| 16 | | * '''geometry_calib.fig''': determines geometric calibration parameters for relating image to physical coordinates. The toolbox [->http://www.vision.caltech.edu/bouguetj/calib_doc/] is used, copied in the subdirectory /toolbox_calib. |
| 17 | | * '''get_field.fig:''' selects coordinates and field in a general NetCDF file. The subdirectory /get_field contains functions called by the GUI get_field. |
| 18 | | * '''series.fig:''' apply various processing functions to series of fields. These functions are stored in the subdirectory /series. |
| 19 | | * '''set_object.fig:''' creates and edits geometric objects used to project data: points, lines, planes... |
| | 16 | * '''geometry_calib.fig''': determines geometric calibration parameters for relating image to physical coordinates. The toolbox [->http://www.vision.caltech.edu/bouguetj/calib_doc/] is used, copied in the subdirectory /toolbox_calib. |
| | 17 | * '''get_field.fig:''' selects coordinates and field in a general NetCDF file. The subdirectory /get_field contains functions called by the GUI get_field. |
| | 18 | * '''series.fig:''' apply various processing functions to series of fields. These functions are stored in the subdirectory /series. |
| | 19 | * '''set_object.fig:''' creates and edits geometric objects used to project data: points, lines, planes... |
| 708 | | -'civ';... %function associated with the interface 'civ.fig' for PIV and spline interpolation -'create_grid';...% called by the GUI geometry_calib to create a physical grid - 'dataview';...% function for scanning directories in a campaign -'editxml';...%display and edit xml files using a xls schema -'geometry_calib';...%performs geometric calibration from a set of reference points -'get_field';...% choose and plot a field from a Netcdf file -'msgbox_uvmat';... associated with GUI msgbox_uvmat.fig to display message boxes, for error, warning or input calls -'rotate_points';...%'rotate_points': associated with GUI rotate_points.fig to introduce (2D) rotation parameters -'series';...% master function for analysis field series, with interface 'series.fig' -'set_grid';...% creates a grid for PIV -'set_object';...% edit a projection object -'translate_points';...% associated with GUI translate_points.fig to display translation parameters -'view_field';...% function for visualisation of projected fields' |
| | 707 | * 'civ';... %function associated with the interface 'civ.fig' for PIV and spline interpolation |
| | 708 | * 'create_grid';...% called by the GUI geometry_calib to create a physical grid |
| | 709 | * 'dataview';...% function for scanning directories in a campaign |
| | 710 | * 'editxml';...%display and edit xml files using a xls schema |
| | 711 | * 'geometry_calib';...%performs geometric calibration from a set of reference points |
| | 712 | * 'get_field';...% choose and plot a field from a Netcdf file |
| | 713 | * 'msgbox_uvmat';... associated with GUI msgbox_uvmat.fig to display message boxes, for error, warning or input calls |
| | 714 | * 'rotate_points';...%'rotate_points': associated with GUI rotate_points.fig to introduce (2D) rotation parameters |
| | 715 | * 'series';...% master function for analysis field series, with interface 'series.fig' |
| | 716 | * 'set_grid';...% creates a grid for PIV * 'set_object';...% edit a projection object |
| | 717 | * 'translate_points';...% associated with GUI translate_points.fig to display translation parameters |
| | 718 | * 'view_field';...% function for visualisation of projected fields' |
| 714 | | -'civ_matlab';...% civ programs, Matlab version (called by civ.m, option Civprogram/Matlab in the upper menu bar) -'plot_field';...%displays a vector field and/or scalar or images -'plot_object';...%draws a projection object (points, line, plane...) -'proj_field';...%project a field on a projection object (plane, line,...) -'RUN_STLIN';...% combine 2 displacement fields for stereo PIV -'sub_field';...% combine the two input fields, |
| | 727 | * 'civ_matlab';...% civ programs, Matlab version (called by civ.m, option Civprogram/Matlab in the upper menu bar) |
| | 728 | * 'plot_field';...%displays a vector field and/or scalar or images |
| | 729 | * 'plot_object';...%draws a projection object (points, line, plane...) |
| | 730 | * 'proj_field';...%project a field on a projection object (plane, line,...) |
| | 731 | * 'RUN_STLIN';...% combine 2 displacement fields for stereo PIV * 'sub_field';...% combine the two input fields, |
| 717 | | -'cell2tab';... % transform a Matlab cell in a character array suitable for display in a table -'fill_GUI';... % fill a GUI with handles 'handles' from input data Param -'imadoc2struct';...% convert the image documentation file ImaDoc into a Matlab structure -'nc2struct';...% transform a netcdf file in a corresponding matlab structure -'num2stra';...% transform number to the corresponding character string depending on the nomenclature. -'read_field':...% read the fields from files in different formats (netcdf files, images, video) -'read_GUI'::...% read a GUI and provide the data as a Matlab structure 'read_image';... read images or video objects -'read_multimadoc';... %read a set of Imadoc files and compare their timing of different file series 'read_xls';...%read excel files containing the list of the experiments -'stra2num';...% transform letters (a, b, A, B,) or numerical strings ('1','2'..) to the corresponding numbers -'struct2nc';...% write fields in netcdf files -'struct2xml';... transform a matlab structure to a xml tree. -'xml2struct'...% read an xml file as a Matlab structure, converts numeric character strings into numbers |
| | 734 | * 'cell2tab';... % transform a Matlab cell in a character array suitable for display in a table |
| | 735 | * 'fill_GUI';... % fill a GUI with handles 'handles' from input data Param |
| | 736 | * 'imadoc2struct';...% convert the image documentation file ImaDoc into a Matlab structure |
| | 737 | * 'nc2struct';...% transform a netcdf file in a corresponding matlab structure |
| | 738 | * 'num2stra';...% transform number to the corresponding character string depending on the nomenclature. |
| | 739 | * 'read_field':...% read the fields from files in different formats (netcdf files, images, video) |
| | 740 | * 'read_GUI'::...% read a GUI and provide the data as a Matlab structure 'read_image';... read images or video objects |
| | 741 | * 'read_multimadoc';... %read a set of Imadoc files and compare their timing of different file series 'read_xls';...%read excel files containing the list of the experiments |
| | 742 | * 'stra2num';...% transform letters (a, b, A, B,) or numerical strings ('1','2'..) to the corresponding numbers |
| | 743 | * 'struct2nc';...% write fields in netcdf files |
| | 744 | * 'struct2xml';... transform a matlab structure to a xml tree. |
| | 745 | * 'xml2struct'...% read an xml file as a Matlab structure, converts numeric character strings into numbers |
| 720 | | -'calc_field';...% defines fields (velocity, vort, div...) from civx data (old conventions) and calculate them. -'calc_field_interp': defines fields (velocity, vort, div...) from civ data and calculate them for projection with linear interpolation -'calc_field_tps': defines fields (velocity, vort, div...) from civ data and calculate them with tps interpolation -calc_tps': calculate the thin plate spline (tps) coefficients for interpolation -'check_files';...% check the path, modification date and svn version for all the function in the toolbox UVMAT. -'close_fig';...% function activated when a figure is closed -'copyfields';...% copy fields between two matlab structures -'delete_object';...%delete a projection object, defined by its index in the Uvmat list or by its graphic handle 'fileparts_uvmat': splits a file name in root and indices and recognize file naming convention -'filter_tps';...% find the thin plate spline coefficients for interpolation-smoothing -'find_field_cells';...% group the variables of a nc-formated Matlab structure into 'fields' with common dimensions -find_field_cells': test field structure for input in proj_field and plot_field, group the variables into 'fields' with common dimensions -'find_file_series';...%check the content of an input file and find the corresponding file series -'fullfile_uvmat';...%creates a file name from a root name and indices. -'get_file_type': determine info about a file (image, multimage, civdata,...) -'griddata_uvmat';...%make 2D linear interpolation using griddata, with input appropriate for both Matlab 6.5 and 7 |
| 721 | | |
| 722 | | -'hist_update';...% update of a current global histogram by inclusion of a new field |
| 723 | | |
| 724 | | -'ListDir';... scan the structure of the directory tree (for dataview.m) -'open_uvmat';...% open with uvmat the field selected in the list of 'civ/status' or 'series/check_data_files' -'peaklock';...% -'phys_XYZ';...% transform coordiantes from pixels to phys -'px_XYZ';...% transform coordiantes from phys to pixels -'read_civxdata';...reads civx data from netcdf files -'read_civdata';... reads new civ data from netcdf files -'read_get_field';... read the list of selected variables from the GUI get_field (TODO: use read_GUI) -'read_imatext';...%read .civ files (obsolete, but can be adapted to other text documentation files) -'read_xls';...%read excel files containing the list of the experiments -'reinit';...% suppress the personal parameter file 'uvmat_perso.mat' -'set_col_vec';...% sets the color code for vectors depending on a scalar and input parameters (used for plot_field) -'tps_coeff';...% calculate the thin plate spline (tps) coefficients -'tps_eval';... %calculate the thin plate spline (tps) interpolation at a set of points -'tps_eval_dxy';...% calculate the derivatives of thin plate spline (tps) interpolation at a set of points (limited to the 2D case) -'update_imadoc';... %update the ImaDoc xml file -'update_obj';... update the object representation graph and its projection field, record it in the uvmat interface -'update_waitbar';... update the waitbar display, used for ACTION functions in the GUI 'series' -'write_plot_param'...%update plotting parameters after plot, TODO: change into a general function: fill_GUI |
| | 748 | * 'calc_field';...% defines fields (velocity, vort, div...) from civx data (old conventions) and calculate them. |
| | 749 | * 'calc_field_interp': defines fields (velocity, vort, div...) from civ data and calculate them for projection with linear interpolation |
| | 750 | * 'calc_field_tps': defines fields (velocity, vort, div...) from civ data and calculate them with tps interpolation |
| | 751 | * calc_tps': calculate the thin plate spline (tps) coefficients for interpolation |
| | 752 | * 'check_files';...% check the path, modification date and svn version for all the function in the toolbox UVMAT. |
| | 753 | * 'close_fig';...% function activated when a figure is closed |
| | 754 | * 'copyfields';...% copy fields between two matlab structures |
| | 755 | * 'delete_object';...%delete a projection object, defined by its index in the Uvmat list or by its graphic handle 'fileparts_uvmat': splits a file name in root and indices and recognize file naming convention |
| | 756 | * 'filter_tps';...% find the thin plate spline coefficients for interpolation-smoothing |
| | 757 | * 'find_field_cells';...% group the variables of a nc-formated Matlab structure into 'fields' with common dimensions |
| | 758 | * find_field_cells': test field structure for input in proj_field and plot_field, group the variables into 'fields' with common dimensions |
| | 759 | * 'find_file_series';...%check the content of an input file and find the corresponding file series |
| | 760 | * 'fullfile_uvmat';...%creates a file name from a root name and indices. |
| | 761 | * 'get_file_type': determine info about a file (image, multimage, civdata,...) |
| | 762 | * 'griddata_uvmat';...%make 2D linear interpolation using griddata, with input appropriate for both Matlab 6.5 and 7 |
| | 763 | * 'hist_update';...% update of a current global histogram by inclusion of a new field |
| | 764 | * '!ListDir';... scan the structure of the directory tree (for dataview.m) |
| | 765 | * 'open_uvmat';...% open with uvmat the field selected in the list of 'civ/status' or 'series/check_data_files' |
| | 766 | * 'peaklock';...% -'phys_XYZ';...% transform coordiantes from pixels to phys |
| | 767 | * 'px_XYZ';...% transform coordiantes from phys to pixels |
| | 768 | * 'read_civxdata';...reads civx data from netcdf files |
| | 769 | * 'read_civdata';... reads new civ data from netcdf files |
| | 770 | * 'read_get_field';... read the list of selected variables from the GUI get_field (TODO: use read_GUI) |
| | 771 | * 'read_imatext';...%read .civ files (obsolete, but can be adapted to other text documentation files) |
| | 772 | * 'read_xls';...%read excel files containing the list of the experiments |
| | 773 | * 'reinit';...% suppress the personal parameter file 'uvmat_perso.mat' |
| | 774 | * 'set_col_vec';...% sets the color code for vectors depending on a scalar and input parameters (used for plot_field) |
| | 775 | * 'tps_coeff';...% calculate the thin plate spline (tps) coefficients |
| | 776 | * 'tps_eval';... %calculate the thin plate spline (tps) interpolation at a set of points |
| | 777 | * 'tps_eval_dxy';...% calculate the derivatives of thin plate spline (tps) interpolation at a set of points (limited to the 2D case) |
| | 778 | * 'update_imadoc';... %update the ImaDoc xml file |
| | 779 | * 'update_obj';... update the object representation graph and its projection field, record it in the uvmat interface |
| | 780 | * 'update_waitbar';... update the waitbar display, used for ACTION functions in the GUI 'series' |
| | 781 | * 'write_plot_param'...%update plotting parameters after plot, TODO: change into a general function: fill_GUI |
