Index: /trunk/src/series/stereo_input.m =================================================================== --- /trunk/src/series/stereo_input.m (revision 865) +++ /trunk/src/series/stereo_input.m (revision 865) @@ -0,0 +1,2975 @@ +%'stereo_input': function associated with the GUI 'stereo_input.fig' to set the input parameters for civ_series +%------------------------------------------------------------------------ +% function ParamOut = stereo_input(Param) +% +% OUPUT: +% ParamOut: Matlab structure containing the parameters set by the GUI stereo_input +% +% INPUT: +% Param: Matlab structure containing the input parameters set by the GUI + +%======================================================================= +% Copyright 2008-2014, LEGI UMR 5519 / CNRS UJF G-INP, Grenoble, France +% http://www.legi.grenoble-inp.fr +% Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr +% +% This file is part of the toolbox UVMAT. +% +% UVMAT is free software; you can redistribute it and/or modify +% it under the terms of the GNU General Public License as published +% by the Free Software Foundation; either version 2 of the license, +% or (at your option) any later version. +% +% UVMAT is distributed in the hope that it will be useful, +% but WITHOUT ANY WARRANTY; without even the implied warranty of +% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +% GNU General Public License (see LICENSE.txt) for more details. +%======================================================================= + +function varargout = stereo_input(varargin) + +gui_Singleton = 1; +gui_State = struct('gui_Name', mfilename, ... + 'gui_Singleton', gui_Singleton, ... + 'gui_OpeningFcn', @stereo_input_OpeningFcn, ... + 'gui_OutputFcn', @stereo_input_OutputFcn, ... + 'gui_LayoutFcn', [] , ... + 'gui_Callback', []); + +if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback$','once')) + gui_State.gui_Callback = str2func(varargin{1}); +end + +if nargout + [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); +else + gui_mainfcn(gui_State, varargin{:}); +end + +% End initialization code - DO NOT EDIT + +%------------------------------------------------------------------------ +% --- Executes just before stereo_input is made visible. +function stereo_input_OpeningFcn(hObject, eventdata, handles, Param) +%------------------------------------------------------------------------ +% This function has no output args, see OutputFcn. + +%% General settings +handles.output = Param; +guidata(hObject, handles); % Update handles structure +set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) +set(hObject,'WindowKeyPressFcn',{@keyboard_callback,handles})%set keyboard action function +%set(hObject,'KeyPressFcn',{@KeyPressFcn,handles})%set keyboard action function +set(handles.ref_i,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function +set(handles.ref_j,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function +%set(hObject,'WindowKeyPressFcn',{'keyboard_callback',handles})%set keyboard action function +hseries=findobj(allchild(0),'Tag','series');% find the parent GUI 'series' +hhseries=guidata(hseries); %handles of the elements in 'series' +SeriesData=get(hseries,'UserData');% info stored in the GUI series + +%% set visibility options depending on the calling function (Param.Action.ActionName): +if strcmp(Param.Action.ActionName,'civ_series')||strcmp(Param.Action.ActionName,'stereo_civ') + set(handles.num_MaxDiff,'Visible','on') + set(handles.num_MaxVel,'Visible','on') + set(handles.title_MaxVel,'Visible','on') + set(handles.title_MaxDiff,'Visible','on') + set(handles.num_Nx,'Visible','off') + set(handles.num_Ny,'Visible','off') + set(handles.title_Nx,'Visible','off') + set(handles.title_Ny,'Visible','off') + set(handles.num_CorrSmooth,'Style','popupmenu') + set(handles.num_CorrSmooth,'Value',1) + set(handles.num_CorrSmooth,'String',{'1';'2'}) + set(handles.CheckThreshold,'Visible','on') + set(handles.CheckDeformation,'Value',0)% desactivate (work in progress) + %set(handles.CheckDecimal,'Value',0)% desactivate (work in progress) +end +switch Param.Action.ActionName + case 'stereo_civ' + set(handles.ListCompareMode,'Visible','off') + set(handles.PairIndices,'Visible','off') + case 'civ_series' + set(handles.ListCompareMode,'Visible','on') + set(handles.PairIndices,'Visible','on') +end + +%% input file info +NomTypeInput=Param.InputTable{1,4}; +FileType='image';%fdefault +FileInfo=[]; +if isfield(SeriesData,'FileType')&&isfield(SeriesData,'FileInfo') + FileType=SeriesData.FileType{1};%type of the first input file series + FileInfo=SeriesData.FileInfo{1};% info on the first input file series +else + set(hhseries.REFRESH,'BackgroundColor',[1 0 1])% indicate that the file input in series needs to be refreshed +end + +%% case of netcdf file as input, read the processing stage and look for corresponding images +ind_opening=0;%default +NomTypeNc=''; +NomTypeImaA=NomTypeInput; +iview_image=1;%line # for the input images +switch FileType + case {'image','multimage','video','mmreader','netcdf'} +% NomTypeImaA=NomTypeInput; +% iview_image=1;%line # for the input images + case 'civdata' + if ~strcmp(Param.Action.ActionName,'civ_series') + msgbox_uvmat('ERROR','bad input data file: open an image or a nc file from civ_series') + return + end + NomTypeNc=NomTypeInput; + ind_opening=FileInfo.CivStage; + if isempty(regexp(NomTypeInput,'[ab|AB|-]', 'once')) + set(handles.ListCompareMode,'Value',2) %mode displacement advised if the nomencalture does not involve index pairs + else + set(handles.ListCompareMode,'Value',1) + end + [Data,tild,tild,errormsg]=nc2struct(FileInfo.FileName,[]); + if ~isempty(errormsg) + msgbox_uvmat('ERROR',['error in netcdf input file: ' errormsg]) + return + end + [PathCiv1_ImageA,Civ1_ImageA,FileExtA]=fileparts(Data.Civ1_ImageA);%look for the source image A + [PathCiv1_ImageB,Civ1_ImageB,FileExtA]=fileparts(Data.Civ1_ImageB);%look for the source image B + if isfield(Data,'Civ2_ImageA') + [PathCiv2_ImageA,Civ2_ImageA,FileExtA]=fileparts(Data.Civ2_ImageA); + [PathCiv2_ImageB,Civ2_ImageB,FileExtA]=fileparts(Data.Civ2_ImageB); + end + if size(Param.InputTable,1)==1 + series('display_file_name',hhseries,Data.Civ1_ImageA,'append');%append the image series to the input list + end + [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ1_ImageA); + [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ1_ImageB); + iview_image=2;%line # for the input images + case 'civxdata'% case of civx data, + msgbox_uvmat('ERROR','old civX convention, use the GUI civ') + return + otherwise + msgbox_uvmat('ERROR','civ_series needs images, scalar fields in netcdf format, or civ data as input') + return +end + +%% reinitialise menus +set(handles.ListPairMode,'Value',1) +set(handles.ListPairMode,'String',{''}) +set(handles.ListPairCiv1,'Value',1) +set(handles.ListPairCiv1,'String',{''}) +set(handles.ListPairCiv2,'Value',1) +set(handles.ListPairCiv2,'String',{''}) + +%% prepare the GUI with input parameters +% +set(handles.ref_i,'String',num2str(Param.IndexRange.first_i)) +if isfield(Param.IndexRange,'first_j') + set(handles.ref_j,'String',num2str(Param.IndexRange.first_j)) +end +set(handles.ConfigSource,'String','\default') + +%% set the menus of image pairs and default selection for stereo_input %%%%%%%%%%%%%%%%%%% + +%% display the min and max indices for the whole file series +if isempty(Param.IndexRange.MaxIndex_i)|| isempty(Param.IndexRange.MinIndex_i) + msgbox_uvmat('ERROR','REFRESH the input files in the GUI series') + return +end +MaxIndex_i=Param.IndexRange.MaxIndex_i(iview_image); +MinIndex_i=Param.IndexRange.MinIndex_i(iview_image); +MaxIndex_j=1;%default +MinIndex_j=1; +if isfield(Param.IndexRange,'MaxIndex_j')&&isfield(Param.IndexRange,'MinIndex_j')... + && numel(Param.IndexRange.MaxIndex_j')>=iview_image &&numel(Param.IndexRange.MinIndex_j')>=iview_image + MaxIndex_j=Param.IndexRange.MaxIndex_j(iview_image); + MinIndex_j=Param.IndexRange.MinIndex_j(iview_image); +end +%update the bounds if possible +if isfield(SeriesData,'i1_series')&&numel(SeriesData.i1_series)>=iview_image + if size(SeriesData.i1_series{iview_image},2)==2 && min(min(SeriesData.i1_series{iview_image}(:,1,:)))==0 + MinIndex_j=1;% index j set to 1 by default + MaxIndex_j=1; + MinIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:), 1 )-1;% min ref index i detected in the series (corresponding to the first non-zero value of i1_series, except for zero index) + MaxIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:),1,'last' )-1;%max ref index i detected in the series (corresponding to the last non-zero value of i1_series) + else + ref_i=squeeze(max(SeriesData.i1_series{iview_image}(1,:,:),[],2));% select ref_j index for each ref_i + ref_j=squeeze(max(SeriesData.j1_series{iview_image}(1,:,:),[],3));% select ref_i index for each ref_j + MinIndex_i=min(find(ref_i))-1; + MaxIndex_i=max(find(ref_i))-1; + MaxIndex_j=max(find(ref_j))-1; + MinIndex_j=min(find(ref_j))-1; + end +end +if ~isfield(Param.IndexRange,'first_j')||isequal(MaxIndex_j,MinIndex_j)% no possibility of j pairs + set(handles.ListPairMode,'Value',1) + set(handles.ListPairMode,'String',{'series(Di)'}) +elseif MaxIndex_i==1 && MaxIndex_j>1% simple series in j + set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)'}) + if MaxIndex_j <= 10 + set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large + end +else + set(handles.ListPairMode,'String',{'pair j1-j2';'series(Dj)';'series(Di)'})%multiple choice + if strcmp(NomTypeNc,'_1-2_1') + set(handles.ListPairMode,'Value',3)% advise 'series(Di)' + elseif MaxIndex_j <= 10 + set(handles.ListPairMode,'Value',1)% advice 'pair j1-j2' except in MaxIndex_j is large + end +end + +%% transfer the time from the GUI series, or use file index by default +time=[]; +TimeUnit='frame'; %default +CoordUnit='';%default +pxcm_search=1; +if isfield(SeriesData,'Time') && ~isempty(SeriesData.Time{1}) + time=SeriesData.Time{1}; +end +if isfield(Param.IndexRange,'TimeUnit')&&~isempty(Param.IndexRange.TimeUnit) + TimeUnit=Param.IndexRange.TimeUnit; +end +% if isfield(SeriesData,'TimeSource') +% set(handles.TimeSource,'String',SeriesData.TimeSource) +% end +if isfield(SeriesData,'GeometryCalib') + tsai=SeriesData.GeometryCalib; + if isfield(tsai,'fx_fy') + pxcm_search=max(tsai.fx_fy(1),tsai.fx_fy(2));%pixels:cm estimated for the search range + end + if isfield(tsai,'CoordUnit') + CoordUnit=tsai.CoordUnit; + end +end + +%% timing display +%show the reference image edit box if relevant (not needed for movies or in the absence of time information +if numel(time)>=2 % if there are at least two time values to define dt + if size(time,1)=3 + set(handles.CheckCiv3,'Visible','on')% make visible the switch 'iterate/repet' for Civ2. + else + set(handles.CheckCiv3,'Visible','off') + end +end + +%% introduce the stored Civ parameters if available (from previous input or ImportConfig in series) +if ~checkrefresh && isfield(Param,'ActionInput')&& strcmp(Param.ActionInput.Program,Param.Action.ActionName)% the program fits with the stored data + fill_GUI(Param.ActionInput,hObject);%fill the GUI with the parameters retrieved from the input Param + hcheckgrid=findobj(handles.civ_input,'Tag','CheckGrid'); + for ilist=1:numel(hcheckgrid) + if get(hcheckgrid(ilist),'Value')% if a grid is used, do not show Dx and Dy for an automatic grid + hparent=get(hcheckgrid(ilist),'parent');%handles of the parent panel + hchildren=get(hparent,'children'); + handle_dx=findobj(hchildren,'tag','num_Dx'); + handle_dy=findobj(hchildren,'tag','num_Dy'); + handle_title_dx=findobj(hchildren,'tag','title_Dx'); + handle_title_dy=findobj(hchildren,'tag','title_Dy'); + set(handle_dx,'Visible','off'); + set(handle_dy,'Visible','off'); + set(handle_title_dy,'Visible','off'); + set(handle_title_dx,'Visible','off'); + end + end +end + +%% set the reference indices from the input file indices +ind_opening=9; +% if ~(isfield(Param,'ActionInput') && isfield(Param.ActionInput,'ConfigSource')) +update_CivOptions(handles,ind_opening)% fill the menu of possible pairs +% % end + +%% list the possible index pairs, depending on the option set in ListPairMode +ListPairMode_Callback([], [], handles) +ListPairCiv1_Callback(hObject, eventdata, handles) + +%% set the GUI to modal: wait for OK to close +set(handles.civ_input,'WindowStyle','modal')% Make the GUI modal + +set(handles.Civ3,'Visible','on') +set(handles.Fix3,'Visible','on') +set(handles.Patch3,'Visible','on') + + +drawnow +uiwait(handles.civ_input);% wait for OK action to end the function + + +%------------------------------------------------------------------------ +% --- Outputs from this function are returned to the command line. +function varargout = stereo_input_OutputFcn(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% Get default command line output from handles structure +varargout{1}=[];% default output when civ_input is canceled (no 'OK') +if ~isempty(handles) + varargout{1} = handles.output; + delete(handles.civ_input) +end + +% --- Executes when user attempts to close get_field. +function civ_input_CloseRequestFcn(hObject, eventdata, handles) +if isequal(get(handles.get_field, 'waitstatus'), 'waiting') + % The GUI is still in UIWAIT, us UIRESUME + uiresume(handles.civ_input); +else + % The GUI is no longer waiting, just close it + delete(handles.civ_input); +end + +%------------------------------------------------------------------------ +% --- Executes on button press in SetDefaultParam. +%------------------------------------------------------------------------ +function SetDefaultParam_Callback(hObject, eventdata, handles) + +Param.ConfigSource='\default'; + +%% Civ1 parameters +Param.Civ1.CorrBoxSize=[25 25]; +Param.Civ1.SearchBoxSize=[55 55]; +Param.Civ1.SearchBoxShift=[0 0]; +Param.Civ1.CorrSmooth=1; +Param.Civ1.Dx=20; +Param.Civ1.Dy=20; +Param.Civ1.CheckGrid=0; +Param.Civ1.CheckMask=0; +Param.Civ1.CheckThreshold=0; +Param.Civ1.TestCiv1=0; + +%% Fix1 parameters +Param.Fix1.CheckFmin2=1; +Param.Fix1.CheckF3=1; +Param.Fix1.MinCorr=0.2000; + +%% Patch1 parameters +Param.Patch1.FieldSmooth=10; +Param.Patch1.MaxDiff=1.5000; +Param.Patch1.SubDomainSize=1000; +Param.Patch1.TestPatch1=0; + +%% Civ2 parameters +Param.Civ2.CorrBoxSize=[21 21]; +Param.Civ2.SearchBoxSize=[27 27]; +Param.Civ2.CorrSmooth=1; +Param.Civ2.Dx=10; +Param.Civ2.Dy=10; +Param.Civ2.CheckGrid=0; +Param.Civ2.CheckMask=0; +Param.Civ2.CheckThreshold=0; +Param.Civ2.TestCiv2=0; + +%% Fix2 parameters +Param.Fix2.CheckFmin2=1; +Param.Fix2.CheckF4=1; +Param.Fix2.CheckF3=1; +Param.Fix2.MinCorr=0.2000; + +%% Patch2 parameters +Param.Patch2.FieldSmooth=2; +Param.Patch2.MaxDiff=1.5000; +Param.Patch2.SubDomainSize=1000; +Param.Patch2.TestPatch2=0; + +fill_GUI(Param,handles.civ_input)% fill the elements of the GUI series with the input parameters + +% ----------------------------------------------------------------------- +% ----------------------------------------------------------------------- +% --- Open the help html file +function MenuHelp_Callback(hObject, eventdata, handles) +% ----------------------------------------------------------------------- +web('http://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/wiki/UvmatHelp#Civ') + +%------------------------------------------------------------------------ +% --- Executes on carriage return on the subdir checkciv1 edit window +function Civ1_ImageB_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +SubDir=get(handles.Civ1_ImageB,'String'); +menu_str=get(handles.ListSubdirCiv1,'String');% read the list of subdirectories for update +ichoice=find(strcmp(SubDir,menu_str),1); +if isempty(ichoice) + ilist=numel(menu_str); %select 'new...' in the menu +else + ilist=ichoice; +end +set(handles.ListSubdirCiv1,'Value',ilist)% select the selected subdir in the menu +if get(handles.CheckCiv1,'Value')% if Civ1 is performed + set(handles.Civ2_ImageA,'String',SubDir);% set by default civ2 directory the same as civ1 +% set(handles.ListSubdirCiv2,'Value',ilist) +else % if Civ1 data already exist + errormsg=find_netcpair_civ(handles,1); %update the list of available index pairs in the new directory + if ~isempty(errormsg) + msgbox_uvmat('ERROR',errormsg) + end +end + +%------------------------------------------------------------------------ +% --- Executes on carriage return on the SubDir checkciv1 edit window +function Civ2_ImageA_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +SubDir=get(handles.Civ1_ImageB,'String'); +menu_str=get(handles.ListSubdirCiv2,'String');% read the list of subdirectories for update +ichoice=find(strcmp(SubDir,menu_str),1); +if isempty(ichoice) + ilist=numel(menu_str); %select 'new...' in the menu +else + ilist=ichoice; +end +set(handles.ListSubdirCiv2,'Value',ilist)% select the selected subdir in the menu +%update the list of available pairs from netcdf files in the new directory +if ~get(handles.CheckCiv2,'Value') && ~get(handles.CheckCiv1,'Value') && ~get(handles.CheckFix1,'Value') && ~get(handles.CheckPatch1,'Value') + errormsg=find_netcpair_civ(handles,2); + if ~isempty(errormsg) + msgbox_uvmat('ERROR',errormsg) + end +end + +%------------------------------------------------------------------------ +% --- Executes on button press in CheckCiv1. +function CheckCiv1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Civ1,'Visible','on') +else + set(handles.Civ1,'Visible','off') +end + +%------------------------------------------------------------------------ +% --- Executes on button press in CheckFix1. +function CheckFix1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Fix1,'Visible','on') +else + set(handles.Fix1,'Visible','off') +end + +%------------------------------------------------------------------------ +% --- Executes on button press in CheckPatch1. +function CheckPatch1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Patch1,'Visible','on') +else + set(handles.Patch1,'Visible','off') +end +%------------------------------------------------------------------------ +% --- Executes on button press in CheckCiv2. +function CheckCiv2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Civ2,'Visible','on') +else + set(handles.Civ2,'Visible','off') +end +%------------------------------------------------------------------------ +% --- Executes on button press in CheckFix2. +function CheckFix2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Fix2,'Visible','on') +else + set(handles.Fix2,'Visible','off') +end +%------------------------------------------------------------------------ +% --- Executes on button press in CheckPatch2. +function CheckPatch2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +%update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Patch2,'Visible','on') +else + set(handles.Patch2,'Visible','off') +end +%------------------------------------------------------------------------ +% --- Executes on button press in CheckCiv3. +function CheckCiv3_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Civ3,'Visible','on') +else + set(handles.Civ3,'Visible','off') +end +%------------------------------------------------------------------------ +% --- Executes on button press in CheckFix3. +function CheckFix3_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +% update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Fix3,'Visible','on') +else + set(handles.Fix3,'Visible','off') +end +%------------------------------------------------------------------------ +% --- Executes on button press in CheckPatch3. +function CheckPatch3_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +%update_CivOptions(handles,0) +if get(hObject,'Value')==1 + set(handles.Patch3,'Visible','on') +else + set(handles.Patch3,'Visible','off') +end +%------------------------------------------------------------------------ + +% --- activated by any checkbox controling the selection of Civ1,Fix1,Patch1,Civ2,Fix2,Patch2 +function update_CivOptions(handles,opening) +%------------------------------------------------------------------------ +% if opening>0 +% set(handles.CheckCiv2,'UserData',opening)% store the info on the current status of the civ processing +% % end +% checkbox=zeros(1,9); +% checkbox(1)=get(handles.CheckCiv1,'Value'); +% checkbox(2)=get(handles.CheckFix1,'Value'); +% checkbox(3)=get(handles.CheckPatch1,'Value'); +% checkbox(4)=get(handles.CheckCiv2,'Value'); +% checkbox(5)=get(handles.CheckFix2,'Value'); +% checkbox(6)=get(handles.CheckPatch2,'Value'); +% checkbox(7)=get(handles.CheckCiv3,'Value'); +% checkbox(8)=get(handles.CheckFix3,'Value'); +% checkbox(9)=get(handles.CheckPatch3,'Value'); +% if opening==0 +% errormsg=find_netcpair_civ(handles,1); % select the available netcdf files +% if ~isempty(errormsg) +% msgbox_uvmat('ERROR',errormsg) +% end +% end +% if max(checkbox(4:6))>0% case of civ2 pair choice needed +% set(handles.TitlePairCiv2,'Visible','on') +% set(handles.ListPairCiv2,'Visible','on') +% if ~opening +% errormsg=find_netcpair_civ(handles,2); % select the available netcdf files +% if ~isempty(errormsg) +% msgbox_uvmat('ERROR',errormsg) +% end +% end +% else +% set(handles.ListPairCiv2,'Visible','off') +% end +% +% +% %% set the visibility of the different panels +% options={'Civ1','Fix1','Patch1','Civ2','Fix2','Patch2','Civ3','Fix3','Patch3'}; +% for ilist=1:length(options) +% % if checkbox(ilist) +% set(handles.(options{ilist}),'Visible','on') +% % else +% % set(handles.(options{ilist}),'Visible','off') +% % end +% end + +%------------------------------------------------------------------------ +% --- Executes on button press in OK: processing on local computer +function OK_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ + +ActionInput=read_GUI(handles.civ_input);% read the infos on the GUI civ_input + +%% correct input inconsistencies +if isfield(ActionInput,'Civ1') + checkeven=(mod(ActionInput.Civ1.CorrBoxSize,2)==0); + ActionInput.Civ1.CorrBoxSize(checkeven)=ActionInput.Civ1.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values + ActionInput.Civ1.SearchBoxSize=max(ActionInput.Civ1.SearchBoxSize,ActionInput.Civ1.CorrBoxSize+8);% insure that the search box size is large enough + checkeven=(mod(ActionInput.Civ1.SearchBoxSize,2)==0); + ActionInput.Civ1.SearchBoxSize(checkeven)=ActionInput.Civ1.SearchBoxSize(checkeven)+1;% set search box sizes to odd values +end +if isfield(ActionInput,'Civ2') + checkeven=(mod(ActionInput.Civ2.CorrBoxSize,2)==0); + ActionInput.Civ2.CorrBoxSize(checkeven)=ActionInput.Civ2.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values + ActionInput.Civ2.SearchBoxSize=max(ActionInput.Civ2.SearchBoxSize,ActionInput.Civ2.CorrBoxSize+4); + checkeven=(mod(ActionInput.Civ2.SearchBoxSize,2)==0); + ActionInput.Civ2.SearchBoxSize(checkeven)=ActionInput.Civ2.SearchBoxSize(checkeven)+1;% set search box sizes to odd values +end + +%% correct mask or grid name for Windows system (replace '\' by '/') +if isfield(ActionInput,'Civ1') + if isfield(ActionInput.Civ1,'Mask') + ActionInput.Civ1.Mask=regexprep(ActionInput.Civ1.Mask,'\','/'); + end + if isfield(ActionInput.Civ1,'Grid') + ActionInput.Civ1.Grid=regexprep(ActionInput.Civ1.Grid,'\','/'); + end +end +if isfield(ActionInput,'Civ2') + if isfield(ActionInput.Civ2,'Mask') + ActionInput.Civ2.Mask=regexprep(ActionInput.Civ2.Mask,'\','/'); + end + if isfield(ActionInput.Civ2,'Grid') + ActionInput.Civ2.Grid=regexprep(ActionInput.Civ2.Grid,'\','/'); + end +end + +%% exit the GUI and close it +handles.output.ActionInput=ActionInput; +guidata(hObject, handles);% Update handles structure +uiresume(handles.civ_input); + + +%------------------------------------------------------------------------ +% --- Executes on button press in ListCompareMode. +function ListCompareMode_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +ListCompareMode=get(handles.ListCompareMode,'String'); +option=ListCompareMode{get(handles.ListCompareMode,'Value')}; +hseries=findobj(allchild(0),'Tag','series'); +SeriesData=get(hseries,'UserData'); +check_nc=strcmp(SeriesData.FileType{1},'.nc'); +ImageType=SeriesData.FileType(2:end); +if check_nc + ImageType=SeriesData.FileType(2:end); +else + ImageType=SeriesData.FileType; +end +hhseries=guidata(hseries); +InputTable=get(hhseries.InputTable,'Data'); +OriginIndex='off'; +PairIndices='off'; +DoubleInputSeries='off'; +switch option + case 'PIV' + PairIndices='on';% needs to define index pairs for PIV + + case 'PIV volume' + PairIndices='on';% needs to define index pairs for PIV + set(handles.ListPairMode,'Value',1) + set(handles.ListPairMode,'String',{'series(Di)'}) + ListPairMode_Callback(hObject, eventdata, handles) + case 'displacement' + OriginIndex='on';%define a frame origin for displacement +% case 'shift' +% if numel(ImageType)==1 +% fileinput=uigetfile_uvmat('pick a second file series for synchronous shift',InputTable{check_nc+1}); +% if ~isempty(fileinput) +% series( 'display_file_name',hhseries,fileinput,'append') +% end +% +% +% end +end +set(handles.num_OriginIndex,'Visible',OriginIndex) +set(handles.OriginIndex_title,'Visible',OriginIndex) +set(handles.PairIndices,'Visible',PairIndices) +ListPairMode_Callback(hObject, eventdata, handles) + + + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Callbacks in the uipanel Pair Indices +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +% --- Executes on button press in ListPairMode. +function ListPairMode_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +compare_list=get(handles.ListCompareMode,'String'); +val=get(handles.ListCompareMode,'Value'); +compare=compare_list{val}; +if strcmp(compare,'displacement')||strcmp(compare,'shift') + mode='displacement'; +else + mode_list=get(handles.ListPairMode,'String'); + if ischar(mode_list) + mode_list={mode_list}; + end + mode_value=get(handles.ListPairMode,'Value'); + mode=mode_list{mode_value}; +end +% displ_num=[];%default +ref_i=str2double(get(handles.ref_i,'String')); +% last_i=str2num(get(handles.last_i,'String')); +CivInputData=get(handles.civ_input,'UserData'); +TimeUnit=get(handles.TimeUnit,'String'); +checkframe=strcmp(TimeUnit,'frame'); +time=CivInputData.Time; +siztime=size(CivInputData.Time); +nbfield=siztime(1)-1; +nbfield2=siztime(2)-1; +indchosen=1; %%first pair selected by default +%displ_num used to define the indices of the stereo_input pairs +% in mode 'pair j1-j2', j1 and j2 are the file indices, else the indices +% are relative to the reference indices ref_i and ref_j respectively. +if isequal(mode,'pair j1-j2')%| isequal(mode,'st_pair j1-j2') + dt=1; + displ=''; + index=0; + numlist_a=[]; + numlist_B=[]; + %get all the time intervals in bursts + displ_dt=1;%default + nbfield2=min(nbfield2,10);%limitate the number of pairs to 10x10 + for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'pair j1-j2' mode + for numod_b=(numod_a+1):nbfield2 + index=index+1; + numlist_a(index)=numod_a; + numlist_b(index)=numod_b; + if size(time,2)>1 && ~checkframe + dt(numod_a,numod_b)=CivInputData.Time(ref_i+1,numod_b+1)-CivInputData.Time(ref_i+1,numod_a+1);%first time interval dt + displ_dt(index)=dt(numod_a,numod_b); + else + displ_dt(index)=1; + end + end + end + [dtsort,indsort]=sort(displ_dt); + if ~isempty(numlist_a) + displ_num(1,:)=numlist_a(indsort); + displ_num(2,:)=numlist_b(indsort); + end + displ_num(3,:)=0; + displ_num(4,:)=0; + enable_j(handles, 'off') +elseif isequal(mode,'series(Dj)') %| isequal(mode,'st_series(Dj)') + index=1:200; + displ_num(1,index)=-floor(index/2); + displ_num(2,index)=ceil(index/2); + displ_num(3:4,index)=zeros(2,200); + enable_j(handles, 'on') +elseif isequal(mode,'series(Di)') %| isequal(mode,'st_series(Di)') +% index=1:200; +% displ_num(1:2,index)=zeros(2,200); +% displ_num(3,index)=-floor(index/2); +% displ_num(4,index)=ceil(index/2); + enable_i(handles, 'on') + if nbfield2 > 1 + enable_j(handles, 'on') + else + enable_j(handles, 'off') + end +elseif isequal(mode,'displacement')%the pairs have the same indices + displ_num(1,1)=0; + displ_num(2,1)=0; + displ_num(3,1)=0; + displ_num(4,1)=0; + if nbfield > 1 || nbfield==0 + enable_i(handles, 'on') + else + enable_j(handles, 'off') + end + if nbfield2 > 1 + enable_j(handles, 'on') + else + enable_j(handles, 'off') + end +end +%set(handles.ListPairCiv1,'UserData',displ_num); +errormsg=find_netcpair_civ( handles,1); + if ~isempty(errormsg) + msgbox_uvmat('ERROR',errormsg) + end +% find_netcpair_civ2(handles) + +function enable_i(handles, state) +set(handles.itext,'Visible',state) +% set(handles.MinIndex_i,'Visible',state) +% set(handles.last_i,'Visible',state) +% set(handles.incr_i,'Visible',state) +set(handles.MaxIndex_i,'Visible',state) +set(handles.ref_i,'Visible',state) + +function enable_j(handles, state) +set(handles.jtext,'Visible',state) +% set(handles.MinIndex_j,'Visible',state) +% set(handles.last_j,'Visible',state) +% set(handles.incr_j,'Visible',state) +set(handles.MinIndex_j,'Visible',state) +set(handles.MaxIndex_j,'Visible',state) +set(handles.ref_j,'Visible',state) +%hseries=findobj(allchild(0),'Tag','series'); +%hhseries=guidata(hseries); +%series('enable_j',hhseries,state); %file input with xml reading in uvmat, show the image in phys coordinates + + + +%------------------------------------------------------------------------ +% --- Executes on selection change in ListPairCiv1. +function ListPairCiv1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +%reproduce by default the chosen pair in the checkciv2 menu +list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs +PairString=list_pair{get(handles.ListPairCiv1,'Value')}; + +[ind1,ind2]=... + find_pair_indices(PairString); +hseries=findobj(allchild(0),'Tag','series'); +hhseries=guidata(hseries); +set(hhseries.num_first_j,'String',num2str(ind1)); +set(hhseries.num_last_j,'String',num2str(ind2)); +set(hhseries.num_incr_j,'String',num2str(ind2-ind1)); +set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))%civ2 selection the same as civ& by default + + +%------------------------------------------------------------------------ +% --- Executes on selection change in ListPairCiv2. +function ListPairCiv2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ + + +%------------------------------------------------------------------------ +function ref_i_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +mode_list=get(handles.ListPairMode,'String'); +mode_value=get(handles.ListPairMode,'Value'); +mode=mode_list{mode_value}; +errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files +if isequal(mode,'series(Di)') || ...% we do patch2 only + (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) + errormsg=find_netcpair_civ( handles,2); +end +if isempty(errormsg) + set(handles.ref_i,'BackgroundColor',[1 1 1]) + set(handles.ref_j,'BackgroundColor',[1 1 1]) +else + msgbox_uvmat('ERROR',errormsg) +end + +function ref_i_KeyPressFcn(hObject, eventdata, handles) +set(hObject,'BackgroundColor',[1 0 1]) + +% %------------------------------------------------------------------------ +% function ref_j_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% mode_list=get(handles.ListPairMode,'String'); +% mode_value=get(handles.ListPairMode,'Value'); +% mode=mode_list{mode_value}; +% errormsg=''; +% if isequal(get(handles.CheckCiv1,'Value'),0)|| isequal(mode,'series(Dj)') +% errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files +% end +% if isequal(mode,'series(Dj)') || ... +% (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) +% errormsg=find_netcpair_civ(handles,2); +% end +% if ~isempty(errormsg) +% msgbox_uvmat('ERROR',errormsg) +% end +% +% function ref_j_KeyPressFcn(hObject, eventdata, handles) +% set(handles.ref_j,'BackgroundColor',[1 0 1]) +%------------------------------------------------------------------------ +% determine the menu for checkciv1 pairs depending on existing netcdf file at the middle of +% the field series set by MinIndex_i, incr, last_i +% index=1: look for pairs for civ1 +% index=2: look for pairs for civ2 +function errormsg=find_netcpair_civ(handles,index) +%------------------------------------------------------------------------ +set(gcf,'Pointer','watch')% set the mouse pointer to 'watch' (clock) + +%% initialisation +errormsg=''; +CivInputData=get(handles.civ_input,'UserData'); +%browse=get(handles.RootPath,'UserData'); +compare_list=get(handles.ListCompareMode,'String'); +val=get(handles.ListCompareMode,'Value'); +compare=compare_list{val}; +if strcmp(compare,'displacement')||strcmp(compare,'shift') + mode='displacement'; +else + mode_list=get(handles.ListPairMode,'String'); + mode_value=get(handles.ListPairMode,'Value'); + if isempty(mode_list) + return + end + mode=mode_list{mode_value}; +end +nom_type_ima=CivInputData.NomTypeIma; + +%% determine nom_type_nc, nomenclature type of the .nc files: +%[nom_type_nc]=nomtype2pair(nom_type_ima,mode); + +%% reads .nc subdirectoy and image numbers from the interface +%SubDirImages=get(handles.Civ1_ImageA,'String'); +%TODO: determine +%subdir_civ1=[SubDirImages get(handles.Civ1_ImageB,'String')];%subdirectory subdir_civ1 for the netcdf data +%subdir_civ2=[SubDirImages get(handles.Civ2_ImageA,'String')];%subdirectory subdir_civ2 for the netcdf data +ref_i=str2double(get(handles.ref_i,'String')); +ref_j=[]; +if isequal(mode,'pair j1-j2')%|isequal(mode,'st_pair j1-j2') + ref_j=0; +elseif strcmp(get(handles.ref_j,'Visible'),'on') + ref_j=str2double(get(handles.ref_j,'String')); +end +if isempty(ref_j) + ref_j=1; +end +CivInputData=get(handles.civ_input,'UserData'); +TimeUnit=get(handles.TimeUnit,'String'); +Time=CivInputData.Time; +checkframe=strcmp(TimeUnit,'frame'); + +%% case with no Civ1 operation, netcdf files need to exist for reading +displ_pair={''}; +nbpair=200;%default +select=ones(size(1:nbpair));%flag for displayed pairs =1 for display +nbpair=200; %default + +%% determine the menu display in .ListPairCiv1 +switch mode + case 'series(Di)' + for ipair=1:nbpair + if select(ipair) + displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; + if ~checkframe + if size(Time,1)>=ref_i+1+ceil(ipair/2) && size(Time,2)>=ref_j+1&& ref_i-floor(ipair/2)>=0 && ref_j>=0 + dt=Time(ref_i+1+ceil(ipair/2),ref_j+1)-Time(ref_i+1-floor(ipair/2),ref_j+1);%Time interval dtref_j+1 + displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; + end + else + dt=ipair/1000; + displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(ipair)]; + end + else + displ_pair{ipair}='...'; %pair not displayed in the menu + end + end + case 'series(Dj)' + for ipair=1:nbpair + if select(ipair) + displ_pair{ipair}=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; + if ~checkframe + if size(Time,2)>=ref_j+1+ceil(ipair/2) && size(Time,1)>=ref_i+1 && ref_j-floor(ipair/2)>=0 && ref_i>=0 + dt=Time(ref_i+1,ref_j+1+ceil(ipair/2))-Time(ref_i+1,ref_j+1-floor(ipair/2));%Time interval dtref_j+1 + displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; + end + else + dt=ipair/1000; + displ_pair{ipair}=[displ_pair{ipair} ' :dt= ' num2str(dt*1000)]; + end + else + displ_pair{ipair}='...'; %pair not displayed in the menu + end + end + case 'pair j1-j2'%case of pairs +% MinIndex_j=CivInputData.MinIndex_j; +% MaxIndex_j=min(CivInputData.MaxIndex_j,10);%limitate the number of pairs to 10x10 + MinIndex_j=str2num(get(handles.MinIndex_j,'String')); + MaxIndex_j=str2num(get(handles.MaxIndex_j,'String')); + index_pair=0; + %get all the Time intervals in bursts + for numod_a=MinIndex_j:MaxIndex_j-1 %nbfield2 always >=2 for 'pair j1-j2' mode + for numod_b=(numod_a+1):MaxIndex_j + index_pair=index_pair+1; + displ_pair{index_pair}=['j= ' num2stra(numod_a,nom_type_ima) '-' num2stra(numod_b,nom_type_ima)]; + dt(index_pair)=numod_b-numod_a;%default dt + if size(Time,1)>ref_i && size(Time,2)>numod_b % && ~checkframe + dt(index_pair)=Time(ref_i+1,numod_b+1)-Time(ref_i+1,numod_a+1);% Time interval dt + displ_pair{index_pair}=[displ_pair{index_pair} ' :dt= ' num2str(dt(index_pair)*1000)]; + end + end + + end + [tild,indsort]=sort(dt); + displ_pair=displ_pair(indsort); + case 'displacement' + displ_pair={'Di=Dj=0'}; +end +if index==1 + set(handles.ListPairCiv1,'String',displ_pair'); +end + +%% determine the default selection in the pair menu for Civ1 +ichoice=find(select,1);% index of first selected pair +if (isempty(ichoice) || ichoice < 1); ichoice=1; end; +initial=get(handles.ListPairCiv1,'Value');%initial choice of pair +if initial>nbpair || (numel(select)>=initial && ~isequal(select(initial),1)) + set(handles.ListPairCiv1,'Value',ichoice);% first valid pair proposed by default in the menu +end + +%% determine the default selection in the pair menu for Civ2 +if strcmp(get(handles.ListPairCiv2,'Visible'),'on') + initial=get(handles.ListPairCiv2,'Value'); + if initial>length(displ_pair')%|~isequal(select(initial),1) + if ichoice <= length(displ_pair') + set(handles.ListPairCiv2,'Value',ichoice);% same pair proposed by default for civ2 + else + set(handles.ListPairCiv2,'Value',1);% same pair proposed by default for civ2 + end + end +else + set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))% initiate the choice of Civ2 as a reproduction of if civ1 +end +set(handles.ListPairCiv2,'String',displ_pair'); +set(gcf,'Pointer','arrow')% Indicate that the process is finished + + + +% %------------------------------------------------------------------------ +% % call 'view_field.fig' to display the field selected in the list of 'status' +% function open_view_field(hObject, eventdata) +% %------------------------------------------------------------------------ +% list=get(hObject,'String'); +% index=get(hObject,'Value'); +% rootroot=get(hObject,'UserData'); +% filename=list{index}; +% ind_dot=strfind(filename,'...'); +% filename=filename(1:ind_dot-1); +% filename=fullfile(rootroot,filename); +% delete(get(hObject,'parent'))%delete the display figure to stop the check process +% if exist(filename,'file')%visualise the vel field if it exists +% uvmat(filename) +% set(gcbo,'Value',1) +% end + + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Callbacks in the uipanel Reference Indices +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +function MinIndex_i_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +first_i=str2double(get(handles.MinIndex_i,'String')); +set(handles.ref_i,'String', num2str(first_i))% reference index for pair dt = first index +ref_i_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) + +% %------------------------------------------------------------------------ +% function MinIndex_j_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% first_j=str2num(get(handles.MinIndex_j,'String')); +% set(handles.ref_j,'String', num2str(first_j))% reference index for pair dt = first index +% ref_j_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Callbacks in the uipanel Civ1 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +% --- Executes on button press in SearchRange: determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 +function SearchRange_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +%determine pair numbers +if strcmp(get(handles.num_UMin,'Visible'),'off') + set(handles.u_title,'Visible','on') + set(handles.v_title,'Visible','on') + set(handles.num_UMin,'Visible','on') + set(handles.num_UMax,'Visible','on') + set(handles.num_VMin,'Visible','on') + set(handles.num_VMax,'Visible','on') + %set(handles.CoordUnit,'Visible','on') + %set(handles.TimeUnit,'Visible','on') + %set(handles.slash_title,'Visible','on') + set(handles.min_title,'Visible','on') + set(handles.max_title,'Visible','on') + set(handles.unit_title,'Visible','on') +else + get_search_range(hObject, eventdata, handles) +end + +%------------------------------------------------------------------------ +% --- determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 and shift +function get_search_range(hObject, eventdata, handles) +%------------------------------------------------------------------------ +param_civ1=read_GUI(handles.Civ1); +umin=param_civ1.UMin; +umax=param_civ1.UMax; +vmin=param_civ1.VMin; +vmax=param_civ1.VMax; +%switch min_title and max_title in case of error +if umax<=umin + umin_old=umin; + umin=umax; + umax=umin_old; + set(handles.num_UMin,'String', num2str(umin)) + set(handles.num_UMax,'String', num2str(umax)) +end +if vmax<=vmin + vmin_old=vmin; + vmin=vmax; + vmax=vmin_old; + set(handles.num_VMin,'String', num2str(vmin)) + set(handles.num_VMax,'String', num2str(vmax)) +end +if ~(isempty(umin)||isempty(umax)||isempty(vmin)||isempty(vmax)) +% list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs +% index=get(handles.ListPairCiv1,'Value'); +% pair_string=list_pair{index}; +% time=get(handles.TimeSource,'UserData'); %get the set of times +% pxcm=get(handles.SearchRange,'UserData'); +% mode_list=get(handles.ListPairMode,'String'); +% mode_value=get(handles.ListPairMode,'Value'); +% mode=mode_list{mode_value}; +% if isequal (mode, 'series(Di)' ) +% ref_i=str2double(get(handles.ref_i,'String')); +% num1=ref_i-floor(index/2);% first image numbers +% num2=ref_i+ceil(index/2); +% num_a=1; +% num_b=1; +% elseif isequal (mode, 'series(Dj)') +% num1=1; +% num2=1; +% ref_j=str2double(get(handles.ref_j,'String')); +% num_a=ref_j-floor(index/2);% first image numbers +% num_b=ref_j+ceil(index/2); +% elseif isequal(mode,'pair j1-j2') %case of bursts (png_old or png_2D) +% ref_i=str2double(get(handles.ref_i,'String')); +% num1=ref_i; +% num2=ref_i; +% r=regexp(pair_string,'(?(Di=)|(Dj=)) -*(?\d+)\|(?\d+)','names'); +% if isempty(r) +% r=regexp(pair_string,'(?\d+)(?-)(?\d+)','names'); +% end +% num_a=str2num(r.num1); +% num_b=str2num(r.num2); +% end +% dt=time(num2+1,num_b+1)-time(num1+1,num_a+1); +% ibx=str2double(get(handles.num_CorrBoxSize_1,'String')); +% iby=str2double(get(handles.num_CorrBoxSize_2,'String')); +% umin=dt*pxcm*umin; +% umax=dt*pxcm*umax; +% vmin=dt*pxcm*vmin; +% vmax=dt*pxcm*vmax; + shiftx=round((umin+umax)/2); + shifty=round((vmin+vmax)/2); + isx=(umax+2-shiftx)*2+param_civ1.CorrBoxSize(1); + isx=2*ceil(isx/2)+1; + isy=(vmax+2-shifty)*2+param_civ1.CorrBoxSize(2); + isy=2*ceil(isy/2)+1; + set(handles.num_SearchBoxShift_1,'String',num2str(shiftx)); + set(handles.num_SearchBoxShift_2,'String',num2str(shifty)); + set(handles.num_SearchBoxSize_1,'String',num2str(isx)); + set(handles.num_SearchBoxSize_2,'String',num2str(isy)); +end + +%------------------------------------------------------------------------ +% --- Executes on selection in menu CorrSmooth. +function num_CorrSmooth_Callback(hObject, eventdata, handles) +set(handles.configSource,'String','NEW') +set(handles.OK,'BackgroundColor',[1 0 1]) +%------------------------------------------------------------------------ + +% --- Executes on button press in CheckDeformation. +function CheckDeformation_Callback(hObject, eventdata, handles) +set(handles.ConfigSource,'String','NEW') +set(handles.OK,'BackgroundColor',[1 0 1]) + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Callbacks in the uipanel Fix1 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +% % --- Executes on button press in CheckMask. +% function get_mask_fix1_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% maskval=get(handles.CheckMask,'Value'); +% if isequal(maskval,0) +% set(handles.Mask,'String','') +% else +% mask_displ='no mask'; %default +% filebase=get(handles.RootPath,'String'); +% [nbslice, flag_mask]=get_mask(filebase,handles); +% if isequal(flag_mask,1) +% mask_displ=[num2str(nbslice) 'mask']; +% elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series +% filebase_a=get(handles.RootFile_1,'String'); +% [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); +% if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) +% mask_displ='no mask'; +% end +% end +% if isequal(mask_displ,'no mask') +% [FileName, PathName, filterindex] = uigetfile( ... +% {'*.png', ' (*.png)'; +% '*.png', '.png files '; ... +% '*.*', 'All Files (*.*)'}, ... +% 'Pick a mask file *.png',filebase); +% mask_displ=fullfile(PathName,FileName); +% if ~exist(mask_displ,'file') +% mask_displ='no mask'; +% end +% end +% if isequal(mask_displ,'no mask') +% set(handles.CheckMask,'Value',0) +% set(handles.CheckMask,'Value',0) +% set(handles.CheckMask,'Value',0) +% else +% %set(handles.CheckMask,'Value',1) +% set(handles.CheckMask,'Value',1) +% end +% set(handles.Mask,'String',mask_displ) +% set(handles.Mask,'String',mask_displ) +% set(handles.Mask,'String',mask_displ) +% end + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Callbacks in the uipanel Civ2 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +% --- Executes on button press in CheckMask: select box for mask option +function get_mask_civ2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +maskval=get(handles.CheckMask,'Value'); +if isequal(maskval,0) + set(handles.Mask,'String','') +else + mask_displ='no mask'; %default + filebase=get(handles.RootPath,'String'); + [nbslice, flag_mask]=get_mask(filebase,handles); + if isequal(flag_mask,1) + mask_displ=[num2str(nbslice) 'mask']; + elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series + filebase_a=get(handles.RootFile_1,'String'); + [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); + if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) + mask_displ='no mask'; + end + end + if isequal(mask_displ,'no mask') + [FileName, PathName, filterindex] = uigetfile( ... + {'*.png', ' (*.png)'; + '*.png', '.png files '; ... + '*.*', 'All Files (*.*)'}, ... + 'Pick a mask file *.png',filebase); + mask_displ=fullfile(PathName,FileName); + if ~exist(mask_displ,'file') + mask_displ='no mask'; + end + end + if isequal(mask_displ,'no mask') + set(handles.CheckMask,'Value',0) + set(handles.CheckMask,'Value',0) + else + set(handles.CheckMask,'Value',1) + end + set(handles.Mask,'String',mask_displ) +end + +% %------------------------------------------------------------------------ +% % --- Executes on button press in CheckMask. +% function get_mask_fix2_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% maskval=get(handles.CheckMask,'Value'); +% if isequal(maskval,0) +% set(handles.Mask,'String','') +% else +% mask_displ='no mask'; %default +% filebase=get(handles.RootPath,'String'); +% [nbslice, flag_mask]=get_mask(filebase,handles); +% if isequal(flag_mask,1) +% mask_displ=[num2str(nbslice) 'mask']; +% elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series +% filebase_a=get(handles.RootFile_1,'String'); +% [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); +% if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) +% mask_displ='no mask'; +% end +% end +% if isequal(mask_displ,'no mask') +% [FileName, PathName, filterindex] = uigetfile( ... +% {'*.png', ' (*.png)'; +% '*.png', '.png files '; ... +% '*.*', 'All Files (*.*)'}, ... +% 'Pick a mask file *.png',filebase); +% mask_displ=fullfile(PathName,FileName); +% if ~exist(mask_displ,'file') +% mask_displ='no mask'; +% end +% end +% if isequal(mask_displ,'no mask') +% set(handles.CheckMask,'Value',0) +% end +% set(handles.Mask,'String',mask_displ) +% end + +%------------------------------------------------------------------------ +% --- function called to look for mask files +function [nbslice, flag_mask]=get_mask(filebase,handles) +%------------------------------------------------------------------------ +%detect mask files, images with appropriate file base +%[filebase '_' xx 'mask'], xx=nbslice +%flag_mask=1 indicates detection + +flag_mask=0;%default +nbslice=1; + +% subdir=get(handles.Civ1_ImageB,'String'); +[Path,Name]=fileparts(filebase); +if ~isdir(Path) + msgbox_uvmat('ERROR','no path for input files') + return +end +% currentdir=pwd; +% cd(Path);%move in the dir of the root name filebase +maskfiles=dir(fullfile(Path,[Name '_*mask_*.png']));%look for mask files +% cd(currentdir);%come back to the current working directory +if ~isempty(maskfiles) + % msgbox_uvmat('ERROR','no mask available, to create it use Tools/Make mask in the upper menu bar of uvmat') + % else + flag_mask=1; + maskname=maskfiles(1).name;% take the first mask file in the list + [Path2,Name,ext]=fileparts(maskname); + Namedouble=double(Name); + val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters + ind_mask=findstr('mask',Name); + i=ind_mask-1; + while val(i)==0 && i>0 + i=i-1; + end + nbslice=str2double(Name(i+1:ind_mask-1)); + if ~isnan(nbslice) && Name(i)=='_' + flag_mask=1; + else + msgbox_uvmat('ERROR',['bad mask file ' Name ext ' found in ' Path2]) + return + nbslice=1; + end +end + +%------------------------------------------------------------------------ +% --- function called to look for grid files +function [nbslice, flag_grid]=get_grid(filebase,handles) +%------------------------------------------------------------------------ +flag_grid=0;%default +nbslice=1; +[Path,Name]=fileparts(filebase); +currentdir=pwd; +cd(Path);%move in the dir of the root name filebase +gridfiles=dir([Name '_*grid_*.grid']);%look for grid files +cd(currentdir);%come back to the current working directory +if ~isempty(gridfiles) + flag_grid=1; + gridname=gridfiles(1).name;% take the first grid file in the list + [Path2,Name,ext]=fileparts(gridname); + Namedouble=double(Name); + val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters + ind_grid=findstr('grid',Name); + i=ind_grid-1; + while val(i)==0 && i>0 + i=i-1; + end + nbslice=str2double(Name(i+1:ind_grid-1)); + if ~isnan(nbslice) && Name(i)=='_' + flag_grid=1; + else + msgbox_uvmat('ERROR',['bad grid file ' Name ext ' found in ' Path2]) + return + nbslice=1; + end +end + +%------------------------------------------------------------------------ +% --- transform numbers to letters +function str=num2stra(num,nom_type) +%------------------------------------------------------------------------ +if isempty(nom_type) + str=''; +elseif strcmp(nom_type(end),'a') + str=char(96+num); +elseif strcmp(nom_type(end),'A') + str=char(96+num); +elseif isempty(nom_type(2:end))%a single index + str=''; +else + str=num2str(num); +end + +% %------------------------------------------------------------------------ +% % --- Executes on button press in ListSubdirCiv1. +% function ListSubdirCiv1_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% list_subdir_civ1=get(handles.ListSubdirCiv1,'String'); +% val=get(handles.ListSubdirCiv1,'Value'); +% SubDir=list_subdir_civ1{val}; +% if strcmp(SubDir,'new...') +% if get(handles.CheckCiv1,'Value') +% SubDir='STEREO_INPUT'; %default subdirectory +% else +% msgbox_uvmat('ERROR','select CheckCiv1 to perform a new stereo_input operation') +% return +% end +% end +% set(handles.Civ1_ImageB,'String',SubDir); +% errormsg=find_netcpair_civ(handles,1); +% if ~isempty(errormsg) +% msgbox_uvmat('ERROR',errormsg) +% end +% +%------------------------------------------------------------------------ +% % --- Executes on button press in ListSubdirCiv2. +% function ListSubdirCiv2_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% list_subdir_civ2=get(handles.ListSubdirCiv2,'String'); +% val=get(handles.ListSubdirCiv2,'Value'); +% SubDir=list_subdir_civ2{val}; +% if strcmp(SubDir,'new...') +% if get(handles.CheckCiv2,'Value') +% SubDir='STEREO_INPUT'; %default subdirectory +% else +% msgbox_uvmat('ERROR','select CheckCiv2 to perform a new stereo_input operation') +% return +% end +% end +% set(handles.Civ2_ImageA,'String',SubDir); + +%------------------------------------------------------------------------ +% --- Executes on button press in CheckGrid. +function CheckGrid_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +value=get(hObject,'Value'); +hparent=get(hObject,'parent');%handles of the parent panel +hchildren=get(hparent,'children'); +handle_txtbox=findobj(hchildren,'tag','Grid');% look for the grid name box in the same panel +handle_dx=findobj(hchildren,'tag','num_Dx'); +handle_dy=findobj(hchildren,'tag','num_Dy'); +handle_title_dx=findobj(hchildren,'tag','title_Dx'); +handle_title_dy=findobj(hchildren,'tag','title_Dy'); +testgrid=0; +filegrid=''; +if value + hseries=findobj(allchild(0),'Tag','series'); + hhseries=guidata(hseries); + InputTable=get(hhseries.InputTable,'Data'); + ind_A=1;% line index of the (first) image series + if strcmp(InputTable{1,5},'.nc'); + ind_A=2; + end + filebase=InputTable{ind_A,1}; + [nbslice, flag_grid]=get_grid(filebase,handles);% look for a grid with appropriate name + if isequal(flag_grid,1) + filegrid=[num2str(nbslice) 'grid']; + testgrid=1; + else % browse for a grid + filegrid=get(hObject,'UserData');%look for previous grid name stored as UserData + if exist(filegrid,'file') + filebase=filegrid; + end + filegrid = uigetfile_uvmat('pick a grid file .grid:',filebase,'.grid'); + set(hObject,'UserData',filegrid);%store for future use + if ~isempty(filegrid) + testgrid=1; + end + set(hObject,'UserData',filegrid);%store for future use + end +end +if testgrid + set(handle_dx,'Visible','off'); + set(handle_dy,'Visible','off'); + set(handle_title_dy,'Visible','off'); + set(handle_title_dx,'Visible','off'); + set(handle_txtbox,'Visible','on') + set(handle_txtbox,'String',filegrid) +else + set(hObject,'Value',0); + set(handle_dx,'Visible','on'); + set(handle_dy,'Visible','on'); + set(handle_title_dy,'Visible','on'); + set(handle_title_dx,'Visible','on'); + set(handle_txtbox,'Visible','off') +end + +%% if hObject is on the checkciv1 frame, duplicate action for checkciv2 frame +PanelName=get(hparent,'tag'); +if strcmp(PanelName,'Civ1') + hchildren=get(handles.Civ2,'children'); + handle_checkbox=findobj(hchildren,'tag','CheckGrid'); + handle_txtbox=findobj(hchildren,'tag','Grid'); + handle_dx=findobj(hchildren,'tag','num_Dx'); + handle_dy=findobj(hchildren,'tag','num_Dy'); + handle_title_dx=findobj(hchildren,'tag','title_Dx'); + handle_title_dy=findobj(hchildren,'tag','title_Dy'); + set(handle_checkbox,'UserData',filegrid);%store for future use + if testgrid + set(handle_checkbox,'Value',1); + set(handle_dx,'Visible','off'); + set(handle_dy,'Visible','off'); + set(handle_title_dx,'Visible','off'); + set(handle_title_dy,'Visible','off'); + set(handle_txtbox,'Visible','on') + set(handle_txtbox,'String',filegrid) + end +end +set(hObject,'BackgroundColor',[1 0 1]) +set(handles.configSource,'String','NEW') +set(handles.OK,'BackgroundColor',[1 0 1]) +%------------------------------------------------------------------------ +% --- Executes on button press in CheckMask: common to all panels (civ1, Civ2..) +function CheckMask_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +value=get(hObject,'Value'); +hparent=get(hObject,'parent'); +parent_tag=get(hparent,'Tag'); +hchildren=get(hparent,'children'); +handle_txtbox=findobj(hchildren,'tag','Mask');% look for the mask name box in the same panel + +testmask=0; +if value + hseries=findobj(allchild(0),'Tag','series'); + hhseries=guidata(hseries); + InputTable=get(hhseries.InputTable,'Data'); + ind_A=1;% line index of the (first) image series + if strcmp(InputTable{1,5},'.nc'); + ind_A=2; + end + [nbslice, flag_mask]=get_mask(InputTable{ind_A,1},handles);% look for a mask with appropriate name + if isequal(flag_mask,1) + filemask=[num2str(nbslice) 'mask']; + testmask=1; + else % browse for a mask +% filemask=get(hObject,'UserData');%look for previous mask name stored as UserData +% if exist(filemask,'file') +% filebase=filemask; +% end + filemask= uigetfile_uvmat('pick a mask image file:',InputTable{ind_A,1},'image'); + set(hObject,'UserData',filemask);%store for future use + if ~isempty(filemask) + testmask=1; + end + end +end +if testmask + set(handles.Mask,'Visible','on') + set(handles.Mask,'String',filemask) + set(handles.CheckMask,'Value',1) +else + set(hObject,'Value',0); + set(handle_txtbox,'Visible','off') +end +set(handles.configSource,'String','NEW') +set(handles.configSource,'BackgroundColor',[1 0 1]) + +% %------------------------------------------------------------------------ +% % --- Executes on button press in get_gridpatch1. +% function get_gridpatch1_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% filebase=get(handles.RootPath,'String'); +% [FileName, PathName, filterindex] = uigetfile( ... +% {'*.grid', ' (*.grid)'; +% '*.grid', '.grid files '; ... +% '*.*', 'All Files (*.*)'}, ... +% 'Pick a file',filebase); +% filegrid=fullfile(PathName,FileName); +% set(handles.grid_patch1,'string',filegrid); +% set(hObject,'BackgroundColor',[1 0 1]) + +%------------------------------------------------------------------------ +% --- STEREO Interp +function cmd=RUN_STINTERP(stinterpBin,filename_A_nc,filename_B_nc,filename_nc,nx_patch,ny_patch,rho_patch,subdomain_patch,thresh_value,xmlA,xmlB) +%------------------------------------------------------------------------ +namelog=[filename_nc(1:end-3) '_stinterp.log']; +cmd=[stinterpBin ' -f1 ' filename_A_nc ' -f2 ' filename_B_nc ' -f ' filename_nc ... + ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ' -nopt ' subdomain_patch ' -c1 ' xmlA ' -c2 ' xmlB ' -xy x -Nfy 1024 > ' namelog ' 2>&1']; % redirect standard output to the log file + +% %------------------------------------------------------------------------ +% %--read images and convert them to the uint16 format used for PIV +% function A=read_image(filename,type_ima,num,movieobject) +% %------------------------------------------------------------------------ +% %num is the view number needed for an avi movie +% switch type_ima +% case 'movie' +% A=read(movieobject,num); +% case 'avi' +% mov=aviread(filename,num); +% A=frame2im(mov(1)); +% case 'multimage' +% A=imread(filename,num); +% case 'image' +% A=imread(filename); +% end +% siz=size(A); +% if length(siz)==3;%color images +% A=sum(double(A),3); +% A=uint16(A); +% end + + +%------------------------------------------------------------------------ +% --- Executes on button press in get_ref_fix1. +function get_ref_fix1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +filebase=get(handles.RootPath,'String'); +[FileName, PathName, filterindex] = uigetfile( ... + {'*.nc', ' (*.nc)'; + '*.nc', 'netcdf files '; ... + '*.*', 'All Files (*.*)'}, ... + 'Pick a file',filebase); + +fileinput=[PathName FileName]; +sizf=size(fileinput); +if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string +%[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); +[Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); +ref.filebase=fullfile(Path,File); +% ref.num_a=stra2num(str_a); +% ref.num_b=stra2num(str_b); +% ref.num1=str2double(field_count); +% ref.num2=str2double(str2); +browse=[];%initialisation +if ~isequal(ref.ext,'.nc') + msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') + return +end +set(handles.ref_fix1,'String',[fullfile(ref.subdir,File) '....nc']); +set(handles.ref_fix1,'UserData',ref) +menu_field{1}='civ1'; +Data=nc2struct(fileinput,[]); +if isfield(Data,'patch') && isequal(Data.patch,1) + menu_field{2}='filter1'; +end +if isfield(Data,'civ2') && isequal(Data.civ2,1) + menu_field{3}='civ2'; +end +if isfield(Data,'patch2') && isequal(Data.patch2,1) + menu_field{4}='filter2'; +end +set(handles.field_ref1,'String',menu_field); +set(handles.field_ref1,'Value',length(menu_field)); +set(handles.num_MinVel,'Value',2); +set(handles.num_MinVel,'String','1');%default threshold +set(handles.ref_fix1,'Enable','on') + +%------------------------------------------------------------------------ +% --- Executes on button press in get_ref_fix2. +function get_ref_fix2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +if isequal(get(handles.get_ref_fix2,'Value'),1) + filebase=get(handles.RootPath,'String'); + [FileName, PathName, filterindex] = uigetfile( ... + {'*.nc', ' (*.nc)'; + '*.nc', 'netcdf files '; ... + '*.*', 'All Files (*.*)'}, ... + 'Pick a file',filebase); + fileinput=[PathName FileName]; + sizf=size(fileinput); + if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string + %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); + [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); + ref.filebase=fullfile(Path,File); + % ref.num_a=stra2num(str_a); + % ref.num_b=stra2num(str_b); + % ref.num1=str2num(field_count); + % ref.num2=str2num(str2); + browse=[];%initialisation + if ~isequal(ref.ext,'.nc') + msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') + return + end + set(handles.ref_fix2,'String',[fullfile(ref.subdir,File) '....nc']); + set(handles.ref_fix2,'UserData',ref) + menu_field{1}='civ1'; + Data=nc2struct(fileinput,[]); + if isfield(Data,'patch') && isequal(Data.patch,1) + menu_field{2}='filter1'; + end + if isfield(Data,'civ2') && isequal(Data.civ2,1) + menu_field{3}='civ2'; + end + if isfield(Data,'patch2') && isequal(Data.patch2,1) + menu_field{4}='filter2'; + end + set(handles.field_ref2,'String',menu_field); + set(handles.field_ref2,'Value',length(menu_field)); + set(handles.num_MinVel,'Value',2); + set(handles.num_MinVel,'String','1');%default threshold + set(handles.ref_fix2,'Enable','on') + set(handles.ref_fix2,'Visible','on') + set(handles.field_ref2,'Visible','on') +else + set(handles.ref_fix2,'Visible','off') + set(handles.field_ref2,'Visible','off') +end + +%------------------------------------------------------------------------ +function ref_fix1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +set(handles.num_MinVel,'Value',1); +set(handles.field_ref1,'Value',1) +set(handles.field_ref1,'String',{' '}) +set(handles.ref_fix1,'UserData',[]); +set(handles.ref_fix1,'String',''); +set(handles.thresh_vel1,'String','0'); + +%------------------------------------------------------------------------ +function ref_fix2_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +set(handles.num_MinVel,'Value',1); +set(handles.field_ref2,'Value',1) +set(handles.field_ref2,'String',{' '}) +set(handles.ref_fix2,'UserData',[]); +set(handles.ref_fix2,'String',''); +set(handles.num_MinVel,'String','0'); + +%------------------------------------------------------------------------ +% --- TO ABANDON Executes on button press in test_stereo1. +function CheckStereo_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +hparent=get(hObject,'parent'); +parent_tag=get(hparent,'Tag'); +hchildren=get(hparent,'children'); +handle_txtbox=findobj(hchildren,'tag','txt_Mask'); +if isequal(get(hObject,'Value'),0) + set(handles.num_SubDomainSize,'Visible','on') + set(handles.num_FieldSmooth,'Visible','on') +else + set(handles.num_SubDomainSize,'Visible','off') + set(handles.num_FieldSmooth,'Visible','off') +end + +% %------------------------------------------------------------------------ +% % --- Executes on button press in CheckStereo. +% function StereoCheck_Callback(hObject, eventdata, handles) +% %------------------------------------------------------------------------ +% if isequal(get(handles.CheckStereo,'Value'),0) +% set(handles.num_subdomainsize,'Visible','on') +% set(handles.num_FieldSmooth,'Visible','on') +% else + +% set(handles.num_subdomainsize,'Visible','off') +% set(handles.num_FieldSmooth,'Visible','off') +% end + + + +%------------------------------------------------------------------------ +%----function introduced for the correlation window figure, activated by deleting this window +function closeview_field(gcbo,eventdata) +%------------------------------------------------------------------------ +hview_field=findobj(allchild(0),'tag','view_field');% look for view_field +if ~isempty(hview_field) + delete(hview_field) +end + +%------------------------------------------------------------------------ +% --- Executes on button press in CheckThreshold. +function CheckThreshold_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +huipanel=get(hObject,'parent'); +obj(1)=findobj(huipanel,'Tag','num_MinIma'); +obj(2)=findobj(huipanel,'Tag','num_MaxIma'); +obj(3)=findobj(huipanel,'Tag','title_Threshold'); +if get(hObject,'Value') + set(obj,'Visible','on') +else + set(obj,'Visible','off') +end +set(handles.configSource,'String','NEW') +set(handles.OK,'BackgroundColor',[1 0 1]) +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%%%%%%%%%%%%%% TEST functions +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +% --- Executes on button press in TestCiv1: prepare the image correlation function +% activated by mouse motion +function TestCiv1_Callback(hObject, eventdata, handles) +%------------------------------------------------------------------------ +drawnow +if get(handles.TestCiv1,'Value') + set(handles.TestCiv1,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch + %Param.Action.RUN=1; + + hseries=findobj(allchild(0),'Tag','series'); + Param=read_GUI(hseries); + Param.Action.RUN=1; + Param.ActionInput=read_GUI(handles.civ_input); + if isfield(Param.ActionInput,'Fix1') + Param.ActionInput=rmfield(Param.ActionInput,'Fix1'); + end + if isfield(Param.ActionInput,'Patch1') + Param.ActionInput=rmfield(Param.ActionInput,'Patch1'); + end + if isfield(Param.ActionInput,'Civ2')%remove options that may be selected beyond Patch1 + Param.ActionInput=rmfield(Param.ActionInput,'Civ2'); + end + if isfield(Param.ActionInput,'Fix2') + Param.ActionInput=rmfield(Param.ActionInput,'Fix2'); + end + if isfield(Param.ActionInput,'Patch2') + Param.ActionInput=rmfield(Param.ActionInput,'Patch2'); + end + if isfield(Param,'OutputSubDir') + Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series + end + Param.ActionInput.Civ1.CorrSmooth=0;% launch Civ1 with no data point (to get the image names for A and B) + [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results + if ~isempty(errormsg), return, end % rmq: error msg displayed in civ_series + + %% create image data ImageData for display + ImageData.ListVarName={'ny','nx','A'}; + ImageData.VarDimName= {'ny','nx',{'ny','nx'}}; + ImageData.A=imread(Data.Civ1_ImageA); % read the first image + if ndims(ImageData.A)==3 %case of color image + ImageData.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; + end + ImageData.ny=[size(ImageData.A,1) 1]; + ImageData.nx=[1 size(ImageData.A,2)]; + ImageData.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly + + %% create the figure view_field for image visualization + hview_field=view_field(ImageData); %view the image in the GUI view_field + set(0,'CurrentFigure',hview_field) + hhview_field=guihandles(hview_field); + set(hview_field,'CurrentAxes',hhview_field.PlotAxes) + ViewData=get(hview_field,'UserData'); + ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field + ViewData.PlotAxes.X=Data.Civ1_X'; + ViewData.PlotAxes.Y=Data.Civ1_Y'; + ViewData.PlotAxes.B=imread(Data.Civ1_ImageB);%store the second image in the UserData of the GUI view_field + set(hview_field,'UserData',ViewData)% store the info in the UserData of image view_field + + %% look for a current figure for image correlation display + corrfig=findobj(allchild(0),'tag','corrfig'); + if isempty(corrfig) + corrfig=figure; + set(corrfig,'tag','corrfig') + set(corrfig,'name','image correlation') + set(corrfig,'DeleteFcn',{@closeview_field})% + set(handles.TestCiv1,'BackgroundColor',[1 0 0]) + else + set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red + corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display + if ~isempty(corrfig) + delete(corrfig) + end + hview_field=findobj(allchild(0),'tag','view_field');% look for view_field + if ~isempty(hview_field) + delete(hview_field) + end + end +else + hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field + if ~isempty(hview_field) + delete(hview_field) + end +end + +% -------------------------------------------------------------------- +% --- Executes on button press in TestPatch1. +% -------------------------------------------------------------------- +function TestPatch1_Callback(hObject, eventdata, handles) + +if get(handles.TestPatch1,'Value')% if TestPatch1 is activated + set(handles.TestPatch1,'BackgroundColor',[1 1 0])%paint TestPatch1 button in yellow to indicate activation + set(handles.Civ1,'BackgroundColor',[1 1 0])% indicate civ1 calculation is performed + hseries=findobj(allchild(0),'Tag','series'); + Param=read_GUI(hseries); + Param.Action.RUN=1; + Param.ActionInput=read_GUI(handles.civ_input); + if isfield(Param.ActionInput,'Civ2')%remove options that may be selected beyond Patch1 + Param.ActionInput=rmfield(Param.ActionInput,'Civ2'); + end + if isfield(Param.ActionInput,'Fix2') + Param.ActionInput=rmfield(Param.ActionInput,'Fix2'); + end + if isfield(Param.ActionInput,'Patch2') + Param.ActionInput=rmfield(Param.ActionInput,'Patch2'); + end + if isfield(Param,'OutputSubDir') + Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series + end + ParamPatch1=Param.ActionInput.Patch1; %store the patch1 parameters + Param.ActionInput=rmfield(Param.ActionInput,'Patch1');% does not execute Patch + [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results + bckcolor=get(handles.civ_input,'Color'); + set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calculation is finished + + %% prepare Param for iterative Patch processing without input file reading + Param.Civ1_X=Data.Civ1_X; + Param.Civ1_Y=Data.Civ1_Y; + Param.Civ1_U=Data.Civ1_U; + Param.Civ1_V=Data.Civ1_V; + Param.Civ1_FF=Data.Civ1_FF; + Param=rmfield(Param,'InputTable');%desactivate input file reading + if isfield(Param.ActionInput,'Civ1') + Param.ActionInput=rmfield(Param.ActionInput,'Civ1');%desactivate civ1: remove civ1 input param if relevant + end + if isfield(Param.ActionInput,'Fix1') + Param.ActionInput=rmfield(Param.ActionInput,'Fix1');%desactivate fix1:remove fix1 input param if relevant + end + SmoothingParam=(ParamPatch1.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value + NbGood=numel(find(Data.Civ1_FF==0)); + NbExclude=zeros(1,7);% initialize the set of smoothing parameters + DiffVel=zeros(1,7);% initialize the rms difference between patch and civ + Param.ActionInput.Patch1=ParamPatch1;% retrieve Patch1 parameters + for irho=1:7 + Param.ActionInput.Patch1.FieldSmooth=SmoothingParam(irho); + [Data,errormsg]= civ_series(Param);%apply the processing fct + if ~isempty(errormsg) + msgbox_uvmat('ERROR',errormsg) + return + end + ind_good=find(Data.Civ1_FF==0); + Civ1_U_Diff=Data.Civ1_U(ind_good)-Data.Civ1_U_smooth(ind_good); + Civ1_V_Diff=Data.Civ1_V(ind_good)-Data.Civ1_V_smooth(ind_good); + DiffVel(irho)=sqrt(mean(Civ1_U_Diff.*Civ1_U_Diff+Civ1_V_Diff.*Civ1_V_Diff)); + NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; + end + figure(1) + hold on + semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r') + grid on + legend('rms velocity diff. Patch1-Civ1 (pixels)','proportion of excluded vectors (between 0 to 1)') + xlabel('smoothing parameter') + ylabel('smoothing effect') + set(handles.TestPatch1,'BackgroundColor',[0 1 0]) +else + corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display + if ~isempty(corrfig) + delete(corrfig) + end + hview_field=findobj(allchild(0),'tag','view_field');% look for view_field + if ~isempty(hview_field) + delete(hview_field) + end +end + +%------------------------------------------------------------------------ +% --- Executes on button press in TestCiv2. +%------------------------------------------------------------------------ +function TestCiv2_Callback(hObject, eventdata, handles) +drawnow +if get(handles.TestCiv2,'Value') + set(handles.TestCiv2,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch + hseries=findobj(allchild(0),'Tag','series'); + Param=read_GUI(hseries); + Param.Action.RUN=1; + Param.ActionInput=read_GUI(handles.civ_input); + if isfield(Param,'OutputSubDir') + Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series + end + Param.ActionInput.Civ2.CorrSmooth=0;% launch Civ2 with no data point (to get the image names for A and B) + set(handles.Civ1,'BackgroundColor',[1 1 0]) + set(handles.Fix1,'BackgroundColor',[1 1 0]) + set(handles.Patch1,'BackgroundColor',[1 1 0]) + [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results + + %% create image data ImageData for display + ImageData.ListVarName={'ny','nx','A'}; + ImageData.VarDimName= {'ny','nx',{'ny','nx'}}; + ImageData.A=imread(Data.Civ2_ImageA); % read the first image + if ndims(ImageData.A)==3 %case of color image + ImageData.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; + end + ImageData.ny=[size(ImageData.A,1) 1]; + ImageData.nx=[1 size(ImageData.A,2)]; + ImageData.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly + + %% create the figure view_field for image visualization + hview_field=view_field(ImageData); %view the image in the GUI view_field + set(0,'CurrentFigure',hview_field) + % plot the boundaries of the subdomains used for patch + for isub=1:size(Data.Civ1_SubRange,3); + pos_x=Data.Civ1_SubRange(1,1,isub); + pos_y=Data.Civ1_SubRange(2,1,isub); + width=Data.Civ1_SubRange(1,2,isub)-Data.Civ1_SubRange(1,1,isub); + height=Data.Civ1_SubRange(2,2,isub)-Data.Civ1_SubRange(2,1,isub); + rectangle('Position',[pos_x pos_y width height],'EdgeColor',[0 0 1]) + end + hhview_field=guihandles(hview_field);% + set(hview_field,'CurrentAxes',hhview_field.PlotAxes) + ViewData=get(hview_field,'UserData'); % get the currently plotted field (the image A) + % store info in the UserData of view-field + ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field + ViewData.PlotAxes.B=imread(Data.Civ2_ImageB);%store the second image in the UserData of the GUI view_field + ViewData.PlotAxes.X=Data.Civ2_X'; + ViewData.PlotAxes.Y=Data.Civ2_Y'; + ViewData.PlotAxes.ShiftX=Data.Civ2_U';% shift at each point (from patch1) estimated by the preliminary run of civ2 + ViewData.PlotAxes.ShiftY=Data.Civ2_V'; + ViewData.PlotAxes.Civ1_SubRange=Data.Civ1_SubRange; + ViewData.PlotAxes.Civ1_NbCentres=Data.Civ1_NbCentres; + ViewData.PlotAxes.Civ1_Coord_tps=Data.Civ1_Coord_tps; + ViewData.PlotAxes.Civ1_U_tps=Data.Civ1_U_tps; + ViewData.PlotAxes.Civ1_V_tps=Data.Civ1_V_tps; + ViewData.PlotAxes.Civ1_Dt=Data.Civ1_Dt; + ViewData.PlotAxes.Civ2_Dt=Data.Civ2_Dt; + set(hview_field,'UserData',ViewData)% store the info in the UserData of image view_field + bckcolor=get(handles.civ_input,'Color'); + set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calmculation is finished + set(handles.Fix1,'BackgroundColor',bckcolor) + set(handles.Patch1,'BackgroundColor',bckcolor) + drawnow + + %% look for a current figure for image correlation display + corrfig=findobj(allchild(0),'tag','corrfig'); + if isempty(corrfig) + corrfig=figure; + set(corrfig,'tag','corrfig') + set(corrfig,'name','image correlation') + set(corrfig,'DeleteFcn',{@closeview_field})% + set(handles.TestCiv1,'BackgroundColor',[1 0 0]) + else + set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red + corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display + if ~isempty(corrfig) + delete(corrfig) + end + hview_field=findobj(allchild(0),'tag','view_field');% look for view_field + if ~isempty(hview_field) + delete(hview_field) + end + end +else + hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field + if ~isempty(hview_field) + delete(hview_field) + end +end + + +% --- Executes on button press in TestPatch2. +function TestPatch2_Callback(hObject, eventdata, handles) +if get(handles.TestPatch2,'Value')% if TestPatch2 is activated + set(handles.TestPatch2,'BackgroundColor',[1 1 0])%paint TestPatch2 button in yellow to indicate activation + set(handles.Civ1,'BackgroundColor',[1 1 0])% indicate civ1 calculation is activated + set(handles.Fix1,'BackgroundColor',[1 1 0])% indicate fix1 calculation is activated + set(handles.Patch1,'BackgroundColor',[1 1 0])% indicate Patch1 calculation is activated + set(handles.Civ2,'BackgroundColor',[1 1 0])% indicate civ2 calculation is activated + set(handles.Fix2,'BackgroundColor',[1 1 0])% indicate fix2 calculation is activated + hseries=findobj(allchild(0),'Tag','series'); + Param=read_GUI(hseries); + Param.Action.RUN=1; + Param.ActionInput=read_GUI(handles.civ_input); + if isfield(Param,'OutputSubDir') + Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series + end + ParamPatch2=Param.ActionInput.Patch2; %store the patch1 parameters + Param.ActionInput=rmfield(Param.ActionInput,'Patch2');% does not execute Patch + [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results + bckcolor=get(handles.civ_input,'Color'); + set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calculation is finished + set(handles.Fix1,'BackgroundColor',bckcolor)% indicate fix1 calculation is finished + set(handles.Patch1,'BackgroundColor',bckcolor)% indicate Patch1 calculation is finished + set(handles.Civ2,'BackgroundColor',bckcolor)% indicate civ2 calculation is finished + set(handles.Fix2,'BackgroundColor',bckcolor)% indicate fix2 calculation is finished + + %% prepare Param for iterative Patch processing without input file reading + Param.Civ2_X=Data.Civ2_X; + Param.Civ2_Y=Data.Civ2_Y; + Param.Civ2_U=Data.Civ2_U; + Param.Civ2_V=Data.Civ2_V; + Param.Civ2_FF=Data.Civ2_FF; + Param=rmfield(Param,'InputTable');%desactivate input file reading + if isfield(Param.ActionInput,'Civ1') + Param.ActionInput=rmfield(Param.ActionInput,'Civ1');%desactivate civ1: remove civ1 input param if relevant + end + if isfield(Param.ActionInput,'Fix1') + Param.ActionInput=rmfield(Param.ActionInput,'Fix1');%desactivate fix1:remove fix1 input param if relevant + end + if isfield(Param.ActionInput,'Patch1') + Param.ActionInput=rmfield(Param.ActionInput,'Patch1');%desactivate fix1:remove fix1 input param if relevant + end + if isfield(Param.ActionInput,'Civ2') + Param.ActionInput=rmfield(Param.ActionInput,'Civ2');%desactivate civ2: remove civ2 input param if relevant + end + if isfield(Param.ActionInput,'Fix2') + Param.ActionInput=rmfield(Param.ActionInput,'Fix2');%desactivate fix1:remove fix1 input param if relevant + end + SmoothingParam=(ParamPatch2.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value + NbGood=numel(find(Data.Civ2_FF==0)); + NbExclude=zeros(1,7);% initialize the set of smoothing parameters + DiffVel=zeros(1,7);% initialize the rms difference between patch and civ + Param.ActionInput.Patch2=ParamPatch2;% retrieve Patch2 parameters + for irho=1:7 + Param.ActionInput.Patch2.FieldSmooth=SmoothingParam(irho); + [Data,errormsg]= civ_series(Param);%apply the processing fct + if ~isempty(errormsg) + msgbox_uvmat('ERROR',errormsg) + return + end + ind_good=find(Data.Civ2_FF==0); + Civ2_U_Diff=Data.Civ2_U(ind_good)-Data.Civ2_U_smooth(ind_good); + Civ2_V_Diff=Data.Civ2_V(ind_good)-Data.Civ2_V_smooth(ind_good); + DiffVel(irho)=sqrt(mean(Civ2_U_Diff.*Civ2_U_Diff+Civ2_V_Diff.*Civ2_V_Diff)); + NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; + end + figure(1) + hold on + semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r') + grid on + legend('rms velocity diff. Patch2-Civ2 (pixels)','proportion of excluded vectors (between 0 to 1)') + xlabel('smoothing parameter') + ylabel('smoothing effect') + set(handles.TestPatch2,'BackgroundColor',[0 1 0]) +else + corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display + if ~isempty(corrfig) + delete(corrfig) + end + hview_field=findobj(allchild(0),'tag','view_field');% look for view_field + if ~isempty(hview_field) + delete(hview_field) + end +end + + +%'nomtype2pair': creates nomencalture for index pairs knowing the image nomenclature +%--------------------------------------------------------------------- +function NomTypeNc=nomtype2pair(NomTypeIma,mode) +%--------------------------------------------------------------------- +% OUTPUT: +% NomTypeNc +%--------------------------------------------------------------------- +% INPUT: +% 'NomTypeIma': string defining the kind of nomenclature used for images + +NomTypeNc=NomTypeIma;%default +switch mode + case 'pair j1-j2' + if ~isempty(regexp(NomTypeIma,'a$')) + NomTypeNc=[NomTypeIma 'b']; + elseif ~isempty(regexp(NomTypeIma,'A$')) + NomTypeNc=[NomTypeIma 'B']; + else + r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); + if ~isempty(r) + NomTypeNc='_1_1-2'; + end + end + case 'series(Dj)' +% r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); +% if ~isempty(r) + NomTypeNc='_1_1-2'; +% end + case 'series(Di)' + r=regexp(NomTypeIma,'(?\d+)_(?\d+)$','names'); + if ~isempty(r) + NomTypeNc='_1-2_1'; + else + NomTypeNc='_1-2'; + end +end + + +%------------------------------------------------------------------------ +% --- determine the list of index pairs of processing file +function [ind1,ind2,mode]=... + find_pair_indices(str_civ,i_series,j_series,MinIndex_i,MaxIndex_i,MinIndex_j,MaxIndex_j) +%------------------------------------------------------------------------ +ind1=''; +ind2=''; +r=regexp(str_civ,'^\D(?[i|j])=( -| )(?\d+)\|(?\d+)','names'); +if ~isempty(r) + mode=['D' r.ind]; + ind1=stra2num(r.num1); + ind2=stra2num(r.num2); +else + mode='burst'; + r=regexp(str_civ,'^j= (?[a-z])-(?[a-z])','names'); + if ~isempty(r) + NomTypeNc='_1ab'; + else + r=regexp(str_civ,'^j= (?[A-Z])-(?[A-Z])','names'); + if ~isempty(r) + NomTypeNc='_1AB'; + else + r=regexp(str_civ,'^j= (?\d+)-(?\d+)','names'); + if ~isempty(r) + NomTypeNc='_1_1-2'; + end + end + end + if isempty(r) + display('wrong pair mode input option') + else + ind1=stra2num(r.num1); + ind2=stra2num(r.num2); + end +end + +%------------------------------------------------------------------------ +% --- fill stereo_input with the parameters retrieved from an input Civ file +%------------------------------------------------------------------------ +function fill_civ_input(Data,handles) + +%% Civ param +% lists of parameters to enter +ListParamNum={'CorrBoxSize','SearchBoxSize','SearchBoxShift','Dx','Dy','Dz','MinIma','MaxIma'};% list of numerical values (to transform in strings) +ListParamValue={'CorrSmooth','CheckGrid','CheckMask','CheckThreshold'}; +ListParamString={'Grid','Mask'}; +% CorrSmooth ?? +option={'Civ1','Civ2'}; +for ichoice=1:2 + if isfield(Data,[option{ichoice} '_CorrBoxSize']) + fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) + end +end + +%% Fix param +option={'Fix1','Fix2'}; +for ichoice=1:2 + if isfield(Data,[option{ichoice} '_CheckFmin2']) + ListParamNum={'MinVel','MaxVel','MinCorr'};% list of numerical values (to transform in strings) + ListParamValue={'CheckFmin2','CheckF3','CheckF4'}; + ListParamString={'ref_fix_1'}; + fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) + end +end + +%% Patch param +option={'Patch1','Patch2'}; +for ichoice=1:2 + if isfield(Data,[option{ichoice} '_FieldSmooth']) + ListParamNum={'FieldSmooth','MaxDiff','SubDomainSize'};% list of numerical values (to transform in strings) + ListParamValue={}; + ListParamString={}; + fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) + end +end +%------------------------------------------------------------------------ +% --- fill a panel of stereo_input with the parameters retrieved from an input Civ file +%------------------------------------------------------------------------ +function fill_panel(Data,handles,panel,ListParamNum,ListParamValue,ListParamString) +children=get(handles.(panel),'children');%handles of the children of the input GUI with handle 'GUI_handle' +handles_panel=[]; +for ichild=1:numel(children) + if ~isempty(get(children(ichild),'tag')) + handles_panel.(get(children(ichild),'tag'))=children(ichild); + end +end +for ilist=1:numel(ListParamNum) + ParamName=ListParamNum{ilist}; + CivParamName=[panel '_' ParamName]; + if isfield(Data,CivParamName) + for icoord=1:numel(Data.(CivParamName)) + if numel(Data.(CivParamName))>1 + Tag=['num_' ParamName '_' num2str(icoord)]; + else + Tag=['num_' ParamName]; + end + if isfield(handles_panel,Tag) + set(handles_panel.(Tag),'String',num2str(Data.(CivParamName)(icoord))) + set(handles_panel.(Tag),'Visible','on') + end + end + end +end +for ilist=1:numel(ListParamValue) + ParamName=ListParamValue{ilist}; + CivParamName=[panel '_' ParamName]; + if strcmp(ParamName,'CorrSmooth') + ParamName=['num_' ParamName]; + end + if isfield(Data,CivParamName) + if isfield(handles_panel,ParamName) + set(handles_panel.(ParamName),'Value',Data.(CivParamName)) + end + end +end +for ilist=1:numel(ListParamString) + ParamName=ListParamString{ilist}; + CivParamName=[panel '_' ParamName]; + if isfield(Data,CivParamName) + if isfield(handles_panel,ParamName) + set(handles_panel.(ParamName),'String',Data.(CivParamName)) + end + end +end + +%------------------------------------------------------------------------ +% --- Executes on button press in ImportParam. +%------------------------------------------------------------------------ +function ImportParam_Callback(hObject, eventdata, handles) +hseries=findobj(allchild(0),'Tag','series'); +hhseries=guidata(hseries); +InputTable=get(hhseries.InputTable,'Data');% read the input file(s) table in the GUI series +oldfile=InputTable{1,1}; +if isempty(oldfile) + % use a file name stored in prefdir + dir_perso=prefdir; + profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); + if exist(profil_perso,'file') + h=load (profil_perso); + if isfield(h,'RootPath') && ischar(h.RootPath) + oldfile=h.RootPath; + end + end +end +filexml=uigetfile_uvmat('pick a xml parameter file for civ',oldfile,'.xml');% get the xml file containing processing parameters +%proceed only if a file has been introduced by the browser +if ~isempty(filexml) + Param=xml2struct(filexml);% read the input xml file as a Matlab structure + + % Param.Action.RUN=0; %desactivate the input RUN=1 + if ~isfield(Param,'InputTable')||~isfield(Param,'IndexRange') + msgbox_uvmat('ERROR','invalid config file: open a file in a folder ''/0_XML''') + return + end + check_input=0; + if isfield(Param,'ActionInput') + if isfield(Param.ActionInput,'Program')&& strcmp(Param.ActionInput.Program,'civ_series') + fill_GUI(Param.ActionInput,handles.civ_input)% fill the elements of the GUI series with the input parameters + set(handles.ConfigSource,'String',filexml) + check_input=1; + update_CivOptions(handles,0) + end + end + if ~check_input + msgbox_uvmat('ERROR','invalid config file (not for civ_series') + return + end +end + + +%------------------------------------------------------------------------ +% --- Executes on key press with selection of a uicontrol +%------------------------------------------------------------------------ +function keyboard_callback(hObject,eventdata,handles) + +ListExclude={'CheckCiv1','CheckFix1','CheckPatch1','CheckCiv2','CheckFix2','CheckPatch2','ref_i'}; +if isempty(find(strcmp(get(gco,'Tag'),ListExclude),1))% if the selected uicontrol is not in the Exclude list + set(handles.ConfigSource,'String','NEW')% indicate that the configuration is new + set(handles.OK,'BackgroundColor',[1 0 1])% + drawnow +end + + + +function num_FieldSmooth_Callback(hObject, eventdata, handles) +% hObject handle to num_FieldSmooth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_FieldSmooth as text +% str2double(get(hObject,'String')) returns contents of num_FieldSmooth as a double + + +% --- Executes during object creation, after setting all properties. +function num_FieldSmooth_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_FieldSmooth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_MaxDiff_Callback(hObject, eventdata, handles) +% hObject handle to num_MaxDiff (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_MaxDiff as text +% str2double(get(hObject,'String')) returns contents of num_MaxDiff as a double + + +% --- Executes during object creation, after setting all properties. +function num_MaxDiff_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_MaxDiff (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_SubDomainSize_Callback(hObject, eventdata, handles) +% hObject handle to num_SubDomainSize (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_SubDomainSize as text +% str2double(get(hObject,'String')) returns contents of num_SubDomainSize as a double + + +% --- Executes during object creation, after setting all properties. +function num_SubDomainSize_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_SubDomainSize (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_Nx_Callback(hObject, eventdata, handles) +% hObject handle to num_Nx (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_Nx as text +% str2double(get(hObject,'String')) returns contents of num_Nx as a double + + +% --- Executes during object creation, after setting all properties. +function num_Nx_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_Nx (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_Ny_Callback(hObject, eventdata, handles) +% hObject handle to num_Ny (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_Ny as text +% str2double(get(hObject,'String')) returns contents of num_Ny as a double + + +% --- Executes during object creation, after setting all properties. +function num_Ny_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_Ny (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in TestPatch2. +function togglebutton8_Callback(hObject, eventdata, handles) +% hObject handle to TestPatch2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of TestPatch2 + + +% % --- Executes on button press in CheckPatch3. +% function CheckPatch3_Callback(hObject, eventdata, handles) +% % hObject handle to CheckPatch3 (see GCBO) +% % eventdata reserved - to be defined in a future version of MATLAB +% % handles structure with handles and user data (see GUIDATA) +% +% % Hint: get(hObject,'Value') returns toggle state of CheckPatch3 + + +% --- Executes on button press in CheckFmin2. +function CheckFmin2_Callback(hObject, eventdata, handles) +% hObject handle to CheckFmin2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckFmin2 + + +% --- Executes on button press in CheckF4. +function CheckF4_Callback(hObject, eventdata, handles) +% hObject handle to CheckF4 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckF4 + + +% --- Executes on button press in CheckF3. +function CheckF3_Callback(hObject, eventdata, handles) +% hObject handle to CheckF3 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckF3 + + +% --- Executes on button press in get_ref_fix2. +function checkbox56_Callback(hObject, eventdata, handles) +% hObject handle to get_ref_fix2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of get_ref_fix2 + + + +function edit123_Callback(hObject, eventdata, handles) +% hObject handle to ref_fix2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of ref_fix2 as text +% str2double(get(hObject,'String')) returns contents of ref_fix2 as a double + + +% --- Executes during object creation, after setting all properties. +function ref_fix2_CreateFcn(hObject, eventdata, handles) +% hObject handle to ref_fix2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_MaxVel_Callback(hObject, eventdata, handles) +% hObject handle to num_MaxVel (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_MaxVel as text +% str2double(get(hObject,'String')) returns contents of num_MaxVel as a double + + +% --- Executes during object creation, after setting all properties. +function num_MaxVel_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_MaxVel (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_MinVel_Callback(hObject, eventdata, handles) +% hObject handle to num_MinVel (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_MinVel as text +% str2double(get(hObject,'String')) returns contents of num_MinVel as a double + + +% --- Executes during object creation, after setting all properties. +function num_MinVel_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_MinVel (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_MinCorr_Callback(hObject, eventdata, handles) +% hObject handle to num_MinCorr (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_MinCorr as text +% str2double(get(hObject,'String')) returns contents of num_MinCorr as a double + + +% --- Executes during object creation, after setting all properties. +function num_MinCorr_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_MinCorr (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on selection change in field_ref2. +function field_ref2_Callback(hObject, eventdata, handles) +% hObject handle to field_ref2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: contents = cellstr(get(hObject,'String')) returns field_ref2 contents as cell array +% contents{get(hObject,'Value')} returns selected item from field_ref2 + + +% --- Executes during object creation, after setting all properties. +function field_ref2_CreateFcn(hObject, eventdata, handles) +% hObject handle to field_ref2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: popupmenu controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +% +% % --- Executes on button press in CheckFix3. +% function CheckFix3_Callback(hObject, eventdata, handles) +% % hObject handle to CheckFix3 (see GCBO) +% % eventdata reserved - to be defined in a future version of MATLAB +% % handles structure with handles and user data (see GUIDATA) +% +% % Hint: get(hObject,'Value') returns toggle state of CheckFix3 +% + + +function num_CorrBoxSize_1_Callback(hObject, eventdata, handles) +% hObject handle to num_CorrBoxSize_1 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_CorrBoxSize_1 as text +% str2double(get(hObject,'String')) returns contents of num_CorrBoxSize_1 as a double + + +% --- Executes during object creation, after setting all properties. +function num_CorrBoxSize_1_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_CorrBoxSize_1 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_CorrBoxSize_2_Callback(hObject, eventdata, handles) +% hObject handle to num_CorrBoxSize_2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_CorrBoxSize_2 as text +% str2double(get(hObject,'String')) returns contents of num_CorrBoxSize_2 as a double + + +% --- Executes during object creation, after setting all properties. +function num_CorrBoxSize_2_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_CorrBoxSize_2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function edit114_Callback(hObject, eventdata, handles) +% hObject handle to num_CorrSmooth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_CorrSmooth as text +% str2double(get(hObject,'String')) returns contents of num_CorrSmooth as a double + + +% --- Executes during object creation, after setting all properties. +function num_CorrSmooth_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_CorrSmooth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in CheckDeformation. +function checkbox48_Callback(hObject, eventdata, handles) +% hObject handle to CheckDeformation (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckDeformation + + + +function num_Dx_Callback(hObject, eventdata, handles) +% hObject handle to num_Dx (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_Dx as text +% str2double(get(hObject,'String')) returns contents of num_Dx as a double + + +% --- Executes during object creation, after setting all properties. +function num_Dx_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_Dx (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_Dy_Callback(hObject, eventdata, handles) +% hObject handle to num_Dy (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_Dy as text +% str2double(get(hObject,'String')) returns contents of num_Dy as a double + + +% --- Executes during object creation, after setting all properties. +function num_Dy_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_Dy (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in CheckGrid. +function checkbox49_Callback(hObject, eventdata, handles) +% hObject handle to CheckGrid (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckGrid + + + +function Grid_Callback(hObject, eventdata, handles) +% hObject handle to Grid (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of Grid as text +% str2double(get(hObject,'String')) returns contents of Grid as a double + + +% --- Executes during object creation, after setting all properties. +function Grid_CreateFcn(hObject, eventdata, handles) +% hObject handle to Grid (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in CheckMask. +function checkbox50_Callback(hObject, eventdata, handles) +% hObject handle to CheckMask (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckMask + + + +function Mask_Callback(hObject, eventdata, handles) +% hObject handle to Mask (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of Mask as text +% str2double(get(hObject,'String')) returns contents of Mask as a double + + +% --- Executes during object creation, after setting all properties. +function Mask_CreateFcn(hObject, eventdata, handles) +% hObject handle to Mask (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in CheckThreshold. +function checkbox51_Callback(hObject, eventdata, handles) +% hObject handle to CheckThreshold (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of CheckThreshold + + + +function num_MinIma_Callback(hObject, eventdata, handles) +% hObject handle to num_MinIma (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_MinIma as text +% str2double(get(hObject,'String')) returns contents of num_MinIma as a double + + +% --- Executes during object creation, after setting all properties. +function num_MinIma_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_MinIma (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_MaxIma_Callback(hObject, eventdata, handles) +% hObject handle to num_MaxIma (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_MaxIma as text +% str2double(get(hObject,'String')) returns contents of num_MaxIma as a double + + +% --- Executes during object creation, after setting all properties. +function num_MaxIma_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_MaxIma (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in TestCiv3. +function TestCiv3_Callback(hObject, eventdata, handles) +% hObject handle to TestCiv3 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of TestCiv3 + + + +function num_SearchBoxSize_1_Callback(hObject, eventdata, handles) +% hObject handle to num_SearchBoxSize_1 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_SearchBoxSize_1 as text +% str2double(get(hObject,'String')) returns contents of num_SearchBoxSize_1 as a double + + +% --- Executes during object creation, after setting all properties. +function num_SearchBoxSize_1_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_SearchBoxSize_1 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function num_SearchBoxSize_2_Callback(hObject, eventdata, handles) +% hObject handle to num_SearchBoxSize_2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of num_SearchBoxSize_2 as text +% str2double(get(hObject,'String')) returns contents of num_SearchBoxSize_2 as a double + + +% --- Executes during object creation, after setting all properties. +function num_SearchBoxSize_2_CreateFcn(hObject, eventdata, handles) +% hObject handle to num_SearchBoxSize_2 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes during object deletion, before destroying properties. +function num_MinCorr_DeleteFcn(hObject, eventdata, handles) +% hObject handle to num_MinCorr (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + + +% --- Executes on button press in CheckLSM. +function CheckLSM_Callback(hObject, eventdata, handles) +% hObject handle to CheckLSM (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +% if get(hObject,'Value')==1 +% set(handles.Patch3,'Visible','on') +% else +% set(handles.Patch3,'Visible','off') + +% Hint: get(hObject,'Value') returns toggle state of CheckLSM