Changes between Version 16 and Version 17 of Installation


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Timestamp:
May 1, 2018, 1:17:27 PM (2 years ago)
Author:
sommeria
Comment:

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  • Installation

    v16 v17  
    1818Note that the package  contains the toolboxes:
    1919
    20  * xmltree (http://www.artefact.tk/software/matlab/xml) , used for reading and editing xml files
     20 * xmltree (http://www.artefact.tk/software/matlab/xml) , used for reading and editing xml files. A set of xml schemas, updated by SVN, is also provided as templates for editing xml files within uvmat.
    2121 * geometric calibration (http://www.vision.caltech.edu/bouguetj/calib_doc)
    2222
    23 An upgrade of these toolboxes from their source web site may be needed depending on the system and Matlab version.
     23An upgrade of these toolboxes from their source web site may be needed depending on the system and Matlab version. 
    2424
    25 A set of xml schemas, updated by SVN, is also provided as templates for editing xml files within uvmat.
     25The package is able to read movies using Matlab tools, and proprietary image formats which may require updates of reading functions.
    2626
    27 === Installation on a cluster ===
    28 The package contains a GUI called 'series' to launch computations in parallel on a computer cluster. This requires to define parameters in a file series.xml associated with a Matlab function (whose name is given series.xml) which produces the system command needed to launch computations. The file series.xml.default and the associated function cluster_command.m, used at LEGI, are given as templates. Other examples are provided, for instance cluster_command_psmn used at ENSLyon. If you wish to install UVMAT in your home of the LEGI cluster, please see [https://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/search?q=wiki%3AInstallation%2FLegiCluster Installation/LegiCluster].
     27 * fast cameras Phantom (.cine images): functions read_cine_phantom.m and readCineHeader.m.
     28 * system DaVis of the company Lavision (.imx images): mex files readimix.meca64 and readimix.mexw64 (limited to Matlab version of 2013 or older).
     29 * company Rdvision: function read_rdvision.m
    2930
    30 === CivX  installation (obsolete) ===
     31It is possible to add your own specific reading functions by first adding a specific format in the function get_file_info.m (recognised by means of file name extension for instance), and then modified the functions read_field.m and read_image.m.
     32
     33== Installation on a cluster ==
     34The package contains a GUI called 'series' to launch computations in parallel on a computer cluster. This requires to define parameters in a file series.xml associated with a Matlab function (whose name is given series.xml) which produces the system command needed to launch computations. The file series.xml.default and the associated function cluster_command.m, used at LEGI, are given as templates. Other examples are provided, for instance cluster_command_psmn.m used at ENSLyon.
     35
     36For using  UVMAT on the cluster at LEGI, please see [https://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/search?q=wiki%3AInstallation%2FLegiCluster Installation/LegiCluster].
     37
     38== Launching compiled functions ==
     39On a cluster each job requires a Matlab license, which may be a restriction to the number of jobs run in parallel. If the compiler toolbox of Matlab is installed, you can compile the functions and launch them on cluster nodes as .sh executable files without additional Matlab license.
     40
     41== CivX  installation (obsolete) ==
    3142Binary files compiled from the Fortran programs ''CivX'' are available in the archive bin_civx.zip at [http://servforge.legi.grenoble-inp.fr/pub/soft-uvmat]. This is however not advised as it is replaced by Matlab functions within uvmat, with improved capabilities. These binaries depend on the operating system, unlike the Matlab toolboxes, so that archives are provided for different systems:
    3243