Index: trunk/src/transform_field/FFT2_detrend.m =================================================================== --- trunk/src/transform_field/FFT2_detrend.m (revision 783) +++ trunk/src/transform_field/FFT2_detrend.m (revision 810) @@ -1,12 +1,29 @@ % 'FFT2_detrend': calculate the 2D spectrum of the input scalar after removing the linear trend - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields with a single input %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: first input field structure -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=FFT2_detrend(DataIn) %------------------------------------------------------------------------ Index: trunk/src/transform_field/ima_filter.m =================================================================== --- trunk/src/transform_field/ima_filter.m (revision 783) +++ trunk/src/transform_field/ima_filter.m (revision 810) @@ -5,5 +5,5 @@ % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: input field structure @@ -11,5 +11,22 @@ %----------------------------------- -%------------------------------------- +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=ima_filter(DataIn,Param) Index: trunk/src/transform_field/ima_find_particles.m =================================================================== --- trunk/src/transform_field/ima_find_particles.m (revision 783) +++ trunk/src/transform_field/ima_find_particles.m (revision 810) @@ -1,13 +1,30 @@ % 'ima_remove_particles': removes particles from an image (keeping the local minimum) % requires the Matlab image processing toolbox - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields with a single input %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: first input field structure -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=ima_find_particles(DataIn) %------------------------------------------------------------------------ Index: trunk/src/transform_field/ima_green.m =================================================================== --- trunk/src/transform_field/ima_green.m (revision 783) +++ trunk/src/transform_field/ima_green.m (revision 810) @@ -1,12 +1,29 @@ % 'ima_green': take the gree component of a color image - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields with a single input %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: first input field structure -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=ima_green(DataIn) Index: trunk/src/transform_field/ima_levels.m =================================================================== --- trunk/src/transform_field/ima_levels.m (revision 783) +++ trunk/src/transform_field/ima_levels.m (revision 810) @@ -1,2 +1,20 @@ +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=im_levels(DataIn) %% set GUI config: no action defined Index: trunk/src/transform_field/ima_noise_rms.m =================================================================== --- trunk/src/transform_field/ima_noise_rms.m (revision 783) +++ trunk/src/transform_field/ima_noise_rms.m (revision 810) @@ -1,16 +1,31 @@ % 'ima_noise_rms': gives the variance of relative noise by difference to the % filered image in ppm (part per million) (for grey scale image) - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields with a single input and parameters %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: input field structure % Param: matlab structure whose field Param.TransformInput contains the filter parameters -%----------------------------------- -%------------------------------------- +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=ima_noise_rms(DataIn,Param) Index: trunk/src/transform_field/ima_ratio.m =================================================================== --- trunk/src/transform_field/ima_ratio.m (revision 783) +++ trunk/src/transform_field/ima_ratio.m (revision 810) @@ -17,4 +17,22 @@ % Field_1:matlab structure representing the second field +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=ima_ratio(DataIn,XmlData,DataIn_1) Index: trunk/src/transform_field/ima_remove_background.m =================================================================== --- trunk/src/transform_field/ima_remove_background.m (revision 783) +++ trunk/src/transform_field/ima_remove_background.m (revision 810) @@ -1,13 +1,30 @@ % 'ima_remove_background': removes backgound from an image (using the local minimum) % requires the Matlab image processing toolbox - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields with a single input %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: first input field structure -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=remove_background(DataIn) %------------------------------------------------------------------------ Index: trunk/src/transform_field/ima_remove_particles.m =================================================================== --- trunk/src/transform_field/ima_remove_particles.m (revision 783) +++ trunk/src/transform_field/ima_remove_particles.m (revision 810) @@ -1,13 +1,30 @@ % 'ima_remove_particles': removes particles from an image (keeping the local minimum) % requires the Matlab image processing toolbox - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields with a single input %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: first input field structure -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=ima_remove_particles(DataIn) %------------------------------------------------------------------------ Index: trunk/src/transform_field/phys.m =================================================================== --- trunk/src/transform_field/phys.m (revision 783) +++ trunk/src/transform_field/phys.m (revision 810) @@ -1,9 +1,8 @@ %'phys': transforms image (Unit='pixel') to real world (phys) coordinates using geometric calibration parameters. It acts if the input field contains the tag 'CoordTUnit' with value 'pixel' - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields %%%% % OUTPUT: % DataOut: output field structure - +% %INPUT: % DataIn: first input field structure @@ -13,5 +12,23 @@ % XmlData_1: optional second input parameter structure % .GeometryCalib: substructure of the calibration parameters -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=phys(DataIn,XmlData,DataIn_1,XmlData_1) %------------------------------------------------------------------------ Index: trunk/src/transform_field/phys_polar.m =================================================================== --- trunk/src/transform_field/phys_polar.m (revision 783) +++ trunk/src/transform_field/phys_polar.m (revision 810) @@ -1,4 +1,3 @@ %'phys_polar': transforms image (Unit='pixel') to polar (phys) coordinates using geometric calibration parameters - %------------------------------------------------------------------------ %%%% Use the general syntax for transform fields %%%% @@ -6,5 +5,5 @@ % DataOut: output field structure % .X=radius, .Y=azimuth angle, .U, .V are radial and azimuthal velocity components - +% %INPUT: % DataIn: first input field structure @@ -26,5 +25,23 @@ % Data_1: second input field (not mandatory) % XmlData_1= calibration parameters for the second field -%------------------------------------------------------------------------ + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function DataOut=phys_polar(DataIn,XmlData,DataIn_1,XmlData_1) %------------------------------------------------------------------------ Index: trunk/src/transform_field/signal_FFT.m =================================================================== --- trunk/src/transform_field/signal_FFT.m (revision 783) +++ trunk/src/transform_field/signal_FFT.m (revision 810) @@ -7,5 +7,22 @@ %INPUT: % hget_field: handles of the GUI get_field + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr % +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= function DataOut=signal_FFT(DataIn) Index: trunk/src/transform_field/signal_FFTMean.m =================================================================== --- trunk/src/transform_field/signal_FFTMean.m (revision 783) +++ trunk/src/transform_field/signal_FFTMean.m (revision 810) @@ -10,4 +10,22 @@ % DataIn: Matlab structure containing the input field from the GUI uvmat, DataIn.Action.RUN=0 to set input parameters. % Param: structure containing processing parameters, created when DataIn.Action.RUN=0 at the first use of the transform fct + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= function DataOut=signal_FFTMean(DataIn,Param) Index: trunk/src/transform_field/signal_bandpass_filter.m =================================================================== --- trunk/src/transform_field/signal_bandpass_filter.m (revision 783) +++ trunk/src/transform_field/signal_bandpass_filter.m (revision 810) @@ -7,5 +7,22 @@ %INPUT: % DataIn: Matlab structure representing the output field + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr % +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= function DataOut=signal_bandpass_filter(DataIn) Index: trunk/src/transform_field/signal_spectrum.m =================================================================== --- trunk/src/transform_field/signal_spectrum.m (revision 783) +++ trunk/src/transform_field/signal_spectrum.m (revision 810) @@ -10,4 +10,22 @@ % DataIn: Matlab structure containing the input field from the GUI uvmat, DataIn.Action.RUN=0 to set input parameters. % Param: structure containing processing parameters, created when DataIn.Action.RUN=0 at the first use of the transform fct + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= function DataOut=signal_spectrum(DataIn,Param) Index: trunk/src/transform_field/sub_field.m =================================================================== --- trunk/src/transform_field/sub_field.m (revision 783) +++ trunk/src/transform_field/sub_field.m (revision 810) @@ -16,4 +16,22 @@ % Field_1:matlab structure representing the second field +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + function SubData=sub_field(Field,XmlData,Field_1) if exist('Field_1','var')