Changeset 880 for trunk/src/series/time_series.m
- Timestamp:
- Mar 4, 2015, 12:01:38 AM (9 years ago)
- File:
-
- 1 edited
-
trunk/src/series/time_series.m (modified) (6 diffs)
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- Unmodified
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trunk/src/series/time_series.m
r875 r880 90 90 if ismember(SeriesData.ProjObject.ProjMode,{'inside','outside'}) 91 91 answer=msgbox_uvmat('INPUT_TXT','set bin size for histograms (or keep ''auto'' by default)?','auto'); 92 ParamOut.ActionInput.VarMesh=str2 double(answer);92 ParamOut.ActionInput.VarMesh=str2num(answer); 93 93 end 94 94 end … … 295 295 nbfile=0;% not used , to check 296 296 nbmissing=0; 297 VarMesh= NaN;297 VarMesh=[]; 298 298 checkhisto=0; 299 299 if isfield(Param,'ProjObject') && ismember(Param.ProjObject.ProjMode,{'inside','outside'}) 300 300 checkhisto=1; 301 if isfield(Param .ActionInput,'VarMesh')%case of histograms302 VarMesh=Param.ActionInput.VarMesh;301 if isfield(Param,'ActionInput') && isfield(Param.ActionInput,'VarMesh')%case of histograms 302 VarMesh=Param.ActionInput.VarMesh; 303 303 end 304 304 end … … 320 320 if ~isempty(errormsg) 321 321 errormsg=['time_series / read_field / ' errormsg]; 322 disp lay(errormsg)323 break 322 disp(errormsg) 323 break% exit the loop on iview 324 324 end 325 325 if ~isempty(NbSlice_calib) … … 327 327 end 328 328 end 329 if isempty(errormsg) 330 Field=Data{1}; % default input field structure 331 % coordinate transform (or other user defined transform) 332 if ~isempty(transform_fct) 333 switch nargin(transform_fct) 334 case 4 335 if length(Data)==2 336 Field=transform_fct(Data{1},XmlData{1},Data{2},XmlData{2}); 337 else 338 Field=transform_fct(Data{1},XmlData{1}); 329 if ~isempty(errormsg) 330 continue %in case of input error skip the current input field, go to next index 331 end 332 Field=Data{1}; % default input field structure 333 % coordinate transform (or other user defined transform) 334 if ~isempty(transform_fct) 335 switch nargin(transform_fct) 336 case 4 337 if length(Data)==2 338 Field=transform_fct(Data{1},XmlData{1},Data{2},XmlData{2}); 339 else 340 Field=transform_fct(Data{1},XmlData{1}); 341 end 342 case 3 343 if length(Data)==2 344 Field=transform_fct(Data{1},XmlData{1},Data{2}); 345 else 346 Field=transform_fct(Data{1},XmlData{1}); 347 end 348 case 2 349 Field=transform_fct(Data{1},XmlData{1}); 350 case 1 351 Field=transform_fct(Data{1}); 352 end 353 end 354 355 %field projection on an object 356 if Param.CheckObject 357 % calculate tps coefficients if needed 358 if isfield(Param.ProjObject,'ProjMode')&& strcmp(Param.ProjObject.ProjMode,'interp_tps') 359 Field=tps_coeff_field(Field,check_proj_tps); 360 end 361 [Field,errormsg]=proj_field(Field,Param.ProjObject,VarMesh); 362 if ~isempty(errormsg) 363 disp_uvmat('ERROR',['time_series / proj_field / ' errormsg],checkrun) 364 return 365 end 366 end 367 % nbfile=nbfile+1; 368 369 % initiate the time series at the first iteration 370 if index==1 371 % stop program if the first field reading is in error 372 if ~isempty(errormsg) 373 disp_uvmat('ERROR',['time_series / sub_field / ' errormsg],checkrun) 374 return 375 end 376 if ~isfield(Field,'ListVarName') 377 disp_uvmat('ERROR','no variable in the projected field',checkrun) 378 return 379 end 380 DataOut=Field;%output reproduced the first projected field by default 381 nbvar=length(Field.ListVarName); 382 if nbvar==0 383 disp_uvmat('ERROR','no input variable selected',checkrun) 384 return 385 end 386 if checkhisto%case of histograms 387 testsum=zeros(1,nbvar);%initiate flag for action on each variable 388 for ivar=1:numel(Field.ListVarName)% list of variable names before projection (histogram) 389 VarName=Field.ListVarName{ivar}; 390 if isfield(Data{1},VarName) 391 DataOut.ListVarName=[DataOut.ListVarName {[VarName 'Histo']}]; 392 DataOut.VarDimName=[DataOut.VarDimName {{'Time',VarName}}]; 393 % if isfield(DataOut.VarAttribute{ivar},'Role') 394 % DataOut.VarAttribute{ivar}=rmfield(DataOut.VarAttribute{ivar},'Role'); 395 % end 396 StatName=pdf2stat;% get the names of statistical quantities to calcuilate at each time 397 for istat=1:numel(StatName) 398 DataOut.ListVarName=[DataOut.ListVarName {[VarName StatName{istat}]}]; 399 DataOut.VarDimName=[DataOut.VarDimName {'Time'}]; 339 400 end 340 case 3 341 if length(Data)==2 342 Field=transform_fct(Data{1},XmlData{1},Data{2}); 343 else 344 Field=transform_fct(Data{1},XmlData{1}); 345 end 346 case 2 347 Field=transform_fct(Data{1},XmlData{1}); 348 case 1 349 Field=transform_fct(Data{1}); 401 testsum(ivar)=1; 402 DataOut.(VarName)=Field.(VarName); 403 DataOut.([VarName 'Histo'])=zeros([nbfield numel(DataOut.(VarName))]); 404 VarMesh=Field.(VarName)(2)-Field.(VarName)(1); 405 end 350 406 end 351 end 352 353 %field projection on an object 354 if Param.CheckObject 355 % calculate tps coefficients if needed 356 if isfield(Param.ProjObject,'ProjMode')&& strcmp(Param.ProjObject.ProjMode,'interp_tps') 357 Field=tps_coeff_field(Field,check_proj_tps); 358 end 359 [Field,errormsg]=proj_field(Field,Param.ProjObject,VarMesh); 360 if ~isempty(errormsg) 361 msgbox_uvmat('ERROR',['time_series / proj_field / ' errormsg]) 362 return 363 end 364 end 365 % nbfile=nbfile+1; 366 367 % initiate the time series at the first iteration 368 if index==1 369 % stop program if the first field reading is in error 370 if ~isempty(errormsg) 371 disp_uvmat('ERROR',['time_series / sub_field / ' errormsg],checkrun) 372 return 373 end 374 DataOut=Field;%default 375 nbvar=length(Field.ListVarName); 376 if nbvar==0 377 disp_uvmat('ERROR','no input variable selected',checkrun) 378 return 379 end 380 if checkhisto%case of histograms 381 testsum=zeros(1,nbvar);%initiate flag for action on each variable 382 for ivar=1:numel(Field.ListVarName)% list of variable names before projection (histogram) 383 VarName=Field.ListVarName{ivar}; 384 if isfield(Data{1},VarName) 385 testsum(ivar)=1; 386 DataOut.(VarName)=Field.(VarName); 387 DataOut.([VarName 'Histo'])=zeros([nbfield numel(DataOut.(VarName))]); 388 VarMesh=Field.(VarName)(2)-Field.(VarName)(1); 389 end 390 end 391 disp(['mesh for histogram = ' num2str(VarMesh)]) 392 else 393 testsum=2*ones(1,nbvar);%initiate flag for action on each variable 394 if isfield(Field,'VarAttribute') % look for coordinate and flag variables 395 for ivar=1:nbvar 396 if length(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'Role') 397 var_role=Field.VarAttribute{ivar}.Role;%'role' of the variable 398 if isequal(var_role,'errorflag') 399 disp_uvmat('ERROR','do not handle error flags in time series',checkrun) 400 return 401 end 402 if isequal(var_role,'warnflag') 403 testsum(ivar)=0; % not recorded variable 404 eval(['DataOut=rmfield(DataOut,''' Field.ListVarName{ivar} ''');']);%remove variable 405 end 406 if strcmp(var_role,'coord_x')||strcmp(var_role,'coord_y')||strcmp(var_role,'coord_z')||strcmp(var_role,'coord') 407 testsum(ivar)=1; %constant coordinates, record without time evolution 408 end 407 disp(['mesh for histogram = ' num2str(VarMesh)]) 408 else 409 testsum=2*ones(1,nbvar);%initiate flag for action on each variable 410 if isfield(Field,'VarAttribute') % look for coordinate and flag variables 411 for ivar=1:nbvar 412 if length(Field.VarAttribute)>=ivar && isfield(Field.VarAttribute{ivar},'Role') 413 var_role=Field.VarAttribute{ivar}.Role;%'role' of the variable 414 if isequal(var_role,'errorflag') 415 disp_uvmat('ERROR','do not handle error flags in time series',checkrun) 416 return 409 417 end 410 % check whether the variable ivar is a dimension variable 411 DimCell=Field.VarDimName{ivar}; 412 if ischar(DimCell) 413 DimCell={DimCell}; 418 if isequal(var_role,'warnflag') 419 testsum(ivar)=0; % not recorded variable 420 eval(['DataOut=rmfield(DataOut,''' Field.ListVarName{ivar} ''');']);%remove variable 414 421 end 415 if numel(DimCell)==1 && isequal(Field.ListVarName{ivar},DimCell{1})%detect dimension variables416 testsum(ivar)=1; 422 if strcmp(var_role,'coord_x')||strcmp(var_role,'coord_y')||strcmp(var_role,'coord_z')||strcmp(var_role,'coord') 423 testsum(ivar)=1; %constant coordinates, record without time evolution 417 424 end 418 425 end 419 end 420 for ivar=1:nbvar 421 if testsum(ivar)==2 422 VarName=Field.ListVarName{ivar}; 423 siz=size(Field.(VarName)); 424 DataOut.(VarName)=zeros([nbfield siz]); 426 % check whether the variable ivar is a dimension variable 427 DimCell=Field.VarDimName{ivar}; 428 if ischar(DimCell) 429 DimCell={DimCell}; 425 430 end 431 if numel(DimCell)==1 && isequal(Field.ListVarName{ivar},DimCell{1})%detect dimension variables 432 testsum(ivar)=1; 433 end 426 434 end 427 435 end 428 DataOut.ListVarName=[{'Time'} DataOut.ListVarName]; 429 end 430 431 % add data to the current field 432 if checkhisto 433 for ivar=1:length(Field.ListVarName) 434 VarName=Field.ListVarName{ivar}; 435 if isfield(Data{1},VarName) 436 MaxValue=max(DataOut.(VarName));% current max of histogram absissa 437 MinValue=min(DataOut.(VarName));% current min of histogram absissa 438 MaxIndex=round(MaxValue/VarMesh); 439 MinIndex=round(MinValue/VarMesh); 440 MaxIndex_new=round(max(Field.(VarName)/VarMesh));% max of the current field 441 MinIndex_new=round(min(Field.(VarName)/VarMesh)); 442 if MaxIndex_new>MaxIndex% the variable max for the current field exceeds the previous one 443 DataOut.(VarName)=[DataOut.(VarName) VarMesh*(MaxIndex+1:MaxIndex_new)];% append the new variable values 444 DataOut.([VarName 'Histo'])=[DataOut.([VarName 'Histo']) zeros(nbfield,MaxIndex_new-MaxIndex)]; % append the new histo values 445 end 446 if MinIndex_new <= MinIndex-1 447 DataOut.(VarName)=[VarMesh*(MinIndex_new:MinIndex-1) DataOut.(VarName)];% insert the new variable values 448 DataOut.([VarName 'Histo'])=[zeros(nbfield,MinIndex-MinIndex_new) DataOut.([VarName 'Histo'])];% insert the new histo values 449 ind_start=1; 450 else 451 ind_start=MinIndex_new-MinIndex+1; 452 end 453 DataOut.([VarName 'Histo'])(index,ind_start:ind_start+MaxIndex_new-MinIndex_new)=... 454 DataOut.([VarName 'Histo'])(index,ind_start:ind_start+MaxIndex_new-MinIndex_new)+Field.([VarName 'Histo']); 436 for ivar=1:nbvar 437 if testsum(ivar)==2 438 VarName=Field.ListVarName{ivar}; 439 siz=size(Field.(VarName)); 440 DataOut.(VarName)=zeros([nbfield siz]); 455 441 end 456 442 end 443 end 444 DataOut.ListVarName=[{'Time'} DataOut.ListVarName]; 445 end 446 % end initialisation for index==1 447 448 % append data from the current field 449 450 if checkhisto % case of histogram (projection mode=inside or outside) 451 for ivar=1:length(Field.ListVarName) 452 VarName=Field.ListVarName{ivar}; 453 if isfield(Data{1},VarName) 454 MaxValue=max(DataOut.(VarName));% current max of histogram absissa 455 MinValue=min(DataOut.(VarName));% current min of histogram absissa 456 MaxIndex=round(MaxValue/VarMesh); 457 MinIndex=round(MinValue/VarMesh); 458 MaxIndex_new=round(max(Field.(VarName)/VarMesh));% max of the current field 459 MinIndex_new=round(min(Field.(VarName)/VarMesh)); 460 if MaxIndex_new>MaxIndex% the variable max for the current field exceeds the previous one 461 DataOut.(VarName)=[DataOut.(VarName) VarMesh*(MaxIndex+1:MaxIndex_new)];% append the new variable values 462 DataOut.([VarName 'Histo'])=[DataOut.([VarName 'Histo']) zeros(nbfield,MaxIndex_new-MaxIndex)]; % append the new histo values 463 end 464 if MinIndex_new <= MinIndex-1 465 DataOut.(VarName)=[VarMesh*(MinIndex_new:MinIndex-1) DataOut.(VarName)];% insert the new variable values 466 DataOut.([VarName 'Histo'])=[zeros(nbfield,MinIndex-MinIndex_new) DataOut.([VarName 'Histo'])];% insert the new histo values 467 ind_start=1; 468 else 469 ind_start=MinIndex_new-MinIndex+1; 470 end 471 DataOut.([VarName 'Histo'])(index,ind_start:ind_start+MaxIndex_new-MinIndex_new)=... 472 DataOut.([VarName 'Histo'])(index,ind_start:ind_start+MaxIndex_new-MinIndex_new)+Field.([VarName 'Histo']); 473 VarVal=pdf2stat(Field.(VarName),Field.([VarName 'Histo']));% max of the current field 474 for istat=1:numel(VarVal) 475 DataOut.([VarName StatName{istat}])(index)=VarVal(istat); 476 end 477 end 478 end 479 else % not histogram 480 for ivar=1:length(Field.ListVarName) 481 VarName=Field.ListVarName{ivar}; 482 VarVal=Field.(VarName); 483 if testsum(ivar)==2% test for recorded variable 484 if isempty(errormsg) 485 VarVal=shiftdim(VarVal,-1); %shift dimension 486 DataOut.(VarName)(index,:,:)=VarVal;%concanete the current field to the time series 487 end 488 elseif testsum(ivar)==1% variable representing fixed coordinates 489 VarInit=DataOut.(VarName); 490 if isempty(errormsg) && ~isequal(VarVal,VarInit) 491 disp_uvmat('ERROR',['time series requires constant coordinates ' VarName ': use projection mode interp'],checkrun) 492 return 493 end 494 end 495 end 496 end 497 498 % record the time: 499 if isempty(time)% time not set by xml filer(s) 500 if isfield(Data{1},'Time') 501 DataOut.Time(index,1)=Field.Time; 457 502 else 458 for ivar=1:length(Field.ListVarName) 459 VarName=Field.ListVarName{ivar}; 460 VarVal=Field.(VarName); 461 if testsum(ivar)==2% test for recorded variable 462 if isempty(errormsg) 463 VarVal=shiftdim(VarVal,-1); %shift dimension 464 DataOut.(VarName)(index,:,:)=VarVal;%concanete the current field to the time series 465 end 466 elseif testsum(ivar)==1% variable representing fixed coordinates 467 VarInit=DataOut.(VarName); 468 if isempty(errormsg) && ~isequal(VarVal,VarInit) 469 disp_uvmat('ERROR',['time series requires constant coordinates ' VarName ': use projection mode interp'],checkrun) 470 return 471 end 472 end 473 end 474 end 475 476 % record the time: 477 if isempty(time)% time not set by xml filer(s) 478 if isfield(Data{1},'Time') 479 DataOut.Time(index,1)=Field.Time; 480 else 481 DataOut.Time(index,1)=index;%default 482 end 483 else % time from ImaDoc prevails TODO: correct 484 DataOut.Time(index,1)=time(index);% 485 end 486 487 % record the number of missing input fields 488 if ~isempty(errormsg) 489 nbmissing=nbmissing+1; 490 display(['index=' num2str(index) ':' errormsg]) 491 end 492 end 493 end 503 DataOut.Time(index,1)=index;%default 504 end 505 else % time from ImaDoc prevails TODO: correct 506 DataOut.Time(index,1)=time(index);% 507 end 508 509 % record the number of missing input fields 510 if ~isempty(errormsg) 511 nbmissing=nbmissing+1; 512 display(['index=' num2str(index) ':' errormsg]) 513 end 514 end 515 494 516 %%%%%%% END OF LOOP WITHIN A SLICE 495 517 … … 535 557 end 536 558 537 % case of histograms538 if checkhisto539 for ivar=1:numel(Field.ListVarName)540 VarName=Field.ListVarName{ivar};541 if isfield(Data{1},VarName)542 DataOut.ListVarName=[DataOut.ListVarName {[VarName 'Histo']}];543 DataOut.VarDimName=[DataOut.VarDimName {{'Time',VarName}}];544 end545 end546 end559 % %case of histograms 560 % if checkhisto 561 % for ivar=1:numel(Field.ListVarName) 562 % VarName=Field.ListVarName{ivar}; 563 % if isfield(Data{1},VarName) 564 % DataOut.ListVarName=[DataOut.ListVarName {[VarName 'Histo']}]; 565 % DataOut.VarDimName=[DataOut.VarDimName {{'Time',VarName}}]; 566 % end 567 % end 568 % end 547 569 % display nbmissing 548 570 if ~isequal(nbmissing,0) … … 559 581 end 560 582 561 %% plot the time series (the last one in case of multislices) 562 if checkrun 563 figure 564 haxes=axes; 565 plot_field(DataOut,haxes) 566 567 %% display the result file using the GUI get_field 568 hget_field=findobj(allchild(0),'name','get_field'); 569 if ~isempty(hget_field) 570 delete(hget_field) 571 end 572 get_field(OutputFile,DataOut) 573 end 574 575 583 %% plot the time series for (the last one in case of multislices) 584 if checkrun %&& isfield(Param,'ProjObject') && strcmp(Param.ProjObject.Type,'points') 585 %% open the result file with uvmat (in RUN mode) 586 uvmat(OutputFile)% open the last result file with uvmat 587 end 588 % figure 589 % haxes=axes; 590 % plot_field(DataOut,haxes) 591 % 592 % %% display the result file using the GUI get_field 593 % hget_field=findobj(allchild(0),'name','get_field'); 594 % if ~isempty(hget_field) 595 % delete(hget_field) 596 % end 597 % get_field(OutputFile,DataOut) 598 % end 599 600
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