild,errormsg] = read_field(MaskName,'image'); |
| 1462 | | if ~isempty(errormsg) |
| 1463 | | return |
| 1464 | | end |
| 1465 | | npxy=size(MaskField.A); |
| 1466 | | if length(npxy)>2 |
| 1467 | | errormsg=[MaskName ' is not a grey scale image']; |
| 1468 | | return |
| 1469 | | elseif ~isa(MaskField.A,'uint8') |
| 1470 | | errormsg=[MaskName ' is not a 8 bit grey level image']; |
| 1471 | | return |
| 1472 | | end |
| 1473 | | MaskField.ZIndex=MaskIndex; |
| 1474 | | %px to phys or other transform on field |
| 1475 | | menu_transform=get(handles.TransformName,'String'); |
| 1476 | | choice_value=get(handles.TransformName,'Value'); |
| 1477 | | transform_name=menu_transform{choice_value};%name of the transform fct given by the menu 'transform_fct' |
| 1478 | | transform=get(handles.TransformPath,'UserData'); |
| 1479 | | if ~isequal(transform_name,'') && ~isequal(transform_name,'px') |
| 1480 | | if isfield(UvData,'XmlData') && isfield(UvData.XmlData{1},'GeometryCalib')%use geometry calib recorded from the ImaDoc xml file as first priority |
| 1481 | | Calib=UvData.XmlData{1}.GeometryCalib; |
| 1482 | | MaskField=transform(MaskField,UvData.XmlData{1}); |
| 1483 | | end |
| 1484 | | end |
| 1485 | | flagmask=MaskField.A < 200; |
| 1486 | | |
| 1487 | | %make brown color image |
| 1488 | | imflag(:,:,1)=0.9*flagmask; |
| 1489 | | imflag(:,:,2)=0.7*flagmask; |
| 1490 | | imflag(:,:,3)=zeros(size(flagmask)); |
| 1491 | | |
| 1492 | | %update mask image |
| 1493 | | hmask=[]; %default |
| 1494 | | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
| 1495 | | hmask=Mask.maskhandle; |
| 1496 | | end |
| 1497 | | if ~isempty(hmask) |
| 1498 | | set(hmask,'CData',imflag) |
| 1499 | | set(hmask,'AlphaData',flagmask*0.6) |
| 1500 | | set(hmask,'XData',MaskField.Coord_x); |
| 1501 | | set(hmask,'YData',MaskField.Coord_y); |
| 1502 | | % uistack(hmask,'top') |
| 1503 | | else |
| 1504 | | axes(handles.PlotAxes) |
| 1505 | | hold on |
| 1506 | | Mask.maskhandle=image(MaskField.Coord_x,MaskField.Coord_y,imflag,'Tag','mask','HitTest','off','AlphaData',0.6*ones(size(flagmask))); |
| 1507 | | set(handles.CheckMask,'UserData',Mask) |
| 1508 | | end |
| 1509 | | end |
| 1510 | | end |
| 1511 | | |
| 1512 | | %------------------------------------------------------------------------ |
| 1513 | | %------------------------------------------------------------------------ |
| 1514 | | % III - MAIN InputFileREFRESH FUNCTIONS : 'FRAME PLOT' |
| 1515 | | %------------------------------------------------------------------------ |
| 1516 | | |
| 1517 | | %------------------------------------------------------------------------ |
| 1518 | | % --- Executes on button press in runplus: make one step forward and call |
| 1519 | | % --- InputFileREFRESH. The step forward is along the fieldname series 1 or 2 depending on |
| 1520 | | % --- the scan_i and scan_j check box (exclusive each other) |
| 1521 | | function runplus_Callback(hObject, eventdata, handles) |
| 1522 | | %------------------------------------------------------------------------ |
| 1523 | | |
| 1524 | | set(handles.runplus,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| 1525 | | drawnow |
| 1526 | | increment=str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| 1527 | | if isnan(increment)% case of free increment: move to next available field index |
| 1528 | | increment='+'; |
| 1529 | | end |
| 1530 | | errormsg=runpm(hObject,eventdata,handles,increment); |
| 1531 | | if ~isempty(errormsg) |
| 1532 | | msgbox_uvmat('ERROR',errormsg); |
| 1533 | | end |
| 1534 | | |
| 1535 | | %------------------------------------------------------------------------ |
| 1536 | | % --- Executes on button press in runmin: make one step backward and call |
| 1537 | | % --- InputFileREFRESH. The step backward is along the fieldname series 1 or 2 depending on |
| 1538 | | % --- the scan_i and scan_j check box (exclusive each other) |
| 1539 | | function runmin_Callback(hObject, eventdata, handles) |
| 1540 | | %------------------------------------------------------------------------ |
| 1541 | | |
| 1542 | | set(handles.runmin,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| 1543 | | drawnow |
| 1544 | | increment=-str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| 1545 | | if isnan(increment)% case of free increment: move to previous available field index |
| 1546 | | increment='-'; |
| 1547 | | end |
| 1548 | | errormsg=runpm(hObject,eventdata,handles,increment); |
| 1549 | | if ~isempty(errormsg) |
| 1550 | | msgbox_uvmat('ERROR',errormsg); |
| 1551 | | end |
| 1552 | | |
| 1553 | | %------------------------------------------------------------------------ |
| 1554 | | % -- Executes on button press in Movie: make a series of +> steps |
| 1555 | | function Movie_Callback(hObject, eventdata, handles) |
| 1556 | | %------------------------------------------------------------------------ |
| 1557 | | |
| 1558 | | set(handles.Movie,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| 1559 | | drawnow |
| 1560 | | increment=str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| 1561 | | if isnan(increment)% case of free increment: move to next available field index |
| 1562 | | increment='+'; |
| 1563 | | end |
| 1564 | | set(handles.STOP,'Visible','on') |
| 1565 | | set(handles.speed,'Visible','on') |
| 1566 | | set(handles.speed_txt,'Visible','on') |
| 1567 | | set(handles.Movie,'BusyAction','queue') |
| 1568 | | UvData=get(handles.uvmat,'UserData'); |
| 1569 | | |
| 1570 | | while get(handles.Movie,'Value')==1 && get(handles.speed,'Value')~=0 && isequal(get(handles.Movie,'BusyAction'),'queue') % enable STOP command |
| 1571 | | errormsg=runpm(hObject,eventdata,handles,increment); |
| 1572 | | if ~isempty(errormsg) |
| 1573 | | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1574 | | return |
| 1575 | | end |
| 1576 | | pause(1.02-get(handles.speed,'Value'))% wait for next image |
| 1577 | | end |
| 1578 | | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj), |
| 1579 | | UvData.aviobj=close(UvData.aviobj); |
| 1580 | | set(handles.uvmat,'UserData',UvData); |
| 1581 | | end |
| 1582 | | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1583 | | |
| 1584 | | %------------------------------------------------------------------------ |
| 1585 | | % -- Executes on button press in Movie: make a series of <- steps |
| 1586 | | function MovieBackward_Callback(hObject, eventdata, handles) |
| 1587 | | %------------------------------------------------------------------------ |
| 1588 | | set(handles.MovieBackward,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| 1589 | | drawnow |
| 1590 | | increment=-str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| 1591 | | if isnan(increment)% case of free increment: move to next available field index |
| 1592 | | increment='-'; |
| 1593 | | end |
| 1594 | | set(handles.STOP,'Visible','on') |
| 1595 | | set(handles.speed,'Visible','on') |
| 1596 | | set(handles.speed_txt,'Visible','on') |
| 1597 | | set(handles.MovieBackward,'BusyAction','queue') |
| 1598 | | UvData=get(handles.uvmat,'UserData'); |
| 1599 | | |
| 1600 | | while get(handles.MovieBackward,'Value')==1 && get(handles.speed,'Value')~=0 && isequal(get(handles.MovieBackward,'BusyAction'),'queue') % enable STOP command |
| 1601 | | errormsg=runpm(hObject,eventdata,handles,increment); |
| 1602 | | if ~isempty(errormsg) |
| 1603 | | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1604 | | return |
| 1605 | | end |
| 1606 | | pause(1.02-get(handles.speed,'Value'))% wait for next image |
| 1607 | | end |
| 1608 | | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj), |
| 1609 | | UvData.aviobj=close(UvData.aviobj); |
| 1610 | | set(handles.uvmat,'UserData',UvData); |
| 1611 | | end |
| 1612 | | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1613 | | |
| 1614 | | %------------------------------------------------------------------------ |
| 1615 | | function STOP_Callback(hObject, eventdata, handles) |
| 1616 | | %------------------------------------------------------------------------ |
| 1617 | | set(handles.movie_pair,'BusyAction','Cancel') |
| 1618 | | set(handles.movie_pair,'value',0) |
| 1619 | | set(handles.Movie,'BusyAction','Cancel') |
| 1620 | | set(handles.MovieBackward,'BusyAction','Cancel') |
| 1621 | | set(handles.MenuExportMovie,'BusyAction','Cancel') |
| 1622 | | %set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1623 | | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1624 | | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| 1625 | | |
| 1626 | | %------------------------------------------------------------------------ |
| 1627 | | % --- function activated by runplus and run minus |
| 1628 | | function errormsg=runpm(hObject,eventdata,handles,increment) |
| 1629 | | %------------------------------------------------------------------------ |
| 1630 | | errormsg='';%default |
| 1631 | | %% check for movie pair status |
| 1632 | | movie_status=get(handles.movie_pair,'Value'); |
| 1633 | | if movie_status |
| 1634 | | STOP_Callback(hObject, eventdata, handles)%interrupt movie pair if active |
| 1635 | | end |
| 1636 | | |
| 1637 | | %% read the current input file name(s) and field indices |
| 1638 | | InputFile=read_GUI(handles.InputFile); |
| 1639 | | InputFile.RootFile=regexprep(InputFile.RootFile,'^[\\/]|[\\/]$','');%suppress possible / or \ separator at the beginning or the end of the string |
| 1640 | | InputFile.SubDir=regexprep(InputFile.SubDir,'^[\\/]|[\\/]$','');%suppress possible / or \ separator at the beginning or the end of the string |
| 1641 | | FileExt=InputFile.FileExt; |
| 1642 | | NomType=InputFile.NomType; |
| 1643 | | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(InputFile.FileIndex);% check back the indices used |
| 1644 | | if isempty(i1) |
| 1645 | | i1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
| 1646 | | elseif isempty(j1) && strcmp(get(handles.j1,'Visible'),'on') |
| 1647 | | j1=str2num(get(handles.j1,'String'));%case of indexed movie |
| 1648 | | end |
| 1649 | | if movie_status% we read the second index from the edit box |
| 1650 | | i2=str2num(get(handles.i2,'String'));%read the field indices (for movie, it is not given by the file name) |
| 1651 | | if strcmp(get(handles.j2,'Visible'),'on') |
| 1652 | | j2=str2num(get(handles.j2,'String'));% |
| 1653 | | end |
| 1654 | | end |
| 1655 | | sub_value= get(handles.SubField,'Value'); |
| 1656 | | if sub_value % a second input file has been entered |
| 1657 | | [InputFile.RootPath_1,InputFile.SubDir_1,InputFile.RootFile_1,InputFile.FileIndex_1,InputFile.FileExt_1,InputFile.NomType_1]=read_file_boxes_1(handles); |
| 1658 | | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(InputFile.FileIndex_1);% the indices for the second series taken from FileIndex_1 |
| 1659 | | if isempty(i1_1) |
| 1660 | | i1_1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
| 1661 | | elseif isempty(j1_1) && strcmp(get(handles.j1,'Visible'),'on') |
| 1662 | | j1_1=str2num(get(handles.j1,'String'));%case of indexed movie |
| 1663 | | end |
| 1664 | | else |
| 1665 | | filename_1=[]; |
| 1666 | | end |
| 1667 | | |
| 1668 | | %% increment (or decrement) the field indices and update the input filename(s) |
| 1669 | | if ~isnumeric(increment)% undefined increment value |
| 1670 | | set(handles.CheckFixPair,'Value',0) |
| 1671 | | end |
| 1672 | | CheckFixPair=get(handles.CheckFixPair,'Value')||(isempty(i2)&&isempty(j2)); |
| 1673 | | |
| 1674 | | % the pair i1-i2 or j1-j2 is imposed (check box CheckFixPair selected) |
| 1675 | | if CheckFixPair && isnumeric(increment) |
| 1676 | | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| 1677 | | i1=i1+increment; |
| 1678 | | i2=i2+increment; |
| 1679 | | if sub_value |
| 1680 | | i1_1=i1_1+increment; |
| 1681 | | i2_1=i2_1+increment; |
| 1682 | | end |
| 1683 | | else % case of scanning along index j (burst numbers) |
| 1684 | | j1=j1+increment; |
| 1685 | | j2=j2+increment; |
| 1686 | | if sub_value |
| 1687 | | j1_1=j1_1+increment; |
| 1688 | | j2_1=j2_1+increment; |
| 1689 | | end |
| 1690 | | end |
| 1691 | | |
| 1692 | | % the pair i1-i2 or j1-j2 is free (check box CheckFixPair not selected): the list of existing indices recorded in UvData is used |
| 1693 | | else |
| 1694 | | UvData=get(handles.uvmat,'UserData'); |
| 1695 | | ref_i=i1; |
| 1696 | | if ~isempty(i2) |
| 1697 | | ref_i=floor((i1+i2)/2);% current reference index i |
| 1698 | | end |
| 1699 | | ref_j=1; |
| 1700 | | if ~isempty(j1) |
| 1701 | | ref_j=j1; |
| 1702 | | if ~isempty(j2) |
| 1703 | | ref_j=floor((j1+j2)/2);% current reference index j |
| 1704 | | end |
| 1705 | | end |
| 1706 | | if isnumeric(increment) |
| 1707 | | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| 1708 | | ref_i=ref_i+increment;% increment the current reference index i |
| 1709 | | else % case of scanning along index j (burst numbers) |
| 1710 | | ref_j=ref_j+increment;% increment the current reference index j if scan_j option is used |
| 1711 | | end |
| 1712 | | else % free increment |
| 1713 | | % runaction=get(gcbo,'tag'); |
| 1714 | | if strcmp(increment,'+')% if runplus or movie is activated |
| 1715 | | step=1; |
| 1716 | | else |
| 1717 | | step=-1; |
| 1718 | | end |
| 1719 | | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| 1720 | | ref_i=ref_i+step; |
| 1721 | | while ref_i>=0 && size(UvData.i1_series{1},3)>=ref_i+1 && UvData.i1_series{1}(1,ref_j+1,ref_i+1)==0 |
| 1722 | | ref_i=ref_i+step; |
| 1723 | | end |
| 1724 | | else % case of scanning along index j (burst numbers) |
| 1725 | | ref_j=ref_j+step; |
| 1726 | | while ref_j>=0 && size(UvData.i1_series{1},2)>=ref_j+1 && UvData.i1_series{1}(1,ref_j+1,ref_i+1)==0 |
| 1727 | | ref_j=ref_j+step; |
| 1728 | | end |
| 1729 | | end |
| 1730 | | end |
| 1731 | | if ref_i<0 |
| 1732 | | errormsg='minimum i index reached'; |
| 1733 | | elseif ref_j<0 |
| 1734 | | errormsg='minimum j index reached'; |
| 1735 | | elseif ref_i+1>size(UvData.i1_series{1},3) |
| 1736 | | errormsg='maximum i index reached (reload the input file to update the index bound)'; |
| 1737 | | elseif ref_j+1>size(UvData.i1_series{1},2) |
| 1738 | | errormsg='maximum j index reached (reload the input file to update the index bound)'; |
| 1739 | | end |
| 1740 | | if ~isempty(errormsg),return,end |
| 1741 | | siz=size(UvData.i1_series{1}); |
| 1742 | | ref_indices=ref_i*siz(1)*siz(2)+ref_j*siz(1)+1:ref_i*siz(1)*siz(2)+(ref_j+1)*siz(1); |
| 1743 | | i1_subseries=UvData.i1_series{1}(ref_indices); |
| 1744 | | ref_indices=ref_indices(i1_subseries>0); |
| 1745 | | if isempty(ref_indices)% case of pairs (free index i) |
| 1746 | | ref_indices=ref_i*siz(1)*siz(2)+1:(ref_i+1)*siz(1)*siz(2); |
| 1747 | | i1_subseries=UvData.i1_series{1}(ref_indices); |
| 1748 | | ref_indices=ref_indices(i1_subseries>0); |
| 1749 | | end |
| 1750 | | if isempty(ref_indices),errormsg='no next frame: set num_IndexIncrement =''*'' to reach the next existing file';return |
| 1751 | | end |
| 1752 | | i1=UvData.i1_series{1}(ref_indices(end)); |
| 1753 | | if ~isempty(UvData.i2_series{1}) |
| 1754 | | i2=UvData.i2_series{1}(ref_indices(end)); |
| 1755 | | end |
| 1756 | | if ~isempty(UvData.j1_series{1}) |
| 1757 | | j1=UvData.j1_series{1}(ref_indices(end)); |
| 1758 | | end |
| 1759 | | if ~isempty(UvData.j2_series{1}) |
| 1760 | | j2=UvData.j2_series{1}(ref_indices(end)); |
| 1761 | | end |
| 1762 | | |
| 1763 | | % case of a second file series |
| 1764 | | if sub_value |
| 1765 | | ref_i_1=i1_1; |
| 1766 | | if ~isempty(i2_1) |
| 1767 | | ref_i_1=floor((i1_1+i2_1)/2);% current reference index i |
| 1768 | | end |
| 1769 | | ref_j_1=1; |
| 1770 | | if ~isempty(j1_1) |
| 1771 | | ref_j_1=j1_1; |
| 1772 | | if ~isempty(j2_1) |
| 1773 | | ref_j_1=floor((j1_1+j2_1)/2);% current reference index j |
| 1774 | | end |
| 1775 | | end |
| 1776 | | if isnumeric(increment) |
| 1777 | | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| 1778 | | ref_i_1=ref_i_1+increment;% increment the current reference index i |
| 1779 | | else % case of scanning along index j (burst numbers) |
| 1780 | | ref_j_1=ref_j_1+increment;% increment the current reference index j if scan_j option is used |
| 1781 | | end |
| 1782 | | else % free increment, synchronise the ref indices with the first series |
| 1783 | | ref_i_1=ref_i; |
| 1784 | | ref_j_1=ref_j; |
| 1785 | | end |
| 1786 | | if numel(UvData.i1_series)==1 |
| 1787 | | UvData.i1_series{2}=UvData.i1_series{1}; |
| 1788 | | UvData.j1_series{2}=UvData.j1_series{1}; |
| 1789 | | UvData.i2_series{2}=UvData.i2_series{1}; |
| 1790 | | UvData.j2_series{2}=UvData.j2_series{1}; |
| 1791 | | end |
| 1792 | | if ref_i_1<0 |
| 1793 | | errormsg='minimum i index reached'; |
| 1794 | | elseif ref_j_1<0 |
| 1795 | | errormsg='minimum j index reached'; |
| 1796 | | elseif ref_i_1+1>size(UvData.i1_series{2},3) |
| 1797 | | errormsg='maximum i index reached for the second series (reload the input file to update the index bound)'; |
| 1798 | | elseif ref_j_1+1>size(UvData.i1_series{2},2) |
| 1799 | | errormsg='maximum j index reached for the second series(reload the input file to update the index bound)'; |
| 1800 | | end |
| 1801 | | if ~isempty(errormsg),return,end |
| 1802 | | siz=size(UvData.i1_series{2}); |
| 1803 | | ref_indices=ref_i_1*siz(1)*siz(2)+ref_j_1*siz(1)+1:ref_i_1*siz(1)*siz(2)+(ref_j_1+1)*siz(1); |
| 1804 | | i1_subseries=UvData.i1_series{2}(ref_indices); |
| 1805 | | ref_indices=ref_indices(i1_subseries>0); |
| 1806 | | if isempty(ref_indices)% case of pairs (free index i) |
| 1807 | | ref_indices=ref_i_1*siz(1)*siz(2)+1:(ref_i_1+1)*siz(1)*siz(2); |
| 1808 | | i1_subseries=UvData.i1_series{2}(ref_indices); |
| 1809 | | ref_indices=ref_indices(i1_subseries>0); |
| 1810 | | end |
| 1811 | | i1_1=UvData.i1_series{2}(ref_indices(end)); |
| 1812 | | if ~isempty(UvData.i2_series{2}) |
| 1813 | | i2_1=UvData.i2_series{2}(ref_indices(end)); |
| 1814 | | end |
| 1815 | | if ~isempty(UvData.j1_series{2}) |
| 1816 | | j1_1=UvData.j1_series{2}(ref_indices(end)); |
| 1817 | | end |
| 1818 | | if ~isempty(UvData.j2_series{2}) |
| 1819 | | j2_1=UvData.j2_series{1}(ref_indices(end)); |
| 1820 | | end |
| 1821 | | else% the second series (if needed) is the same file as the first |
| 1822 | | i1_1=i1; |
| 1823 | | i2_1=i2; |
| 1824 | | j1_1=j1; |
| 1825 | | j2_1=j2; |
| 1826 | | end |
| 1827 | | end |
| 1828 | | filename=fullfile_uvmat(InputFile.RootPath,InputFile.SubDir,InputFile.RootFile,FileExt,NomType,i1,i2,j1,j2); |
| 1829 | | |
| 1830 | | %% refresh plots |
| 1831 | | if sub_value |
| 1832 | | filename_1=fullfile_uvmat(InputFile.RootPath_1,InputFile.SubDir_1,InputFile.RootFile_1,InputFile.FileExt_1,InputFile.NomType_1,i1_1,i2_1,j1_1,j2_1); |
| 1833 | | errormsg=refresh_field(handles,filename,filename_1,i1,i2,j1,j2,i1_1,i2_1,j1_1,j2_1); |
| 1834 | | else |
| 1835 | | errormsg=refresh_field(handles,filename,filename_1,i1,i2,j1,j2); |
| 1836 | | end |
| 1837 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0]) |
| 1838 | | set(handles.runplus,'BackgroundColor',[1 0 0]) |
| 1839 | | set(handles.runmin,'BackgroundColor',[1 0 0]) |
| 1840 | | |
| 1841 | | %% update the index counters if the index move is successfull |
| 1842 | | |
| 1843 | | if isempty(errormsg) |
| 1844 | | set(handles.i1,'String',num2stra(i1,NomType,1)); |
| 1845 | | if isequal(i2,i1) |
| 1846 | | set(handles.i2,'String',''); |
| 1847 | | else |
| 1848 | | set(handles.i2,'String',num2stra(i2,NomType,1)); |
| 1849 | | end |
| 1850 | | set(handles.j1,'String',num2stra(j1,NomType,2)); |
| 1851 | | if isequal(j2,j1) |
| 1852 | | set(handles.j2,'String',''); |
| 1853 | | else |
| 1854 | | set(handles.j2,'String',num2stra(j2,NomType,2)); |
| 1855 | | end |
| 1856 | | indices=fullfile_uvmat('','','','',NomType,i1,i2,j1,j2); |
| 1857 | | set(handles.FileIndex,'String',indices); |
| 1858 | | if ~isempty(filename_1) |
| 1859 | | indices_1=fullfile_uvmat('','','','',InputFile.NomType_1,i1_1,i2_1,j1_1,j2_1); |
| 1860 | | set(handles.FileIndex_1,'String',indices_1); |
| 1861 | | end |
| 1862 | | if isequal(movie_status,1) |
| 1863 | | set(handles.movie_pair,'Value',1) |
| 1864 | | movie_pair_Callback(hObject, eventdata, handles); %reactivate moviepair if it was activated |
| 1865 | | else |
| 1866 | | if isempty(i2), set(handles.i2,'String',''); end % suppress the second index display if not used |
| 1867 | | if isempty(j2), set(handles.j2,'String',''); end |
| 1868 | | end |
| 1869 | | end |
| 1870 | | |
| 1871 | | %------------------------------------------------------------------------ |
| 1872 | | % --- Executes on button press in movie_pair: create an alternating movie with two view |
| 1873 | | function movie_pair_Callback(hObject, eventdata, handles) |
| 1874 | | %------------------------------------------------------------------------ |
| 1875 | | |
| 1876 | | %% stop movie action if the movie_pair button is off |
| 1877 | | if ~get(handles.movie_pair,'value') |
| 1878 | | set(handles.movie_pair,'BusyAction','Cancel')%stop movie pair if button is 'off' |
| 1879 | | set(handles.i2,'String','')% the second i index display is suppressed |
| 1880 | | set(handles.j2,'String','')% the second j index display is suppressed |
| 1881 | | set(handles.Dt_txt,'String','')% the time interval indication is suppressed |
| 1882 | | return |
| 1883 | | end |
| 1884 | | |
| 1885 | | %% check the input file indexing: |
| 1886 | | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
| 1887 | | NomType=get(handles.NomType,'String'); |
| 1888 | | if ~isempty(find(regexp(NomType,'-'))) |
| 1889 | | msgbox_uvmat('ERROR','The movie pair requires file series with a single index on the first input line') |
| 1890 | | return |
| 1891 | | end |
| 1892 | | filename=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt];% build the input file name (first line) |
| 1893 | | |
| 1894 | | set(handles.movie_pair,'BusyAction','queue')% |
| 1895 | | set(handles.CheckFixPair,'Value',1)% impose fixed pair (needed for function runpm) |
| 1896 | | set(handles.REFRESH,'BackgroundColor',[1 1 0])%paint the command button in yellow to indicate its activity |
| 1897 | | set(handles.movie_pair,'BackgroundColor',[1 1 0])%paint the command button in yellow to indicate its activity |
| 1898 | | drawnow |
| 1899 | | % list_fields=get(handles.FieldName,'String');% list menu fields |
| 1900 | | % index_fields=get(handles.FieldName,'Value');% selected string index |
| 1901 | | % FieldName=list_fields{index_fields}; % selected field |
| 1902 | | |
| 1903 | | |
| 1904 | | % if isequal(FieldName,'image') |
| 1905 | | % index=1; |
| 1906 | | |
| 1907 | | % else |
| 1908 | | % list_fields=get(handles.FieldName_1,'String');% list menu fields |
| 1909 | | % index_fields=get(handles.FieldName_1,'Value');% selected string index |
| 1910 | | % FieldName=list_fields{index_fields}; % selected field |
| 1911 | | % if isequal(FieldName,'image') |
| 1912 | | % index=2; |
| 1913 | | % [RootPath,SubDir,RootFile,FileIndex_1,Ext,NomType]=read_file_boxes_1(handles);% get info from the second input line |
| 1914 | | % else |
| 1915 | | % msgbox_uvmat('ERROR','an image or movie must be first introduced as input') |
| 1916 | | % set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
| 1917 | | % set(handles.movie_pair,'Value',0) |
| 1918 | | % return |
| 1919 | | % end |
| 1920 | | % end |
| 1921 | | num_i1=str2num(get(handles.i1,'String')); |
| 1922 | | num_j1=stra2num(get(handles.j1,'String')); |
| 1923 | | num_i2=str2num(get(handles.i2,'String')); |
| 1924 | | num_j2=stra2num(get(handles.j2,'String')); |
| 1925 | | |
| 1926 | | %% determine the name 'imaname_1' of the second file in the pair |
| 1927 | | imaname_1=''; |
| 1928 | | if isempty(num_j2)% no second j index indicated |
| 1929 | | if isempty(num_i2) |
| 1930 | | if strcmp(get(handles.j2,'Visible'),'on') %if the j box is visible |
| 1931 | | imaname_1=fullfile_uvmat(RootPath,SubDir,RootFile,FileExt,NomType,num_i1,[],num_j1+1); |
| 1932 | | end |
| 1933 | | if exist(imaname_1,'file') |
| 1934 | | num_j2=num_j1+1;% look by default for the next j index as the second file |
| 1935 | | set(handles.j2,'String',num2stra(num_j2,NomType)); |
| 1936 | | else |
| 1937 | | imaname_1=fullfile_uvmat(RootPath,SubDir,RootFile,FileExt,NomType,num_i1+1,[],num_j1); |
| 1938 | | if exist(imaname_1,'file') |
| 1939 | | num_i2=num_i1+1; |
| 1940 | | set(handles.i2,'String',num2str(num_i2)); |
| 1941 | | else |
| 1942 | | msgbox_uvmat('ERROR', 'a second image index i2 or j2 is needed to show the pair as a movie') |
| 1943 | | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
| 1944 | | set(handles.movie_pair,'Value',0) |
| 1945 | | return |
| 1946 | | end |
| 1947 | | end |
| 1948 | | else |
| 1949 | | num_j2=num_j1;%repeat the index i1 by default |
| 1950 | | end |
| 1951 | | end |
| 1952 | | if isempty(num_i2) |
| 1953 | | num_i2=num_i1;%repeat the index i1 by default |
| 1954 | | end |
| 1955 | | if isempty(num_j1) |
| 1956 | | num_j1=1; |
| 1957 | | end |
| 1958 | | if isempty(num_j2) |
| 1959 | | num_j2=num_j1;%repeat the index i1 by default |
| 1960 | | end |
| 1961 | | imaname_1=fullfile_uvmat(RootPath,SubDir,RootFile,FileExt,NomType,num_i2,[],num_j2); |
| 1962 | | if strcmp(NomType,'*') |
| 1963 | | num_frame=num_i2; |
| 1964 | | else |
| 1965 | | num_frame=num_j2; |
| 1966 | | end |
| 1967 | | if ~exist(imaname_1,'file') |
| 1968 | | msgbox_uvmat('ERROR',['second input open (-) ' imaname_1 ' not found']); |
| 1969 | | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
| 1970 | | set(handles.movie_pair,'Value',0) |
| 1971 | | return |
| 1972 | | end |
| 1973 | | |
| 1974 | | %% display the first field in the pair (including possibly a background field from second line input filename_1) |
| 1975 | | filename_1='';%default |
| 1976 | | FileIndex_1=''; |
| 1977 | | if get(handles.SubField,'Value') |
| 1978 | | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
| 1979 | | filename_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1]; |
| 1980 | | end |
| 1981 | | % num_i1=stra2num(get(handles.i1,'String')); |
| 1982 | | % num_i2=stra2num(get(handles.i2,'String')); |
| 1983 | | % num_j1=stra2num(get(handles.j1,'String')); |
| 1984 | | % num_j2=stra2num(get(handles.j2,'String')); |
| 1985 | | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(FileIndex_1);% get the indices of the second series from the string FileIndex_1 |
| 1986 | | if isempty(j1_1)% case of movies, the index is not given by file index |
| 1987 | | j1_1=num_j1; |
| 1988 | | end |
| 1989 | | |
| 1990 | | errormsg=refresh_field(handles,filename,filename_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1); |
| 1991 | | |
| 1992 | | if isempty(errormsg) |
| 1993 | | set(handles.REFRESH,'BackgroundColor',[1 0 0])% set button color to red, update successfull |
| 1994 | | else |
| 1995 | | msgbox_uvmat('ERROR',errormsg); |
| 1996 | | set(handles.REFRESH,'BackgroundColor',[1 0 1])% keep button color magenta, input not succesfull |
| 1997 | | end |
| 1998 | | UvData=get(handles.uvmat,'UserData'); |
| 1999 | | Field_a=UvData.Field;% movie on the field defined by the second input line |
| 2000 | | |
| 2001 | | %% display time interval for the image pair |
| 2002 | | if isfield(UvData,'XmlData')&&isfield(UvData.XmlData{1},'Time')... |
| 2003 | | && size(UvData.XmlData{1}.Time,1)>=num_i2+1 && size(UvData.XmlData{1}.Time,2)>=num_j2+1 |
| 2004 | | dt=(UvData.XmlData{1}.Time(num_i2+1,num_j2+1)-UvData.XmlData{1}.Time(num_i1+1,num_j1+1)); |
| 2005 | | if isfield(UvData,'TimeUnit') |
| 2006 | | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' m' UvData.TimeUnit] ) |
| 2007 | | else |
| 2008 | | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' 10^(-3)'] ) |
| 2009 | | end |
| 2010 | | else |
| 2011 | | set(handles.Dt_txt,'String','') |
| 2012 | | end |
| 2013 | | |
| 2014 | | %% read the second field |
| 2015 | | if isempty(UvData.MovieObject) |
| 2016 | | [Field_b,ParamOut,errormsg] = read_field(imaname_1,UvData.FileType{index},[],num_frame); |
| 2017 | | else |
| 2018 | | [Field_b,ParamOut,errormsg] = read_field(imaname_1,UvData.FileType{1},UvData.MovieObject{1},num_frame); |
| 2019 | | end |
| 2020 | | if ~isempty(errormsg) |
| 2021 | | msgbox_uvmat('ERROR',['Error in reading second image: ' errormsg]) |
| 2022 | | return |
| 2023 | | end |
| 2024 | | |
| 2025 | | %% apply phys or other transform on the two input fields |
| 2026 | | transform=get(handles.TransformPath,'UserData'); |
| 2027 | | if ~isempty(transform) |
| 2028 | | if isfield(UvData,'XmlData') && ~isempty(UvData.XmlData) %use geometry calib recorded from the ImaDoc xml file as first priority |
| 2029 | | if nargin(transform)>=2 |
| 2030 | | Field_b=transform(Field_b,UvData.XmlData{1}); |
| 2031 | | else |
| 2032 | | Field_b=transform(Field_b); |
| 2033 | | end |
| 2034 | | end |
| 2035 | | end |
| 2036 | | |
| 2037 | | %% make movie until movie speed is set to 0 or STOP is activated |
| 2038 | | hima=findobj(handles.PlotAxes,'Tag','ima');% %handles.PlotAxes =main plotting window (A GENERALISER) |
| 2039 | | set(handles.STOP,'Visible','on') |
| 2040 | | set(handles.speed,'Visible','on') |
| 2041 | | set(handles.speed_txt,'Visible','on') |
| 2042 | | while get(handles.speed,'Value')~=0 && isequal(get(handles.movie_pair,'BusyAction'),'queue') % enable STOP command |
| 2043 | | % read and plot the series of images in non erase mode |
| 2044 | | set(hima,'CData',Field_b.A); %TODO: generalise to other kinds of fields |
| 2045 | | pause(1.02-get(handles.speed,'Value'));% wait for next image |
| 2046 | | set(hima,'CData',Field_a.A); |
| 2047 | | pause(1.02-get(handles.speed,'Value'));% wait for next image |
| 2048 | | end |
| 2049 | | set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command button in red |
| 2050 | | set(handles.movie_pair,'Value',0) |
| 2051 | | set(handles.Dt_txt,'String','') |
| 2052 | | |
| 2053 | | %------------------------------------------------------------------------ |
| 2054 | | % --- Executes on button press in InputFileREFRESH. |
| 2055 | | function REFRESH_Callback(hObject, eventdata, handles) |
| 2056 | | %------------------------------------------------------------------------ |
| 2057 | | set(handles.REFRESH,'BackgroundColor',[1 1 0])%paint the REFRESH button in yellow to indicate its activity |
| 2058 | | drawnow |
| 2059 | | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles);%read the features of the input file name (first line) |
| 2060 | | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(FileIndex);% check back the indices used |
| 2061 | | if isempty(i2), set(handles.i2,'String',''); end % suppress the second i index display if not used |
| 2062 | | if isempty(j2), set(handles.j2,'String',''); end % suppress the second j index display if not used |
| 2063 | | filename=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt];% build the input file name (first line) |
| 2064 | | filename_1='';%default second file name |
| 2065 | | FileIndex_1=''; |
| 2066 | | if get(handles.SubField,'Value')% if a second file is introduced |
| 2067 | | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles);%read the features of the input file name (second line) |
| 2068 | | filename_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1]; %build the input file name (second line) |
| 2069 | | end |
| 2070 | | num_i1=stra2num(get(handles.i1,'String')); |
| 2071 | | num_i2=stra2num(get(handles.i2,'String')); |
| 2072 | | num_j1=stra2num(get(handles.j1,'String')); |
| 2073 | | num_j2=stra2num(get(handles.j2,'String')); |
| 2074 | | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(FileIndex_1);% get the indices of the second series from the string FileIndex_1 |
| 2075 | | if isempty(j1_1)% case of movies, the index is not given by file index |
| 2076 | | j1_1=num_j1; |
| 2077 | | end |
| 2078 | | % in case of movies the index is set by edit boxes i1 or j1 (case of movies indexed by index i) |
| 2079 | | errormsg=refresh_field(handles,filename,filename_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1); |
| 2080 | | ResizeFcn(handles.uvmat,[],handles) |
| 2081 | | if isempty(errormsg) |
| 2082 | | set(handles.REFRESH,'BackgroundColor',[1 0 0])% set button color to red, update successfull |
| 2083 | | else |
| 2084 | | msgbox_uvmat('ERROR',errormsg); |
| 2085 | | set(handles.REFRESH,'BackgroundColor',[1 0 1])% keep button color magenta, input not succesfull |
| 2086 | | end |
| 2087 | | |
| 2088 | | %------------------------------------------------------------------------ |
| 2089 | | % --- read the input files and inputfilerefresh all the plots, including projection. |
| 2090 | | % OUTPUT: |
| 2091 | | % errormsg: error message char string =[] by default |
| 2092 | | % INPUT: |
| 2093 | | % FileName: first input file (=[] in the absence of input file) |
| 2094 | | % FileName_1: second input file (=[] in the asbsence of second input file) |
| 2095 | | % num_i1,num_i2,num_j1,num_j2; frame indices |
| 2096 | | % i1_1,i2_1,j1_1,j2_1: frame indices for the second input file (needed if FileName_1 is not empty) |
| 2097 | | %------------------------------------------------------------------------ |
| 2098 | | function errormsg=refresh_field(handles,FileName,FileName_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1) |
| 2099 | | %------------------------------------------------------------------------ |
| 2100 | | |
| 2101 | | %% initialisation |
| 2102 | | pointer=get(handles.uvmat,'Pointer'); |
| 2103 | | if strcmp(pointer,'watch')% reinitialise the mouse if stuck to 'watch' |
| 2104 | | set(handles.CheckZoom,'Value',0) |
| 2105 | | pointer='arrow'; |
| 2106 | | end |
| 2107 | | set(handles.uvmat,'Pointer','watch') |
| 2108 | | drawnow |
| 2109 | | if ~exist('Field','var') |
| 2110 | | Field={}; |
| 2111 | | end |
| 2112 | | UvData=get(handles.uvmat,'UserData'); |
| 2113 | | if ishandle(handles.UVMAT_title) %remove title panel on uvmat |
| 2114 | | delete(handles.UVMAT_title) |
| 2115 | | end |
| 2116 | | |
| 2117 | | %% determine the main input file information for action |
| 2118 | | if ~exist(FileName,'file') |
| 2119 | | errormsg=['input file ' FileName ' does not exist']; |
| 2120 | | return |
| 2121 | | end |
| 2122 | | NomType=get(handles.NomType,'String'); |
| 2123 | | NomType_1=''; |
| 2124 | | if strcmp(get(handles.NomType_1,'Visible'),'on') |
| 2125 | | NomType_1=get(handles.NomType_1,'String'); |
| 2126 | | end |
| 2127 | | %update the z position index |
| 2128 | | mode_slice=get(handles.slices,'String'); |
| 2129 | | if strcmp(mode_slice,'volume') |
| 2130 | | z_index=num_j1; |
| 2131 | | set(handles.z_index,'String',num2str(z_index)) |
| 2132 | | else |
| 2133 | | nbslice=str2num(get(handles.num_NbSlice,'String')); |
| 2134 | | z_index=mod(num_i1-1,nbslice)+1; |
| 2135 | | set(handles.z_index,'String',num2str(z_index)) |
| 2136 | | end |
| 2137 | | % inputfilerefresh menu for save_mask if relevant |
| 2138 | | masknumber=get(handles.masklevel,'String'); |
| 2139 | | if length(masknumber)>=z_index |
| 2140 | | set(handles.masklevel,'Value',z_index) |
| 2141 | | end |
| 2142 | | |
| 2143 | | %% test for need of tps |
| 2144 | | check_proj_tps=0; |
| 2145 | | if (strcmp(UvData.FileType{1},'civdata')||strcmp(UvData.FileType{1},'civx')) |
| 2146 | | for iobj=1:numel(UvData.ProjObject) |
| 2147 | | if isfield(UvData.ProjObject{iobj},'ProjMode')&& strcmp(UvData.ProjObject{iobj}.ProjMode,'interp_tps') |
| 2148 | | check_proj_tps=1; |
| 2149 | | break |
| 2150 | | end |
| 2151 | | end |
| 2152 | | end |
| 2153 | | |
| 2154 | | %% read the first input field |
| 2155 | | ParamIn.ColorVar='';%default variable name for vector color |
| 2156 | | frame_index=1;%default |
| 2157 | | FieldName='';%default |
| 2158 | | VelType='';%default |
| 2159 | | switch UvData.FileType{1} |
| 2160 | | case {'civx','civdata','netcdf'}; |
| 2161 | | list_fields=get(handles.FieldName,'String');% list menu fields |
| 2162 | | FieldName= list_fields{get(handles.FieldName,'Value')}; % selected field |
| 2163 | | if ~strcmp(FieldName,'get_field...') |
| 2164 | | if get(handles.FixVelType,'Value') |
| 2165 | | VelTypeList=get(handles.VelType,'String'); |
| 2166 | | VelType=VelTypeList{get(handles.VelType,'Value')}; |
| 2167 | | end |
| 2168 | | end |
| 2169 | | % case of input vector field, get the scalar used for vector color |
| 2170 | | if ~isempty(regexp(FieldName,'^vec(')) |
| 2171 | | list_code=get(handles.ColorCode,'String');% list menu fields |
| 2172 | | index_code=get(handles.ColorCode,'Value');% selected string index |
| 2173 | | if ~strcmp(list_code{index_code},'black') && ~strcmp(list_code{index_code},'white') |
| 2174 | | list_code=get(handles.ColorScalar,'String');% list menu fields |
| 2175 | | index_code=get(handles.ColorScalar,'Value');% selected string index |
| 2176 | | ParamIn.ColorVar= list_code{index_code}; % selected field |
| 2177 | | end |
| 2178 | | end |
| 2179 | | case {'video','mmreader'} |
| 2180 | | ParamIn=UvData.MovieObject{1}; % movie object |
| 2181 | | if strcmp(NomType,'*') |
| 2182 | | frame_index=num_i1;%frame index from a single movies or multimage |
| 2183 | | else |
| 2184 | | frame_index=num_j1;% frame index from a set of indexed movies |
| 2185 | | end |
| 2186 | | case 'multimage' |
| 2187 | | if ~strcmp(NomType,'*') |
| 2188 | | MaxIndex_j_cell=get(handles.MaxIndex_j,'String'); |
| 2189 | | if num_j1>str2num(MaxIndex_j_cell{1}) |
| 2190 | | errormsg='specified frame index exceeds file content'; |
| 2191 | | return |
| 2192 | | else |
| 2193 | | frame_index=num_j1;%frame index for movies or multimage |
| 2194 | | end |
| 2195 | | else |
| 2196 | | MaxIndex_i_cell=get(handles.MaxIndex_i,'String'); |
| 2197 | | if num_i1>str2num(MaxIndex_i_cell{1}) |
| 2198 | | errormsg='specified frame index exceeds file content'; |
| 2199 | | return |
| 2200 | | else |
| 2201 | | frame_index=num_i1; |
| 2202 | | end |
| 2203 | | end |
| 2204 | | case 'vol' %TODO: update |
| 2205 | | if isfield(UvData.XmlData,'Npy') && isfield(UvData.XmlData,'Npx') |
| 2206 | | ParamIn.Npy=UvData.XmlData.Npy; |
| 2207 | | ParamIn.Npx=UvData.XmlData.Npx; |
| 2208 | | else |
| 2209 | | errormsg='Npx and Npy need to be defined in the xml file for volume images .vol'; |
| 2210 | | return |
| 2211 | | end |
| 2212 | | end |
| 2213 | | if isstruct (ParamIn) |
| 2214 | | ParamIn.FieldName=FieldName; |
| 2215 | | ParamIn.VelType=VelType; |
| 2216 | | ParamIn.Coord_x=get(handles.Coord_x,'String'); |
| 2217 | | ParamIn.Coord_y=get(handles.Coord_y,'String'); |
| 2218 | | ParamIn.Coord_z=get(handles.Coord_z,'String'); |
| 2219 | | TimeName=get(handles.TimeName,'String'); |
| 2220 | | r=regexp(TimeName,'^(?<type>(dim:)|(var:))','names');%look for 'var:' or 'dim:' at the beginning of time name |
| 2221 | | if ~isempty(r) |
| 2222 | | frame_index=num_i1;%time index chosen by i1 |
| 2223 | | if strcmp(r.type,'dim:') |
| 2224 | | ParamIn.TimeDimName=TimeName(5:end); |
| 2225 | | elseif strcmp(r.type,'var:') |
| 2226 | | ParamIn.TimeVarName=TimeName(5:end); |
| 2227 | | end |
| 2228 | | end |
| 2229 | | end |
| 2230 | | % check_tps = 0; |
| 2231 | | % if strcmp(UvData.FileType{1},'civdata')&&~strcmp(ParamIn.FieldName,'velocity')&&~strcmp(ParamIn.FieldName,'get_field...') |
| 2232 | | % check_tps=1;%tps needed to get the requested field |
| 2233 | | % end |
| 2234 | | [Field{1},ParamOut,errormsg] = read_field(FileName,UvData.FileType{1},ParamIn,frame_index); |
| 2235 | | if ~isempty(errormsg) |
| 2236 | | errormsg=['uvmat / refresh_field / read_field( ' FileName ') / ' errormsg]; |
| 2237 | | return |
| 2238 | | end |
| 2239 | | if isfield(ParamOut,'Npx')&& isfield(ParamOut,'Npy') |
| 2240 | | set(handles.num_Npx,'String',num2str(ParamOut.Npx));% display image size on the interface |
| 2241 | | set(handles.num_Npy,'String',num2str(ParamOut.Npy)); |
| 2242 | | end |
| 2243 | | Field{1}.ZIndex=z_index; %used for multiplane 3D calibration |
| 2244 | | |
| 2245 | | %% choose and read a second field FileName_1 if defined |
| 2246 | | VelType_1=[];%default |
| 2247 | | FieldName_1=[]; |
| 2248 | | ParamIn_1=[]; |
| 2249 | | ParamOut_1=[]; |
| 2250 | | frame_index_1=1; |
| 2251 | | if ~isempty(FileName_1) |
| 2252 | | if ~exist(FileName_1,'file') |
| 2253 | | errormsg=['second file ' FileName_1 ' does not exist']; |
| 2254 | | return |
| 2255 | | end |
| 2256 | | switch UvData.FileType{2} |
| 2257 | | case {'civx','civdata','netcdf'}; |
| 2258 | | list_fields=get(handles.FieldName_1,'String');% list menu fields |
| 2259 | | if ischar(list_fields),list_fields={list_fields};end |
| 2260 | | FieldName_1= list_fields{get(handles.FieldName_1,'Value')}; % selected field |
| 2261 | | if ~strcmp(FieldName,'get_field...') |
| 2262 | | if get(handles.FixVelType,'Value') |
| 2263 | | VelTypeList=get(handles.VelType_1,'String'); |
| 2264 | | VelType_1=VelTypeList{get(handles.VelType_1,'Value')};% read the velocity type. |
| 2265 | | end |
| 2266 | | end |
| 2267 | | if strcmp(FieldName_1,'velocity')&& strcmp(get(handles.ColorCode,'Visible'),'on') |
| 2268 | | list_code=get(handles.ColorCode,'String');% list menu fields |
| 2269 | | index_code=get(handles.ColorCode,'Value');% selected string index |
| 2270 | | if ~strcmp(list_code{index_code},'black') && ~strcmp(list_code{index_code},'white') |
| 2271 | | list_code=get(handles.ColorScalar,'String');% list menu fields |
| 2272 | | index_code=get(handles.ColorScalar,'Value');% selected string index |
| 2273 | | ParamIn_1.ColorVar= list_code{index_code}; % selected field for vector color display |
| 2274 | | end |
| 2275 | | end |
| 2276 | | case {'video','mmreader'} |
| 2277 | | ParamIn_1=UvData.MovieObject{2}; |
| 2278 | | if ~strcmp(NomType_1,'*') |
| 2279 | | frame_index_1=j1_1;%frame index for movies or multimage |
| 2280 | | else |
| 2281 | | frame_index_1=i1_1; |
| 2282 | | end |
| 2283 | | case 'multimage' |
| 2284 | | if strcmp(NomType_1,'*')%frame index for movies or multimage |
| 2285 | | frame_index_1=i1_1; |
| 2286 | | else |
| 2287 | | frame_index_1=j1_1; |
| 2288 | | end |
| 2289 | | case 'vol' %TODO: update |
| 2290 | | if isfield(UvData.XmlData,'Npy') && isfield(UvData.XmlData,'Npx') |
| 2291 | | ParamIn_1.Npy=UvData.XmlData.Npy; |
| 2292 | | ParamIn_1.Npx=UvData.XmlData.Npx; |
| 2293 | | else |
| 2294 | | errormsg='Npx and Npy need to be defined in the xml file for volume images .vol'; |
| 2295 | | return |
| 2296 | | end |
| 2297 | | end |
| 2298 | | if isequal(get(handles.NomType_1,'Visible'),'on') |
| 2299 | | NomType_1=get(handles.NomType_1,'String'); |
| 2300 | | else |
| 2301 | | NomType_1=get(handles.NomType,'String'); |
| 2302 | | end |
| 2303 | | test_keepdata_1=0;% test for keeping the previous stored data if the input files are unchanged |
| 2304 | | if ~isequal(NomType_1,'*')&& isfield(UvData,'FileName_1') |
| 2305 | | test_keepdata_1= strcmp(FileName_1,UvData.FileName_1) ; |
| 2306 | | end |
| 2307 | | if test_keepdata_1 |
| 2308 | | Field{2}=UvData.Field_1;% keep the stored field |
| 2309 | | ParamOut_1=UvData.ParamOut_1; |
| 2310 | | else |
| 2311 | | if isempty(ParamIn_1) || isstruct(ParamIn_1) |
| 2312 | | ParamIn_1.FieldName=FieldName_1; |
| 2313 | | ParamIn_1.VelType=VelType_1; |
| 2314 | | ParamIn_1.Coord_x=get(handles.Coord_x,'String'); |
| 2315 | | ParamIn_1.Coord_y=get(handles.Coord_y,'String'); |
| 2316 | | end |
| 2317 | | [Field{2},ParamOut_1,errormsg] = read_field(FileName_1,UvData.FileType{2},ParamIn_1,frame_index_1); |
| 2318 | | if ~isempty(errormsg) |
| 2319 | | errormsg=['error in reading ' FieldName_1 ' in ' FileName_1 ': ' errormsg]; |
| 2320 | | return |
| 2321 | | end |
| 2322 | | if isstruct(ParamOut_1)&&~strcmp(ParamOut_1.FieldName,'get_field...')&& (strcmp(UvData.FileType{2},'civdata')||strcmp(UvData.FileType{2},'civx'))... |
| 2323 | | &&~strcmp(ParamOut_1.FieldName,'velocity') && ~strcmp(ParamOut_1.FieldName,'get_field...') |
| 2324 | | if ~check_proj_tps |
| 2325 | | end |
| 2326 | | end |
| 2327 | | end |
| 2328 | | Field{2}.ZIndex=z_index;%used for multi-plane 3D calibration |
| 2329 | | end |
| 2330 | | |
| 2331 | | %% update uvmat interface |
| 2332 | | if isfield(ParamOut,'Npx') |
| 2333 | | set(handles.num_Npx,'String',num2str(ParamOut.Npx));% display image size on the interface |
| 2334 | | set(handles.num_Npy,'String',num2str(ParamOut.Npy)); |
| 2335 | | elseif isfield(ParamOut_1,'Npx') |
| 2336 | | set(handles.num_Npx,'String',num2str(ParamOut_1.Npx));% display image size on the interface |
| 2337 | | set(handles.num_Npy,'String',num2str(ParamOut_1.Npy)); |
| 2338 | | end |
| 2339 | | |
| 2340 | | %% update the display menu for the first velocity type (first menuline) |
| 2341 | | test_veltype=0; |
| 2342 | | if (strcmp(UvData.FileType{1},'civx')||strcmp(UvData.FileType{1},'civdata'))&& ~strcmp(FieldName,'get_field...') |
| 2343 | | test_veltype=1; |
| 2344 | | set(handles.VelType,'Visible','on') |
| 2345 | | set(handles.VelType_1,'Visible','on') |
| 2346 | | set(handles.FixVelType,'Visible','on') |
| 2347 | | menu=set_veltype_display(ParamOut.CivStage,UvData.FileType{1}); |
| 2348 | | index_menu=strcmp(ParamOut.VelType,menu);%look for VelType in the menu |
| 2349 | | index_val=find(index_menu,1); |
| 2350 | | if isempty(index_val) |
| 2351 | | index_val=1; |
| 2352 | | end |
| 2353 | | set(handles.VelType,'Value',index_val) |
| 2354 | | if ~get(handles.SubField,'value') |
| 2355 | | set(handles.VelType,'String',menu) |
| 2356 | | set(handles.VelType_1,'Value',1) |
| 2357 | | set(handles.VelType_1,'String',[{''};menu]) |
| 2358 | | end |
| 2359 | | else |
| 2360 | | set(handles.VelType,'Visible','off') |
| 2361 | | end |
| 2362 | | |
| 2363 | | %% update the display menu for the second velocity type (second menuline) |
| 2364 | | test_veltype_1=0; |
| 2365 | | if isempty(FileName_1) |
| 2366 | | elseif ~test_keepdata_1 |
| 2367 | | if (strcmp(UvData.FileType{2},'civx')||strcmp(UvData.FileType{2},'civdata'))&& ~strcmp(FieldName_1,'get_field...') |
| 2368 | | test_veltype_1=1; |
| 2369 | | set(handles.VelType_1,'Visible','on') |
| 2370 | | menu=set_veltype_display(ParamOut_1.CivStage,UvData.FileType{2}); |
| 2371 | | index_menu=strcmp(ParamOut_1.VelType,menu); |
| 2372 | | set(handles.VelType_1,'Value',1+find(index_menu,1)) |
| 2373 | | set(handles.VelType_1,'String',[{''};menu]) |
| 2374 | | else |
| 2375 | | set(handles.VelType_1,'Visible','off') |
| 2376 | | end |
| 2377 | | % update the second field menu: the same quantity |
| 2378 | | if isstruct(ParamOut_1) |
| 2379 | | % display the FieldName menu from the input file and pick the selected one: |
| 2380 | | FieldList=get(handles.FieldName_1,'String'); |
| 2381 | | field_index=strcmp(ParamOut_1.FieldName,FieldList); |
| 2382 | | if ~isempty(field_index) |
| 2383 | | set(handles.FieldName_1,'Value',find(field_index,1)) |
| 2384 | | end |
| 2385 | | end |
| 2386 | | end |
| 2387 | | if test_veltype||test_veltype_1 |
| 2388 | | set(handles.FixVelType,'Visible','on') |
| 2389 | | else |
| 2390 | | set(handles.FixVelType,'Visible','off') |
| 2391 | | end |
| 2392 | | |
| 2393 | | %% introduce w as background image by default for a new series (only for nbdim=2) |
| 2394 | | if ~isfield(UvData,'NewSeries') |
| 2395 | | UvData.NewSeries=1; |
| 2396 | | end |
| 2397 | | %put W as background image by default if NbDim=2: |
| 2398 | | if UvData.NewSeries && isequal(get(handles.SubField,'Value'),0) && isfield(Field{1},'W') && ~isempty(Field{1}.W) && ~isequal(Field{1}.NbDim,3); |
| 2399 | | set(handles.SubField,'Value',1); |
| 2400 | | set(handles.RootPath_1,'String','"') |
| 2401 | | set(handles.RootFile_1,'String','"') |
| 2402 | | set(handles.SubDir_1,'String','"'); |
| 2403 | | indices=fullfile_uvmat('','','','',NomType,num_i1,num_i2,num_j1,num_j2); |
| 2404 | | set(handles.FileIndex_1,'String',indices) |
| 2405 | | set(handles.FileExt_1,'String','"'); |
| 2406 | | set(handles.FieldName_1,'Visible','on'); |
| 2407 | | set(handles.FieldName_1,'Visible','on'); |
| 2408 | | set(handles.RootPath_1,'Visible','on') |
| 2409 | | set(handles.RootFile_1,'Visible','on') |
| 2410 | | set(handles.SubDir_1,'Visible','on'); |
| 2411 | | set(handles.FileIndex_1,'Visible','on'); |
| 2412 | | set(handles.FileExt_1,'Visible','on'); |
| 2413 | | set(handles.FieldName_1,'Visible','on'); |
| 2414 | | Field{1}.AName='w'; |
| 2415 | | end |
| 2416 | | |
| 2417 | | %% display time value of the current file |
| 2418 | | abstime=[];%default inputs |
| 2419 | | dt=[]; |
| 2420 | | TimeUnit=''; |
| 2421 | | if isfield(UvData,'TimeUnit') |
| 2422 | | TimeUnit=UvData.TimeUnit;%retrieve info from update_rootinfo |
| 2423 | | end |
| 2424 | | TimeName=get(handles.TimeName,'String'); |
| 2425 | | |
| 2426 | | % time from xml file or video movie |
| 2427 | | if strcmp(TimeName,'xml')||strcmp(TimeName,'video') |
| 2428 | | if isempty(num_i2)||isnan(num_i2) |
| 2429 | | num_i2=num_i1; |
| 2430 | | end |
| 2431 | | if isempty(num_j1)||isnan(num_j1) |
| 2432 | | num_j1=1; |
| 2433 | | end |
| 2434 | | if isempty(num_j2)||isnan(num_j2) |
| 2435 | | num_j2=num_j1; |
| 2436 | | end |
| 2437 | | siz=size(UvData.XmlData{1}.Time); |
| 2438 | | if ~isempty(num_i1)&& ~isempty(num_i2) && num_i1>=0 &&siz(1)>=max(num_i1+1,num_i2+1) && siz(2)>=max(num_j1+1,num_j2+1) |
| 2439 | | abstime=(UvData.XmlData{1}.Time(num_i1+1,num_j1+1)+UvData.XmlData{1}.Time(num_i2+1,num_j2+1))/2;%overset the time read from files |
| 2440 | | dt=(UvData.XmlData{1}.Time(num_i2+1,num_j2+1)-UvData.XmlData{1}.Time(num_i1+1,num_j1+1)); |
| 2441 | | Field{1}.Dt=dt; |
| 2442 | | if isfield(UvData.XmlData{1},'TimeUnit') |
| 2443 | | TimeUnit=UvData.XmlData{1}.TimeUnit; |
| 2444 | | end |
| 2445 | | end |
| 2446 | | end |
| 2447 | | |
| 2448 | | % time in the input file, not defined in a xml file or movie |
| 2449 | | if isempty(abstime) |
| 2450 | | if strcmp(TimeName,'civdata')||strcmp(TimeName,'civx') |
| 2451 | | abstime=Field{1}.Time; |
| 2452 | | elseif ~isempty(regexp(TimeName,'^att:', 'once')) |
| 2453 | | abstime=Field{1}.(TimeName(5:end));%the time is an attribute selected by get_file |
| 2454 | | if isfield(Field{1},[TimeName(5:end) 'Unit']) |
| 2455 | | TimeUnit=Field{1}.([TimeName(5:end) 'Unit']); |
| 2456 | | else |
| 2457 | | TimeUnit=''; |
| 2458 | | end |
| 2459 | | elseif ~isempty(regexp(TimeName,'^var:')) |
| 2460 | | abstime=Field{1}.(TimeName(5:end));%the time is a variale selected by get_file |
| 2461 | | % TODO: look for time unit attribute |
| 2462 | | elseif ~isempty(regexp(TimeName,'^dim:')) |
| 2463 | | abstime=str2num(get(handles.i1,'String')); |
| 2464 | | TimeUnit='index'; |
| 2465 | | end |
| 2466 | | if isfield(Field{1},'Dt') |
| 2467 | | dt=Field{1}.Dt;%dt read from the netcdf input file |
| 2468 | | elseif numel(Field)==2 && isfield(Field{2},'Dt')%dt obtained from the second field if not defined in the first |
| 2469 | | dt=Field{2}.Dt;%dt read from the netcdf input file |
| 2470 | | end |
| 2471 | | end |
| 2472 | | set(handles.TimeValue,'String',num2str(abstime)) |
| 2473 | | |
| 2474 | | %% display time value of the second current file if relevant |
| 2475 | | abstime_1=[]; |
| 2476 | | if ~isempty(FileName_1) |
| 2477 | | TimeName_1=get(handles.TimeName_1,'String');% indicate whether time is from xml or video |
| 2478 | | % time from xml file or video movie as a second file series |
| 2479 | | if strcmp(TimeName_1,'xml')||strcmp(TimeName_1,'video') |
| 2480 | | if numel(UvData.XmlData)==2 |
| 2481 | | if isempty(i2_1) |
| 2482 | | i2_1=num_i1; |
| 2483 | | end |
| 2484 | | if isempty(j1_1) |
| 2485 | | j1_1=1; |
| 2486 | | end |
| 2487 | | if isempty(j2_1) |
| 2488 | | j2_1=j1_1; |
| 2489 | | end |
| 2490 | | siz=size(UvData.XmlData{2}.Time); |
| 2491 | | if ~isempty(i1_1) && siz(1)>=max(i1_1+1,i2_1+1) && siz(2)>=max(j1_1+1,j2_1+1) |
| 2492 | | abstime_1=(UvData.XmlData{2}.Time(i1_1+1,j1_1+1)+UvData.XmlData{2}.Time(i2_1+1,j2_1+1))/2;%overset the time read from files |
| 2493 | | Field{2}.Dt=(UvData.XmlData{2}.Time(i2_1+1,j2_1+1)-UvData.XmlData{2}.Time(i1_1+1,j1_1+1)); |
| 2494 | | end |
| 2495 | | end |
| 2496 | | end |
| 2497 | | |
| 2498 | | % get time in the input file of the second series, not defined in a xml file or movie |
| 2499 | | if isempty(abstime_1) && numel(Field)==2 |
| 2500 | | if strcmp(TimeName_1,'civdata')||strcmp(TimeName_1,'civx') |
| 2501 | | abstime_1=Field{2}.Time; |
| 2502 | | elseif ~isempty(regexp(TimeName_1,'^att:')) ||~isempty(regexp(TimeName_1,'^dim:'))||~isempty(regexp(TimeName_1,'^var:')) |
| 2503 | | abstime_1=Field{2}.(TimeName_1(5:end));%the time is an attribute or variale selected by get_file |
| 2504 | | end |
| 2505 | | end |
| 2506 | | set(handles.TimeValue_1,'String',num2str(abstime_1,5)) |
| 2507 | | end |
| 2508 | | |
| 2509 | | if isempty(dt)||isequal(dt,0) |
| 2510 | | set(handles.Dt_txt,'String','') |
| 2511 | | else |
| 2512 | | if isempty(TimeUnit) |
| 2513 | | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' 10^(-3)'] ) |
| 2514 | | else |
| 2515 | | set(handles.Dt_txt,'String',['Dt=' num2str(1000*dt,3) ' m' TimeUnit] ) |
| 2516 | | end |
| 2517 | | end |
| 2518 | | |
| 2519 | | %% Time title with unit |
| 2520 | | if isempty(abstime)&&isempty(abstime_1) |
| 2521 | | Time_title=''; |
| 2522 | | else |
| 2523 | | Time_title='Time'; |
| 2524 | | if ~isempty(TimeUnit) |
| 2525 | | Time_title=['Time (' TimeUnit ')']; |
| 2526 | | end |
| 2527 | | end |
| 2528 | | set(handles.Time_title,'String',Time_title) |
| 2529 | | |
| 2530 | | %% store the current open names, fieldname and vel types in uvmat interface |
| 2531 | | UvData.FileName_1=FileName_1; |
| 2532 | | UvData.ParamOut_1=ParamOut_1; |
| 2533 | | if numel(Field)==2 |
| 2534 | | UvData.Field_1=Field{2}; %store the second field for possible use at next RUN |
| 2535 | | end |
| 2536 | | |
| 2537 | | %% apply coordinate transform or other user fct |
| 2538 | | transform=get(handles.TransformPath,'UserData'); |
| 2539 | | if isempty(transform) |
| 2540 | | UvData.Field=Field{1}; |
| 2541 | | else |
| 2542 | | XmlData=[];%default |
| 2543 | | XmlData_1=[];%default |
| 2544 | | if isfield(UvData,'XmlData')%use geometry calib recorded from the ImaDoc xml file as first priority |
| 2545 | | XmlData=UvData.XmlData{1}; |
| 2546 | | if numel(UvData.XmlData)==2 |
| 2547 | | XmlData_1=UvData.XmlData{2}; |
| 2548 | | end |
| 2549 | | end |
| 2550 | | switch nargin(transform) |
| 2551 | | case 4 |
| 2552 | | if length(Field)==2 |
| 2553 | | UvData.Field=transform(Field{1},XmlData,Field{2},XmlData_1); |
| 2554 | | else |
| 2555 | | UvData.Field=transform(Field{1},XmlData); |
| 2556 | | end |
| 2557 | | case 3 |
| 2558 | | if length(Field)==2 |
| 2559 | | UvData.Field=transform(Field{1},XmlData,Field{2}); |
| 2560 | | else |
| 2561 | | UvData.Field=transform(Field{1},XmlData); |
| 2562 | | end |
| 2563 | | case 2 |
| 2564 | | UvData.Field=transform(Field{1},XmlData); |
| 2565 | | case 1 |
| 2566 | | UvData.Field=transform(Field{1}); |
| 2567 | | end |
| 2568 | | end |
| 2569 | | |
| 2570 | | %% calculate tps coefficients if needed |
| 2571 | | UvData.Field=tps_coeff_field(UvData.Field,check_proj_tps); |
| 2572 | | |
| 2573 | | %% get bounds and dimensions of the input field |
| 2574 | | UvData.Field=find_field_bounds(UvData.Field); |
| 2575 | | |
| 2576 | | testnewseries=UvData.NewSeries; |
| 2577 | | UvData.NewSeries=0;% put to 0 the test for a new field series (set by RootPath_callback) |
| 2578 | | |
| 2579 | | %% reset the min and max of scalar if only the mask is displayed(TODO: check the need) |
| 2580 | | % if isfield(UvData,'Mask')&& ~isfield(UvData,'A') |
| 2581 | | % set(handles.num_MinA,'String','0') |
| 2582 | | % set(handles.num_MaxA,'String','255') |
| 2583 | | % end |
| 2584 | | |
| 2585 | | %% usual 1D (x,y) plots |
| 2586 | | if UvData.Field.NbDim<=1 |
| 2587 | | set(handles.Objects,'Visible','off') |
| 2588 | | [PlotType,PlotParamOut]=plot_field(UvData.Field,handles.PlotAxes,read_GUI(handles.uvmat)); |
| 2589 | | errormsg=fill_GUI(PlotParamOut,handles.uvmat); |
| 2590 | | for list={'Scalar','Vectors'} |
| 2591 | | if ~isfield(PlotParamOut,list{1}) |
| 2592 | | set(handles.(list{1}),'Visible','off') |
| 2593 | | end |
| 2594 | | end |
| 2595 | | set(handles.uvmat,'UserData',UvData) |
| 2596 | | %% 2D or 3D fieldname are generally projected |
| 2597 | | else |
| 2598 | | set(handles.Objects,'Visible','on') |
| 2599 | | |
| 2600 | | %% Plot the projections on the selected projection objects |
| 2601 | | %if no projection object exists, create a default one |
| 2602 | | if isempty(UvData.ProjObject{1}) |
| 2603 | | set(handles.ListObject,'Value',1) |
| 2604 | | set(handles.ListObject,'String',{'plane'}) |
| 2605 | | UvData.ProjObject{1}.Type='plane';%main plotting plane |
| 2606 | | UvData.ProjObject{1}.ProjMode='projection';%main plotting plane |
| 2607 | | UvData.ProjObject{1}.DisplayHandle.uvmat=[]; %plane not visible in uvmat |
| 2608 | | UvData.ProjObject{1}.DisplayHandle.view_field=[]; %plane not visible in uvmat |
| 2609 | | set(handles.ListObject_1,'Value',1) |
| 2610 | | set(handles.ListObject_1,'String',{'plane'}) |
| 2611 | | if UvData.Field.NbDim==3 %3D case |
| 2612 | | % ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
| 2613 | | % ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
| 2614 | | UvData.ProjObject{1}.NbDim=3;%test for 3D objects |
| 2615 | | UvData.ProjObject{1}.RangeZ=UvData.Field.CoordMesh;%main plotting plane |
| 2616 | | UvData.ProjObject{1}.Coord(1,3)=(UvData.Field.ZMin+UvData.Field.ZMax)/2;%section at a middle plane chosen |
| 2617 | | UvData.ProjObject{1}.Angle=[0 0 0]; |
| 2618 | | elseif isfield(UvData,'Z') |
| 2619 | | %multilevel case (single menuplane in a 3D space) |
| 2620 | | if isfield(UvData,'CoordType')&& isequal(UvData.CoordType,'phys') && isfield(UvData,'XmlData') |
| 2621 | | XmlData=UvData.XmlData{1}; |
| 2622 | | if isfield(XmlData,'PlanePos') |
| 2623 | | UvData.ProjObject{1}.Coord=XmlData.PlanePos(UvData.ZIndex,:); |
| 2624 | | end |
| 2625 | | if isfield(XmlData,'PlaneAngle') |
| 2626 | | siz=size(XmlData.PlaneAngle); |
| 2627 | | indangle=min(siz(1),UvData.ZIndex);%take first angle if a single angle is defined (translating scanning) |
| 2628 | | UvData.ProjObject{1}.PlaneAngle=XmlData.PlaneAngle(indangle,:); |
| 2629 | | end |
| 2630 | | elseif isfield(UvData,'ZIndex') |
| 2631 | | UvData.ProjObject{1}.ZObject=UvData.ZIndex; |
| 2632 | | end |
| 2633 | | end |
| 2634 | | end |
| 2635 | | IndexObj=get(handles.ListObject_1,'Value');%selected projection object for main view |
| 2636 | | if IndexObj> numel(UvData.ProjObject) |
| 2637 | | IndexObj=1;%select the first object if the selected one does not exist |
| 2638 | | set(handles.ListObject_1,'Value',1) |
| 2639 | | end |
| 2640 | | if get(handles.CheckViewField,'Value') |
| 2641 | | IndexObj_2=get(handles.ListObject,'Value');%selected projection object for view_field |
| 2642 | | if ~isequal(IndexObj_2,IndexObj(1)) |
| 2643 | | IndexObj(2)=IndexObj_2; |
| 2644 | | end |
| 2645 | | end |
| 2646 | | plot_handles{1}=handles; |
| 2647 | | if isfield(UvData,'plotaxes')%case of movies |
| 2648 | | haxes(1)=UvData.plotaxes; |
| 2649 | | else |
| 2650 | | haxes(1)=handles.PlotAxes; |
| 2651 | | end |
| 2652 | | PlotParam{1}=read_GUI(handles.uvmat); |
| 2653 | | %default settings if vectors not visible |
| 2654 | | if ~isfield(PlotParam{1},'Vectors') |
| 2655 | | PlotParam{1}.Vectors.MaxVec=1; |
| 2656 | | PlotParam{1}.Vectors.MinVec=0; |
| 2657 | | PlotParam{1}.Vectors.CheckFixVecColor=1; |
| 2658 | | PlotParam{1}.Vectors.ColCode1=0.33; |
| 2659 | | PlotParam{1}.Vectors.ColCode2=0.66; |
| 2660 | | PlotParam{1}.Vectors.ColorScalar={''}; |
| 2661 | | PlotParam{1}.Vectors.ColorCode= {'rgb'}; |
| 2662 | | end |
| 2663 | | %PosColorbar{1}=UvData.OpenParam.PosColorbar;%prescribe the colorbar position on the uvmat interface |
| 2664 | | |
| 2665 | | %% second projection object (view_field display) |
| 2666 | | if length( IndexObj)==2 |
| 2667 | | view_field_handle=findobj(allchild(0),'tag','view_field');%handles of the view_field GUI |
| 2668 | | if ~isempty(view_field_handle) |
| 2669 | | plot_handles{2}=guidata(view_field_handle); |
| 2670 | | haxes(2)=plot_handles{2}.PlotAxes; |
| 2671 | | PlotParam{2}=read_GUI(view_field_handle); |
| 2672 | | %PosColorbar{2}='*'; %TODO: deal with colorbar position on view_field |
| 2673 | | end |
| 2674 | | end |
| 2675 | | |
| 2676 | | %% loop on the projection objects: one or two |
| 2677 | | |
| 2678 | | for imap=1:numel(IndexObj) |
| 2679 | | iobj=IndexObj(imap); |
| 2680 | | if numel(UvData.ProjObject)<iobj |
| 2681 | | break |
| 2682 | | end |
| 2683 | | if UvData.Field.NbDim==3 |
| 2684 | | UvData.ProjObject{iobj}.NbDim=3;%test for 3D objects |
| 2685 | | if ~isfield(UvData.ProjObject{iobj},'RangeZ') |
| 2686 | | UvData.ProjObject{iobj}.RangeZ=UvData.Field.CoordMesh;%main plotting plane |
| 2687 | | end |
| 2688 | | if ~(isfield(UvData.ProjObject{iobj},'Coord') && UvData.ProjObject{iobj}.Coord(1,3)<UvData.Field.ZMax && UvData.ProjObject{iobj}.Coord(1,3)>UvData.Field.ZMin) |
| 2689 | | UvData.ProjObject{iobj}.Coord(1,3)=(UvData.Field.ZMin+UvData.Field.ZMax)/2;%section at a middle plane chosen |
| 2690 | | end |
| 2691 | | end |
| 2692 | | [ObjectData,errormsg]=proj_field(UvData.Field,UvData.ProjObject{iobj});% project field on the object |
| 2693 | | if ~isempty(errormsg) |
| 2694 | | return |
| 2695 | | end |
| 2696 | | if testnewseries |
| 2697 | | PlotParam{imap}.Scalar.CheckBW=[]; %B/W option depends on the input field (image or scalar) |
| 2698 | | if isfield(ObjectData,'CoordUnit') |
| 2699 | | PlotParam{imap}.Axes.CheckFixAspectRatio=1;% set x and y scaling equal if CoordUnit is defined (common unit for x and y) |
| 2700 | | PlotParam{imap}.Axes.AspectRatio=1; %set aspect ratio to 1 |
| 2701 | | end |
| 2702 | | end |
| 2703 | | %use of mask (TODO: check) |
| 2704 | | if isfield(ObjectData,'NbDim') && isequal(ObjectData.NbDim,2) && isfield(ObjectData,'Mask') && isfield(ObjectData,'A') |
| 2705 | | flag_mask=double(ObjectData.Mask>200);%=0 for masked regions |
| 2706 | | Coord_x=ObjectData.Coord_x;%x coordiantes for the scalar field |
| 2707 | | Coord_y=ObjectData.Coord_y;%y coordinates for the scalar field |
| 2708 | | MaskX=ObjectData.MaskX;%x coordiantes for the mask |
| 2709 | | MaskY=ObjectData.MaskY;%y coordiantes for the mask |
| 2710 | | if ~isequal(MaskX,Coord_x)||~isequal(MaskY,Coord_y) |
| 2711 | | nxy=size(flag_mask); |
| 2712 | | sizpx=(ObjectData.MaskX(end)-ObjectData.MaskX(1))/(nxy(2)-1);%size of a mask pixel |
| 2713 | | sizpy=(ObjectData.MaskY(1)-ObjectData.MaskY(end))/(nxy(1)-1); |
| 2714 | | x_mask=ObjectData.MaskX(1):sizpx:ObjectData.MaskX(end); % pixel x coordinates for image display |
| 2715 | | y_mask=ObjectData.MaskY(1):-sizpy:ObjectData.MaskY(end);% pixel x coordinates for image display |
| 2716 | | %project on the positions of the scalar |
| 2717 | | npxy=size(ObjectData.A); |
| 2718 | | dxy(1)=(ObjectData.Coord_y(end)-ObjectData.Coord_y(1))/(npxy(1)-1);%grid mesh in y |
| 2719 | | dxy(2)=(ObjectData.Coord_x(end)-ObjectData.Coord_x(1))/(npxy(2)-1);%grid mesh in x |
| 2720 | | xi=ObjectData.Coord_x(1):dxy(2):ObjectData.Coord_x(end); |
| 2721 | | yi=ObjectData.Coord_y(1):dxy(1):ObjectData.Coord_y(end); |
| 2722 | | [XI,YI]=meshgrid(xi,yi);% creates the matrix of regular coordinates |
| 2723 | | flag_mask = interp2(x_mask,y_mask,flag_mask,XI,YI); |
| 2724 | | end |
| 2725 | | AClass=class(ObjectData.A); |
| 2726 | | ObjectData.A=flag_mask.*double(ObjectData.A); |
| 2727 | | ObjectData.A=feval(AClass,ObjectData.A); |
| 2728 | | end |
| 2729 | | set(handles.uvmat,'UserData',UvData) |
| 2730 | | if ~isempty(ObjectData) |
| 2731 | | %PlotType='none'; %default |
| 2732 | | if imap==2 && isempty(view_field_handle) |
| 2733 | | view_field(ObjectData) |
| 2734 | | else |
| 2735 | | [PlotType,PlotParamOut]=plot_field(ObjectData,haxes(imap),PlotParam{imap}); |
| 2736 | | if imap==1 |
| 2737 | | errormsg=fill_GUI(PlotParamOut,handles.uvmat); |
| 2738 | | else |
| 2739 | | errormsg=fill_GUI(PlotParamOut,view_field_handle); |
| 2740 | | end |
| 2741 | | for list={'Scalar','Vectors'} |
| 2742 | | if ~isfield(PlotParamOut,list{1}) |
| 2743 | | set(plot_handles{imap}.(list{1}),'Visible','off') |
| 2744 | | end |
| 2745 | | end |
| 2746 | | if isfield(Field,'CoordMesh')&&~isempty(Field.CoordMesh) |
| 2747 | | ObjectData.CoordMesh=Field.CoordMesh; % gives an estimated mesh size (useful for mouse action on the plot) |
| 2748 | | end |
| 2749 | | end |
| 2750 | | end |
| 2751 | | end |
| 2752 | | |
| 2753 | | %% update the mask |
| 2754 | | if isequal(get(handles.CheckMask,'Value'),1)%if the mask option is on |
| 2755 | | update_mask(handles); |
| 2756 | | end |
| 2757 | | |
| 2758 | | %% prepare the menus of histograms and plot them (histogram of the whole volume in 3D case) |
| 2759 | | menu_histo=(UvData.Field.ListVarName)';%list of field variables to be displayed for the menu of histogram display |
| 2760 | | ind_skip=[]; |
| 2761 | | % nb_histo=1; |
| 2762 | | Ustring=''; |
| 2763 | | Vstring=''; |
| 2764 | | % suppress axes from the histogram menu |
| 2765 | | for ivar=1:numel(menu_histo)%l loop on field variables: |
| 2766 | | if isfield(UvData.Field,'VarAttribute') && numel(UvData.Field.VarAttribute)>=ivar && isfield(UvData.Field.VarAttribute{ivar},'Role') |
| 2767 | | Role=UvData.Field.VarAttribute{ivar}.Role; |
| 2768 | | switch Role |
| 2769 | | case {'coord_x','coord_y','coord_z','dimvar'} |
| 2770 | | ind_skip=[ind_skip ivar]; |
| 2771 | | case {'vector_x'} |
| 2772 | | Ustring=UvData.Field.ListVarName{ivar}; |
| 2773 | | ind_skip=[ind_skip ivar]; |
| 2774 | | case {'vector_y'} |
| 2775 | | Vstring=UvData.Field.ListVarName{ivar}; |
| 2776 | | ind_skip=[ind_skip ivar]; |
| 2777 | | end |
| 2778 | | end |
| 2779 | | DimCell=UvData.Field.VarDimName{ivar}; |
| 2780 | | DimName=''; |
| 2781 | | if ischar(DimCell) |
| 2782 | | DimName=DimCell; |
| 2783 | | elseif iscell(DimCell)&& numel(DimCell)==1 |
| 2784 | | DimName=DimCell{1}; |
| 2785 | | end |
| 2786 | | if strcmp(DimName,menu_histo{ivar}) |
| 2787 | | ind_skip=[ind_skip ivar]; |
| 2788 | | end |
| 2789 | | end |
| 2790 | | menu_histo(ind_skip)=[];% remove skipped items |
| 2791 | | if ~isempty(Ustring) |
| 2792 | | menu_histo=[{[Ustring ',' Vstring]};menu_histo];% add U, V at the beginning if they exist |
| 2793 | | end |
| 2794 | | |
| 2795 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 2796 | | % display menus and plot histograms |
| 2797 | | test_v=0; |
| 2798 | | if ~isempty(menu_histo) |
| 2799 | | set(handles.histo1_menu,'Value',1) |
| 2800 | | set(handles.histo1_menu,'String',menu_histo) |
| 2801 | | histo1_menu_Callback(handles.histo1_menu, [], handles)% plot first histogram |
| 2802 | | end |
| 2803 | | end |
| 2804 | | |
| 2805 | | if UvData.Field.NbDim==3 |
| 2806 | | set(handles.CheckEditObject,'Value',1) |
| 2807 | | CheckEditObject_Callback(handles.uvmat, [], handles) |
| 2808 | | end |
| 2809 | | %ResizeFcn(handles.uvmat,[],handles) |
| 2810 | | set(handles.uvmat,'Pointer',pointer) |
| 2811 | | |
| 2812 | | %------------------------------------------------------------------------ |
| 2813 | | function histo1_menu_Callback(hObject, eventdata, handles) |
| 2814 | | %-------------------------------------------- |
| 2815 | | %% get the current field stored in uvmat user data |
| 2816 | | UvData=get(handles.uvmat,'UserData'); |
| 2817 | | Field=UvData.Field; |
| 2818 | | |
| 2819 | | %% get from the menu 'histo1_menu' the name(s) of the fields to use |
| 2820 | | histo_menu=get(handles.histo1_menu,'String'); |
| 2821 | | histo_value=get(handles.histo1_menu,'Value'); |
| 2822 | | FieldName=histo_menu{histo_value}; |
| 2823 | | r=regexp(FieldName,'(?<var1>.*)(?<sep>,)(?<var2>.*)','names'); |
| 2824 | | FieldName_2=''; |
| 2825 | | if ~isempty(r) |
| 2826 | | FieldName=r.var1;% name of first variable |
| 2827 | | FieldName_2=r.var2;% name of second variable |
| 2828 | | end |
| 2829 | | if ~isfield(UvData.Field,FieldName) |
| 2830 | | msgbox_uvmat('ERROR',['no field ' FieldName ' for histogram']) |
| 2831 | | return |
| 2832 | | end |
| 2833 | | |
| 2834 | | %% extract the fields to use |
| 2835 | | % eliminate false data if relevant (false flag FF exists) |
| 2836 | | check_false=0; |
| 2837 | | if isfield(Field,'FF') && ~isempty(Field.FF) && isequal(size(Field.FF),size(Field.(FieldName))) |
| 2838 | | indsel=find(Field.FF==0);%find values marked as false |
| 2839 | | if ~isempty(indsel) |
| 2840 | | FieldHisto=Field.(FieldName)(indsel);%field of the first variable (U) |
| 2841 | | if ~isempty(FieldName_2) |
| 2842 | | if isfield(Field,'NbDim') && Field.NbDim==3 |
| 2843 | | FieldHisto(:,:,:,2)=Field.(FieldName_2)(indsel);%field of the second variable (U) |
| 2844 | | else |
| 2845 | | FieldHisto(:,:,2)=Field.(FieldName_2)(indsel);%field of the second variable (U) |
| 2846 | | end |
| 2847 | | end |
| 2848 | | check_false=1; |
| 2849 | | end |
| 2850 | | end |
| 2851 | | % no false data |
| 2852 | | if ~check_false |
| 2853 | | FieldHisto=Field.(FieldName);%field of the first variable (U) |
| 2854 | | if ~isempty(FieldName_2) |
| 2855 | | if isfield(Field,'NbDim') && Field.NbDim==3 |
| 2856 | | FieldHisto(:,:,:,2)=Field.(FieldName_2);%field of the second variable (V) |
| 2857 | | else |
| 2858 | | FieldHisto(:,:,2)=Field.(FieldName_2);%field of the second variable (V) |
| 2859 | | end |
| 2860 | | end |
| 2861 | | end |
| 2862 | | |
| 2863 | | %% calculate and plot histogram |
| 2864 | | if isempty(Field) |
| 2865 | | msgbox_uvmat('ERROR',['empty field ' FieldName]) |
| 2866 | | else |
| 2867 | | nxy=size(FieldHisto); |
| 2868 | | Amin=double(min(min(min(min(FieldHisto)))));%min of field value |
| 2869 | | Amax=double(max(max(max(max(FieldHisto)))));%max of field value |
| 2870 | | if isequal(Amin,Amax) |
| 2871 | | cla(handles.HistoAxes) |
| 2872 | | else |
| 2873 | | Histo.ListVarName={FieldName,'histo'}; |
| 2874 | | if isfield(Field,'NbDim') && isequal(Field.NbDim,3) |
| 2875 | | Histo.VarDimName={FieldName,FieldName}; %dimensions for the histogram |
| 2876 | | else |
| 2877 | | if numel(nxy)==2 |
| 2878 | | Histo.VarDimName={FieldName,FieldName}; %dimensions for the histogram |
| 2879 | | else |
| 2880 | | Histo.VarDimName={FieldName,{FieldName,'component'}}; %dimensions for the histogram |
| 2881 | | end |
| 2882 | | end |
| 2883 | | %unit |
| 2884 | | units=[]; %default |
| 2885 | | for ivar=1:numel(Field.ListVarName) |
| 2886 | | if strcmp(Field.ListVarName{ivar},FieldName) |
| 2887 | | if isfield(Field,'VarAttribute') && numel(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'units') |
| 2888 | | units=Field.VarAttribute{ivar}.units; |
| 2889 | | break |
| 2890 | | end |
| 2891 | | end |
| 2892 | | end |
| 2893 | | if ~isempty(units) |
| 2894 | | Histo.VarAttribute{1}.units=units; |
| 2895 | | end |
| 2896 | | Histo.(FieldName)=linspace(Amin,Amax,50); %absissa values for histo |
| 2897 | | if isfield(Field,'NbDim') && isequal(Field.NbDim,3) |
| 2898 | | C=reshape(double(FieldHisto),1,[]);% reshape in a vector |
| 2899 | | Histo.histo(:,1)=hist(C, Histo.(FieldName)); %calculate histogram |
| 2900 | | else |
| 2901 | | for col=1:size(FieldHisto,3) |
| 2902 | | B=FieldHisto(:,:,col); |
| 2903 | | C=reshape(double(B),1,nxy(1)*nxy(2));% reshape in a vector |
| 2904 | | Histo.histo(:,col)=hist(C, Histo.(FieldName)); %calculate histogram |
| 2905 | | end |
| 2906 | | end |
| 2907 | | plot_field(Histo,handles.HistoAxes); |
| 2908 | | hlegend=legend; |
| 2909 | | if isempty(FieldName_2) |
| 2910 | | set(hlegend,'String',FieldName) |
| 2911 | | else |
| 2912 | | set(hlegend,'String',{FieldName;FieldName_2}) |
| 2913 | | end |
| 2914 | | end |
| 2915 | | end |
| 2916 | | |
| 2917 | | %------------------------------------------------------------------------ |
| 2918 | | % --- translate coordinate to matrix index |
| 2919 | | %------------------------------------------------------------------------ |
| 2920 | | function [indx,indy]=pos2ind(x0,rangx0,nxy) |
| 2921 | | indx=1+round((nxy(2)-1)*(x0-rangx0(1))/(rangx0(2)-rangx0(1)));% index x of pixel |
| 2922 | | indy=1+round((nxy(1)-1)*(y12-rangy0(1))/(rangy0(2)-rangy0(1)));% index y of pixel |
| 2923 | | |
| 2924 | | %------------------------------------------------------------------------ |
| 2925 | | % --- Executes on button press in 'CheckZoom'. |
| 2926 | | %------------------------------------------------------------------------ |
| 2927 | | function CheckZoom_Callback(hObject, eventdata, handles) |
| 2928 | | |
| 2929 | | if get(handles.CheckZoom,'Value') |
| 2930 | | set(handles.CheckFixLimits,'Value',1)% propose by default fixed limits for the plotting axes |
| 2931 | | set(handles.CheckZoomFig,'Value',0)%desactivate zoom fig |
| 2932 | | end |
| 2933 | | |
| 2934 | | |
| 2935 | | %------------------------------------------------------------------------ |
| 2936 | | % --- Executes on button press in CheckZoomFig. |
| 2937 | | %------------------------------------------------------------------------ |
| 2938 | | function CheckZoomFig_Callback(hObject, eventdata, handles) |
| 2939 | | |
| 2940 | | if get(handles.CheckZoomFig,'Value') |
| 2941 | | set(handles.CheckZoom,'value',0) |
| 2942 | | end |
| 2943 | | |
| 2944 | | %------------------------------------------------------------------------ |
| 2945 | | % --- Executes on button press in 'CheckFixLimits'. |
| 2946 | | %------------------------------------------------------------------------ |
| 2947 | | function CheckFixLimits_Callback(hObject, eventdata, handles) |
| 2948 | | |
| 2949 | | if ~get(handles.CheckFixLimits,'Value') |
| 2950 | | update_plot(handles) |
| 2951 | | set(handles.CheckZoom,'Value',0) |
| 2952 | | end |
| 2953 | | |
| 2954 | | %------------------------------------------------------------------------ |
| 2955 | | % --- Executes on button press in CheckFixAspectRatio. |
| 2956 | | function CheckFixAspectRatio_Callback(hObject, eventdata, handles) |
| 2957 | | %------------------------------------------------------------------------ |
| 2958 | | update_plot(handles); |
| 2959 | | |
| 2960 | | %------------------------------------------------------------------------ |
| 2961 | | function num_AspectRatio_Callback(hObject, eventdata, handles) |
| 2962 | | %------------------------------------------------------------------------ |
| 2963 | | set(handles.CheckFixAspectRatio,'Value',1)% select the fixed aspect ratio button |
| 2964 | | update_plot(handles); |
| 2965 | | |
| 2966 | | %------------------------------------------------------------------------ |
| 2967 | | %----Executes on button press in 'record': records the current flags of manual correction. |
| 2968 | | %------------------------------------------------------------------------ |
| 2969 | | function record_Callback(hObject, eventdata, handles) |
| 2970 | | |
| 2971 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| 2972 | | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
| 2973 | | [erread,message]=fileattrib(FileName); |
| 2974 | | if ~isempty(message) && ~isequal(message.UserWrite,1) |
| 2975 | | msgbox_uvmat('ERROR',['no writting access to ' FileName]) |
| 2976 | | return |
| 2977 | | end |
| 2978 | | MenuVelType=get(handles.VelType,'String'); |
| 2979 | | test_civ2=strcmp(MenuVelType{get(handles.VelType,'Value')},'civ2'); |
| 2980 | | test_civ1=strcmp(MenuVelType{get(handles.VelType,'Value')},'civ1'); |
| 2981 | | if ~test_civ2 && ~test_civ1 |
| 2982 | | msgbox_uvmat('ERROR','manual correction only possible for CIV1 or CIV2 velocity fields') |
| 2983 | | end |
| 2984 | | if test_civ2 |
| 2985 | | nbname='nb_vec_2'; |
| 2986 | | flagname='Civ2_FF'; |
| 2987 | | CivStage=5; |
| 2988 | | end |
| 2989 | | if test_civ1 |
| 2990 | | nbname='nb_vec_1'; |
| 2991 | | flagname='Civ1_FF'; |
| 2992 | | CivStage=2; |
| 2993 | | end |
| 2994 | | %write fix flags in the netcdf file |
| 2995 | | UvData=get(handles.uvmat,'UserData'); |
| 2996 | | hhh=which('netcdf.open');% look for built-in matlab netcdf library |
| 2997 | | if ~isequal(hhh,'')% case of builtin Matlab netcdf library |
| 2998 | | nc=netcdf.open(FileName,'NC_WRITE'); |
| 2999 | | netcdf.reDef(nc); |
| 3000 | | netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'),'CivStage',CivStage); |
| 3001 | | dimid = netcdf.inqDimID(nc,nbname); |
| 3002 | | try |
| 3003 | | varid = netcdf.inqVarID(nc,flagname);% look for already existing fixflag variable |
| 3004 | | catch |
| 3005 | | varid=netcdf.defVar(nc,flagname,'double',dimid);%create fixflag variable if it does not exist |
| 3006 | | end |
| 3007 | | netcdf.endDef(nc); |
| 3008 | | netcdf.putVar(nc,varid,UvData.PlotAxes.FF); |
| 3009 | | netcdf.close(nc); |
| 3010 | | else %old netcdf library |
| 3011 | | netcdf_toolbox(FileName,AxeData,attrname,nbname,flagname) |
| 3012 | | end |
| 3013 | | |
| 3014 | | %------------------------------------------------------------------- |
| 3015 | | %----Correct the netcdf file, using toolbox (old versions of Matlab). |
| 3016 | | %------------------------------------------------------------------- |
| 3017 | | function netcdf_toolbox(FileName,AxeData,attrname,nbname,flagname) |
| 3018 | | nc=netcdf(FileName,'write'); %open netcdf file |
| 3019 | | result=redef(nc); |
| 3020 | | eval(['nc.' attrname '=1;']); |
| 3021 | | theDim=nc(nbname) ;% get the number of velocity vectors |
| 3022 | | nb_vectors=size(theDim); |
| 3023 | | var_FixFlag=ncvar(flagname,nc);% var_FixFlag will be written as the netcdf variable vec_FixFlag |
| 3024 | | var_FixFlag(1:nb_vectors)=AxeData.FF;% |
| 3025 | | fin=close(nc); |
| 3026 | | |
| 3027 | | %----------------------------------------------------------------------- |
| 3028 | | % --- Executes on button press in SubField |
| 3029 | | %----------------------------------------------------------------------- |
| 3030 | | function SubField_Callback(hObject, eventdata, handles) |
| 3031 | | |
| 3032 | | if get(handles.SubField,'Value')==0% if the subfield button is desactivated |
| 3033 | | desable_subfield(handles) |
| 3034 | | transform_fct_list=get(handles.TransformName,'String'); |
| 3035 | | transform_fct=transform_fct_list(get(handles.TransformName,'Value')); |
| 3036 | | if strcmp(transform_fct,'sub_field') |
| 3037 | | set(handles.TransformName,'Value',1)%suppress the sub_field transform |
| 3038 | | TransformName_Callback(hObject, eventdata, handles); |
| 3039 | | else |
| 3040 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3041 | | end |
| 3042 | | else |
| 3043 | | fileinput_1=uigetfile_uvmat('select a second input file:',get(handles.RootPath,'String')); |
| 3044 | | if isempty(fileinput_1) |
| 3045 | | set(handles.SubField,'Value',0) |
| 3046 | | else |
| 3047 | | % refresh the current displayed field |
| 3048 | | display_file_name(handles,fileinput_1,2) |
| 3049 | | |
| 3050 | | %update list of recent files in the menubar |
| 3051 | | MenuFile_1=fileinput_1; |
| 3052 | | MenuFile_2=get(handles.MenuFile_1,'Label'); |
| 3053 | | MenuFile_3=get(handles.MenuFile_2,'Label'); |
| 3054 | | MenuFile_4=get(handles.MenuFile_3,'Label'); |
| 3055 | | MenuFile_5=get(handles.MenuFile_4,'Label'); |
| 3056 | | set(handles.MenuFile_1,'Label',MenuFile_1) |
| 3057 | | set(handles.MenuFile_2,'Label',MenuFile_2) |
| 3058 | | set(handles.MenuFile_3,'Label',MenuFile_3) |
| 3059 | | set(handles.MenuFile_4,'Label',MenuFile_4) |
| 3060 | | set(handles.MenuFile_5,'Label',MenuFile_5) |
| 3061 | | end |
| 3062 | | end |
| 3063 | | |
| 3064 | | %----------------------------------------------------------------------- |
| 3065 | | % --- desactivate display used for a second file series |
| 3066 | | %----------------------------------------------------------------------- |
| 3067 | | function desable_subfield(handles) |
| 3068 | | |
| 3069 | | set(handles.RootPath_1,'String','') |
| 3070 | | set(handles.RootFile_1,'String','') |
| 3071 | | set(handles.SubDir_1,'String',''); |
| 3072 | | set(handles.FileIndex_1,'String',''); |
| 3073 | | set(handles.FileExt_1,'String',''); |
| 3074 | | set(handles.RootPath_1,'Visible','off') |
| 3075 | | set(handles.RootFile_1,'Visible','off') |
| 3076 | | set(handles.SubDir_1,'Visible','off'); |
| 3077 | | set(handles.NomType_1,'Visible','off'); |
| 3078 | | set(handles.FileIndex_1,'Visible','off'); |
| 3079 | | set(handles.FileExt_1,'Visible','off'); |
| 3080 | | set(handles.TimeName_1,'String',''); |
| 3081 | | set(handles.TimeName_1,'Visible','off'); |
| 3082 | | set(handles.TimeValue_1,'String',''); |
| 3083 | | set(handles.TimeValue_1,'Visible','off'); |
| 3084 | | set(handles.FieldName_1,'Value',1);%set to blank state |
| 3085 | | set(handles.VelType_1,'Value',1);%set to blank state |
| 3086 | | set(handles.num_Opacity,'String','')% desactivate opacity setting |
| 3087 | | FieldList=get(handles.FieldName,'String'); |
| 3088 | | if numel(FieldList)>1 % if a choice of fields exists |
| 3089 | | set(handles.FieldName_1,'Value',1)% set second field choice to blank |
| 3090 | | set(handles.FieldName_1,'String',[{''};FieldList])% reproduce the menu FieldName plus a blank option |
| 3091 | | else |
| 3092 | | set(handles.FieldName_1,'String',{''})% set second field choice to blank |
| 3093 | | end |
| 3094 | | if ~strcmp(get(handles.VelType,'Visible'),'on') |
| 3095 | | set(handles.VelType_1,'Visible','off') |
| 3096 | | end |
| 3097 | | UvData=get(handles.uvmat,'UserData'); |
| 3098 | | if isfield(UvData,'XmlData_1') |
| 3099 | | UvData=rmfield(UvData,'XmlData_1'); |
| 3100 | | end |
| 3101 | | set(handles.uvmat,'UserData',UvData); |
| 3102 | | |
| 3103 | | %------------------------------------------------------------------------ |
| 3104 | | % --- read the data displayed for the input rootfile windows (new): TODO use read_GUI |
| 3105 | | %------------------------------------------------------------------------ |
| 3106 | | function [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles) |
| 3107 | | |
| 3108 | | InputFile=read_GUI(handles.InputFile); |
| 3109 | | RootPath=InputFile.RootPath; |
| 3110 | | SubDir=regexprep(InputFile.SubDir,'/|\',''); |
| 3111 | | RootFile=regexprep(InputFile.RootFile,'/|\',''); |
| 3112 | | FileIndices=InputFile.FileIndex; |
| 3113 | | FileExt=InputFile.FileExt; |
| 3114 | | |
| 3115 | | |
| 3116 | | %------------------------------------------------------------------------ |
| 3117 | | % ---- read the data displayed for the second input rootfile windows |
| 3118 | | %------------------------------------------------------------------------ |
| 3119 | | function [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1,NomType_1]=read_file_boxes_1(handles) |
| 3120 | | |
| 3121 | | RootPath_1=get(handles.RootPath_1,'String'); % read the data from the file1_input window |
| 3122 | | if isequal(get(handles.RootPath_1,'Visible'),'off') || isequal(RootPath_1,'"') |
| 3123 | | RootPath_1=get(handles.RootPath,'String'); |
| 3124 | | end; |
| 3125 | | SubDir_1=get(handles.SubDir_1,'String'); |
| 3126 | | if isequal(get(handles.SubDir_1,'Visible'),'off')|| isequal(SubDir_1,'"') |
| 3127 | | SubDir_1=get(handles.SubDir,'String'); |
| 3128 | | end |
| 3129 | | SubDir_1=regexprep(SubDir_1,'\<[\\/]|[\\/]\>','');%suppress possible / or \ separator at the beginning or the end of the string |
| 3130 | | RootFile_1=get(handles.RootFile_1,'String'); |
| 3131 | | if isequal(get(handles.RootFile_1,'Visible'),'off') || isequal(RootFile_1,'"') |
| 3132 | | RootFile_1=get(handles.RootFile,'String'); |
| 3133 | | end |
| 3134 | | RootFile_1=regexprep(RootFile_1,'\<[\\/]|[\\/]\>','');%suppress possible / or \ separator at the beginning or the end of the string |
| 3135 | | FileIndex_1=get(handles.FileIndex_1,'String'); |
| 3136 | | if isequal(get(handles.FileIndex_1,'Visible'),'off')|| isequal(FileIndex_1,'"') |
| 3137 | | FileIndex_1=get(handles.FileIndex,'String'); |
| 3138 | | end |
| 3139 | | FileExt_1=get(handles.FileExt_1,'String'); |
| 3140 | | if isequal(get(handles.FileExt_1,'Visible'),'off') || isequal(FileExt_1,'"') |
| 3141 | | FileExt_1=get(handles.FileExt,'String');%read FileExt by default |
| 3142 | | end |
| 3143 | | NomType_1=get(handles.NomType_1,'String'); |
| 3144 | | if isequal(get(handles.NomType_1,'Visible'),'off') || isequal(NomType_1,'"') |
| 3145 | | NomType_1=get(handles.NomType,'String');%read FileExt by default |
| 3146 | | end |
| 3147 | | %------------------------------------------------------------------------ |
| 3148 | | % --- Executes on menu selection FieldName |
| 3149 | | |
| 3150 | | function FieldName_Callback(hObject, eventdata, handles) |
| 3151 | | %------------------------------------------------------------------------ |
| 3152 | | |
| 3153 | | %% read data from uvmat |
| 3154 | | UvData=get(handles.uvmat,'UserData'); |
| 3155 | | list_fields=get(handles.FieldName,'String');% list menu fields |
| 3156 | | index_fields=get(handles.FieldName,'Value');% selected string index |
| 3157 | | field= list_fields{index_fields(1)}; % selected string |
| 3158 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| 3159 | | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
| 3160 | | [tild,tild,tild,i1,i2,j1,j2,tild,NomType]=fileparts_uvmat(['xxx' get(handles.FileIndex,'String') FileExt]); |
| 3161 | | |
| 3162 | | switch field |
| 3163 | | case 'get_field...' |
| 3164 | | %% fill the axes and variables from selections in get_field |
| 3165 | | ParamIn.Title='get_field: choose input field for display in uvmat' ; |
| 3166 | | % in case of civ data, we use the civ choice as default input for the GUI get_field |
| 3167 | | if strcmp(get(handles.VelType,'Visible'),'on') |
| 3168 | | ParamIn.SwitchVarIndexTime='attribute'; |
| 3169 | | ListVelType=get(handles.VelType,'String'); |
| 3170 | | VelType=ListVelType{get(handles.VelType,'Value')}; |
| 3171 | | switch VelType |
| 3172 | | case 'civ1' |
| 3173 | | ParamIn.TimeAttrName='Civ1_Time'; |
| 3174 | | ParamIn.vector_x='Civ1_U'; |
| 3175 | | ParamIn.vector_y='Civ1_V'; |
| 3176 | | ParamIn.vec_color='Civ1_C'; |
| 3177 | | case 'filter1' |
| 3178 | | ParamIn.TimeAttrName='Civ1_Time'; |
| 3179 | | ParamIn.vector_x='Civ1_U_smooth'; |
| 3180 | | ParamIn.vector_y='Civ1_V_smooth'; |
| 3181 | | case 'civ2' |
| 3182 | | ParamIn.TimeAttrName='Civ2_Time'; |
| 3183 | | ParamIn.vector_x='Civ2_U'; |
| 3184 | | ParamIn.vector_y='Civ2_V'; |
| 3185 | | case 'filter2' |
| 3186 | | ParamIn.TimeAttrName='Civ2_Time'; |
| 3187 | | ParamIn.vector_x='Civ2_U_smooth'; |
| 3188 | | ParamIn.vector_y='Civ2_V_smooth'; |
| 3189 | | ParamIn.vec_color='Civ2_C'; |
| 3190 | | end |
| 3191 | | end |
| 3192 | | |
| 3193 | | % VelType menu desactivated |
| 3194 | | set(handles.FixVelType,'visible','off') |
| 3195 | | set(handles.VelType,'Visible','off') |
| 3196 | | |
| 3197 | | %read selection from get_field |
| 3198 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| 3199 | | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
| 3200 | | GetFieldData=get_field(FileName,ParamIn);% inport field names from the GUI get_field |
| 3201 | | FieldList={}; |
| 3202 | | VecColorList={''}; |
| 3203 | | ZName=''; |
| 3204 | | switch GetFieldData.FieldOption |
| 3205 | | case 'vectors' |
| 3206 | | UName=GetFieldData.PanelVectors.vector_x; |
| 3207 | | VName=GetFieldData.PanelVectors.vector_y; |
| 3208 | | YName=GetFieldData.Coordinates.Coord_y; |
| 3209 | | if isfield(GetFieldData.Coordinates,'Coord_z') |
| 3210 | | ZName=GetFieldData.Coordinates.Coord_z; |
| 3211 | | end |
| 3212 | | CName=GetFieldData.PanelVectors.vec_color; |
| 3213 | | FieldList={['vec(' UName ',' VName ')'];... |
| 3214 | | ['norm(' UName ',' VName ')'];... |
| 3215 | | UName;VName}; |
| 3216 | | VecColorList={['norm(' UName ',' VName ')'];... |
| 3217 | | UName;VName}; |
| 3218 | | if ~isempty(CName) |
| 3219 | | VecColorList=[{CName};VecColorList]; |
| 3220 | | end |
| 3221 | | case 'scalar' |
| 3222 | | AName=GetFieldData.PanelScalar.scalar; |
| 3223 | | YName=GetFieldData.Coordinates.Coord_y; |
| 3224 | | if isfield(GetFieldData.Coordinates,'Coord_z') |
| 3225 | | ZName=GetFieldData.Coordinates.Coord_z; |
| 3226 | | end |
| 3227 | | FieldList={AName}; |
| 3228 | | case '1D plot' |
| 3229 | | YName=GetFieldData.PanelOrdinate.ordinate; |
| 3230 | | case 'civdata...'%reinitiate input, return to automatic civ data reading |
| 3231 | | display_file_name(handles,FileName,1) |
| 3232 | | end |
| 3233 | | % get time as file index, attribute, variable or matrix index |
| 3234 | | if ~strcmp(GetFieldData.FieldOption,'civdata...') |
| 3235 | | XName=GetFieldData.Coordinates.Coord_x; |
| 3236 | | TimeNameStr=GetFieldData.Time.SwitchVarIndexTime; |
| 3237 | | switch TimeNameStr |
| 3238 | | case 'file index' |
| 3239 | | set(handles.TimeName,'String',''); |
| 3240 | | case 'attribute' |
| 3241 | | set(handles.TimeName,'String',['att:' GetFieldData.Time.TimeName]); |
| 3242 | | case 'variable' |
| 3243 | | set(handles.TimeName,'String',['var:' GetFieldData.Time.TimeName]) |
| 3244 | | set(handles.NomType,'String','*') |
| 3245 | | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
| 3246 | | set(handles.i1,'String','1')% set counter to 1 (now the time index in the input matrix) |
| 3247 | | MaxIndex_i=get(handles.MaxIndex_i,'String'); |
| 3248 | | MaxIndex_i{1}=num2str(GetFieldData.Time.TimeDimension); |
| 3249 | | set(handles.MaxIndex_i,'String',MaxIndex_i)%TODO: record time unit |
| 3250 | | UvData=get(handles.uvmat,'UserData'); |
| 3251 | | UvData.TimeUnit=GetFieldData.Time.TimeUnit; |
| 3252 | | set(handles.uvmat,'UserData',UvData); |
| 3253 | | set(handles.FileIndex,'String','') |
| 3254 | | ParamIn.TimeVarName=GetFieldData.Time.TimeName; |
| 3255 | | case 'matrix index' |
| 3256 | | set(handles.TimeName,'String',['dim:' GetFieldData.Time.TimeName]); |
| 3257 | | set(handles.NomType,'String','*') |
| 3258 | | set(handles.RootFile,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
| 3259 | | set(handles.i1,'String','1')% set counter to 1 (now the time index in the input matrix) |
| 3260 | | MaxIndex_i=get(handles.MaxIndex_i,'String'); |
| 3261 | | MaxIndex_i{1}=num2str(GetFieldData.Time.TimeDimension); |
| 3262 | | set(handles.MaxIndex_i,'String',MaxIndex_i)%TODO: record time unit |
| 3263 | | UvData=get(handles.uvmat,'UserData'); |
| 3264 | | UvData.TimeUnit=GetFieldData.Time.TimeUnit; |
| 3265 | | set(handles.uvmat,'UserData',UvData); |
| 3266 | | set(handles.FileIndex,'String','') |
| 3267 | | ParamIn.TimeDimName=GetFieldData.Time.TimeName; |
| 3268 | | end |
| 3269 | | set(handles.Coord_x,'String',XName) |
| 3270 | | % if ischar(YName) |
| 3271 | | % YName={YName}; |
| 3272 | | % end |
| 3273 | | set(handles.Coord_y,'String',YName) |
| 3274 | | set(handles.Coord_z,'String',ZName) |
| 3275 | | set(handles.FieldName,'Value',1) |
| 3276 | | set(handles.FieldName,'String',[FieldList; {'get_field...'}]); |
| 3277 | | set(handles.ColorScalar,'Value',1) |
| 3278 | | set(handles.ColorScalar,'String',VecColorList); |
| 3279 | | UvData.FileType{1}='netcdf'; |
| 3280 | | set(handles.uvmat,'UserData',UvData) |
| 3281 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3282 | | end |
| 3283 | | |
| 3284 | | case 'image' |
| 3285 | | %% look for image corresponding to civ data |
| 3286 | | if isfield(UvData.Field,'Civ2_ImageA')%get the corresponding input image in the netcdf file |
| 3287 | | imagename=UvData.Field.Civ2_ImageA; |
| 3288 | | elseif isfield(UvData.Field,'Civ1_ImageA')% |
| 3289 | | imagename=UvData.Field.Civ1_ImageA; |
| 3290 | | else |
| 3291 | | SubDirBase=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
| 3292 | | imagename=fullfile_uvmat(RootPath,SubDirBase,RootFile,'.png',NomType,i1,[],j1,[]); |
| 3293 | | end |
| 3294 | | if ~exist(imagename,'file') |
| 3295 | | imagename=uigetfile_uvmat('Pick an image file',imagename,'image'); |
| 3296 | | if isempty(imagename) |
| 3297 | | return |
| 3298 | | end |
| 3299 | | end |
| 3300 | | % display the selected field and related information |
| 3301 | | display_file_name(handles,imagename)%display the image |
| 3302 | | otherwise |
| 3303 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3304 | | end |
| 3305 | | |
| 3306 | | %---------------------------------------------------------------- |
| 3307 | | % --- Executes on menu selection FieldName |
| 3308 | | function FieldName_1_Callback(hObject, eventdata, handles) |
| 3309 | | %------------------------------------------------- |
| 3310 | | |
| 3311 | | %%%%%% TODO: modify like FieldName_Callback |
| 3312 | | %% read input data |
| 3313 | | check_new=~get(handles.SubField,'Value'); %check_new=1 if a second field was not previously entered |
| 3314 | | UvData=get(handles.uvmat,'UserData'); |
| 3315 | | if check_new && isfield(UvData,'XmlData') |
| 3316 | | UvData.XmlData{2}=UvData.XmlData{1}; |
| 3317 | | end |
| 3318 | | if isfield(UvData,'Field_1') |
| 3319 | | UvData=rmfield(UvData,'Field_1');% remove the stored second field (a new one needs to be read) |
| 3320 | | end |
| 3321 | | UvData.FileName_1='';% desactivate the use of a constant second file |
| 3322 | | list_fields=get(handles.FieldName,'String');% list menu fields |
| 3323 | | field= list_fields{get(handles.FieldName,'Value')}; % selected string |
| 3324 | | list_fields=get(handles.FieldName_1,'String');% list menu fields |
| 3325 | | field_1= list_fields{get(handles.FieldName_1,'Value')}; % selected string for the second field |
| 3326 | | if isempty(field_1)%||(numel(UvData.FileType)>=2 && strcmp(UvData.FileType{2},'image')) |
| 3327 | | set(handles.SubField,'Value',0) |
| 3328 | | SubField_Callback(hObject, eventdata, handles) |
| 3329 | | return |
| 3330 | | else |
| 3331 | | set(handles.SubField,'Value',1)%state that a second field is now entered |
| 3332 | | end |
| 3333 | | |
| 3334 | | %% read the rootfile input display |
| 3335 | | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
| 3336 | | FileName_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1]; |
| 3337 | | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(get(handles.FileIndex,'String')); |
| 3338 | | switch field_1 |
| 3339 | | case 'get_field...' |
| 3340 | | %% fill the axes and variables from selections in get_field |
| 3341 | | ParamIn=[]; |
| 3342 | | % in case of civ data, we use the civ choice as default input for the GUI get_field |
| 3343 | | if strcmp(get(handles.VelType_1,'Visible'),'on') |
| 3344 | | ParamIn.SwitchVarIndexTime='attribute'; |
| 3345 | | ListVelType=get(handles.VelType_1,'String'); |
| 3346 | | VelType=ListVelType{get(handles.VelType_1,'Value')}; |
| 3347 | | switch VelType |
| 3348 | | case 'civ1' |
| 3349 | | ParamIn.TimeAttrName='Civ1_Time'; |
| 3350 | | ParamIn.vector_x='Civ1_U'; |
| 3351 | | ParamIn.vector_y='Civ1_V'; |
| 3352 | | ParamIn.vec_color='Civ1_C'; |
| 3353 | | case 'filter1' |
| 3354 | | ParamIn.TimeAttrName='Civ1_Time'; |
| 3355 | | ParamIn.vector_x='Civ1_U_smooth'; |
| 3356 | | ParamIn.vector_y='Civ1_V_smooth'; |
| 3357 | | case 'civ2' |
| 3358 | | ParamIn.TimeAttrName='Civ2_Time'; |
| 3359 | | ParamIn.vector_x='Civ2_U'; |
| 3360 | | ParamIn.vector_y='Civ2_V'; |
| 3361 | | case 'filter2' |
| 3362 | | ParamIn.TimeAttrName='Civ2_Time'; |
| 3363 | | ParamIn.vector_x='Civ2_U_smooth'; |
| 3364 | | ParamIn.vector_y='Civ2_V_smooth'; |
| 3365 | | ParamIn.vec_color='Civ2_C'; |
| 3366 | | end |
| 3367 | | end |
| 3368 | | |
| 3369 | | % VelType menu desactivated |
| 3370 | | set(handles.FixVelType,'visible','off') |
| 3371 | | set(handles.VelType,'Visible','off') |
| 3372 | | |
| 3373 | | %read selection from get_field |
| 3374 | | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| 3375 | | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndices FileExt]; |
| 3376 | | GetFieldData=get_field(FileName,ParamIn);% inport field names from the GUI get_field |
| 3377 | | FieldList={}; |
| 3378 | | VecColorList={}; |
| 3379 | | switch GetFieldData.FieldOption |
| 3380 | | case 'vectors' |
| 3381 | | UName=GetFieldData.PanelVectors.vector_x; |
| 3382 | | VName=GetFieldData.PanelVectors.vector_y; |
| 3383 | | YName=GetFieldData.Coordinates.Coord_y; |
| 3384 | | CName=GetFieldData.PanelVectors.vec_color; |
| 3385 | | FieldList={['vec(' UName ',' VName ')'];... |
| 3386 | | ['norm(' UName ',' VName ')'];... |
| 3387 | | UName;VName}; |
| 3388 | | VecColorList={['norm(' UName ',' VName ')'];... |
| 3389 | | UName;VName}; |
| 3390 | | if ~isempty(CName) |
| 3391 | | VecColorList=[{CName};VecColorList]; |
| 3392 | | end |
| 3393 | | case 'scalar' |
| 3394 | | AName=GetFieldData.PanelScalar.scalar; |
| 3395 | | YName=GetFieldData.Coordinates.Coord_y; |
| 3396 | | FieldList={AName}; |
| 3397 | | case '1D plot' |
| 3398 | | YName=GetFieldData.PanelOrdinate.ordinate; |
| 3399 | | case 'civdata...'%reinitiate input, return to automatic civ data reading |
| 3400 | | display_file_name(handles,FileName,1) |
| 3401 | | end |
| 3402 | | if ~strcmp(GetFieldData.FieldOption,'civdata...') |
| 3403 | | XName=GetFieldData.Coordinates.Coord_x; |
| 3404 | | TimeNameStr=GetFieldData.Time.SwitchVarIndexTime; |
| 3405 | | switch TimeNameStr |
| 3406 | | case 'file index' |
| 3407 | | set(handles.TimeName_1,'String',''); |
| 3408 | | case 'attribute' |
| 3409 | | set(handles.TimeName_1,'String',['att:' GetFieldData.Time.TimeName]); |
| 3410 | | case 'variable' |
| 3411 | | set(handles.TimeName_1,'String',['var:' GetFieldData.Time.TimeName]) |
| 3412 | | set(handles.NomType_1,'String','*') |
| 3413 | | set(handles.RootFile_1,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
| 3414 | | set(handles.FileIndex_1,'String','') |
| 3415 | | ParamIn.TimeVarName=GetFieldData.Time.TimeName; |
| 3416 | | case 'matrix_index' |
| 3417 | | set(handles.TimeName_1,'String',['dim:' GetFieldData.Time.TimeName]); |
| 3418 | | set(handles.NomType_1,'String','*') |
| 3419 | | set(handles.RootFile_1,'String',[get(handles.RootFile,'String') get(handles.FileIndex,'String')]) |
| 3420 | | set(handles.FileIndex_1,'String','') |
| 3421 | | ParamIn.TimeDimName_1=GetFieldData.Time.TimeName; |
| 3422 | | end |
| 3423 | | set(handles.Coord_x,'String',XName) |
| 3424 | | % if ischar(YName) |
| 3425 | | % YName={YName}; |
| 3426 | | % end |
| 3427 | | set(handles.Coord_y,'String',YName) |
| 3428 | | set(handles.FieldName_1,'Value',1) |
| 3429 | | set(handles.FieldName_1,'String',[FieldList; {'get_field...'}]); |
| 3430 | | set(handles.ColorScalar,'Value',1) |
| 3431 | | set(handles.ColorScalar,'String',VecColorList); |
| 3432 | | UvData.FileType{2}='netcdf'; |
| 3433 | | set(handles.uvmat,'UserData',UvData) |
| 3434 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3435 | | end |
| 3436 | | |
| 3437 | | % set_veltype_display(0) % no veltype display |
| 3438 | | % hget_field=findobj(allchild(0),'name','get_field_1'); |
| 3439 | | % if ~isempty(hget_field) |
| 3440 | | % delete(hget_field) |
| 3441 | | % end |
| 3442 | | % hget_field=get_field(FileName_1); |
| 3443 | | % set(hget_field,'name','get_field_1') |
| 3444 | | % hhget_field=guidata(hget_field); |
| 3445 | | % set(hhget_field.list_fig,'Value',1) |
| 3446 | | % set(hhget_field.list_fig,'String',{'uvmat'}) |
| 3447 | | % if check_new |
| 3448 | | % UvData.FileType{2}=UvData.FileType{1}; |
| 3449 | | % set(handles.FileIndex_1,'String',get(handles.FileIndex,'String')) |
| 3450 | | % set(handles.uvmat,'UserData',UvData) |
| 3451 | | % end |
| 3452 | | case 'image' |
| 3453 | | %% look for image corresponding to civ data |
| 3454 | | imagename=''; |
| 3455 | | if isfield(UvData.Field,'Civ2_ImageA')%get the corresponding input image in the netcdf file |
| 3456 | | imagename=UvData.Field.Civ2_ImageA; |
| 3457 | | elseif isfield(UvData.Field,'Civ1_ImageA')% |
| 3458 | | imagename=UvData.Field.Civ1_ImageA; |
| 3459 | | else |
| 3460 | | SubDirBase=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
| 3461 | | imagename=fullfile_uvmat(RootPath,SubDirBase,RootFile,'.png',NomType,i1,[],j1,[]); |
| 3462 | | end |
| 3463 | | if ~exist(imagename,'file') |
| 3464 | | imagename=uigetfile_uvmat('Pick an image file',imagename,'image'); |
| 3465 | | |
| 3466 | | end |
| 3467 | | if isempty(imagename) |
| 3468 | | set(handles.SubField,'Value',0) |
| 3469 | | return |
| 3470 | | else |
| 3471 | | display_file_name(handles,imagename,2)%display the image as second field |
| 3472 | | end |
| 3473 | | otherwise |
| 3474 | | check_refresh=1; |
| 3475 | | if check_new% if a second field was not previously entered, we just read another field in the first input file |
| 3476 | | set(handles.FileIndex_1,'String',get(handles.FileIndex,'String')) |
| 3477 | | set(handles.FileExt_1,'String',get(handles.FileExt,'String')) |
| 3478 | | |
| 3479 | | UvData.FileType{2}=UvData.FileType{1}; |
| 3480 | | UvData.XmlData{2}= UvData.XmlData{1}; |
| 3481 | | transform=get(handles.TransformPath,'UserData'); |
| 3482 | | if (~isa(transform,'function_handle')||nargin(transform)<3) |
| 3483 | | set(handles.uvmat,'UserData',UvData) |
| 3484 | | set(handles.TransformName,'value',2); % set transform fct to 'sub_field' if the current fct does not accept two input fields |
| 3485 | | TransformName_Callback(hObject, eventdata, handles)% activate transform_fct_Callback and refresh current plot |
| 3486 | | check_refresh=0; |
| 3487 | | end |
| 3488 | | end |
| 3489 | | if ~isequal(field,'image') |
| 3490 | | set(handles.TitleNpxy,'Visible','off')% visible npx,pxcm... buttons |
| 3491 | | set(handles.num_Npx,'Visible','off') |
| 3492 | | set(handles.num_Npy,'Visible','off') |
| 3493 | | end |
| 3494 | | set(handles.uvmat,'UserData',UvData) |
| 3495 | | |
| 3496 | | if check_refresh && ~(isfield(UvData,'NewSeries')&&isequal(UvData.NewSeries,1)) |
| 3497 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3498 | | end |
| 3499 | | end |
| 3500 | | |
| 3501 | | %------------------------------------------------------------------------ |
| 3502 | | % --- set the visibility of relevant velocity type menus: |
| 3503 | | function menu=set_veltype_display(Civ,FileType) |
| 3504 | | %------------------------------------------------------------------------ |
| 3505 | | if ~exist('FileType','var') |
| 3506 | | FileType='civx'; |
| 3507 | | end |
| 3508 | | switch FileType |
| 3509 | | case 'civx' |
| 3510 | | menu={'civ1';'interp1';'filter1';'civ2';'interp2';'filter2'}; |
| 3511 | | if isequal(Civ,0) |
| 3512 | | imax=0; |
| 3513 | | elseif isequal(Civ,1) || isequal(Civ,2) |
| 3514 | | imax=1; |
| 3515 | | elseif isequal(Civ,3) |
| 3516 | | imax=3; |
| 3517 | | elseif isequal(Civ,4) || isequal(Civ,5) |
| 3518 | | imax=4; |
| 3519 | | elseif isequal(Civ,6) %patch2 |
| 3520 | | imax=6; |
| 3521 | | end |
| 3522 | | case 'civdata' |
| 3523 | | menu={'civ1';'filter1';'civ2';'filter2'}; |
| 3524 | | if isequal(Civ,0) |
| 3525 | | imax=0; |
| 3526 | | elseif isequal(Civ,1) || isequal(Civ,2) |
| 3527 | | imax=1; |
| 3528 | | elseif isequal(Civ,3) |
| 3529 | | imax=2; |
| 3530 | | elseif isequal(Civ,4) || isequal(Civ,5) |
| 3531 | | imax=3; |
| 3532 | | elseif isequal(Civ,6) %patch2 |
| 3533 | | imax=4; |
| 3534 | | end |
| 3535 | | end |
| 3536 | | menu=menu(1:imax); |
| 3537 | | |
| 3538 | | %------------------------------------------------------------------------ |
| 3539 | | % --- Executes on button press in FixVelType. |
| 3540 | | function FixVelType_Callback(hObject, eventdata, handles) |
| 3541 | | %------------------------------------------------------------------------ |
| 3542 | | % inputfilerefresh the current plot if the fixed veltype is unselected |
| 3543 | | if ~get(handles.FixVelType,'Value') |
| 3544 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3545 | | end |
| 3546 | | |
| 3547 | | %------------------------------------------------------------------------ |
| 3548 | | % --- Executes on button press in VelType. |
| 3549 | | function VelType_Callback(hObject, eventdata, handles) |
| 3550 | | %------------------------------------------------------------------------ |
| 3551 | | set(handles.FixVelType,'Value',1) |
| 3552 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3553 | | |
| 3554 | | %------------------------------------------------------------------------ |
| 3555 | | % --- Executes on choice selection in VelType_1. |
| 3556 | | function VelType_1_Callback(hObject, eventdata, handles) |
| 3557 | | %------------------------------------------------------------------------ |
| 3558 | | set(handles.FixVelType,'Value',1)% the velocity type is now imposed by the GUI (not automatic) |
| 3559 | | UvData=get(handles.uvmat,'UserData'); |
| 3560 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])%paint REFRESH button in yellow to indicate its activation |
| 3561 | | drawnow |
| 3562 | | InputFile=read_GUI(handles.InputFile);% read the input file parameters |
| 3563 | | [RootPath,SubDir,RootFile,FileIndex,FileExt]=read_file_boxes(handles); |
| 3564 | | [RootPath_1,SubDir_1,RootFile_1,FileIndex_1,FileExt_1]=read_file_boxes_1(handles); |
| 3565 | | FileName=[fullfile(RootPath,SubDir,RootFile) FileIndex FileExt];% name of the first input file |
| 3566 | | |
| 3567 | | check_refresh=0; |
| 3568 | | if isempty(InputFile.VelType_1) |
| 3569 | | FileName_1='';% we plot the first input field without the second field |
| 3570 | | set(handles.SubField,'Value',0) |
| 3571 | | SubField_Callback(hObject, eventdata, handles)% activate SubField_Callback and refresh current plot, removing the second field |
| 3572 | | elseif get(handles.SubField,'Value')% if subfield is already 'on' |
| 3573 | | FileName_1=[fullfile(RootPath_1,SubDir_1,RootFile_1) FileIndex_1 FileExt_1];% name of the second input file |
| 3574 | | check_refresh=1;%will refresh the current plot |
| 3575 | | else% we introduce the same file (with a different field) for the second series |
| 3576 | | FileName_1=FileName;% we compare two fields in the same file |
| 3577 | | UvData.FileType{2}=UvData.FileType{1}; |
| 3578 | | UvData.XmlData{2}= UvData.XmlData{1}; |
| 3579 | | set(handles.SubField,'Value',1) |
| 3580 | | transform=get(handles.TransformPath,'UserData'); |
| 3581 | | if (~isa(transform,'function_handle')||nargin(transform)<3) |
| 3582 | | set(handles.uvmat,'UserData',UvData) |
| 3583 | | set(handles.TransformName,'value',2); % set transform fct to 'sub_field' if the current fct does not accept two input fields |
| 3584 | | TransformName_Callback(hObject, eventdata, handles)% activate transform_fct_Callback and refresh current plot |
| 3585 | | else |
| 3586 | | check_refresh=1; |
| 3587 | | end |
| 3588 | | end |
| 3589 | | |
| 3590 | | % inputfilerefresh the current plot if it has not been done previously |
| 3591 | | if check_refresh |
| 3592 | | UvData.FileName_1='';% desactivate the use of a constant second file |
| 3593 | | set(handles.uvmat,'UserData',UvData) |
| 3594 | | num_i1=stra2num(get(handles.i1,'String')); |
| 3595 | | num_i2=stra2num(get(handles.i2,'String')); |
| 3596 | | num_j1=stra2num(get(handles.j1,'String')); |
| 3597 | | num_j2=stra2num(get(handles.j2,'String')); |
| 3598 | | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(['xx' FileIndex_1]); |
| 3599 | | errormsg=refresh_field(handles,FileName,FileName_1,num_i1,num_i2,num_j1,num_j2,i1_1,i2_1,j1_1,j2_1); |
| 3600 | | if ~isempty(errormsg) |
| 3601 | | msgbox_uvmat('ERROR',errormsg); |
| 3602 | | else |
| 3603 | | % set(handles.i1,'BackgroundColor',[1 1 1]) |
| 3604 | | % set(handles.i2,'BackgroundColor',[1 1 1]) |
| 3605 | | % set(handles.j1,'BackgroundColor',[1 1 1]) |
| 3606 | | % set(handles.j2,'BackgroundColor',[1 1 1]) |
| 3607 | | % set(handles.FileIndex,'BackgroundColor',[1 1 1]) |
| 3608 | | % set(handles.FileIndex_1,'BackgroundColor',[1 1 1]) |
| 3609 | | end |
| 3610 | | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0]) |
| 3611 | | end |
| 3612 | | |
| 3613 | | |
| 3614 | | %------------------------------------------------------------------------ |
| 3615 | | % --- reset civ buttons |
| 3616 | | function reset_vel_type(handles_civ0,handle1) |
| 3617 | | %------------------------------------------------------------------------ |
| 3618 | | for ibutton=1:length(handles_civ0) |
| 3619 | | set(handles_civ0(ibutton),'BackgroundColor',[0.831 0.816 0.784]) |
| 3620 | | set(handles_civ0(ibutton),'Value',0) |
| 3621 | | end |
| 3622 | | if exist('handle1','var')%handles of selected button |
| 3623 | | set(handle1,'BackgroundColor',[1 1 0]) |
| 3624 | | end |
| 3625 | | |
| 3626 | | %----------------------------------------------------------------------- |
| 3627 | | % --- Executes on button press in MENUVOLUME. |
| 3628 | | function VOLUME_Callback(hObject, eventdata, handles) |
| 3629 | | %----------------------------------------------------------------------- |
| 3630 | | %errordlg('command VOL not implemented yet') |
| 3631 | | if ishandle(handles.UVMAT_title) |
| 3632 | | delete(handles.UVMAT_title) |
| 3633 | | end |
| 3634 | | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
| 3635 | | if isequal(get(handles.VOLUME,'Value'),1) |
| 3636 | | set(handles.CheckZoom,'Value',0) |
| 3637 | | % set(handles.CheckZoom,'BackgroundColor',[0.7 0.7 0.7]) |
| 3638 | | set(handles.edit_vect,'Value',0) |
| 3639 | | edit_vect_Callback(hObject, eventdata, handles) |
| 3640 | | set(handles.CheckEditObject,'Value',0) |
| 3641 | | % set(handles.CheckEditObject,'BackgroundColor',[0.7 0.7 0.7]) |
| 3642 | | % set(handles.cal,'Value',0) |
| 3643 | | % set(handles.cal,'BackgroundColor',[0 1 0]) |
| 3644 | | set(handles.edit_vect,'Value',0) |
| 3645 | | edit_vect_Callback(hObject, eventdata, handles) |
| 3646 | | %initiate set_object GUI |
| 3647 | | data.Name='VOLUME'; |
| 3648 | | if isfield(UvData,'CoordType') |
| 3649 | | data.CoordType=UvData.CoordType; |
| 3650 | | end |
| 3651 | | if isfield(UvData.Field,'CoordMesh')&~isempty(UvData.Field.CoordMesh) |
| 3652 | | data.RangeX=[UvData.Field.XMin UvData.Field.XMax]; |
| 3653 | | data.RangeY=[UvData.Field.YMin UvData.Field.YMax]; |
| 3654 | | data.DX=UvData.Field.CoordMesh; |
| 3655 | | data.DY=UvData.Field.CoordMesh; |
| 3656 | | elseif isfield(UvData.Field,'Coord_x')&isfield(UvData.Field,'Coord_y')& isfield(UvData.Field,'A')%only image |
| 3657 | | np=size(UvData.Field.A); |
| 3658 | | meshx=(UvData.Field.Coord_x(end)-UvData.Field.Coord_x(1))/np(2); |
| 3659 | | meshy=abs(UvData.Field.Coord_y(end)-UvData.Field.Coord_y(1))/np(1); |
| 3660 | | data.RangeY=max(meshx,meshy); |
| 3661 | | data.RangeX=max(meshx,meshy); |
| 3662 | | data.DX=max(meshx,meshy); |
| 3663 | | end |
| 3664 | | data.ParentButton=handles.VOLUME; |
| 3665 | | PlotHandles=get_plot_handles(handles);%get the handles of the interface elements setting the plotting parameters |
| 3666 | | [hset_object,UvData.sethandles]=set_object(data,PlotHandles);% call the set_object interface with action on haxes, |
| 3667 | | % associate the set_object interface handle to the plotting axes |
| 3668 | | set(hset_object,'name','set_object') |
| 3669 | | UvData.MouseAction='create_object'; |
| 3670 | | else |
| 3671 | | set(handles.VOLUME,'BackgroundColor',[0 1 0]) |
| 3672 | | end |
| 3673 | | set(handles.uvmat,'UserData',UvData) |
| 3674 | | |
| 3675 | | %------------------------------------------------------- |
| 3676 | | function edit_vect_Callback(hObject, eventdata, handles) |
| 3677 | | %------------------------------------------------------- |
| 3678 | | % |
| 3679 | | if isequal(get(handles.edit_vect,'Value'),1) |
| 3680 | | VelTypeMenu=get(handles.VelType,'String'); |
| 3681 | | VelType=VelTypeMenu{get(handles.VelType,'Value')}; |
| 3682 | | if ~strcmp(VelType,'civ2') && ~strcmp(VelType,'civ1') |
| 3683 | | msgbox_uvmat('ERROR','manual correction only possible for CIV1 or CIV2 velocity fields') |
| 3684 | | end |
| 3685 | | set(handles.record,'Visible','on') |
| 3686 | | set(handles.edit_vect,'BackgroundColor',[1 1 0]) |
| 3687 | | set(handles.CheckEditObject,'Value',0) |
| 3688 | | set(handles.CheckZoom,'Value',0) |
| 3689 | | set(gcf,'Pointer','arrow') |
| 3690 | | else |
| 3691 | | set(handles.record,'Visible','off') |
| 3692 | | set(handles.edit_vect,'BackgroundColor',[0.7 0.7 0.7]) |
| 3693 | | end |
| 3694 | | |
| 3695 | | %---------------------------------------------- |
| 3696 | | function save_mask_Callback(hObject, eventdata, handles) |
| 3697 | | %----------------------------------------------------------------------- |
| 3698 | | UvData=get(handles.uvmat,'UserData'); |
| 3699 | | |
| 3700 | | flag=1; |
| 3701 | | npx=size(UvData.Field.A,2); |
| 3702 | | npy=size(UvData.Field.A,1); |
| 3703 | | xi=0.5:npx-0.5; |
| 3704 | | yi=0.5:npy-0.5; |
| 3705 | | [Xi,Yi]=meshgrid(xi,yi); |
| 3706 | | if isfield(UvData,'ProjObject') |
| 3707 | | for iobj=1:length(UvData.ProjObject) |
| 3708 | | ObjectData=UvData.ProjObject{iobj}; |
| 3709 | | if isfield(ObjectData,'ProjMode') &&(isequal(ObjectData.ProjMode,'mask_inside')||isequal(ObjectData.ProjMode,'mask_outside')); |
| 3710 | | flagobj=1; |
| 3711 | | testphys=0; %coordinates in pixels by default |
| 3712 | | if isfield(ObjectData,'CoordType') && isequal(ObjectData.CoordType,'phys') |
| 3713 | | if isfield(UvData,'XmlData')&& isfield(UvData.XmlData{1},'GeometryCalib') |
| 3714 | | Calib=UvData.XmlData{1}.GeometryCalib; |
| 3715 | | testphys=1; |
| 3716 | | end |
| 3717 | | end |
| 3718 | | if isfield(ObjectData,'Coord')& isfield(ObjectData,'Style') |
| 3719 | | if isequal(ObjectData.Type,'polygon') |
| 3720 | | X=ObjectData.Coord(:,1); |
| 3721 | | Y=ObjectData.Coord(:,2); |
| 3722 | | if testphys |
| 3723 | | [X,Y]=px_XYZ(Calib,X,Y,0);% to generalise with 3D cases |
| 3724 | | end |
| 3725 | | flagobj=~inpolygon(Xi,Yi,X',Y');%=0 inside the polygon, 1 outside |
| 3726 | | elseif isequal(ObjectData.Type,'ellipse') |
| 3727 | | if testphys |
| 3728 | | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys |
| 3729 | | end |
| 3730 | | RangeX=max(ObjectData.RangeX); |
| 3731 | | RangeY=max(ObjectData.RangeY); |
| 3732 | | X2Max=RangeX*RangeX; |
| 3733 | | Y2Max=RangeY*RangeY; |
| 3734 | | distX=(Xi-ObjectData.Coord(1,1)); |
| 3735 | | distY=(Yi-ObjectData.Coord(1,2)); |
| 3736 | | flagobj=(distX.*distX/X2Max+distY.*distY/Y2Max)>1; |
| 3737 | | elseif isequal(ObjectData.Type,'rectangle') |
| 3738 | | if testphys |
| 3739 | | %[X,Y]=px_XYZ(Calib,X,Y,0);% TODO:create a polygon boundary and transform to phys |
| 3740 | | end |
| 3741 | | distX=abs(Xi-ObjectData.Coord(1,1)); |
| 3742 | | distY=abs(Yi-ObjectData.Coord(1,2)); |
| 3743 | | flagobj=distX>max(ObjectData.RangeX) | distY>max(ObjectData.RangeY); |
| 3744 | | end |
| 3745 | | if isequal(ObjectData.ProjMode,'mask_outside') |
| 3746 | | flagobj=~flagobj; |
| 3747 | | end |
| 3748 | | flag=flag & flagobj; |
| 3749 | | end |
| 3750 | | end |
| 3751 | | end |
| 3752 | | end |
| 3753 | | % flag=~flag; |
| 3754 | | %mask name |
| 3755 | | RootPath=get(handles.RootPath,'String'); |
| 3756 | | RootFile=get(handles.RootFile,'String'); |
| 3757 | | RootFile=regexprep(RootFile,'\<[\\/]|[\\/]\>','');%suppress possible / or \ separator at the beginning or the end of the string |
| 3758 | | filebase=fullfile(RootPath,RootFile); |
| 3759 | | list=get(handles.masklevel,'String'); |
| 3760 | | masknumber=num2str(length(list)); |
| 3761 | | maskindex=get(handles.masklevel,'Value'); |
| 3762 | | mask_name=fullfile_uvmat(RootPath,SubDir,[RootFile '_' masknumber 'mask'],'.png','_1',maskindex); |
| 3763 | | %mask_name=name_generator([filebase '_' masknumber 'mask'],maskindex,1,'.png','_i'); |
| 3764 | | imflag=uint8(255*(0.392+0.608*flag));% =100 for flag=0 (vectors not computed when 20<imflag<200) |
| 3765 | | imflag=flipdim(imflag,1); |
| 3766 | | % imflag=uint8(255*flag);% =0 for flag=0 (vectors=0 when 20<imflag<200) |
| 3767 | | msgbox_uvmat('CONFIRMATION',[mask_name ' saved']) |
| 3768 | | imwrite(imflag,mask_name,'BitDepth',8); |
| 3769 | | |
| 3770 | | %display the mask |
| 3771 | | figure; |
| 3772 | | vec=linspace(0,1,256);%define a linear greyscale colormap |
| 3773 | | map=[vec' vec' vec']; |
| 3774 | | colormap(map) |
| 3775 | | |
| 3776 | | image(imflag); |
| 3777 | | |
| 3778 | | %------------------------------------------------------------------------ |
| 3779 | | %------------------------------------------------------------------------ |
| 3780 | | % - FUNCTIONS FOR SETTING PLOTTING PARAMETERS |
| 3781 | | |
| 3782 | | %------------------------------------------------------------------------ |
| 3783 | | %------------------------------------------------------------------------ |
| 3784 | | % --- Executes on selection change in TransformName. |
| 3785 | | |
| 3786 | | function TransformName_Callback(hObject, eventdata, handles) |
| 3787 | | %------------------------------------------------------------------------ |
| 3788 | | set(handles.TransformName,'backgroundColor',[1 1 0])% indicate activation of the menu |
| 3789 | | drawnow |
| 3790 | | UvData=get(handles.uvmat,'UserData'); |
| 3791 | | menu=get(handles.TransformName,'String');%refresh |
| 3792 | | ichoice=get(handles.TransformName,'Value');%item number in the menu |
| 3793 | | transform_name=menu{ichoice};% choice of the transform fct |
| 3794 | | list_path=get(handles.TransformName,'UserData'); |
| 3795 | | |
| 3796 | | %% handles visibility of the path to the transform function |
| 3797 | | if isempty(transform_name) |
| 3798 | | set(handles.TransformPath,'Visible','off') |
| 3799 | | else |
| 3800 | | set(handles.TransformPath,'Visible','on') |
| 3801 | | end |
| 3802 | | |
| 3803 | | %% add a new item to the menu if the option 'more...' has been selected |
| 3804 | | prev_path=fullfile(get(handles.TransformPath,'String')); |
| 3805 | | if ~exist(prev_path,'dir') |
| 3806 | | prev_path=fullfile(fileparts(which('uvmat')),'transform_field'); |
| 3807 | | end |
| 3808 | | if strcmp(transform_name,'more...'); |
| 3809 | | transform_fct_chosen=uigetfile_uvmat('Pick the transform function',prev_path,'.m'); |
| 3810 | | if ~isempty(transform_fct_chosen) |
| 3811 | | [PathName,transform_name]=fileparts(transform_fct_chosen); |
| 3812 | | ichoice=find(strcmp(transform_name,menu),1);%look for the selected fct in the existing menu |
| 3813 | | if isempty(ichoice)% if the item is not found, add it to the menu (before 'more...' and select it) |
| 3814 | | menu=[menu(1:end-1);{transform_name};{'more...'}]; |
| 3815 | | ichoice=numel(menu)-1; |
| 3816 | | end |
| 3817 | | list_path{ichoice}=PathName;%update the list fo fct paths |
| 3818 | | set(handles.TransformName,'String',menu) |
| 3819 | | set(handles.TransformName,'Value',ichoice) |
| 3820 | | |
| 3821 | | % save the new menu in the personal file 'uvmat_perso.mat' |
| 3822 | | dir_perso=prefdir;%personal Matalb directory |
| 3823 | | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
| 3824 | | if exist(profil_perso,'file') |
| 3825 | | nb_builtin=UvData.OpenParam.NbBuiltin;% number of 'builtin' (basic) transform fcts in uvmat |
| 3826 | | if nb_builtin<numel(list_path) |
| 3827 | | for ilist=nb_builtin+1:numel(list_path) |
| 3828 | | transform_fct{ilist-nb_builtin}=[fullfile(list_path{ilist},menu{ilist}) '.m']; |
| 3829 | | end |
| 3830 | | save (profil_perso,'transform_fct','-append'); %store the root name for future opening of uvmat |
| 3831 | | end |
| 3832 | | end |
| 3833 | | end |
| 3834 | | end |
| 3835 | | |
| 3836 | | %% create the function handle of the selected fct |
| 3837 | | if isempty(list_path{ichoice})% case of no selected fct |
| 3838 | | transform_handle=[]; |
| 3839 | | else |
| 3840 | | if ~exist(list_path{ichoice},'dir') |
| 3841 | | msgbox_uvmat('ERROR','invalid fct path: select the transform fct again with the option more...') |
| 3842 | | return |
| 3843 | | end |
| 3844 | | current_dir=pwd;%current working dir |
| 3845 | | cd(list_path{ichoice}) |
| 3846 | | transform_handle=str2func(transform_name); |
| 3847 | | cd(current_dir) |
| 3848 | | end |
| 3849 | | set(handles.TransformPath,'String',list_path{ichoice}) |
| 3850 | | set(handles.TransformPath,'UserData',transform_handle) |
| 3851 | | set(handles.TransformName,'UserData',list_path) |
| 3852 | | |
| 3853 | | %% update the ToolTip string of the menu TransformName with the first line of the selected fct file |
| 3854 | | if isempty(list_path{ichoice})% case of no selected fct |
| 3855 | | set(handles.TransformName,'ToolTipString','transform_fct:choose a transform function') |
| 3856 | | else |
| 3857 | | try |
| 3858 | | [fid,errormsg] =fopen([fullfile(list_path{ichoice},transform_name) '.m']); |
| 3859 | | InputText=textscan(fid,'%s',1,'delimiter','\n'); |
| 3860 | | fclose(fid); |
| 3861 | | set(handles.TransformName,'ToolTipString',['transform_fct: ' InputText{1}{1}])% put the first line of the selected function as tooltip help |
| 3862 | | end |
| 3863 | | end |
| 3864 | | |
| 3865 | | %% adapt the GUI to the input/output conditions of the selected transform fct |
| 3866 | | CoordUnit=''; |
| 3867 | | CoordUnitPrev=''; |
| 3868 | | if isfield(UvData,'Field')&&isfield(UvData.Field,'CoordUnit') |
| 3869 | | CoordUnitPrev=UvData.Field.CoordUnit; |
| 3870 | | end |
| 3871 | | if ~isempty(list_path{ichoice}) |
| 3872 | | if nargin(transform_handle)>1 %&& isfield(UvData,'XmlData')&&~isempty(UvData.XmlData) |
| 3873 | | XmlData=[]; |
| 3874 | | if isfield(UvData,'XmlData')&&~isempty(UvData.XmlData) |
| 3875 | | XmlData=UvData.XmlData{1}; |
| 3876 | | end |
| 3877 | | UvData.Field.Action.RUN=0;% indicate that the transform fct is called only to get input param |
| 3878 | | DataOut=feval(transform_handle,UvData.Field,XmlData);% execute the transform fct to get the required conditions |
| 3879 | | if isfield(DataOut,'CoordUnit')% set the requested coord unit (info used to possibly delete the current projection objects) |
| 3880 | | CoordUnit=DataOut.CoordUnit; |
| 3881 | | end |
| 3882 | | if isfield(DataOut,'InputFieldType')% to be used to impose a type of input file (eg. for image transform) |
| 3883 | | UvData.InputFieldType=DataOut.InputFieldType; |
| 3884 | | end |
| 3885 | | if isfield(DataOut,'TransformInput')% used to add transform parameters at selection of the transform fct |
| 3886 | | UvData.XmlData{1}.TransformInput=DataOut.TransformInput; |
| 3887 | | end |
| 3888 | | end |
| 3889 | | end |
| 3890 | | |
| 3891 | | %% delete drawn objects if the output CooordUnit is different from the previous one |
| 3892 | | if ~isempty(CoordUnit) && ~isempty(CoordUnitPrev) && ~strcmp(CoordUnit,CoordUnitPrev) |
| 3893 | | set(handles.CheckFixLimits,'Value',0) |
| 3894 | | hother=findobj('Tag','proj_object');%find all the proj objects |
| 3895 | | for iobj=1:length(hother) |
| 3896 | | delete_object(hother(iobj)) |
| 3897 | | end |
| 3898 | | hother=findobj('Tag','DeformPoint');%find all the proj objects |
| 3899 | | for iobj=1:length(hother) |
| 3900 | | delete_object(hother(iobj)) |
| 3901 | | end |
| 3902 | | hh=findobj('Tag','calib_points'); |
| 3903 | | if ~isempty(hh) |
| 3904 | | delete(hh) |
| 3905 | | end |
| 3906 | | hhh=findobj('Tag','calib_marker'); |
| 3907 | | if ~isempty(hhh) |
| 3908 | | delete(hhh) |
| 3909 | | end |
| 3910 | | set(handles.ListObject,'Value',1) |
| 3911 | | set(handles.ListObject,'String',{''}) |
| 3912 | | set(handles.ListObject_1,'Value',1) |
| 3913 | | set(handles.ListObject_1,'String',{''}) |
| 3914 | | set(handles.CheckViewObject,'value',0) |
| 3915 | | CheckViewObject_Callback(hObject, eventdata, handles) |
| 3916 | | set(handles.CheckViewField,'value',0) |
| 3917 | | CheckViewField_Callback(hObject, eventdata, handles) |
| 3918 | | set(handles.CheckEditObject,'Value',0) |
| 3919 | | CheckEditObject_Callback(hObject, eventdata, handles) |
| 3920 | | UvData.ProjObject={[]}; |
| 3921 | | end |
| 3922 | | set(handles.uvmat,'UserData',UvData) |
| 3923 | | set(handles.TransformName,'backgroundColor',[1 1 1])% indicate desactivation of the menu |
| 3924 | | drawnow |
| 3925 | | |
| 3926 | | %% inputfilerefresh the current plot |
| 3927 | | if isempty(list_path{ichoice}) || nargin(transform_handle)<3 |
| 3928 | | set(handles.SubField,'Value',0) |
| 3929 | | SubField_Callback(hObject, eventdata, handles) |
| 3930 | | else |
| 3931 | | REFRESH_Callback(hObject, eventdata, handles) |
| 3932 | | end |
| 3933 | | |
| 3934 | | %------------------------------------------------ |
| 3935 | | %CALLBACKS FOR PLOTTING PARAMETERS |
| 3936 | | %------------------------------------------------- |
| 3937 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 3938 | | % Plot axes |
| 3939 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 3940 | | %------------------------------------------------------------------------ |
| 3941 | | function num_MinX_Callback(hObject, eventdata, handles) |
| 3942 | | %------------------------------------------------------------------------ |
| 3943 | | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
| 3944 | | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
| 3945 | | update_plot(handles); |
| 3946 | | |
| 3947 | | %------------------------------------------------------------------------ |
| 3948 | | function num_MaxX_Callback(hObject, eventdata, handles) |
| 3949 | | %------------------------------------------------------------------------ |
| 3950 | | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
| 3951 | | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
| 3952 | | update_plot(handles); |
| 3953 | | |
| 3954 | | %------------------------------------------------------------------------ |
| 3955 | | function num_MinY_Callback(hObject, eventdata, handles) |
| 3956 | | %------------------------------------------ |
| 3957 | | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
| 3958 | | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
| 3959 | | update_plot(handles); |
| 3960 | | |
| 3961 | | %------------------------------------------------------------------------ |
| 3962 | | function num_MaxY_Callback(hObject, eventdata, handles) |
| 3963 | | %------------------------------------------------------------------------ |
| 3964 | | set(handles.CheckFixLimits,'Value',1) %suppress auto mode |
| 3965 | | % set(handles.CheckFixLimits,'BackgroundColor',[1 1 0]) |
| 3966 | | update_plot(handles); |
| 3967 | | |
| 3968 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 3969 | | % Scalar or image representation |
| 3970 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 3971 | | %------------------------------------------------------------------------ |
| 3972 | | function num_MinA_Callback(hObject, eventdata, handles) |
| 3973 | | %------------------------------------------ |
| 3974 | | set(handles.CheckFixScalar,'Value',1) %suppress auto mode |
| 3975 | | % set(handles.CheckFixScalar,'BackgroundColor',[1 1 0]) |
| 3976 | | MinA=str2double(get(handles.num_MinA,'String')); |
| 3977 | | MaxA=str2double(get(handles.num_MaxA,'String')); |
| 3978 | | if MinA>MaxA% switch minA and maxA in case of error |
| 3979 | | MinA_old=MinA; |
| 3980 | | MinA=MaxA; |
| 3981 | | MaxA=MinA_old; |
| 3982 | | set(handles.num_MinA,'String',num2str(MinA,5)); |
| 3983 | | set(handles.num_MaxA,'String',num2str(MaxA,5)); |
| 3984 | | end |
| 3985 | | update_plot(handles); |
| 3986 | | |
| 3987 | | %------------------------------------------------------------------------ |
| 3988 | | function num_MaxA_Callback(hObject, eventdata, handles) |
| 3989 | | %------------------------------------------------------------------------ |
| 3990 | | set(handles.CheckFixScalar,'Value',1) %suppress auto mode |
| 3991 | | % set(handles.CheckFixScalar,'BackgroundColor',[1 1 0]) |
| 3992 | | MinA=str2double(get(handles.num_MinA,'String')); |
| 3993 | | MaxA=str2double(get(handles.num_MaxA,'String')); |
| 3994 | | if MinA>MaxA% switch minA and maxA in case of error |
| 3995 | | MinA_old=MinA; |
| 3996 | | MinA=MaxA; |
| 3997 | | MaxA=MinA_old; |
| 3998 | | set(handles.num_MinA,'String',num2str(MinA,5)); |
| 3999 | | set(handles.num_MaxA,'String',num2str(MaxA,5)); |
| 4000 | | end |
| 4001 | | update_plot(handles); |
| 4002 | | |
| 4003 | | %------------------------------------------------------------------------ |
| 4004 | | function CheckFixScalar_Callback(hObject, eventdata, handles) |
| 4005 | | %------------------------------------------------------------------------ |
| 4006 | | test=get(handles.CheckFixScalar,'Value'); |
| 4007 | | if test |
| 4008 | | % set(handles.CheckFixScalar,'BackgroundColor',[1 1 0]) |
| 4009 | | else |
| 4010 | | % set(handles.CheckFixScalar,'BackgroundColor',[0.7 0.7 0.7]) |
| 4011 | | update_plot(handles); |
| 4012 | | end |
| 4013 | | |
| 4014 | | %------------------------------------------------------------------- |
| 4015 | | function CheckBW_Callback(hObject, eventdata, handles) |
| 4016 | | %------------------------------------------------------------------- |
| 4017 | | update_plot(handles); |
| 4018 | | |
| 4019 | | %------------------------------------------------------------------- |
| 4020 | | function num_Opacity_Callback(hObject, eventdata, handles) |
| 4021 | | update_plot(handles); |
| 4022 | | %------------------------------------------------------------------- |
| 4023 | | |
| 4024 | | %------------------------------------------------------------------- |
| 4025 | | function ListContour_Callback(hObject, eventdata, handles) |
| 4026 | | %------------------------------------------------------------------- |
| 4027 | | val=get(handles.ListContour,'Value'); |
| 4028 | | if val==2% option 'contours' |
| 4029 | | set(handles.interval_txt,'Visible','on') |
| 4030 | | set(handles.num_IncrA,'Visible','on') |
| 4031 | | set(handles.num_IncrA,'String','')% refresh contour interval |
| 4032 | | % set(handles.opacity_txt,'Visible','off') |
| 4033 | | % set(handles.num_Opacity,'Visible','off') |
| 4034 | | else % option 'image' |
| 4035 | | set(handles.interval_txt,'Visible','off') |
| 4036 | | set(handles.num_IncrA,'Visible','off') |
| 4037 | | % set(handles.opacity_txt,'Visible','on') |
| 4038 | | % set(handles.num_Opacity,'Visible','on') |
| 4039 | | end |
| 4040 | | update_plot(handles); |
| 4041 | | |
| 4042 | | %------------------------------------------------------------------- |
| 4043 | | function num_IncrA_Callback(hObject, eventdata, handles) |
| 4044 | | %------------------------------------------------------------------- |
| 4045 | | update_plot(handles); |
| 4046 | | |
| 4047 | | |
| 4048 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 4049 | | % Vector representation |
| 4050 | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 4051 | | %------------------------------------------------------------------- |
| 4052 | | function CheckHideWarning_Callback(hObject, eventdata, handles) |
| 4053 | | %------------------------------------------------------------------- |
| 4054 | | update_plot(handles); |
| 4055 | | |
| 4056 | | %------------------------------------------------------------------- |
| 4057 | | function CheckHideFalse_Callback(hObject, eventdata, handles) |
| 4058 | | %------------------------------------------------------------------- |
| 4059 | | update_plot(handles); |
| 4060 | | |
| 4061 | | %------------------------------------------------------------------- |
| 4062 | | function num_VecScale_Callback(hObject, eventdata, handles) |
| 4063 | | %------------------------------------------------------------------- |
| 4064 | | set(handles.CheckFixVectors,'Value',1); |
| 4065 | | %set(handles.CheckFixVectors,'BackgroundColor',[1 1 0]) |
| 4066 | | update_plot(handles); |
| 4067 | | |
| 4068 | | %------------------------------------------------------------------- |
| 4069 | | function CheckFixVectors_Callback(hObject, eventdata, handles) |
| 4070 | | %------------------------------------------------------------------- |
| 4071 | | if ~get(handles.CheckFixVectors,'Value') |
| 4072 | | update_plot(handles); |
| 4073 | | end |
| 4074 | | |
| 4075 | | %------------------------------------------------------------------------ |
| 4076 | | % --- Executes on selection change in CheckDecimate4 (nb_vec/4). |
| 4077 | | %------------------------------------------------------------------------ |
| 4078 | | function CheckDecimate4_Callback(hObject, eventdata, handles) |
| 4079 | | |
| 4080 | | if isequal(get(handles.CheckDecimate4,'Value'),1) |
| 4081 | | set(handles.CheckDecimate16,'Value',0) |
| 4082 | | end |
| 4083 | | update_plot(handles); |
| 4084 | | |
| 4085 | | %------------------------------------------------------------------------ |
| 4086 | | % --- Executes on selection change in CheckDecimate16 (nb_vec/16). |
| 4087 | | %------------------------------------------------------------------------ |
| 4088 | | function CheckDecimate16_Callback(hObject, eventdata, handles) |
| 4089 | | |
| 4090 | | if isequal(get(handles.CheckDecimate16,'Value'),1) |
| 4091 | | set(handles.CheckDecimate4,'Value',0) |
| 4092 | | end |
| 4093 | | update_plot(handles); |
| 4094 | | |
| 4095 | | %------------------------------------------------------------------------ |
| 4096 | | % --- Executes on selection change in ColorCode menu |
| 4097 | | function ColorCode_Callback(hObject, eventdata, handles) |
| 4098 | | %------------------------------------------------------------------------ |
| 4099 | | % edit the choice for color code |
| 4100 | | update_color_code_boxes(handles); |
| 4101 | | update_plot(handles); |
| 4102 | | |
| 4103 | | %------------------------------------------------------------------------ |
| 4104 | | function update_color_code_boxes(handles) |
| 4105 | | %------------------------------------------------------------------------ |
| 4106 | | list_code=get(handles.ColorCode,'String');% list menu fields |
| 4107 | | colcode= list_code{get(handles.ColorCode,'Value')}; % selected field |
| 4108 | | enable_slider='off';%default |
| 4109 | | enable_bounds='off';%default |
| 4110 | | enable_scalar='off';%default |
| 4111 | | switch colcode |
| 4112 | | case {'rgb','bgr'} |
| 4113 | | enable_slider='on'; |
| 4114 | | enable_bounds='on'; |
| 4115 | | enable_scalar='on'; |
| 4116 | | case '64 colors' |
| 4117 | | enable_bounds='on'; |
| 4118 | | enable_scalar='on'; |
| 4119 | | end |
| 4120 | | set(handles.Slider1,'Visible',enable_slider) |
| 4121 | | set(handles.Slider2,'Visible', enable_slider) |
| 4122 | | set(handles.num_ColCode1,'Visible',enable_slider) |
| 4123 | | set(handles.num_ColCode2,'Visible',enable_slider) |
| 4124 | | set(handles.TitleColCode1,'Visible',enable_slider) |
| 4125 | | set(handles.TitleColCode2,'Visible',enable_slider) |
| 4126 | | set(handles.CheckFixVecColor,'Visible',enable_bounds) |
| 4127 | | set(handles.num_MinVec,'Visible',enable_bounds) |
| 4128 | | set(handles.num_MaxVec,'Visible',enable_bounds) |
| 4129 | | set(handles.ColorScalar,'Visible',enable_scalar) |
| 4130 | | set_vec_col_bar(handles) |
| 4131 | | |
| 4132 | | %------------------------------------------------------------------ |
| 4133 | | % --- Executes on selection change in ColorScalar: choice of the color code. |
| 4134 | | function ColorScalar_Callback(hObject, eventdata, handles) |
| 4135 | | %------------------------------------------------------------------ |
| 4136 | | % edit the choice for color code |
| 4137 | | list_scalar=get(handles.ColorScalar,'String');% list menu fields |
| 4138 | | col_scalar= list_scalar{get(handles.ColorScalar,'Value')}; % selected field |
| 4139 | | if isequal(col_scalar,'ima_cor') |
| 4140 | | set(handles.CheckFixVecColor,'Value',1)%fixed scale by default |
| 4141 | | ColorCode='rgb'; |
| 4142 | | set(handles.num_MinVec,'String','0') |
| 4143 | | set(handles.num_MaxVec,'String','1') |
| 4144 | | set(handles.num_ColCode1,'String','0.333') |
| 4145 | | set(handles.num_ColCode2,'String','0.666') |
| 4146 | | else |
| 4147 | | set(handles.CheckFixVecColor,'Value',0)%auto scale between min,max by default |
| 4148 | | ColorCode='64 colors'; |
| 4149 | | end |
| 4150 | | ColorCodeList=get(handles.ColorCode,'String'); |
| 4151 | | ichoice=find(strcmp(ColorCode,ColorCodeList),1); |
| 4152 | | set(handles.ColorCode,'Value',ichoice)% set color code in the menu |
| 4153 | | |
| 4154 | | update_color_code_boxes(handles); |
| 4155 | | %replot the current graph |
| 4156 | | REFRESH_Callback(hObject, eventdata, handles) |
| 4157 | | |
| 4158 | | %---------------------------------------------------------------- |
| 4159 | | % -- Executes on slider movement to set the color code |
| 4160 | | % |
| 4161 | | function Slider1_Callback(hObject, eventdata, handles) |
| 4162 | | %------------------------------------------------------------------ |
| 4163 | | slider1=get(handles.Slider1,'Value'); |
| 4164 | | min_val=str2num(get(handles.num_MinVec,'String')); |
| 4165 | | max_val=str2num(get(handles.num_MaxVec,'String')); |
| 4166 | | col=min_val+(max_val-min_val)*slider1; |
| 4167 | | set(handles.num_ColCode1,'String',num2str(col)) |
| 4168 | | if(get(handles.Slider2,'Value') < col)%move also the second slider at the same value if needed |
| 4169 | | set(handles.Slider2,'Value',col) |
| 4170 | | set(handles.num_ColCode2,'String',num2str(col)) |
| 4171 | | end |
| 4172 | | set_vec_col_bar(handles) |
| 4173 | | update_plot(handles); |
| 4174 | | |
| 4175 | | %---------------------------------------------------------------- |
| 4176 | | % Executes on slider movement to set the color code |
| 4177 | | %---------------------------------------------------------------- |
| 4178 | | function Slider2_Callback(hObject, eventdata, handles) |
| 4179 | | slider2=get(handles.Slider2,'Value'); |
| 4180 | | min_val=str2num(get(handles.num_MinVec,'String')); |
| 4181 | | max_val=str2num(get(handles.num_MaxVec,'String')); |
| 4182 | | col=min_val+(max_val-min_val)*slider2; |
| 4183 | | set(handles.num_ColCode2,'String',num2str(col)) |
| 4184 | | if(get(handles.Slider1,'Value') > col)%move also the first slider at the same value if needed |
| 4185 | | set(handles.Slider1,'Value',col) |
| 4186 | | set(handles.num_ColCode1,'String',num2str(col)) |
| 4187 | | end |
| 4188 | | set_vec_col_bar(handles) |
| 4189 | | update_plot(handles); |
| 4190 | | |
| 4191 | | %---------------------------------------------------------------- |
| 4192 | | % --- Execute on return carriage on the edit box corresponding to slider 1 |
| 4193 | | %---------------------------------------------------------------- |
| 4194 | | function num_ColCode1_Callback(hObject, eventdata, handles) |
| 4195 | | set_vec_col_bar(handles) |
| 4196 | | update_plot(handles); |
| 4197 | | |
| 4198 | | %---------------------------------------------------------------- |
| 4199 | | % --- Execute on return carriage on the edit box corresponding to slider 2 |
| 4200 | | %---------------------------------------------------------------- |
| 4201 | | function num_ColCode2_Callback(hObject, eventdata, handles) |
| 4202 | | set_vec_col_bar(handles) |
| 4203 | | update_plot(handles); |
| 4204 | | %------------------------------------------------------------------------ |
| 4205 | | %------------------------------------------------------- |
| 4206 | | % --- Executes on button press in CheckFixVecColor. |
| 4207 | | %------------------------------------------------------- |
| 4208 | | function VecColBar_Callback(hObject, eventdata, handles) |
| 4209 | | set_vec_col_bar(handles) |
| 4210 | | |
| 4211 | | %------------------------------------------------------------------------ |
| 4212 | | % --- Executes on button press in CheckFixVecColor. |
| 4213 | | function CheckFixVecColor_Callback(hObject, eventdata, handles) |
| 4214 | | %------------------------------------------------------------------------ |
| 4215 | | if ~get(handles.CheckFixVecColor,'Value') |
| 4216 | | update_plot(handles); |
| 4217 | | end |
| 4218 | | |
| 4219 | | %------------------------------------------------------------------------ |
| 4220 | | % --- Executes on selection change in num_MaxVec. |
| 4221 | | function num_MinVec_Callback(hObject, eventdata, handles) |
| 4222 | | %------------------------------------------------------------------------ |
| 4223 | | num_MaxVec_Callback(hObject, eventdata, handles) |
| 4224 | | |
| 4225 | | %------------------------------------------------------------------------ |
| 4226 | | % --- Executes on selection change in num_MaxVec. |
| 4227 | | function num_MaxVec_Callback(hObject, eventdata, handles) |
| 4228 | | %------------------------------------------------------------------------ |
| 4229 | | set(handles.CheckFixVecColor,'Value',1) |
| 4230 | | CheckFixVecColor_Callback(hObject, eventdata, handles) |
| 4231 | | min_val=str2num(get(handles.num_MinVec,'String')); |
| 4232 | | max_val=str2num(get(handles.num_MaxVec,'String')); |
| 4233 | | slider1=get(handles.Slider1,'Value'); |
| 4234 | | slider2=get(handles.Slider2,'Value'); |
| 4235 | | colcode1=min_val+(max_val-min_val)*slider1; |
| 4236 | | colcode2=min_val+(max_val-min_val)*slider2; |
| 4237 | | set(handles.num_ColCode1,'String',num2str(colcode1)) |
| 4238 | | set(handles.num_ColCode2,'String',num2str(colcode2)) |
| 4239 | | update_plot(handles); |
| 4240 | | |
| 4241 | | %------------------------------------------------------------------------ |
| 4242 | | % --- update the display of color code for vectors (on vecColBar) |
| 4243 | | function set_vec_col_bar(handles) |
| 4244 | | %------------------------------------------------------------------------ |
| 4245 | | %get the image of the color display button 'VecColBar' in pixels |
| 4246 | | set(handles.VecColBar,'Units','pixel'); |
| 4247 | | pos_vert=get(handles.VecColBar,'Position'); |
| 4248 | | set(handles.VecColBar,'Units','Normalized'); |
| 4249 | | width=ceil(pos_vert(3)); |
| 4250 | | height=ceil(pos_vert(4)); |
| 4251 | | |
| 4252 | | %get slider indications |
| 4253 | | list=get(handles.ColorCode,'String'); |
| 4254 | | ichoice=get(handles.ColorCode,'Value'); |
| 4255 | | colcode.ColorCode=list{ichoice}; |
| 4256 | | colcode.MinVec=str2num(get(handles.num_MinVec,'String')); |
| 4257 | | colcode.MaxVec=str2num(get(handles.num_MaxVec,'String')); |
| 4258 | | test3color=strcmp(colcode.ColorCode,'rgb') || strcmp(colcode.ColorCode,'bgr'); |
| 4259 | | if test3color |
| 4260 | | colcode.ColCode1=str2num(get(handles.num_ColCode1,'String')); |
| 4261 | | colcode.ColCode2=str2num(get(handles.num_ColCode2,'String')); |
| 4262 | | end |
| 4263 | | vec_C=colcode.MinVec+(colcode.MaxVec-colcode.MinVec)*(0.5:width-0.5)/width;%sample of vec_C values from min to max |
| 4264 | | [colorlist,col_vec]=set_col_vec(colcode,vec_C); |
| 4265 | | oneheight=ones(1,height); |
| 4266 | | A1=colorlist(col_vec,1)*oneheight; |
| 4267 | | A2=colorlist(col_vec,2)*oneheight; |
| 4268 | | A3=colorlist(col_vec,3)*oneheight; |
| 4269 | | A(:,:,1)=A1'; |
| 4270 | | A(:,:,2)=A2'; |
| 4271 | | A(:,:,3)=A3'; |
| 4272 | | set(handles.VecColBar,'Cdata',A) |
| 4273 | | |
| 4274 | | %------------------------------------------------------------------- |
| 4275 | | function update_plot(handles) |
| 4276 | | %------------------------------------------------------------------- |
| 4277 | | set(handles.REFRESH,'BackgroundColor',[1 1 0]);% display plot activity by yellow color |
| 4278 | | drawnow |
| 4279 | | UvData=get(handles.uvmat,'UserData'); |
| 4280 | | AxeData=UvData.PlotAxes;% retrieve the current plotted data |
| 4281 | | PlotParam=read_GUI(handles.uvmat); |
| 4282 | | [tild,PlotParamOut]= plot_field(AxeData,handles.PlotAxes,PlotParam); |
| 4283 | | errormsg=fill_GUI(PlotParamOut,handles.uvmat); |
| 4284 | | if isempty(errormsg) |
| 4285 | | set(handles.REFRESH,'BackgroundColor',[1 0 0]);% operation finished, back to red color |
| 4286 | | else |
| 4287 | | msgbox_uvmat('ERROR',errormsg) |
| 4288 | | set(handles.REFRESH,'BackgroundColor',[1 0 1]);% magenta color: graph still needs to be updated |
| 4289 | | end |
| 4290 | | |
| 4291 | | |
| 4292 | | %------------------------------------------------------------------------ |
| 4293 | | %------------------------------------------------------------------------ |
| 4294 | | % SELECTION AND EDITION OF PROJECTION OBJECTS |
| 4295 | | %------------------------------------------------------------------------ |
| 4296 | | %------------------------------------------------------------------------ |
| 4297 | | |
| 4298 | | % --- Executes on selection change in ListObject_1. |
| 4299 | | function ListObject_1_Callback(hObject, eventdata, handles) |
| 4300 | | list_str=get(handles.ListObject,'String'); |
| 4301 | | UvData=get(handles.uvmat,'UserData'); |
| 4302 | | ObjectData=UvData.ProjObject{get(handles.ListObject_1,'Value')}; |
| 4303 | | |
| 4304 | | %% update the projection plot on uvmat |
| 4305 | | ProjData= proj_field(UvData.Field,ObjectData);%project the current input field on object ObjectData |
| 4306 | | plot_field(ProjData,handles.PlotAxes,read_GUI(handles.uvmat));% plot the projected field; |
| 4307 | | %replot all the objects within the new projected field |
| 4308 | | for IndexObj=1:numel(list_str) |
| 4309 | | hobject=UvData.ProjObject{IndexObj}.DisplayHandle.uvmat; |
| 4310 | | if isempty(hobject) || ~ishandle(hobject) |
| 4311 | | hobject=handles.PlotAxes; |
| 4312 | | end |
| 4313 | | if isequal(IndexObj,get(handles.ListObject,'Value')) |
| 4314 | | objectcolor='m'; %paint in magenta the currently selected object in ListObject |
| 4315 | | else |
| 4316 | | objectcolor='b'; |
| 4317 | | end |
| 4318 | | UvData.ProjObject{IndexObj}.DisplayHandle.uvmat=plot_object(UvData.ProjObject{IndexObj},ObjectData,hobject,objectcolor);%draw the object in uvmat |
| 4319 | | end |
| 4320 | | set(handles.uvmat,'UserData',UvData) |
| 4321 | | |
| 4322 | | %% display the object parameters if the GUI set_object is already opened |
| 4323 | | if ~get(handles.CheckViewObject,'Value') |
| 4324 | | ZBounds=0; % default |
| 4325 | | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
| 4326 | | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
| 4327 | | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
| 4328 | | end |
| 4329 | | ObjectData.Name=list_str{get(handles.ListObject_1,'Value')}; |
| 4330 | | hset_object=set_object(ObjectData,[],ZBounds); |
| 4331 | | set(hset_object,'name','set_object') |
| 4332 | | set(handles.CheckViewObject,'Value',1)% show that the selected object in ListObject_1 is currently visualised |
| 4333 | | end |
| 4334 | | |
| 4335 | | % desactivate the edit object mode |
| 4336 | | set(handles.CheckEditObject,'Value',0) |
| 4337 | | % set(handles.CheckEditObject,'BackgroundColor',[0.7,0.7,0.7]) |
| 4338 | | |
| 4339 | | %------------------------------------------------------------------------ |
| 4340 | | % --- Executes on selection change in ListObject. |
| 4341 | | function ListObject_Callback(hObject, eventdata, handles) |
| 4342 | | %------------------------------------------------------------------------ |
| 4343 | | list_str=get(handles.ListObject,'String'); |
| 4344 | | IndexObj=get(handles.ListObject,'Value');%present object selection |
| 4345 | | UvData=get(handles.uvmat,'UserData'); |
| 4346 | | if numel(UvData.ProjObject)<IndexObj |
| 4347 | | return |
| 4348 | | end |
| 4349 | | ObjectData=UvData.ProjObject{IndexObj}; |
| 4350 | | ZBounds=0; % default |
| 4351 | | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
| 4352 | | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
| 4353 | | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
| 4354 | | end |
| 4355 | | |
| 4356 | | %% show object features if view_object isselected |
| 4357 | | if get(handles.CheckViewObject,'value') |
| 4358 | | hset_object=set_object(ObjectData,[],ZBounds); |
| 4359 | | set(hset_object,'name','set_object') |
| 4360 | | end |
| 4361 | | |
| 4362 | | %% desactivate the edit object mode for security |
| 4363 | | set(handles.CheckEditObject,'Value',0) |
| 4364 | | |
| 4365 | | %% update the plot on view_field if view_field is already openened |
| 4366 | | hview_field=findobj(allchild(0),'tag','view_field'); |
| 4367 | | if isempty(hview_field) |
| 4368 | | hhview_field.PlotAxes=[]; |
| 4369 | | else |
| 4370 | | Data=get(hview_field,'UserData'); |
| 4371 | | hhview_field=guidata(hview_field); |
| 4372 | | ProjData= proj_field(UvData.Field,ObjectData);%project the current interface field on ObjectData |
| 4373 | | [PlotType,PlotParam]=plot_field(ProjData,hhview_field.PlotAxes,read_GUI(hview_field));%read plotting parameters on the uvmat interface |
| 4374 | | haxes=findobj(hview_field,'tag','axes3'); |
| 4375 | | pos=get(hview_field,'Position'); |
| 4376 | | if strcmp(get(haxes,'Visible'),'off')%sempty(PlotParam.Axes)% case of no plot display (pure text table) |
| 4377 | | h_TableDisplay=findobj(hview_field,'tag','TableDisplay'); |
| 4378 | | pos_table=get(h_TableDisplay,'Position'); |
| 4379 | | set(hview_field,'Position',[pos(1)+pos(3)-pos_table(3) pos(2)+pos(4)-pos_table(4) pos_table(3) pos_table(4)]) |
| 4380 | | drawnow% needed to change position before the next command |
| 4381 | | set(hview_field,'UserData',Data);% restore the previously stored GUI position after GUI resizing |
| 4382 | | else |
| 4383 | | % set(hview_field,'Position',Data.GUISize)% return to the previously stored GUI position and size |
| 4384 | | end |
| 4385 | | end |
| 4386 | | |
| 4387 | | %% update the color of the graphic object representation: the selected object in magenta, others in blue |
| 4388 | | update_object_color(handles.PlotAxes,hhview_field.PlotAxes,UvData.ProjObject{IndexObj}.DisplayHandle.uvmat) |
| 4389 | | |
| 4390 | | %------------------------------------------------------------------------ |
| 4391 | | %--- update the color representation of objects (indicating the selected ones) |
| 4392 | | function update_object_color(axes_uvmat,axes_view_field,DisplayHandle) |
| 4393 | | %------------------------------------------------------------------------ |
| 4394 | | if isempty(axes_view_field)% case with no view_field plot |
| 4395 | | hother=[findobj(axes_uvmat,'Tag','proj_object');findobj(axes_uvmat,'Tag','DeformPoint')];%find all the proj object and deform point representations |
| 4396 | | else |
| 4397 | | hother=[findobj(axes_uvmat,'Tag','proj_object') ;findobj(axes_view_field,'Tag','proj_object');... %find all the proj object representations |
| 4398 | | findobj(axes_uvmat,'Tag','DeformPoint'); findobj(axes_view_field,'Tag','DeformPoint')];%find all the deform point representations |
| 4399 | | end |
| 4400 | | for iobj=1:length(hother) |
| 4401 | | if isequal(get(hother(iobj),'Type'),'rectangle')||isequal(get(hother(iobj),'Type'),'patch') |
| 4402 | | set(hother(iobj),'EdgeColor','b') |
| 4403 | | if isequal(get(hother(iobj),'FaceColor'),'m') |
| 4404 | | set(hother(iobj),'FaceColor','b') |
| 4405 | | end |
| 4406 | | elseif isequal(get(hother(iobj),'Type'),'image') |
| 4407 | | Acolor=get(hother(iobj),'CData'); |
| 4408 | | Acolor(:,:,1)=zeros(size(Acolor,1),size(Acolor,2)); |
| 4409 | | set(hother(iobj),'CData',Acolor); |
| 4410 | | else |
| 4411 | | set(hother(iobj),'Color','b') |
| 4412 | | end |
| 4413 | | set(hother(iobj),'Selected','off') |
| 4414 | | end |
| 4415 | | if ishandle(DisplayHandle) |
| 4416 | | linetype=get(DisplayHandle,'Type'); |
| 4417 | | if isequal(linetype,'line') |
| 4418 | | set(DisplayHandle,'Color','m'); %set the selected object to magenta color |
| 4419 | | elseif isequal(linetype,'rectangle') |
| 4420 | | set(DisplayHandle,'EdgeColor','m'); %set the selected object to magenta color |
| 4421 | | elseif isequal(linetype,'patch') |
| 4422 | | set(DisplayHandle,'FaceColor','m'); %set the selected object to magenta color |
| 4423 | | end |
| 4424 | | SubObjectData=get(DisplayHandle,'UserData'); |
| 4425 | | if isfield(SubObjectData,'SubObject') & ishandle(SubObjectData.SubObject) |
| 4426 | | for iobj=1:length(SubObjectData.SubObject) |
| 4427 | | hsub=SubObjectData.SubObject(iobj); |
| 4428 | | if isequal(get(hsub,'Type'),'rectangle') |
| 4429 | | set(hsub,'EdgeColor','m'); %set the selected object to magenta color |
| 4430 | | elseif isequal(get(hsub,'Type'),'image') |
| 4431 | | Acolor=get(hsub,'CData'); |
| 4432 | | Acolor(:,:,1)=Acolor(:,:,3); |
| 4433 | | set(hsub,'CData',Acolor); |
| 4434 | | else |
| 4435 | | set(hsub,'Color','m') |
| 4436 | | end |
| 4437 | | end |
| 4438 | | end |
| 4439 | | if isfield(SubObjectData,'DeformPoint') & ishandle(SubObjectData.DeformPoint) |
| 4440 | | set(SubObjectData.DeformPoint,'Color','m') |
| 4441 | | end |
| 4442 | | end |
| 4443 | | |
| 4444 | | %------------------------------------------------------------------- |
| 4445 | | % --- Executes on selection change in CheckEditObject. |
| 4446 | | function CheckEditObject_Callback(hObject, eventdata, handles) |
| 4447 | | %------------------------------------------------------------------- |
| 4448 | | hset_object=findobj(allchild(0),'Tag','set_object'); |
| 4449 | | if get(handles.CheckEditObject,'Value') |
| 4450 | | %suppress the other options |
| 4451 | | set(handles.MenuObject,'checked','off') |
| 4452 | | set(handles.CheckZoom,'Value',0) |
| 4453 | | CheckZoom_Callback(hObject, eventdata, handles) |
| 4454 | | hgeometry_calib=findobj(allchild(0),'tag','geometry_calib'); |
| 4455 | | if ishandle(hgeometry_calib) |
| 4456 | | hhgeometry_calib=guidata(hgeometry_calib); |
| 4457 | | set(hhgeometry_calib.CheckEnableMouse,'Value',0)% desactivate mouse action in geometry_calib |
| 4458 | | set(hhgeometry_calib.CheckEnableMouse,'BackgroundColor',[0.7 0.7 0.7]) |
| 4459 | | end |
| 4460 | | set(handles.CheckViewObject,'value',1) |
| 4461 | | CheckViewObject_Callback(hObject, eventdata, handles) |
| 4462 | | else % desactivate object edit mode |
| 4463 | | if ~isempty(hset_object)% open the |
| 4464 | | set(get(hset_object,'children'),'Enable','off') |
| 4465 | | hSAVE=findobj(hset_object,'Tag','SAVE'); |
| 4466 | | set(hSAVE,'Enable','on') |
| 4467 | | end |
| 4468 | | end |
| 4469 | | |
| 4470 | | |
| 4471 | | %------------------------------------------------------------------------ |
| 4472 | | % --- Executes on button press in CheckViewObject. |
| 4473 | | function CheckViewObject_Callback(hObject, eventdata, handles) |
| 4474 | | %------------------------------------------------------------------------ |
| 4475 | | check_view=get(handles.CheckViewObject,'Value'); |
| 4476 | | |
| 4477 | | if check_view %activate set_object |
| 4478 | | IndexObj=get(handles.ListObject,'Value'); |
| 4479 | | list_object=get(handles.ListObject,'String'); |
| 4480 | | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
| 4481 | | UvData.ProjObject{IndexObj}.Name=list_object{IndexObj}; |
| 4482 | | if numel(UvData.ProjObject)<IndexObj;% error in UvData |
| 4483 | | msgbox_uvmat('ERROR','invalid object list') |
| 4484 | | return |
| 4485 | | end |
| 4486 | | ZBounds=0; % default |
| 4487 | | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
| 4488 | | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
| 4489 | | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
| 4490 | | end |
| 4491 | | data=UvData.ProjObject{IndexObj}; |
| 4492 | | if ~isfield(data,'Type')% default plane |
| 4493 | | data.Type='plane'; |
| 4494 | | end |
| 4495 | | hset_object=set_object(data,[],ZBounds); |
| 4496 | | set(hset_object,'name','set_object') |
| 4497 | | hhset_object=guidata(hset_object); |
| 4498 | | if get(handles.CheckEditObject,'Value')% edit mode |
| 4499 | | set(get(hset_object,'children'),'Enable','on') |
| 4500 | | else |
| 4501 | | set(get(hset_object,'children'),'Enable','off')% deactivate the GUI except SAVE |
| 4502 | | set(hhset_object.SAVE,'Enable','on') |
| 4503 | | end |
| 4504 | | else |
| 4505 | | hset_object=findobj(allchild(0),'tag','set_object'); |
| 4506 | | if ~isempty(hset_object) |
| 4507 | | delete(hset_object)% delete existing version of set_object |
| 4508 | | end |
| 4509 | | end |
| 4510 | | |
| 4511 | | |
| 4512 | | %------------------------------------------------------------------------ |
| 4513 | | % --- Executes on button press in CheckViewField. |
| 4514 | | function CheckViewField_Callback(hObject, eventdata, handles) |
| 4515 | | %------------------------------------------------------------------------ |
| 4516 | | check_view=get(handles.CheckViewField,'Value'); |
| 4517 | | |
| 4518 | | if check_view |
| 4519 | | IndexObj=get(handles.ListObject,'Value'); |
| 4520 | | UvData=get(handles.uvmat,'UserData');%read UvData properties stored on the uvmat interface |
| 4521 | | if numel(UvData.ProjObject)<IndexObj(end);% error in UvData |
| 4522 | | msgbox_uvmat('ERROR','invalid object list') |
| 4523 | | return |
| 4524 | | end |
| 4525 | | ZBounds=0; % default |
| 4526 | | if isfield(UvData.Field,'ZMin') && isfield(UvData.Field,'ZMax') |
| 4527 | | ZBounds(1)=UvData.Field.ZMin; %minimum for the Z slider |
| 4528 | | ZBounds(2)=UvData.Field.ZMax;%maximum for the Z slider |
| 4529 | | end |
| 4530 | | set(handles.ListObject,'Value',IndexObj);%restore ListObject selection after set_object deletion |
| 4531 | | if ~isfield(UvData.ProjObject{IndexObj(1)},'Type')% default plane |
| 4532 | | UvData.ProjObject{IndexObj(1)}.Type='plane'; |
| 4533 | | end |
| 4534 | | list_object=get(handles.ListObject,'String'); |
| 4535 | | UvData.ProjObject{IndexObj(end)}.Name=list_object{IndexObj(end)}; |
| 4536 | | |
| 4537 | | %% show the projection of the selected object on view_field |
| 4538 | | ProjData= proj_field(UvData.Field,UvData.ProjObject{IndexObj});%project the current field on ObjectData |
| 4539 | | hview_field=findobj(allchild(0),'tag','view_field'); |
| 4540 | | if isempty(hview_field) |
| 4541 | | hview_field=view_field; |
| 4542 | | end |
| 4543 | | hhview_field=guidata(hview_field); |
| 4544 | | [PlotType,PlotParam]=plot_field(ProjData,hhview_field.PlotAxes,read_GUI(hview_field));%read plotting parameters on the GUI view_field); |
| 4545 | | errormsg=fill_GUI(PlotParam,hview_field); |
| 4546 | | for list={'Scalar','Vectors'} |
| 4547 | | if ~isfield(PlotParam,list{1}) |
| 4548 | | set(hhview_field.(list{1}),'Visible','off') |
| 4549 | | end |
| 4550 | | end |
| 4551 | | haxes=findobj(hview_field,'tag','axes3'); |
| 4552 | | pos=get(hview_field,'Position'); |
| 4553 | | if strcmp(get(haxes,'Visible'),'off')%sempty(PlotParam.Axes)% case of no plot display (pure text table) |
| 4554 | | h_TableDisplay=findobj(hview_field,'tag','TableDisplay'); |
| 4555 | | pos_table=get(h_TableDisplay,'Position'); |
| 4556 | | set(hview_field,'Position',[pos(1)+pos(3)-pos_table(3) pos(2)+pos(4)-pos_table(4) pos_table(3) pos_table(4)]) |
| 4557 | | else |
| 4558 | | Data=get(hview_field,'UserData'); |
| 4559 | | end |
| 4560 | | else |
| 4561 | | hview_field=findobj(allchild(0),'tag','view_field'); |
| 4562 | | if ~isempty(hview_field) |
| 4563 | | delete(hview_field)% delete existing version of set_object |
| 4564 | | end |
| 4565 | | end |
| 4566 | | |
| 4567 | | |
| 4568 | | %------------------------------------------------------------------------ |
| 4569 | | % --- Executes on button press in DeleteObject. |
| 4570 | | %------------------------------------------------------------------------ |
| 4571 | | function DeleteObject_Callback(hObject, eventdata, handles) |
| 4572 | | |
| 4573 | | IndexObj=get(handles.ListObject,'Value');%projection object selected for view_field |
| 4574 | | IndexObj_1=get(handles.ListObject_1,'Value');%projection object selected for uvmat plot |
| 4575 | | if IndexObj>1 && ~isequal(IndexObj,IndexObj_1) % do not delete the object used for the uvmat plot |
| 4576 | | delete_object(IndexObj) |
| 4577 | | end |
| 4578 | | |
| 4579 | | %'DeleteObject': delete a projection object, defined by its index in the Uvmat list or by its graphic handle |
| 4580 | | %------------------------------------------------------------------------ |
| 4581 | | % function DeleteObject(hObject) |
| 4582 | | % |
| 4583 | | % INPUT: |
| 4584 | | % hObject: object index (if integer) or handle of the graphic object. If |
| 4585 | | % hObject is a subobject, the parent object is detected and deleted. |
| 4586 | | |
| 4587 | | function delete_object(IndexObj) |
| 4588 | | |
| 4589 | | huvmat=findobj('tag','uvmat');%handles of the uvmat interface |
| 4590 | | UvData=get(huvmat,'UserData'); |
| 4591 | | hlist_object=findobj(huvmat,'Tag','ListObject');%handles of the object list in the uvmat interface |
| 4592 | | list_str=get(hlist_object,'String');%objet list |
| 4593 | | if ~isempty(UvData) && isfield(UvData, 'ProjObject') && length(UvData.ProjObject)>=IndexObj |
| 4594 | | if isfield(UvData.ProjObject{IndexObj},'DisplayHandle') && isfield(UvData.ProjObject{IndexObj}.DisplayHandle,'uvmat') |
| 4595 | | hdisplay=UvData.ProjObject{IndexObj}.DisplayHandle.uvmat;%handle of the object graphic representation in uvmat |
| 4596 | | for iview=1:length(hdisplay) |
| 4597 | | if ishandle(hdisplay(iview)) && ~isequal(hdisplay(iview),0) |
| 4598 | | ObjectData=get(hdisplay(iview),'UserData'); |
| 4599 | | if isfield(ObjectData,'SubObject') && ~isempty(ObjectData.SubObject) |
| 4600 | | delete(ObjectData.SubObject(ishandle(ObjectData.SubObject)));% delete the graphic 'sub-objects (e.g. projection bounds) |
| 4601 | | end |
| 4602 | | if isfield(ObjectData,'DeformPoint')&& ~isempty(ObjectData.DeformPoint) |
| 4603 | | delete(ObjectData.DeformPoint(ishandle(ObjectData.DeformPoint)));% delete the graphic deformation points |
| 4604 | | delete(hdisplay(iview))% delete the main graphic representation of the object |
| 4605 | | end |
| 4606 | | end |
| 4607 | | ishandle(hdisplay(iview)) |
| 4608 | | end |
| 4609 | | for iobj=IndexObj+1:length(UvData.ProjObject) |
| 4610 | | hdisplay=UvData.ProjObject{iobj}.DisplayHandle.uvmat; |
| 4611 | | for iview=1:length(hdisplay) |
| 4612 | | if ishandle(hdisplay(iview)) && ~isequal(hdisplay(iview),0) |
| 4613 | | PlotData=get(hdisplay(iview),'UserData'); |
| 4614 | | PlotData.IndexObj=iobj-1; |
| 4615 | | set(hdisplay(iview),'UserData',PlotData); |
| 4616 | | end |
| 4617 | | end |
| 4618 | | end |
| 4619 | | end |
| 4620 | | UvData.ProjObject(IndexObj)=[]; |
| 4621 | | end |
| 4622 | | if numel(list_str)>=IndexObj |
| 4623 | | list_str(IndexObj)=[]; |
| 4624 | | end |
| 4625 | | set(huvmat,'UserData',UvData); |
| 4626 | | set(hlist_object,'String',list_str) |
| 4627 | | set(hlist_object,'Value',length(list_str)) |
| 4628 | | hlist_object_1=findobj(huvmat,'Tag','ListObject_1');%handles of the first object list in the uvmat interface |
| 4629 | | old_index=get(hlist_object_1,'Value'); |
| 4630 | | set(hlist_object_1,'String',list_str) |
| 4631 | | if IndexObj<=old_index |
| 4632 | | set(hlist_object_1,'Value',old_index-1) |
| 4633 | | end |
| 4634 | | |
| 4635 | | %------------------------------------------------------------------------ |
| 4636 | | %------------------------------------------------------------------------ |
| 4637 | | % II - TOOLS FROM THE UPPER MENU BAR |
| 4638 | | %------------------------------------------------------------------------ |
| 4639 | | %------------------------------------------------------------------------ |
| | 548 | display_file_name(handles,fileinput) |
| | 549 | end |
| | 550 | end |
| | 551 | set(handles.MenuOpenCampaign,'ForegroundColor',[0 0 0]) |
| | 552 | |
| 5694 | | % path_to_uvmat=which ('uvmat');% check the path of uvmat |
| 5695 | | % pathelp=fileparts(path_to_uvmat); |
| 5696 | | % helpfile=fullfile(pathelp,'uvmat_doc','uvmat_doc.html'); |
| 5697 | | % if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the sub-directory /uvmat_doc of the UVMAT package') |
| | 1555 | |
| | 1556 | |
| | 1557 | |
| | 1558 | |
| | 1559 | |
| | 1560 | |
| | 1561 | |
| | 1562 | |
| | 1563 | |
| | 1564 | %------------------------------------------------------------------------ |
| | 1565 | % --- Called by action in FileIndex edit box |
| | 1566 | function FileIndex_Callback(hObject, eventdata, handles) |
| | 1567 | %------------------------------------------------------------------------ |
| | 1568 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(get(handles.FileIndex,'String')); |
| | 1569 | set(handles.i1,'String',num2str(i1));%update the counters |
| | 1570 | set(handles.i2,'String',num2str(i2)); |
| | 1571 | set(handles.j1,'String',num2str(j1)); |
| | 1572 | set(handles.j2,'String',num2str(j2)); |
| | 1573 | |
| | 1574 | |
| | 1575 | %------------------------------------------------------------------------ |
| | 1576 | % --- Called by action in NomType edit box |
| | 1577 | function NomType_Callback(hObject, eventdata, handles) |
| | 1578 | %------------------------------------------------------------------------ |
| | 1579 | i1=str2num(get(handles.i1,'String')); |
| | 1580 | i2=str2num(get(handles.i2,'String')); |
| | 1581 | j1=str2num(get(handles.j1,'String')); |
| | 1582 | j2=str2num(get(handles.j2,'String')); |
| | 1583 | FileIndex=fullfile_uvmat('','','','',get(handles.NomType,'String'),i1,i2,j1,j2); |
| | 1584 | set(handles.FileIndex,'String',FileIndex) |
| | 1585 | % refresh the current settings and refresh the field view |
| | 1586 | RootPath_Callback(hObject,eventdata,handles) |
| | 1587 | |
| | 1588 | %------------------------------------------------------------------------ |
| | 1589 | % --- Called by action in NomType edit box |
| | 1590 | function NomType_1_Callback(hObject, eventdata, handles) |
| | 1591 | %------------------------------------------------------------------------ |
| | 1592 | i1=str2num(get(handles.i1,'String')); |
| | 1593 | i2=str2num(get(handles.i2,'String')); |
| | 1594 | j1=str2num(get(handles.j1,'String')); |
| | 1595 | j2=str2num(get(handles.j2,'String')); |
| | 1596 | FileIndex=fullfile_uvmat('','','','',get(handles.NomType_1,'String'),i1,i2,j1,j2); |
| | 1597 | set(handles.FileIndex_1,'String',FileIndex) |
| | 1598 | % inputfilerefresh the current settings and inputfilerefresh the field view |
| | 1599 | RootPath_1_Callback(hObject,eventdata,handles) |
| | 1600 | |
| | 1601 | %------------------------------------------------------------------------ |
| | 1602 | % --- Executes on button press in InputFileREFRESH. |
| | 1603 | function InputFileREFRESH_Callback(hObject, eventdata, handles) |
| | 1604 | %------------------------------------------------------------------------ |
| | 1605 | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])% set button color to yellow to indicate that refresh is under action |
| | 1606 | set(handles.uvmat,'Pointer','watch') % set the mouse pointer to 'watch' |
| | 1607 | drawnow |
| | 1608 | % read the current input file name: |
| | 1609 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| | 1610 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
| | 1611 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,tild,FileInfo,MovieObject]=find_file_series(fullfile(RootPath,SubDir),[RootFile FileIndices FileExt]); |
| | 1612 | if isempty(i1_series) |
| | 1613 | fileinput=uigetfile_uvmat('pick an input file',fullfile(RootPath,SubDir)); |
| | 1614 | hh=dir(fileinput); |
| | 1615 | if numel(hh)>1 |
| | 1616 | msgbox_uvmat('ERROR','invalid input, probably a broken link'); |
| | 1617 | else |
| | 1618 | %% display the selected field and related information |
| | 1619 | if isempty(fileinput) |
| | 1620 | errormsg='aborted'; |
| | 1621 | else |
| | 1622 | display_file_name(handles,fileinput,1) |
| | 1623 | end |
| | 1624 | end |
| | 1625 | else |
| | 1626 | % initiate the input file series and refresh the current field view: |
| | 1627 | errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,1); |
| | 1628 | end |
| | 1629 | |
| | 1630 | %% refresh the second series if relevant |
| | 1631 | if ~isempty(errormsg) && get(handles.SubField,'Value') |
| | 1632 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| | 1633 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
| | 1634 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,tild,FileInfo,MovieObject]=find_file_series(fullfile(RootPath,SubDir),[RootFile FileIndices FileExt]); |
| | 1635 | if isempty(i1_series) |
| | 1636 | fileinput=uigetfile_uvmat('pick an input file for the second line',fullfile(RootPath,SubDir)); |
| | 1637 | hh=dir(fileinput); |
| | 1638 | if numel(hh)>1 |
| | 1639 | msgbox_uvmat('ERROR','invalid input, probably a broken link'); |
| | 1640 | else |
| | 1641 | %% display the selected field and related information |
| | 1642 | if isempty(fileinput) |
| | 1643 | errormsg='aborted'; |
| | 1644 | else |
| | 1645 | display_file_name(handles,fileinput,2) |
| | 1646 | end |
| | 1647 | end |
| | 1648 | else |
| | 1649 | % initiate the input file series and inputfilerefresh the current field view: |
| | 1650 | errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,2); |
| | 1651 | end |
| | 1652 | end |
| | 1653 | if ~isempty(errormsg) |
| | 1654 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 1])% put back button color to magenta, input not succesfull |
| | 1655 | end |
| | 1656 | set(handles.uvmat,'Pointer','arrow')% set back the mouse pointer to arrow |
| | 1657 | |
| | 1658 | %------------------------------------------------------------------------ |
| | 1659 | % --- Fills the edit boxes RootPath, RootFile,NomType...from an input file name 'fileinput' |
| | 1660 | function errormsg=display_file_name(handles,fileinput,index) |
| | 1661 | %------------------------------------------------------------------------ |
| | 1662 | %% look for the input file existence |
| | 1663 | errormsg='';%default |
| | 1664 | if ~exist(fileinput,'file') |
| | 1665 | errormsg=['input file ' fileinput ' does not exist']; |
| | 1666 | msgbox_uvmat('ERROR',errormsg) |
| | 1667 | return |
| | 1668 | end |
| | 1669 | |
| | 1670 | %% define the relevant handles for the first field series (index=1) or the second file series (index=2) |
| | 1671 | if ~exist('index','var') |
| | 1672 | index=1; |
| | 1673 | end |
| | 1674 | if index==1 |
| | 1675 | handles_RootPath=handles.RootPath; |
| | 1676 | handles_SubDir=handles.SubDir; |
| | 1677 | handles_RootFile=handles.RootFile; |
| | 1678 | handles_FileIndex=handles.FileIndex; |
| | 1679 | handles_NomType=handles.NomType; |
| | 1680 | handles_FileExt=handles.FileExt; |
| | 1681 | elseif index==2 |
| | 1682 | handles_RootPath=handles.RootPath_1; |
| | 1683 | handles_SubDir=handles.SubDir_1; |
| | 1684 | handles_RootFile=handles.RootFile_1; |
| | 1685 | handles_FileIndex=handles.FileIndex_1; |
| | 1686 | handles_NomType=handles.NomType_1; |
| | 1687 | handles_FileExt=handles.FileExt_1; |
| | 1688 | set(handles.RootPath_1,'Visible','on') |
| | 1689 | set(handles.RootFile_1,'Visible','on') |
| | 1690 | set(handles.SubDir_1,'Visible','on'); |
| | 1691 | set(handles.FileIndex_1,'Visible','on'); |
| | 1692 | set(handles.FileExt_1,'Visible','on'); |
| | 1693 | set(handles.NomType_1,'Visible','on'); |
| | 1694 | set(handles.TimeName_1,'Visible','on') |
| | 1695 | set(handles.TimeValue_1,'Visible','on') |
| | 1696 | end |
| | 1697 | set(handles.InputFileREFRESH,'BackgroundColor',[1 1 0])% paint REFRESH button to yellow to visualise root file input |
| | 1698 | set(handles.uvmat,'Pointer','watch') % set the mouse pointer to 'watch' |
| | 1699 | drawnow |
| | 1700 | |
| | 1701 | %% detect root name, nomenclature and indices in the input file name: |
| | 1702 | [FilePath,FileName,FileExt]=fileparts(fileinput); |
| | 1703 | % detect the file type, get the movie object if relevant, and look for the corresponding file series: |
| | 1704 | % the root name and indices may be corrected by including the first index i1 if a corresponding xml file exists |
| | 1705 | [RootPath,SubDir,RootFile,i1_series,i2_series,j1_series,j2_series,NomType,FileInfo,MovieObject,i1,i2,j1,j2]=find_file_series(FilePath,[FileName FileExt]); |
| | 1706 | FileType=FileInfo.FileType; |
| | 1707 | if strcmp(FileType,'txt') |
| | 1708 | try |
| | 1709 | edit(fileinput) |
| | 1710 | catch ME |
| | 1711 | msgbox_uvmat('ERROR','invalid intput file') |
| | 1712 | end |
| | 1713 | return |
| | 1714 | elseif strcmp(FileType,'xml') |
| | 1715 | editxml(fileinput) |
| | 1716 | return |
| | 1717 | elseif strcmp(FileType,'figure') |
| | 1718 | open(fileinput) |
| | 1719 | return |
| | 1720 | end |
| | 1721 | |
| | 1722 | %% open the file or fill the GUI uvmat according to the detected file type |
| | 1723 | switch FileType |
| | 1724 | case '' |
| | 1725 | msgbox_uvmat('ERROR','invalid input file type') |
| | 1726 | case 'txt' |
| | 1727 | edit(fileinput) |
| | 1728 | case 'figure' %display matlab figure |
| | 1729 | hfig=open(fileinput); |
| | 1730 | set(hfig,'WindowButtonMotionFcn','mouse_motion')%set mouse action functio |
| | 1731 | set(hfig,'WindowButtonUpFcn','mouse_up')%set mouse click action function |
| | 1732 | set(hfig,'WindowButtonUpFcn','mouse_down')%set mouse click action function |
| | 1733 | case 'xml' % edit xml files |
| | 1734 | t=xmltree(fileinput); |
| | 1735 | % the xml file marks a project or project link, open datatree_browser |
| | 1736 | if strcmp(get(t,1,'name'),'Project')&& exist(regexprep(fileinput,'.xml$',''),'dir') |
| | 1737 | datatree_browser(fileinput) |
| | 1738 | else % other xml file, open the xml editor |
| | 1739 | editxml(fileinput); |
| | 1740 | end |
| | 1741 | case 'xls'% Excel file opended by editxml |
| | 1742 | editxml(fileinput); |
| | 1743 | otherwise |
| | 1744 | set(handles_RootPath,'String',RootPath); |
| | 1745 | rootname=fullfile(RootPath,SubDir,RootFile); |
| | 1746 | set(handles_SubDir,'String',['/' SubDir]); |
| | 1747 | set(handles_RootFile,'String',['/' RootFile]); %display the separator |
| | 1748 | indices=fileinput(length(rootname)+1:end); |
| | 1749 | indices(end-length(FileExt)+1:end)=[]; %remove extension |
| | 1750 | set(handles_FileIndex,'String',indices); |
| | 1751 | set(handles_NomType,'String',NomType); |
| | 1752 | set(handles_FileExt,'String',FileExt); |
| | 1753 | if index==1 |
| | 1754 | % fill file index counters if the first file series is opened |
| | 1755 | set(handles.i1,'String',num2str(i1)); |
| | 1756 | set(handles.i2,'String',num2str(i2)); |
| | 1757 | set(handles.j1,'String',num2stra(j1,NomType)); |
| | 1758 | set(handles.j2,'String',num2stra(j2,NomType)); |
| | 1759 | else %read the current field index to synchronise with the first series |
| | 1760 | i1_s=str2num(get(handles.i1,'String')); |
| | 1761 | i2_0=str2num(get(handles.i2,'String')); |
| | 1762 | if ~isempty(i2_0) |
| | 1763 | i2_s=i2_0; |
| | 1764 | else |
| | 1765 | i2_s=i2; |
| | 1766 | end |
| | 1767 | j1_0=stra2num(get(handles.j1,'String')); |
| | 1768 | if ~isempty(j1_0) |
| | 1769 | j1_s=j1_0; |
| | 1770 | else |
| | 1771 | j1_s=j1; |
| | 1772 | end |
| | 1773 | j2_0=stra2num(get(handles.j2,'String')); |
| | 1774 | if ~isempty(j2_0) |
| | 1775 | j2_s=j2_0; |
| | 1776 | else |
| | 1777 | j2_s=j2; |
| | 1778 | end |
| | 1779 | end |
| | 1780 | |
| | 1781 | % synchronise indices of the second input file if it exists |
| | 1782 | if get(handles.SubField,'Value')==1% if the subfield button is activated, update the field numbers |
| | 1783 | Input=read_GUI(handles.InputFile); |
| | 1784 | if ~isfield(Input,'RootPath_1')||strcmp(Input.RootPath_1,'"') |
| | 1785 | Input.RootPath_1=Input.RootPath; |
| | 1786 | end |
| | 1787 | if ~isfield(Input,'SubDir_1')||strcmp(Input.SubDir_1,'"') |
| | 1788 | Input.SubDir_1=Input.SubDir; |
| | 1789 | end |
| | 1790 | if ~isfield(Input,'RootFile_1')||strcmp(Input.RootFile_1,'"') |
| | 1791 | Input.RootFile_1=Input.RootFile; |
| | 1792 | end |
| | 1793 | if ~isfield(Input,'FileExt_1')||strcmp(Input.FileExt_1,'"') |
| | 1794 | Input.FileExt_1=Input.FileExt; |
| | 1795 | end |
| | 1796 | if ~isfield(Input,'NomType_1')||strcmp(Input.NomType_1,'"') |
| | 1797 | Input.NomType_1=Input.NomType; |
| | 1798 | end |
| | 1799 | %updtate the indices of the second field series to correspond to the newly opened one |
| | 1800 | FileName_1=fullfile_uvmat(Input.RootPath_1,Input.SubDir_1,Input.RootFile_1,Input.FileExt_1,Input.NomType_1,i1_s,i2_s,j1_s,j2_s); |
| | 1801 | if exist(FileName_1,'file') |
| | 1802 | FileIndex_1=fullfile_uvmat('','','','',Input.NomType_1,i1_s,i2_s,j1_s,j2_s); |
| | 1803 | else |
| | 1804 | FileIndex_1=fullfile_uvmat('','','','',Input.NomType_1,i1,i2,j1,j2); |
| | 1805 | msgbox_uvmat('WARNING','unable to synchronise the indices of the two series') |
| | 1806 | end |
| | 1807 | set(handles.FileIndex_1,'String',FileIndex_1) |
| | 1808 | end |
| | 1809 | |
| | 1810 | %enable other menus |
| | 1811 | set(handles.MenuOpenCampaign,'Enable','on') |
| | 1812 | set(handles.MenuExport,'Enable','on') |
| | 1813 | set(handles.MenuExportFigure,'Enable','on') |
| | 1814 | set(handles.MenuExportMovie,'Enable','on') |
| | 1815 | set(handles.MenuTools,'Enable','on') |
| | 1816 | |
| | 1817 | % initiate input file series and inputfilerefresh the current field view: |
| | 1818 | update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,MovieObject,index); |
| | 1819 | |
| | 1820 | end |
| | 1821 | |
| | 1822 | %% update list of recent files in the menubar and save it for future opening |
| | 1823 | MenuFile=[{get(handles.MenuFile_1,'Label')};{get(handles.MenuFile_2,'Label')};... |
| | 1824 | {get(handles.MenuFile_3,'Label')};{get(handles.MenuFile_4,'Label')};{get(handles.MenuFile_5,'Label')}]; |
| | 1825 | str_find=strcmp(fileinput,MenuFile); |
| | 1826 | if isempty(find(str_find,1)) |
| | 1827 | MenuFile=[{fileinput};MenuFile];%insert the current file if not already in the list |
| | 1828 | end |
| | 1829 | for ifile=1:min(length(MenuFile),5) |
| | 1830 | set(handles.(['MenuFile_' num2str(ifile)]),'Label',MenuFile{ifile}); |
| | 1831 | %set(handles.(['MenuFile_' num2str(ifile) '_1']),'Label',MenuFile{ifile}); |
| | 1832 | end |
| | 1833 | dir_perso=prefdir; |
| | 1834 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
| | 1835 | if exist(profil_perso,'file') |
| | 1836 | save (profil_perso,'MenuFile','RootPath','-append'); %store the file names for future opening of uvmat |
| | 1837 | else |
| | 1838 | save (profil_perso,'MenuFile','RootPath','-V6'); %store the file names for future opening of uvmat |
| | 1839 | end |
| | 1840 | |
| | 1841 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% paint back button to red to indicate update is finished |
| | 1842 | set(handles.uvmat,'Pointer','arrow')% set back the mouse pointer to arrow |
| | 1843 | |
| | 1844 | |
| | 1845 | %------------------------------------------------------------------------ |
| | 1846 | % --- Update information about a new field series (indices to scan, timing, |
| | 1847 | % calibration from an xml file, then inputfilerefresh current plots |
| | 1848 | function errormsg=update_rootinfo(handles,i1_series,i2_series,j1_series,j2_series,FileInfo,VideoObject,index) |
| | 1849 | %------------------------------------------------------------------------ |
| | 1850 | errormsg=''; %default error msg |
| | 1851 | |
| | 1852 | %% define the relevant handles depending on the index (1=first file series, 2= second file series) |
| | 1853 | if ~exist('index','var') |
| | 1854 | index=1; |
| | 1855 | end |
| | 1856 | if index==1 |
| | 1857 | handles_Fields=handles.FieldName; |
| | 1858 | elseif index==2 |
| | 1859 | handles_Fields=handles.FieldName_1; |
| | 1860 | end |
| | 1861 | set(handles.FixVelType,'Value',0); %desactivate fixed veltype by default |
| | 1862 | |
| | 1863 | %% record info in UserData of the figure uvmat |
| | 1864 | UvData=get(handles.uvmat,'UserData');%huvmat=handles of the uvmat interface |
| | 1865 | UvData.NewSeries=1; %flag for REFRESH: begin a new series |
| | 1866 | UvData.FileName_1='';% name of the current second field (used to detect a constant field during file scanning) |
| | 1867 | UvData.FileType{index}=FileInfo.FileType; |
| | 1868 | UvData.FileInfo{index}=FileInfo; |
| | 1869 | UvData.MovieObject{index}=VideoObject; |
| | 1870 | UvData.i1_series{index}=i1_series; |
| | 1871 | UvData.i2_series{index}=i2_series; |
| | 1872 | UvData.j1_series{index}=j1_series; |
| | 1873 | UvData.j2_series{index}=j2_series; |
| | 1874 | |
| | 1875 | %% read timing and total frame number from the current file (e.g. movie files) |
| | 1876 | TimeUnit='';%default |
| | 1877 | TimeName='';%default |
| | 1878 | XmlData.Time=[];%default |
| | 1879 | ColorType='falsecolor'; %default |
| | 1880 | if isfield(FileInfo,'FrameRate')% frame rate given in the file (case of video data) |
| | 1881 | TimeUnit='s'; |
| | 1882 | if isempty(j1_series); %frame index along i |
| | 1883 | XmlData.Time=zeros(FileInfo.NumberOfFrames+1,2); |
| | 1884 | XmlData.Time(:,2)=(0:1/FileInfo.FrameRate:(FileInfo.NumberOfFrames)/FileInfo.FrameRate)'; |
| | 1885 | else |
| | 1886 | XmlData.Time=[0;ones(size(i1_series,3)-1,1)]*(0:1/FileInfo.FrameRate:(FileInfo.NumberOfFrames)/FileInfo.FrameRate); |
| | 1887 | end |
| | 1888 | if strcmp(FileInfo.FileType,'rdvision') |
| | 1889 | TimeName='timestamp'; |
| | 1890 | else |
| | 1891 | TimeName='video'; |
| | 1892 | end |
| | 1893 | end |
| | 1894 | if isfield(FileInfo,'ColorType') |
| | 1895 | ColorType=FileInfo.ColorType;%='truecolor' for color images |
| | 1896 | end |
| | 1897 | set(handles.CheckBW,'Value',strcmp(ColorType,'grayscale'))% select handles.CheckBW if grayscale image |
| | 1898 | |
| | 1899 | %% read parameters (time, geometric calibration..) from a documentation file (.xml advised) |
| | 1900 | XmlData.GeometryCalib=[];%default |
| | 1901 | if index==1 |
| | 1902 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| | 1903 | else |
| | 1904 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| | 1905 | end |
| | 1906 | XmlFileName=find_imadoc(RootPath,SubDir,RootFile,FileExt); |
| | 1907 | [tild,tild,DocExt]=fileparts(XmlFileName); |
| | 1908 | warntext='';%default warning message |
| | 1909 | NbSlice=1;%default |
| | 1910 | ImaDoc_str=''; |
| | 1911 | if ~isempty(XmlFileName) |
| | 1912 | set(handles.view_xml,'Visible','on') |
| | 1913 | set(handles.view_xml,'BackgroundColor',[1 1 0])% paint to yellow color to indicate reading of the xml file |
| | 1914 | set(handles.view_xml,'String','view .xml') |
| | 1915 | drawnow |
| | 1916 | [XmlDataRead,warntext]=imadoc2struct(XmlFileName); |
| | 1917 | if ~isempty(warntext) |
| | 1918 | msgbox_uvmat('WARNING',warntext) |
| | 1919 | end |
| | 1920 | if ~isempty(XmlDataRead) |
| | 1921 | ImaDoc_str=['view ' DocExt]; % DocExt= '.xml' or .civ (obsolete case) |
| | 1922 | if isfield(XmlDataRead,'TimeUnit')&& ~isempty(XmlDataRead.TimeUnit) |
| | 1923 | TimeUnit=XmlDataRead.TimeUnit; |
| | 1924 | end |
| | 1925 | if isfield(XmlDataRead,'Time')&& ~isempty(XmlDataRead.Time) |
| | 1926 | XmlData.Time=XmlDataRead.Time; |
| | 1927 | end |
| | 1928 | set(handles.view_xml,'BackgroundColor',[1 1 1])% paint back to white |
| | 1929 | drawnow |
| | 1930 | if isfield(XmlDataRead, 'GeometryCalib') && ~isempty(XmlDataRead.GeometryCalib) |
| | 1931 | XmlData.GeometryCalib=XmlDataRead.GeometryCalib; |
| | 1932 | if isfield(XmlData.GeometryCalib,'CheckVolumeScan') && isequal(XmlData.GeometryCalib.CheckVolumeScan,1) |
| | 1933 | set (handles.slices,'String','volume') |
| | 1934 | end |
| | 1935 | % check whether the GUI geometry_calib is opened |
| | 1936 | hgeometry_calib=findobj('tag','geometry_calib'); |
| | 1937 | if ~isempty(hgeometry_calib) % check whether the display of the GUI geometry_calib is consistent with the current calib param |
| | 1938 | GUserData=get(hgeometry_calib,'UserData'); |
| | 1939 | if ~(isfield(GUserData,'XmlInputFile') && strcmp(GUserData.XmlInputFile,XmlFileName)) |
| | 1940 | answer=msgbox_uvmat('INPUT_Y-N','refresh the display of the GUI geometry_calib with the new input data?'); |
| | 1941 | if strcmp(answer,'Yes') |
| | 1942 | geometry_calib(XmlFileName);%diplay the new calibration points and parameters in geometry_calib |
| | 1943 | end |
| | 1944 | end |
| | 1945 | end |
| | 1946 | end |
| | 1947 | end |
| | 1948 | end |
| | 1949 | if isempty(ImaDoc_str) |
| | 1950 | set(handles.view_xml,'Visible','off') % no .xml (or .civ) file detected |
| | 1951 | else |
| | 1952 | set(handles.view_xml,'String',ImaDoc_str)% indicate that a xml file has been detected |
| | 1953 | end |
| | 1954 | |
| | 1955 | %% Define timing |
| | 1956 | % time not set by the input file: images or civ data: indicate that time is read from the xml file |
| | 1957 | FileType=FileInfo.FileType; |
| | 1958 | if isfield(XmlData,'Time')&& ~isempty(XmlData.Time) && ... |
| | 1959 | (strcmp(FileType,'image')|| strcmp(FileType,'multimage'))%||strcmp(FileType,'civdata')||strcmp(FileType,'civx')) |
| | 1960 | TimeName='xml'; |
| | 1961 | elseif strcmp(FileType,'civdata') |
| | 1962 | TimeName='civdata'; |
| | 1963 | elseif strcmp(FileType,'civx') |
| | 1964 | TimeName='civx'; |
| | 1965 | end |
| | 1966 | if index==1 |
| | 1967 | set(handles.TimeName,'String',TimeName) |
| | 1968 | else |
| | 1969 | set(handles.TimeName_1,'String',TimeName) |
| | 1970 | set(handles.TimeName_1,'Visible','on') |
| | 1971 | end |
| | 1972 | |
| | 1973 | %% store last index in handles.MaxIndex_i and .MaxIndex_j |
| | 1974 | nbfield=max(max(max(i2_series))); |
| | 1975 | if isempty(nbfield) |
| | 1976 | nbfield=max(max(max(i1_series))); |
| | 1977 | end |
| | 1978 | nbfield_j=max(max(max(j2_series))); |
| | 1979 | if isempty(nbfield_j) |
| | 1980 | nbfield_j=max(max(max(j1_series))); |
| | 1981 | end |
| | 1982 | if isfield(XmlData,'Time')&& ~isempty(XmlData.Time) |
| | 1983 | %transform .Time to a column vector if it is a line vector the nomenclature uses a single index |
| | 1984 | if isequal(size(XmlData.Time,1),1) |
| | 1985 | XmlData.Time=(XmlData.Time)'; |
| | 1986 | end |
| | 1987 | end |
| | 1988 | last_i_cell=get(handles.MaxIndex_i,'String'); |
| | 1989 | if isempty(nbfield) |
| | 1990 | last_i_cell{index}=''; |
| | 1991 | else |
| | 1992 | last_i_cell{index}=num2str(nbfield); |
| | 1993 | end |
| | 1994 | set(handles.MaxIndex_i,'String',last_i_cell) |
| | 1995 | last_j_cell=get(handles.MaxIndex_j,'String'); |
| | 1996 | if isempty(nbfield_j) |
| | 1997 | last_j_cell{index}=''; |
| | 1998 | else |
| | 1999 | last_j_cell{index}=num2str(nbfield_j); |
| | 2000 | end |
| | 2001 | set(handles.MaxIndex_j,'String',last_j_cell); |
| | 2002 | |
| | 2003 | %% store geometric calibration in UvData |
| | 2004 | if isfield(XmlData,'GeometryCalib') |
| | 2005 | GeometryCalib=XmlData.GeometryCalib; |
| | 2006 | if isempty(GeometryCalib) |
| | 2007 | set(handles.pxcmx,'String','') |
| | 2008 | set(handles.pxcmy,'String','') |
| | 2009 | set(handles.pxcmx,'Visible','off') |
| | 2010 | set(handles.pxcmy,'Visible','off') |
| | 2011 | set(handles.TransformName,'Value',1); % no transform by default |
| | 2012 | else |
| | 2013 | set(handles.pxcmx,'Visible','on') |
| | 2014 | set(handles.pxcmy,'Visible','on') |
| | 2015 | if (isfield(GeometryCalib,'R')&& ~isequal(GeometryCalib.R(2,1),0) && ~isequal(GeometryCalib.R(1,2),0)) ||... |
| | 2016 | (isfield(GeometryCalib,'kappa1')&& ~isequal(GeometryCalib.kappa1,0)) |
| | 2017 | set(handles.pxcmx,'String','var') |
| | 2018 | set(handles.pxcmy,'String','var') |
| | 2019 | elseif isfield(GeometryCalib,'fx_fy') |
| | 2020 | pixcmx=GeometryCalib.fx_fy(1);%*GeometryCalib.R(1,1)*GeometryCalib.sx/(GeometryCalib.Tz*GeometryCalib.dpx); |
| | 2021 | pixcmy=GeometryCalib.fx_fy(2);%*GeometryCalib.R(2,2)/(GeometryCalib.Tz*GeometryCalib.dpy); |
| | 2022 | set(handles.pxcmx,'String',num2str(pixcmx)) |
| | 2023 | set(handles.pxcmy,'String',num2str(pixcmy)) |
| | 2024 | end |
| | 2025 | if ~get(handles.CheckFixLimits,'Value') |
| | 2026 | set(handles.TransformName,'Value',3); % phys transform by default if fixedLimits is off |
| | 2027 | end |
| | 2028 | if isfield(GeometryCalib,'SliceCoord') |
| | 2029 | siz=size(GeometryCalib.SliceCoord); |
| | 2030 | if siz(1)>1 |
| | 2031 | NbSlice=siz(1); |
| | 2032 | set(handles.slices,'Visible','on') |
| | 2033 | set(handles.slices,'Value',1) |
| | 2034 | end |
| | 2035 | if isfield(GeometryCalib,'CheckVolumeScan') && isequal(GeometryCalib.CheckVolumeScan,1) |
| | 2036 | set(handles.num_NbSlice,'Visible','off') |
| | 2037 | else |
| | 2038 | set(handles.num_NbSlice,'Visible','on') |
| | 2039 | set(handles.num_NbSlice,'String',num2str(NbSlice)) |
| | 2040 | end |
| | 2041 | slices_Callback([],[], handles) |
| | 2042 | end |
| | 2043 | end |
| | 2044 | end |
| | 2045 | |
| | 2046 | %% update the data attached to the uvmat interface |
| | 2047 | if ~isempty(TimeUnit) |
| | 2048 | if index==2 && isfield(UvData,'TimeUnit') && ~strcmp(UvData.TimeUnit,TimeUnit) |
| | 2049 | msgbox_uvmat('WARNING',['time unit for second file series ' TimeUnit ' inconsistent with first series']) |
| | 2050 | else |
| | 2051 | UvData.TimeUnit=TimeUnit; |
| | 2052 | end |
| | 2053 | end |
| | 2054 | UvData.XmlData{index}=XmlData; |
| | 2055 | UvData.NewSeries=1; |
| | 2056 | |
| | 2057 | %display warning message |
| | 2058 | if ~isequal(warntext,'') |
| | 2059 | msgbox_uvmat('WARNING',warntext); |
| | 2060 | end |
| | 2061 | |
| | 2062 | %% set default options in menu 'FieldName' |
| | 2063 | switch FileType |
| | 2064 | case {'civx','civdata'} |
| | 2065 | [FieldList,ColorList]=set_field_list('U','V','C'); |
| | 2066 | set(handles_Fields,'String',[{'image'};FieldList;{'get_field...'}]);%standard menu for civx data |
| | 2067 | set(handles_Fields,'Value',2) % set menu to 'velocity |
| | 2068 | if index==1 |
| | 2069 | set(handles.FieldName_1,'Value',1); |
| | 2070 | set(handles.FieldName_1,'String',[{''};{'image'};FieldList;{'get_field...'}]);%standard menu for civx data reproduced for the second field |
| | 2071 | end |
| | 2072 | set(handles.ColorScalar,'Value',1) |
| | 2073 | set(handles.ColorScalar,'String',ColorList) |
| | 2074 | set(handles.Vectors,'Visible','on') |
| | 2075 | %set(handles.Coord_x,'Value',1); |
| | 2076 | set(handles.Coord_x,'String','X'); |
| | 2077 | set(handles.Coord_y,'String','Y'); |
| | 2078 | case 'netcdf' |
| | 2079 | set(handles_Fields,'Value',1) |
| | 2080 | set(handles_Fields,'String',{'get_field...'}) |
| | 2081 | if index==1 |
| | 2082 | FieldName_Callback([],[], handles) |
| | 2083 | else |
| | 2084 | FieldName_1_Callback([],[], handles) |
| | 2085 | end |
| | 2086 | otherwise |
| | 2087 | set(handles_Fields,'Value',1) % set menu to 'image' |
| | 2088 | set(handles_Fields,'String',{'image'}) |
| | 2089 | %set(handles.Coord_x,'Value',1); |
| | 2090 | set(handles.Coord_x,'String','Coord_x'); |
| | 2091 | set(handles.Coord_y,'String','Coord_y'); |
| | 2092 | end |
| | 2093 | set(handles.uvmat,'UserData',UvData) |
| | 2094 | |
| | 2095 | %% set index navigation options |
| | 2096 | scan_option='i';%default |
| | 2097 | state_j='off'; %default |
| | 2098 | if index==2 |
| | 2099 | if get(handles.scan_j,'Value') |
| | 2100 | scan_option='j'; %keep the scan option for the second file series |
| | 2101 | end |
| | 2102 | if strcmp(get(handles.j1,'Visible'),'on') |
| | 2103 | state_j='on'; |
| | 2104 | end |
| | 2105 | end |
| | 2106 | [ref_j,ref_i]=find(squeeze(i1_series(1,:,:))); |
| | 2107 | if ~isempty(j1_series) |
| | 2108 | state_j='on'; |
| | 2109 | if index==1 |
| | 2110 | if isequal(ref_i,ref_i(1)*ones(size(ref_j)))% if ref_i is always equal to its first value |
| | 2111 | scan_option='j'; %scan j indext |
| | 2112 | end |
| | 2113 | end |
| | 2114 | end |
| | 2115 | if isequal(scan_option,'i') |
| | 2116 | diff_ref_i=diff(ref_i,1); |
| | 2117 | if isempty(diff_ref_i) |
| | 2118 | diff_ref_i=1; |
| | 2119 | end |
| | 2120 | if isequal (diff_ref_i,diff_ref_i(1)*ones(size(diff_ref_i))) |
| | 2121 | set(handles.num_IndexIncrement,'String',num2str(diff_ref_i(1))) |
| | 2122 | end |
| | 2123 | set(handles.scan_i,'Value',1) |
| | 2124 | scan_i_Callback([],[], handles); |
| | 2125 | else |
| | 2126 | diff_ref_j=diff(ref_j); |
| | 2127 | if isempty(diff_ref_j) |
| | 2128 | diff_ref_j=1; |
| | 2129 | end |
| | 2130 | if isequal (diff_ref_j,diff_ref_j(1)*ones(size(diff_ref_j))) |
| | 2131 | set(handles.num_IndexIncrement,'String',num2str(diff_ref_j(1))) |
| | 2132 | end |
| | 2133 | set(handles.scan_j,'Value',1) |
| | 2134 | scan_j_Callback([],[], handles); |
| | 2135 | end |
| | 2136 | set(handles.scan_j,'Visible',state_j) |
| | 2137 | set(handles.j1,'Visible',state_j) |
| | 2138 | set(handles.j2,'Visible',state_j) |
| | 2139 | set(handles.MaxIndex_j,'Visible',state_j); |
| | 2140 | set(handles.j_text,'Visible',state_j); |
| | 2141 | if ~isempty(i2_series)||~isempty(j2_series) |
| | 2142 | set(handles.CheckFixPair,'Visible','on') |
| | 2143 | elseif index==1 |
| | 2144 | set(handles.CheckFixPair,'Visible','off') |
| | 2145 | end |
| | 2146 | |
| | 2147 | %% apply the effect of the transform fct and view the field |
| | 2148 | transform=get(handles.TransformPath,'UserData'); |
| | 2149 | if index==2 && (~isa(transform,'function_handle')||nargin(transform)<3) |
| | 2150 | set(handles.TransformName,'value',2); % set transform to sub_field if the current fct doe not accept two input fields |
| | 2151 | end |
| | 2152 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0])% set button color to red to indicate that refresh has been updated |
| | 2153 | TransformName_Callback([],[],handles)% callback for the selection of transform function, then refresh the current plot |
| | 2154 | mask_test=get(handles.CheckMask,'value'); |
| | 2155 | if mask_test |
| | 2156 | MaskData=get(handles.CheckMask,'UserData'); |
| | 2157 | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle) |
| | 2158 | delete(MaskData.maskhandle) %delete old mask |
| | 2159 | end |
| | 2160 | CheckMask_Callback([],[],handles) |
| | 2161 | end |
| | 2162 | |
| | 2163 | %------------------------------------------------------------------------ |
| | 2164 | % --- switch file index scanning options scan_i and scan_j in an exclusive way |
| | 2165 | %------------------------------------------------------------------------ |
| | 2166 | function scan_i_Callback(hObject, eventdata, handles) |
| | 2167 | |
| | 2168 | if get(handles.scan_i,'Value')==1 |
| | 2169 | set(handles.scan_j,'Value',0) |
| | 2170 | else |
| | 2171 | set(handles.scan_j,'Value',1) |
| | 2172 | end |
| | 2173 | scan_j_Callback(hObject, eventdata, handles) |
| | 2174 | |
| | 2175 | %------------------------------------------------------------------------ |
| | 2176 | % --- switch file index scanning options scan_i and scan_j in an exclusive way |
| | 2177 | %------------------------------------------------------------------------ |
| | 2178 | function scan_j_Callback(hObject, eventdata, handles) |
| | 2179 | |
| | 2180 | if get(handles.scan_j,'Value')==1 |
| | 2181 | set(handles.scan_i,'Value',0) |
| | 2182 | else |
| | 2183 | set(handles.scan_i,'Value',1) |
| | 2184 | set(handles.CheckFixPair,'Visible','off') |
| | 2185 | end |
| | 2186 | |
| | 2187 | %------------------------------------------------------------------------ |
| | 2188 | function i1_Callback(hObject, eventdata, handles) |
| | 2189 | %------------------------------------------------------------------------ |
| | 2190 | update_ij(handles,1) |
| | 2191 | |
| | 2192 | %------------------------------------------------------------------------ |
| | 2193 | function i2_Callback(hObject, eventdata, handles) |
| | 2194 | %------------------------------------------------------------------------ |
| | 2195 | update_ij(handles,2) |
| | 2196 | |
| | 2197 | %------------------------------------------------------------------------ |
| | 2198 | function j1_Callback(hObject, eventdata, handles) |
| | 2199 | %------------------------------------------------------------------------ |
| | 2200 | update_ij(handles,3) |
| | 2201 | |
| | 2202 | %------------------------------------------------------------------------ |
| | 2203 | function j2_Callback(hObject, eventdata, handles) |
| | 2204 | %------------------------------------------------------------------------ |
| | 2205 | update_ij(handles,4) |
| | 2206 | |
| | 2207 | %------------------------------------------------------------------------ |
| | 2208 | %--- update the index display after action on edit boxes i1, i2, j1 or j2 |
| | 2209 | %------------------------------------------------------------------------ |
| | 2210 | function update_ij(handles,index_rank) |
| | 2211 | |
| | 2212 | NomType=get(handles.NomType,'String'); |
| | 2213 | indices=get(handles.FileIndex,'String'); |
| | 2214 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(indices);% the indices for the second series taken from FileIndex |
| | 2215 | switch index_rank |
| | 2216 | case 1 |
| | 2217 | indices=fullfile_uvmat('','','','',NomType,stra2num(get(handles.i1,'String')),i2,j1,j2); |
| | 2218 | % set(handles.i1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| | 2219 | case 2 |
| | 2220 | indices=fullfile_uvmat('','','','',NomType,i1,stra2num(get(handles.i2,'String')),j1,j2); |
| | 2221 | % set(handles.i2,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| | 2222 | case 3 |
| | 2223 | indices=fullfile_uvmat('','','','',NomType,i1,i2,stra2num(get(handles.j1,'String')),j2); |
| | 2224 | % set(handles.j1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| | 2225 | case 4 |
| | 2226 | indices=fullfile_uvmat('','','','',NomType,i1,i2,j1,stra2num(get(handles.j2,'String'))); |
| | 2227 | % set(handles.j2,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| | 2228 | end |
| | 2229 | set(handles.FileIndex,'String',indices) |
| | 2230 | %set(handles.FileIndex,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| | 2231 | % update the second index if relevant |
| | 2232 | if strcmp(get(handles.FileIndex_1,'Visible'),'on') |
| | 2233 | NomType_1=get(handles.NomType_1,'String'); |
| | 2234 | indices_1=get(handles.FileIndex_1,'String'); |
| | 2235 | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(indices_1);% the indices for the second series taken from FileIndex_1 |
| | 2236 | switch index_rank |
| | 2237 | case 1 |
| | 2238 | indices_1=fullfile_uvmat('','','','',NomType_1,stra2num(get(handles.i1,'String')),i2_1,j1_1,j2_1); |
| | 2239 | case 2 |
| | 2240 | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,stra2num(get(handles.i2,'String')),j1_1,j2_1); |
| | 2241 | case 3 |
| | 2242 | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,i2_1,stra2num(get(handles.j1,'String')),j2_1); |
| | 2243 | case 4 |
| | 2244 | indices_1=fullfile_uvmat('','','','',NomType_1,i1_1,i2_1,j1_1,stra2num(get(handles.j2,'String'))); |
| | 2245 | end |
| | 2246 | set(handles.FileIndex_1,'String',indices_1) |
| | 2247 | set(handles.FileIndex_1,'BackgroundColor',[0.7 0.7 0.7])% mark the edit box in grey, then RUN0 will mark it in white for confirmation |
| | 2248 | end |
| | 2249 | |
| | 2250 | %------------------------------------------------------------------------ |
| | 2251 | |
| | 2252 | %------------------------------------------------------------------------ |
| | 2253 | function slices_Callback(hObject, eventdata, handles) |
| | 2254 | %------------------------------------------------------------------------ |
| | 2255 | if strcmp(get(handles.slices,'String'),'slices') |
| | 2256 | if get(handles.slices,'Value')==1 |
| | 2257 | set(handles.num_NbSlice,'Visible','on') |
| | 2258 | set(handles.z_text,'Visible','on') |
| | 2259 | set(handles.z_index,'Visible','on') |
| | 2260 | num_NbSlice_Callback(hObject, eventdata, handles) |
| | 2261 | else |
| | 2262 | set(handles.num_NbSlice,'Visible','off') |
| | 2263 | set(handles.z_text,'Visible','off') |
| | 2264 | set(handles.z_index,'Visible','off') |
| | 2265 | set(handles.masklevel,'Value',1) |
| | 2266 | set(handles.masklevel,'String',{'1'}) |
| | 2267 | end |
| | 2268 | end |
| | 2269 | |
| | 2270 | %------------------------------------------------------------------------ |
| | 2271 | function num_NbSlice_Callback(hObject, eventdata, handles) |
| | 2272 | %------------------------------------------------------------------------ |
| | 2273 | mode=get(handles.slices,'String'); |
| | 2274 | nb_slice_str=get(handles.num_NbSlice,'String'); |
| | 2275 | if strcmp(mode,'volume') |
| | 2276 | z=stra2num(get(handles.j1,'String')); |
| | 2277 | else |
| | 2278 | num=str2double(get(handles.i1,'String')); |
| | 2279 | nbslice=str2double(get(handles.num_NbSlice,'String')); |
| | 2280 | z=mod(num-1,nbslice)+1; |
| | 2281 | end |
| | 2282 | set(handles.z_index,'String',num2str(z)) |
| | 2283 | for ilist=1:nbslice |
| | 2284 | list_index{ilist,1}=num2str(ilist); |
| | 2285 | end |
| | 2286 | set(handles.masklevel,'String',list_index) |
| | 2287 | set(handles.masklevel,'Value',z) |
| | 2288 | |
| | 2289 | %------------------------------------------------------------------------ |
| | 2290 | % --- Executes on button press in view_xml. |
| | 2291 | %------------------------------------------------------------------------ |
| | 2292 | function view_xml_Callback(hObject, eventdata, handles) |
| | 2293 | |
| | 2294 | % if TimeName defined, open the xml file corresponding to the first file |
| | 2295 | % series, else open the xml file corresponding to the second series |
| | 2296 | if isempty(get(handles.TimeName,'String'))% open the xml file corresponding to the secodn file series |
| | 2297 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes_1(handles); |
| | 2298 | else |
| | 2299 | [RootPath,SubDir,RootFile,FileIndices,FileExt]=read_file_boxes(handles); |
| | 2300 | end |
| | 2301 | option=get(handles.view_xml,'String'); |
| | 2302 | if isequal(option,'view .xml') |
| | 2303 | FileXml=fullfile(RootPath,[SubDir '.xml']); |
| | 2304 | if ~exist(FileXml,'file')% case of civ files , removes the extension for subdir |
| | 2305 | FileXml=fullfile(RootPath,[regexprep(SubDir,'\..+$','') '.xml']); |
| | 2306 | end |
| | 2307 | heditxml=editxml(FileXml); |
| | 2308 | end |
| | 2309 | |
| | 2310 | %------------------------------------------------------------------------ |
| | 2311 | % --- Executes on button press in CheckMask. |
| | 2312 | function CheckMask_Callback(hObject, eventdata, handles) |
| | 2313 | %------------------------------------------------------------------------ |
| | 2314 | %case of view mask selection |
| | 2315 | if isequal(get(handles.CheckMask,'Value'),1) |
| | 2316 | [RootPath,SubDir]=read_file_boxes(handles); |
| | 2317 | MaskSubDir=regexprep(SubDir,'\..*','');%take the root part of SubDir, before the first dot '.' |
| | 2318 | MaskPath=fullfile(RootPath,[MaskSubDir '.mask']); |
| | 2319 | mdetect=0; |
| | 2320 | if exist(MaskPath,'dir') |
| | 2321 | ListStruct=dir(MaskPath);%look for a mask file |
| | 2322 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
| | 2323 | check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
| | 2324 | ListFiles=ListCells(1,:);%list of file and dri names |
| | 2325 | ListFiles=ListFiles(~check_dir);%list of file names (excluding dir) |
| | 2326 | if ~isempty(ListFiles) |
| | 2327 | for ifile=1:numel(ListFiles) |
| | 2328 | [tild,tild,MaskExt]=fileparts(ListFiles{1}); |
| | 2329 | [tild,tild,MaskFile{ifile},i1_series,i2_series,j1_series,j2_series,MaskNomType,MaskFileInfo]=find_file_series(MaskPath,ListFiles{ifile},0); |
| | 2330 | MaskFileType=MaskFileInfo.FileType; |
| | 2331 | if strcmp(MaskFileType,'image') && isempty(i2_series) && isempty(j2_series) |
| | 2332 | mdetect=1; |
| | 2333 | end |
| | 2334 | if ~strcmp(MaskFile{ifile},MaskFile{1}) |
| | 2335 | mdetect=0;% cancel detection test in case of multiple masks, use the brower for selection |
| | 2336 | break |
| | 2337 | end |
| | 2338 | end |
| | 2339 | end |
| | 2340 | RootPath=MaskPath; |
| | 2341 | end |
| | 2342 | if mdetect==0 |
| | 2343 | MaskFullName=uigetfile_uvmat('pick a mask image file:',RootPath,'image'); |
| | 2344 | if isempty(MaskFullName) |
| | 2345 | set(handles.CheckMask,'Value',0) |
| | 2346 | end |
| | 2347 | [MaskPath,MaskName,MaskExt]=fileparts(MaskFullName); |
| | 2348 | [tild,tild,MaskFile,i1_series,i2_series,j1_series,j2_series,MaskNomType]=find_file_series(MaskPath,[MaskName MaskExt],0); |
| | 2349 | if ~(isempty(i2_series) && isempty(j2_series)) |
| | 2350 | MaskNomType='*'; |
| | 2351 | end |
| | 2352 | end |
| | 2353 | Mask.Path=MaskPath; |
| | 2354 | if isempty(MaskFile) |
| | 2355 | Mask.File=''; |
| | 2356 | elseif ischar(MaskFile) |
| | 2357 | Mask.File=MaskFile; |
| | 2358 | else |
| | 2359 | Mask.File=MaskFile{1}; |
| | 2360 | end |
| | 2361 | Mask.Ext=MaskExt; |
| | 2362 | Mask.NomType=MaskNomType; |
| | 2363 | set(handles.CheckMask,'UserData',Mask); |
| | 2364 | errormsg=update_mask(handles); |
| | 2365 | else % desactivate mask display |
| | 2366 | MaskData=get(handles.CheckMask,'UserData'); |
| | 2367 | if isfield(MaskData,'maskhandle') && ishandle(MaskData.maskhandle) |
| | 2368 | delete(MaskData.maskhandle) |
| | 2369 | end |
| | 2370 | set(handles.CheckMask,'UserData',[]) |
| | 2371 | UvData=get(handles.uvmat,'UserData'); |
| | 2372 | if isfield(UvData,'MaskName') |
| | 2373 | UvData=rmfield(UvData,'MaskName'); |
| | 2374 | set(handles.uvmat,'UserData',UvData) |
| | 2375 | end |
| | 2376 | set(handles.CheckMask,'BackgroundColor',[0.7 0.7 0.7]) |
| | 2377 | end |
| | 2378 | |
| | 2379 | %------------------------------------------------------------------------ |
| | 2380 | function errormsg=update_mask(handles) |
| | 2381 | %------------------------------------------------------------------------ |
| | 2382 | errormsg=[];%default |
| | 2383 | Mask=get(handles.CheckMask,'UserData'); |
| | 2384 | MaskIndex=1; |
| | 2385 | if strcmp(get(handles.z_index,'Visible'),'on') |
| | 2386 | MaskIndex=str2num(get(handles.z_index,'String')); |
| | 2387 | end |
| | 2388 | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
| | 2389 | uistack(Mask.maskhandle,'top'); |
| | 2390 | end |
| | 2391 | MaskName=fullfile_uvmat(Mask.Path,'',Mask.File,Mask.Ext,Mask.NomType,MaskIndex); |
| | 2392 | UvData=get(handles.uvmat,'UserData'); |
| | 2393 | |
| | 2394 | %% update mask image if the mask is new |
| | 2395 | if ~ (isfield(UvData,'MaskName') && isequal(UvData.MaskName,MaskName)) |
| | 2396 | UvData.MaskName=MaskName; %update the recorded name on UvData |
| | 2397 | set(handles.uvmat,'UserData',UvData); |
| | 2398 | if ~exist(MaskName,'file') |
| | 2399 | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
| | 2400 | delete(Mask.maskhandle) |
| | 2401 | end |
| | 2402 | else |
| | 2403 | %read mask image |
| | 2404 | [MaskField,tild,errormsg] = read_field(MaskName,'image'); |
| | 2405 | if ~isempty(errormsg) |
| | 2406 | return |
| | 2407 | end |
| | 2408 | npxy=size(MaskField.A); |
| | 2409 | if length(npxy)>2 |
| | 2410 | errormsg=[MaskName ' is not a grey scale image']; |
| | 2411 | return |
| | 2412 | elseif ~isa(MaskField.A,'uint8') |
| | 2413 | errormsg=[MaskName ' is not a 8 bit grey level image']; |
| | 2414 | return |
| | 2415 | end |
| | 2416 | MaskField.ZIndex=MaskIndex; |
| | 2417 | %px to phys or other transform on field |
| | 2418 | menu_transform=get(handles.TransformName,'String'); |
| | 2419 | choice_value=get(handles.TransformName,'Value'); |
| | 2420 | transform_name=menu_transform{choice_value};%name of the transform fct given by the menu 'transform_fct' |
| | 2421 | transform=get(handles.TransformPath,'UserData'); |
| | 2422 | if ~isequal(transform_name,'') && ~isequal(transform_name,'px') |
| | 2423 | if isfield(UvData,'XmlData') && isfield(UvData.XmlData{1},'GeometryCalib')%use geometry calib recorded from the ImaDoc xml file as first priority |
| | 2424 | Calib=UvData.XmlData{1}.GeometryCalib; |
| | 2425 | MaskField=transform(MaskField,UvData.XmlData{1}); |
| | 2426 | end |
| | 2427 | end |
| | 2428 | flagmask=MaskField.A < 200; |
| | 2429 | |
| | 2430 | %make brown color image |
| | 2431 | imflag(:,:,1)=0.9*flagmask; |
| | 2432 | imflag(:,:,2)=0.7*flagmask; |
| | 2433 | imflag(:,:,3)=zeros(size(flagmask)); |
| | 2434 | |
| | 2435 | %update mask image |
| | 2436 | hmask=[]; %default |
| | 2437 | if isfield(Mask,'maskhandle')&& ishandle(Mask.maskhandle) |
| | 2438 | hmask=Mask.maskhandle; |
| | 2439 | end |
| | 2440 | if ~isempty(hmask) |
| | 2441 | set(hmask,'CData',imflag) |
| | 2442 | set(hmask,'AlphaData',flagmask*0.6) |
| | 2443 | set(hmask,'XData',MaskField.Coord_x); |
| | 2444 | set(hmask,'YData',MaskField.Coord_y); |
| | 2445 | % uistack(hmask,'top') |
| | 2446 | else |
| | 2447 | axes(handles.PlotAxes) |
| | 2448 | hold on |
| | 2449 | Mask.maskhandle=image(MaskField.Coord_x,MaskField.Coord_y,imflag,'Tag','mask','HitTest','off','AlphaData',0.6*ones(size(flagmask))); |
| | 2450 | set(handles.CheckMask,'UserData',Mask) |
| | 2451 | end |
| | 2452 | end |
| | 2453 | end |
| | 2454 | |
| | 2455 | %------------------------------------------------------------------------ |
| | 2456 | %------------------------------------------------------------------------ |
| | 2457 | % III - MAIN InputFileREFRESH FUNCTIONS : 'FRAME PLOT' |
| | 2458 | %------------------------------------------------------------------------ |
| | 2459 | |
| | 2460 | %------------------------------------------------------------------------ |
| | 2461 | % --- Executes on button press in runplus: make one step forward and call |
| | 2462 | % --- InputFileREFRESH. The step forward is along the fieldname series 1 or 2 depending on |
| | 2463 | % --- the scan_i and scan_j check box (exclusive each other) |
| | 2464 | function runplus_Callback(hObject, eventdata, handles) |
| | 2465 | %------------------------------------------------------------------------ |
| | 2466 | |
| | 2467 | set(handles.runplus,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| | 2468 | drawnow |
| | 2469 | increment=str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| | 2470 | if isnan(increment)% case of free increment: move to next available field index |
| | 2471 | increment='+'; |
| | 2472 | end |
| | 2473 | errormsg=runpm(hObject,eventdata,handles,increment); |
| | 2474 | if ~isempty(errormsg) |
| | 2475 | msgbox_uvmat('ERROR',errormsg); |
| | 2476 | end |
| | 2477 | |
| | 2478 | %------------------------------------------------------------------------ |
| | 2479 | % --- Executes on button press in runmin: make one step backward and call |
| | 2480 | % --- InputFileREFRESH. The step backward is along the fieldname series 1 or 2 depending on |
| | 2481 | % --- the scan_i and scan_j check box (exclusive each other) |
| | 2482 | function runmin_Callback(hObject, eventdata, handles) |
| | 2483 | %------------------------------------------------------------------------ |
| | 2484 | |
| | 2485 | set(handles.runmin,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| | 2486 | drawnow |
| | 2487 | increment=-str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| | 2488 | if isnan(increment)% case of free increment: move to previous available field index |
| | 2489 | increment='-'; |
| | 2490 | end |
| | 2491 | errormsg=runpm(hObject,eventdata,handles,increment); |
| | 2492 | if ~isempty(errormsg) |
| | 2493 | msgbox_uvmat('ERROR',errormsg); |
| | 2494 | end |
| | 2495 | |
| | 2496 | %------------------------------------------------------------------------ |
| | 2497 | % -- Executes on button press in Movie: make a series of +> steps |
| | 2498 | function Movie_Callback(hObject, eventdata, handles) |
| | 2499 | %------------------------------------------------------------------------ |
| | 2500 | |
| | 2501 | set(handles.Movie,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| | 2502 | drawnow |
| | 2503 | increment=str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| | 2504 | if isnan(increment)% case of free increment: move to next available field index |
| | 2505 | increment='+'; |
| | 2506 | end |
| | 2507 | set(handles.STOP,'Visible','on') |
| | 2508 | set(handles.speed,'Visible','on') |
| | 2509 | set(handles.speed_txt,'Visible','on') |
| | 2510 | set(handles.Movie,'BusyAction','queue') |
| | 2511 | UvData=get(handles.uvmat,'UserData'); |
| | 2512 | |
| | 2513 | while get(handles.Movie,'Value')==1 && get(handles.speed,'Value')~=0 && isequal(get(handles.Movie,'BusyAction'),'queue') % enable STOP command |
| | 2514 | errormsg=runpm(hObject,eventdata,handles,increment); |
| | 2515 | if ~isempty(errormsg) |
| | 2516 | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2517 | return |
| | 2518 | end |
| | 2519 | pause(1.02-get(handles.speed,'Value'))% wait for next image |
| | 2520 | end |
| | 2521 | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj), |
| | 2522 | UvData.aviobj=close(UvData.aviobj); |
| | 2523 | set(handles.uvmat,'UserData',UvData); |
| | 2524 | end |
| | 2525 | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2526 | |
| | 2527 | %------------------------------------------------------------------------ |
| | 2528 | % -- Executes on button press in Movie: make a series of <- steps |
| | 2529 | function MovieBackward_Callback(hObject, eventdata, handles) |
| | 2530 | %------------------------------------------------------------------------ |
| | 2531 | set(handles.MovieBackward,'BackgroundColor',[1 1 0])%paint the command button in yellow |
| | 2532 | drawnow |
| | 2533 | increment=-str2double(get(handles.num_IndexIncrement,'String')); %get the field increment d |
| | 2534 | if isnan(increment)% case of free increment: move to next available field index |
| | 2535 | increment='-'; |
| | 2536 | end |
| | 2537 | set(handles.STOP,'Visible','on') |
| | 2538 | set(handles.speed,'Visible','on') |
| | 2539 | set(handles.speed_txt,'Visible','on') |
| | 2540 | set(handles.MovieBackward,'BusyAction','queue') |
| | 2541 | UvData=get(handles.uvmat,'UserData'); |
| | 2542 | |
| | 2543 | while get(handles.MovieBackward,'Value')==1 && get(handles.speed,'Value')~=0 && isequal(get(handles.MovieBackward,'BusyAction'),'queue') % enable STOP command |
| | 2544 | errormsg=runpm(hObject,eventdata,handles,increment); |
| | 2545 | if ~isempty(errormsg) |
| | 2546 | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2547 | return |
| | 2548 | end |
| | 2549 | pause(1.02-get(handles.speed,'Value'))% wait for next image |
| | 2550 | end |
| | 2551 | if isfield(UvData,'aviobj') && ~isempty( UvData.aviobj), |
| | 2552 | UvData.aviobj=close(UvData.aviobj); |
| | 2553 | set(handles.uvmat,'UserData',UvData); |
| | 2554 | end |
| | 2555 | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2556 | |
| | 2557 | %------------------------------------------------------------------------ |
| | 2558 | function STOP_Callback(hObject, eventdata, handles) |
| | 2559 | %------------------------------------------------------------------------ |
| | 2560 | set(handles.movie_pair,'BusyAction','Cancel') |
| | 2561 | set(handles.movie_pair,'value',0) |
| | 2562 | set(handles.Movie,'BusyAction','Cancel') |
| | 2563 | set(handles.MovieBackward,'BusyAction','Cancel') |
| | 2564 | set(handles.MenuExportMovie,'BusyAction','Cancel') |
| | 2565 | %set(handles.movie_pair,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2566 | set(handles.Movie,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2567 | set(handles.MovieBackward,'BackgroundColor',[1 0 0])%paint the command buttonback to red |
| | 2568 | |
| | 2569 | %------------------------------------------------------------------------ |
| | 2570 | % --- function activated by runplus and run minus |
| | 2571 | function errormsg=runpm(hObject,eventdata,handles,increment) |
| | 2572 | %------------------------------------------------------------------------ |
| | 2573 | errormsg='';%default |
| | 2574 | %% check for movie pair status |
| | 2575 | movie_status=get(handles.movie_pair,'Value'); |
| | 2576 | if movie_status |
| | 2577 | STOP_Callback(hObject, eventdata, handles)%interrupt movie pair if active |
| | 2578 | end |
| | 2579 | |
| | 2580 | %% read the current input file name(s) and field indices |
| | 2581 | InputFile=read_GUI(handles.InputFile); |
| | 2582 | InputFile.RootFile=regexprep(InputFile.RootFile,'^[\\/]|[\\/]$','');%suppress possible / or \ separator at the beginning or the end of the string |
| | 2583 | InputFile.SubDir=regexprep(InputFile.SubDir,'^[\\/]|[\\/]$','');%suppress possible / or \ separator at the beginning or the end of the string |
| | 2584 | FileExt=InputFile.FileExt; |
| | 2585 | NomType=InputFile.NomType; |
| | 2586 | [tild,tild,tild,i1,i2,j1,j2]=fileparts_uvmat(InputFile.FileIndex);% check back the indices used |
| | 2587 | if isempty(i1) |
| | 2588 | i1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
| | 2589 | elseif isempty(j1) && strcmp(get(handles.j1,'Visible'),'on') |
| | 2590 | j1=str2num(get(handles.j1,'String'));%case of indexed movie |
| | 2591 | end |
| | 2592 | if movie_status% we read the second index from the edit box |
| | 2593 | i2=str2num(get(handles.i2,'String'));%read the field indices (for movie, it is not given by the file name) |
| | 2594 | if strcmp(get(handles.j2,'Visible'),'on') |
| | 2595 | j2=str2num(get(handles.j2,'String'));% |
| | 2596 | end |
| | 2597 | end |
| | 2598 | sub_value= get(handles.SubField,'Value'); |
| | 2599 | if sub_value % a second input file has been entered |
| | 2600 | [InputFile.RootPath_1,InputFile.SubDir_1,InputFile.RootFile_1,InputFile.FileIndex_1,InputFile.FileExt_1,InputFile.NomType_1]=read_file_boxes_1(handles); |
| | 2601 | [tild,tild,tild,i1_1,i2_1,j1_1,j2_1]=fileparts_uvmat(InputFile.FileIndex_1);% the indices for the second series taken from FileIndex_1 |
| | 2602 | if isempty(i1_1) |
| | 2603 | i1_1=str2num(get(handles.i1,'String'));%read the field indices (for movie, it is not given by the file name) |
| | 2604 | elseif isempty(j1_1) && strcmp(get(handles.j1,'Visible'),'on') |
| | 2605 | j1_1=str2num(get(handles.j1,'String'));%case of indexed movie |
| | 2606 | end |
| | 2607 | else |
| | 2608 | filename_1=[]; |
| | 2609 | end |
| | 2610 | |
| | 2611 | %% increment (or decrement) the field indices and update the input filename(s) |
| | 2612 | if ~isnumeric(increment)% undefined increment value |
| | 2613 | set(handles.CheckFixPair,'Value',0) |
| | 2614 | end |
| | 2615 | CheckFixPair=get(handles.CheckFixPair,'Value')||(isempty(i2)&&isempty(j2)); |
| | 2616 | |
| | 2617 | % the pair i1-i2 or j1-j2 is imposed (check box CheckFixPair selected) |
| | 2618 | if CheckFixPair && isnumeric(increment) |
| | 2619 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| | 2620 | i1=i1+increment; |
| | 2621 | i2=i2+increment; |
| | 2622 | if sub_value |
| | 2623 | i1_1=i1_1+increment; |
| | 2624 | i2_1=i2_1+increment; |
| | 2625 | end |
| | 2626 | else % case of scanning along index j (burst numbers) |
| | 2627 | j1=j1+increment; |
| | 2628 | j2=j2+increment; |
| | 2629 | if sub_value |
| | 2630 | j1_1=j1_1+increment; |
| | 2631 | j2_1=j2_1+increment; |
| | 2632 | end |
| | 2633 | end |
| | 2634 | |
| | 2635 | % the pair i1-i2 or j1-j2 is free (check box CheckFixPair not selected): the list of existing indices recorded in UvData is used |
| | 2636 | else |
| | 2637 | UvData=get(handles.uvmat,'UserData'); |
| | 2638 | ref_i=i1; |
| | 2639 | if ~isempty(i2) |
| | 2640 | ref_i=floor((i1+i2)/2);% current reference index i |
| | 2641 | end |
| | 2642 | ref_j=1; |
| | 2643 | if ~isempty(j1) |
| | 2644 | ref_j=j1; |
| | 2645 | if ~isempty(j2) |
| | 2646 | ref_j=floor((j1+j2)/2);% current reference index j |
| | 2647 | end |
| | 2648 | end |
| | 2649 | if isnumeric(increment) |
| | 2650 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| | 2651 | ref_i=ref_i+increment;% increment the current reference index i |
| | 2652 | else % case of scanning along index j (burst numbers) |
| | 2653 | ref_j=ref_j+increment;% increment the current reference index j if scan_j option is used |
| | 2654 | end |
| | 2655 | else % free increment |
| | 2656 | % runaction=get(gcbo,'tag'); |
| | 2657 | if strcmp(increment,'+')% if runplus or movie is activated |
| | 2658 | step=1; |
| | 2659 | else |
| | 2660 | step=-1; |
| | 2661 | end |
| | 2662 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| | 2663 | ref_i=ref_i+step; |
| | 2664 | while ref_i>=0 && size(UvData.i1_series{1},3)>=ref_i+1 && UvData.i1_series{1}(1,ref_j+1,ref_i+1)==0 |
| | 2665 | ref_i=ref_i+step; |
| | 2666 | end |
| | 2667 | else % case of scanning along index j (burst numbers) |
| | 2668 | ref_j=ref_j+step; |
| | 2669 | while ref_j>=0 && size(UvData.i1_series{1},2)>=ref_j+1 && UvData.i1_series{1}(1,ref_j+1,ref_i+1)==0 |
| | 2670 | ref_j=ref_j+step; |
| | 2671 | end |
| | 2672 | end |
| | 2673 | end |
| | 2674 | if ref_i<0 |
| | 2675 | errormsg='minimum i index reached'; |
| | 2676 | elseif ref_j<0 |
| | 2677 | errormsg='minimum j index reached'; |
| | 2678 | elseif ref_i+1>size(UvData.i1_series{1},3) |
| | 2679 | errormsg='maximum i index reached (reload the input file to update the index bound)'; |
| | 2680 | elseif ref_j+1>size(UvData.i1_series{1},2) |
| | 2681 | errormsg='maximum j index reached (reload the input file to update the index bound)'; |
| | 2682 | end |
| | 2683 | if ~isempty(errormsg),return,end |
| | 2684 | siz=size(UvData.i1_series{1}); |
| | 2685 | ref_indices=ref_i*siz(1)*siz(2)+ref_j*siz(1)+1:ref_i*siz(1)*siz(2)+(ref_j+1)*siz(1); |
| | 2686 | i1_subseries=UvData.i1_series{1}(ref_indices); |
| | 2687 | ref_indices=ref_indices(i1_subseries>0); |
| | 2688 | if isempty(ref_indices)% case of pairs (free index i) |
| | 2689 | ref_indices=ref_i*siz(1)*siz(2)+1:(ref_i+1)*siz(1)*siz(2); |
| | 2690 | i1_subseries=UvData.i1_series{1}(ref_indices); |
| | 2691 | ref_indices=ref_indices(i1_subseries>0); |
| | 2692 | end |
| | 2693 | if isempty(ref_indices),errormsg='no next frame: set num_IndexIncrement =''*'' to reach the next existing file';return |
| | 2694 | end |
| | 2695 | i1=UvData.i1_series{1}(ref_indices(end)); |
| | 2696 | if ~isempty(UvData.i2_series{1}) |
| | 2697 | i2=UvData.i2_series{1}(ref_indices(end)); |
| | 2698 | end |
| | 2699 | if ~isempty(UvData.j1_series{1}) |
| | 2700 | j1=UvData.j1_series{1}(ref_indices(end)); |
| | 2701 | end |
| | 2702 | if ~isempty(UvData.j2_series{1}) |
| | 2703 | j2=UvData.j2_series{1}(ref_indices(end)); |
| | 2704 | end |
| | 2705 | |
| | 2706 | % case of a second file series |
| | 2707 | if sub_value |
| | 2708 | ref_i_1=i1_1; |
| | 2709 | if ~isempty(i2_1) |
| | 2710 | ref_i_1=floor((i1_1+i2_1)/2);% current reference index i |
| | 2711 | end |
| | 2712 | ref_j_1=1; |
| | 2713 | if ~isempty(j1_1) |
| | 2714 | ref_j_1=j1_1; |
| | 2715 | if ~isempty(j2_1) |
| | 2716 | ref_j_1=floor((j1_1+j2_1)/2);% current reference index j |
| | 2717 | end |
| | 2718 | end |
| | 2719 | if isnumeric(increment) |
| | 2720 | if get(handles.scan_i,'Value')==1% case of scanning along index i |
| | 2721 | ref_i_1=ref_i_1+increment;% increment the current reference index i |
| | 2722 | else % case of scanning along index j (burst numbers) |
| | 2723 | ref_j_1=ref_j_1+increment;% increment the current reference index j if scan_j option is used |
| | 2724 | end |
| | 2725 | else % free increment, synchronise the ref indices with the first series |
| | 2726 | ref_i_1=ref_i; |
| | 2727 | ref_j_1=ref_j; |
| | 2728 | end |
| | 2729 | if numel(UvData.i1_series)==1 |
| | 2730 | UvData.i1_series{2}=UvData.i1_series{1}; |
| | 2731 | UvData.j1_series{2}=UvData.j1_series{1}; |
| | 2732 | UvData.i2_series{2}=UvData.i2_series{1}; |
| | 2733 | UvData.j2_series{2}=UvData.j2_series{1}; |
| | 2734 | end |
| | 2735 | if ref_i_1<0 |
| | 2736 | errormsg='minimum i index reached'; |
| | 2737 | elseif ref_j_1<0 |
| | 2738 | errormsg='minimum j index reached'; |
| | 2739 | elseif ref_i_1+1>size(UvData.i1_series{2},3) |
| | 2740 | errormsg='maximum i index reached for the second series (reload the input file to update the index bound)'; |
| | 2741 | elseif ref_j_1+1>size(UvData.i1_series{2},2) |
| | 2742 | errormsg='maximum j index reached for the second series(reload the input file to update the index bound)'; |
| | 2743 | end |
| | 2744 | if ~isempty(errormsg),return,end |
| | 2745 | siz=size(UvData.i1_series{2}); |
| | 2746 | ref_indices=ref_i_1*siz(1)*siz(2)+ref_j_1*siz(1)+1:ref_i_1*siz(1)*siz(2)+(ref_j_1+1)*siz(1); |
| | 2747 | i1_subseries=UvData.i1_series{2}(ref_indices); |
| | 2748 | ref_indices=ref_indices(i1_subseries>0); |
| | 2749 | if isempty(ref_indices)% case of pairs (free index i) |
| | 2750 | ref_indices=ref_i_1*siz(1)*siz(2)+1:(ref_i_1+1)*siz(1)*siz(2); |
| | 2751 | i1_subseries=UvData.i1_series{2}(ref_indices); |
| | 2752 | ref_indices=ref_indices(i1_subseries>0); |
| | 2753 | end |
| | 2754 | i1_1=UvData.i1_series{2}(ref_indices(end)); |
| | 2755 | if ~isempty(UvData.i2_series{2}) |
| | 2756 | i2_1=UvData.i2_series{2}(ref_indices(end)); |
| | 2757 | end |
| | 2758 | if ~isempty(UvData.j1_series{2}) |
| | 2759 | j1_1=UvData.j1_series{2}(ref_indices(end)); |
| | 2760 | end |
| | 2761 | if ~isempty(UvData.j2_series{2}) |
| | 2762 | j2_1=UvData.j2_series{1}(ref_indices(end)); |
| | 2763 | end |
| | 2764 | else% the second series (if needed) is the same file as the first |
| | 2765 | i1_1=i1; |
| | 2766 | i2_1=i2; |
| | 2767 | j1_1=j1; |
| | 2768 | j2_1=j2; |
| | 2769 | end |
| | 2770 | end |
| | 2771 | filename=fullfile_uvmat(InputFile.RootPath,InputFile.SubDir,InputFile.RootFile,FileExt,NomType,i1,i2,j1,j2); |
| | 2772 | |
| | 2773 | %% refresh plots |
| | 2774 | if sub_value |
| | 2775 | filename_1=fullfile_uvmat(InputFile.RootPath_1,InputFile.SubDir_1,InputFile.RootFile_1,InputFile.FileExt_1,InputFile.NomType_1,i1_1,i2_1,j1_1,j2_1); |
| | 2776 | errormsg=refresh_field(handles,filename,filename_1,i1,i2,j1,j2,i1_1,i2_1,j1_1,j2_1); |
| | 2777 | else |
| | 2778 | errormsg=refresh_field(handles,filename,filename_1,i1,i2,j1,j2); |
| | 2779 | end |
| | 2780 | set(handles.InputFileREFRESH,'BackgroundColor',[1 0 0]) |
| | 2781 | set(handles.runplus,'BackgroundColor',[1 0 0]) |
| | 2782 | set(handles.runmin,'BackgroundColor',[1 0 0]) |
| | 2783 | |
| | 2784 | %% update the index counters if the index move is successfull |
| | 2785 | |
| | 2786 | if isempty(errormsg) |
| | 2787 | set(handles.i1,'String',num2stra(i1,NomType,1)); |
| | 2788 | if isequal(i2,i1) |
| | 2789 | set(handles.i2,'String',''); |
| | 2790 | else |
| | 2791 | set(handles.i2,'String',num2stra(i2,NomType,1)); |
| | 2792 | end |
| | 2793 | set(handles.j1,'String',num2stra(j1,NomType,2)); |
| | 2794 | if isequal(j2,j1) |
| | 2795 | set(handles.j2,'String',''); |
| | 2796 | else |
| | 2797 | set(handles.j2,'String',num2stra(j2,NomType,2)); |
| | 2798 | end |
| | 2799 | indices=fullfile_uvmat('','','','',NomType,i1,i2,j1,j2); |
| | 2800 | set(handles.FileIndex,'String',indices); |
| | 2801 | if ~isempty(filename_1) |
| | 2802 | indices_1=fullfile_uvmat('','','','',InputFile.NomType_1,i1_1,i2_1,j1_1,j2_1); |
| | 2803 | set(handles.FileIndex_1,'String',indices_1); |
| | 2804 | end |
| | 2805 | if isequal(movie_status,1) |
| | 2806 | set(handles.movie_pair,'Value',1) |
| | 2807 | movie_pair_Callback(hObject, eventdata, handles); %reactivate moviepair if it was activated |
| | 2808 | else |
| | 2809 | if isempty(i2), set(handles.i2,'String',''); end % suppress the second index display if not used |
| | 2810 | if isempty(j2), set(handles.j2,'String',''); end |
| | 2811 | end |
| | 2812 | end |
| | 2813 | |
| | 2814 | %------------------------------------------------------------------------ |
| | 2815 | % --- Executes on button pre |
